Multiple sequence alignment - TraesCS2A01G555500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G555500 chr2A 100.000 3620 0 0 1 3620 759831072 759834691 0.000000e+00 6685
1 TraesCS2A01G555500 chr2A 84.255 705 107 2 1816 2520 760344055 760344755 0.000000e+00 684
2 TraesCS2A01G555500 chr2A 85.393 534 78 0 1723 2256 760494039 760494572 4.080000e-154 555
3 TraesCS2A01G555500 chr2A 89.444 180 15 4 374 552 362446090 362445914 1.310000e-54 224
4 TraesCS2A01G555500 chr2D 96.933 2837 57 7 784 3618 631935720 631932912 0.000000e+00 4730
5 TraesCS2A01G555500 chr2D 85.610 410 55 4 1935 2344 630835411 630835006 9.290000e-116 427
6 TraesCS2A01G555500 chr2D 89.474 285 30 0 2215 2499 630677160 630676876 9.560000e-96 361
7 TraesCS2A01G555500 chr2D 88.559 236 26 1 1722 1957 630679421 630679187 5.920000e-73 285
8 TraesCS2A01G555500 chr2D 89.083 229 22 2 1723 1949 630835660 630835433 7.650000e-72 281
9 TraesCS2A01G555500 chr2D 90.286 175 14 2 378 552 562752766 562752595 3.640000e-55 226
10 TraesCS2A01G555500 chr2B 96.138 2719 64 13 877 3589 775166778 775164095 0.000000e+00 4401
11 TraesCS2A01G555500 chr2B 84.699 915 112 10 1725 2638 774614928 774615815 0.000000e+00 889
12 TraesCS2A01G555500 chr2B 84.481 915 114 12 1725 2638 774639754 774640641 0.000000e+00 878
13 TraesCS2A01G555500 chr2B 84.532 918 108 12 1723 2638 774656095 774656980 0.000000e+00 878
14 TraesCS2A01G555500 chr2B 81.996 922 137 8 1725 2644 773747546 773746652 0.000000e+00 756
15 TraesCS2A01G555500 chr2B 89.444 180 13 4 374 552 66219827 66220001 4.700000e-54 222
16 TraesCS2A01G555500 chr2B 100.000 65 0 0 784 848 775166842 775166778 1.770000e-23 121
17 TraesCS2A01G555500 chr2B 93.671 79 3 1 1 77 775168318 775168240 2.280000e-22 117
18 TraesCS2A01G555500 chr5A 84.360 812 68 31 2836 3618 657545749 657544968 0.000000e+00 741
19 TraesCS2A01G555500 chr5D 84.139 807 73 25 2836 3617 529538995 529538219 0.000000e+00 730
20 TraesCS2A01G555500 chr5D 89.503 181 14 4 375 554 438340242 438340418 1.310000e-54 224
21 TraesCS2A01G555500 chr5D 88.827 179 18 2 374 552 115928104 115927928 6.090000e-53 219
22 TraesCS2A01G555500 chr5B 83.540 808 69 28 2836 3618 668471958 668471190 0.000000e+00 697
23 TraesCS2A01G555500 chrUn 88.010 392 44 3 2211 2601 479547403 479547792 9.160000e-126 460
24 TraesCS2A01G555500 chr3D 89.385 179 16 2 374 552 535998173 535998348 4.700000e-54 222
25 TraesCS2A01G555500 chr3D 87.429 175 21 1 98 271 495320575 495320401 2.200000e-47 200
26 TraesCS2A01G555500 chr3D 87.582 153 17 2 100 250 33382609 33382457 3.710000e-40 176
27 TraesCS2A01G555500 chr7D 89.444 180 12 7 374 552 49755779 49755606 1.690000e-53 220
28 TraesCS2A01G555500 chr4A 88.462 182 17 4 372 552 686598263 686598085 2.190000e-52 217
29 TraesCS2A01G555500 chr1D 88.462 182 17 4 372 552 68380135 68379957 2.190000e-52 217
30 TraesCS2A01G555500 chr3B 88.000 175 20 1 98 271 654346230 654346056 4.740000e-49 206
31 TraesCS2A01G555500 chr3B 87.429 175 21 1 98 271 654355624 654355450 2.200000e-47 200
32 TraesCS2A01G555500 chr1B 87.861 173 17 4 99 269 340804638 340804468 2.200000e-47 200
33 TraesCS2A01G555500 chr3A 87.662 154 17 2 99 250 46168376 46168223 1.030000e-40 178
34 TraesCS2A01G555500 chr3A 81.395 172 30 2 99 268 703915821 703915992 4.870000e-29 139
35 TraesCS2A01G555500 chr6D 82.386 176 25 4 99 273 56906022 56905852 8.100000e-32 148
36 TraesCS2A01G555500 chr6D 82.424 165 25 3 107 268 137542420 137542257 1.360000e-29 141
37 TraesCS2A01G555500 chr7B 78.924 223 38 8 551 765 742124613 742124392 3.770000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G555500 chr2A 759831072 759834691 3619 False 6685.000000 6685 100.0000 1 3620 1 chr2A.!!$F1 3619
1 TraesCS2A01G555500 chr2A 760344055 760344755 700 False 684.000000 684 84.2550 1816 2520 1 chr2A.!!$F2 704
2 TraesCS2A01G555500 chr2A 760494039 760494572 533 False 555.000000 555 85.3930 1723 2256 1 chr2A.!!$F3 533
3 TraesCS2A01G555500 chr2D 631932912 631935720 2808 True 4730.000000 4730 96.9330 784 3618 1 chr2D.!!$R2 2834
4 TraesCS2A01G555500 chr2D 630835006 630835660 654 True 354.000000 427 87.3465 1723 2344 2 chr2D.!!$R4 621
5 TraesCS2A01G555500 chr2D 630676876 630679421 2545 True 323.000000 361 89.0165 1722 2499 2 chr2D.!!$R3 777
6 TraesCS2A01G555500 chr2B 775164095 775168318 4223 True 1546.333333 4401 96.6030 1 3589 3 chr2B.!!$R2 3588
7 TraesCS2A01G555500 chr2B 774614928 774615815 887 False 889.000000 889 84.6990 1725 2638 1 chr2B.!!$F2 913
8 TraesCS2A01G555500 chr2B 774639754 774640641 887 False 878.000000 878 84.4810 1725 2638 1 chr2B.!!$F3 913
9 TraesCS2A01G555500 chr2B 774656095 774656980 885 False 878.000000 878 84.5320 1723 2638 1 chr2B.!!$F4 915
10 TraesCS2A01G555500 chr2B 773746652 773747546 894 True 756.000000 756 81.9960 1725 2644 1 chr2B.!!$R1 919
11 TraesCS2A01G555500 chr5A 657544968 657545749 781 True 741.000000 741 84.3600 2836 3618 1 chr5A.!!$R1 782
12 TraesCS2A01G555500 chr5D 529538219 529538995 776 True 730.000000 730 84.1390 2836 3617 1 chr5D.!!$R2 781
13 TraesCS2A01G555500 chr5B 668471190 668471958 768 True 697.000000 697 83.5400 2836 3618 1 chr5B.!!$R1 782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
532 1545 0.310854 GGTCAAAGTTGAAGCACGGG 59.689 55.0 0.00 0.0 39.21 5.28 F
601 1614 0.323087 GTACCCTGGGCCGTCAATTT 60.323 55.0 14.08 0.0 0.00 1.82 F
603 1616 0.406361 ACCCTGGGCCGTCAATTTAA 59.594 50.0 14.08 0.0 0.00 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2418 5314 1.145738 ACCAACCAGAAAGCCAGATGT 59.854 47.619 0.0 0.00 0.00 3.06 R
2572 5469 2.232750 CAGAGCACAGCTGTGTCAC 58.767 57.895 39.3 29.58 43.55 3.67 R
2674 5571 7.342026 TCAGTTGCTATCTCCTAGTGATACAAA 59.658 37.037 13.1 5.19 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.001641 CCCCTTGTTCAGGCTCCAG 60.002 63.158 0.00 0.00 42.29 3.86
33 34 1.492133 CCCCTTGTTCAGGCTCCAGA 61.492 60.000 0.00 0.00 42.29 3.86
94 123 7.405292 AGGAACATCAGATTTTTAGACATGGA 58.595 34.615 0.00 0.00 0.00 3.41
95 124 7.337942 AGGAACATCAGATTTTTAGACATGGAC 59.662 37.037 0.00 0.00 0.00 4.02
101 163 6.825213 TCAGATTTTTAGACATGGACATGAGG 59.175 38.462 18.38 0.00 41.20 3.86
105 167 5.955961 TTTAGACATGGACATGAGGATGA 57.044 39.130 18.38 0.00 41.20 2.92
135 197 0.599728 TTGCAAGCACGGCAATTTCC 60.600 50.000 0.00 0.00 45.57 3.13
139 202 0.598065 AAGCACGGCAATTTCCTGTC 59.402 50.000 0.00 0.00 0.00 3.51
165 228 7.587037 AAAAATGAACTGAGACAGATTTCCA 57.413 32.000 5.76 0.00 35.18 3.53
170 238 4.298103 ACTGAGACAGATTTCCATGCTT 57.702 40.909 5.76 0.00 35.18 3.91
192 260 2.562738 GCCAACTAAACTTGCCATCCTT 59.437 45.455 0.00 0.00 0.00 3.36
193 261 3.614870 GCCAACTAAACTTGCCATCCTTG 60.615 47.826 0.00 0.00 0.00 3.61
194 262 3.056607 CCAACTAAACTTGCCATCCTTGG 60.057 47.826 0.00 0.00 46.66 3.61
247 1260 7.122055 TCGTTTTACCATGCCTAAAAATCTGAT 59.878 33.333 7.68 0.00 0.00 2.90
251 1264 6.610075 ACCATGCCTAAAAATCTGATGTTT 57.390 33.333 10.47 10.47 0.00 2.83
255 1268 5.472148 TGCCTAAAAATCTGATGTTTGCTG 58.528 37.500 14.64 5.47 0.00 4.41
263 1276 8.712285 AAAATCTGATGTTTGCTGGATATTTG 57.288 30.769 0.00 0.00 0.00 2.32
264 1277 5.840243 TCTGATGTTTGCTGGATATTTGG 57.160 39.130 0.00 0.00 0.00 3.28
265 1278 4.646040 TCTGATGTTTGCTGGATATTTGGG 59.354 41.667 0.00 0.00 0.00 4.12
266 1279 4.352009 TGATGTTTGCTGGATATTTGGGT 58.648 39.130 0.00 0.00 0.00 4.51
267 1280 4.402155 TGATGTTTGCTGGATATTTGGGTC 59.598 41.667 0.00 0.00 0.00 4.46
268 1281 3.096092 TGTTTGCTGGATATTTGGGTCC 58.904 45.455 0.00 0.00 35.02 4.46
269 1282 3.245586 TGTTTGCTGGATATTTGGGTCCT 60.246 43.478 0.00 0.00 35.49 3.85
270 1283 3.756082 TTGCTGGATATTTGGGTCCTT 57.244 42.857 0.00 0.00 35.49 3.36
271 1284 3.017048 TGCTGGATATTTGGGTCCTTG 57.983 47.619 0.00 0.00 35.49 3.61
272 1285 2.580322 TGCTGGATATTTGGGTCCTTGA 59.420 45.455 0.00 0.00 35.49 3.02
273 1286 3.217626 GCTGGATATTTGGGTCCTTGAG 58.782 50.000 0.00 0.00 35.49 3.02
274 1287 3.117888 GCTGGATATTTGGGTCCTTGAGA 60.118 47.826 0.00 0.00 35.49 3.27
275 1288 4.446889 GCTGGATATTTGGGTCCTTGAGAT 60.447 45.833 0.00 0.00 35.49 2.75
276 1289 5.221925 GCTGGATATTTGGGTCCTTGAGATA 60.222 44.000 0.00 0.00 35.49 1.98
277 1290 6.523150 GCTGGATATTTGGGTCCTTGAGATAT 60.523 42.308 0.00 0.00 35.49 1.63
278 1291 7.311297 GCTGGATATTTGGGTCCTTGAGATATA 60.311 40.741 0.00 0.00 35.49 0.86
279 1292 8.700145 TGGATATTTGGGTCCTTGAGATATAT 57.300 34.615 0.00 0.00 35.49 0.86
280 1293 9.797732 TGGATATTTGGGTCCTTGAGATATATA 57.202 33.333 0.00 0.00 35.49 0.86
287 1300 8.553085 TGGGTCCTTGAGATATATATATGTGG 57.447 38.462 10.03 4.53 0.00 4.17
310 1323 8.718734 GTGGTTATTTTGAGATAAAGACGACTT 58.281 33.333 0.00 0.00 38.05 3.01
314 1327 7.962964 ATTTTGAGATAAAGACGACTTGACA 57.037 32.000 0.00 0.00 36.39 3.58
319 1332 8.018677 TGAGATAAAGACGACTTGACATTTTC 57.981 34.615 0.00 0.00 36.39 2.29
320 1333 7.655732 TGAGATAAAGACGACTTGACATTTTCA 59.344 33.333 0.00 2.44 36.39 2.69
362 1375 8.918202 TTTTCTTCTTAAATCTACTCTTGCCA 57.082 30.769 0.00 0.00 0.00 4.92
363 1376 8.553459 TTTCTTCTTAAATCTACTCTTGCCAG 57.447 34.615 0.00 0.00 0.00 4.85
364 1377 6.644347 TCTTCTTAAATCTACTCTTGCCAGG 58.356 40.000 0.00 0.00 0.00 4.45
365 1378 6.440647 TCTTCTTAAATCTACTCTTGCCAGGA 59.559 38.462 0.00 0.00 0.00 3.86
366 1379 6.227298 TCTTAAATCTACTCTTGCCAGGAG 57.773 41.667 1.76 1.76 36.92 3.69
367 1380 5.958380 TCTTAAATCTACTCTTGCCAGGAGA 59.042 40.000 11.18 0.00 35.10 3.71
368 1381 6.440647 TCTTAAATCTACTCTTGCCAGGAGAA 59.559 38.462 11.18 0.00 35.10 2.87
370 1383 5.707066 AATCTACTCTTGCCAGGAGAATT 57.293 39.130 11.18 4.76 35.10 2.17
371 1384 5.707066 ATCTACTCTTGCCAGGAGAATTT 57.293 39.130 11.18 0.00 35.10 1.82
372 1385 5.505181 TCTACTCTTGCCAGGAGAATTTT 57.495 39.130 11.18 0.00 35.10 1.82
375 1388 4.473444 ACTCTTGCCAGGAGAATTTTCAA 58.527 39.130 11.18 0.00 35.10 2.69
376 1389 5.082425 ACTCTTGCCAGGAGAATTTTCAAT 58.918 37.500 11.18 0.00 35.10 2.57
377 1390 5.541484 ACTCTTGCCAGGAGAATTTTCAATT 59.459 36.000 11.18 0.00 35.10 2.32
378 1391 6.042437 ACTCTTGCCAGGAGAATTTTCAATTT 59.958 34.615 11.18 0.00 35.10 1.82
379 1392 6.829849 TCTTGCCAGGAGAATTTTCAATTTT 58.170 32.000 0.00 0.00 0.00 1.82
380 1393 6.707161 TCTTGCCAGGAGAATTTTCAATTTTG 59.293 34.615 0.00 0.00 0.00 2.44
383 1396 5.409520 GCCAGGAGAATTTTCAATTTTGACC 59.590 40.000 0.00 0.00 36.83 4.02
384 1397 6.523840 CCAGGAGAATTTTCAATTTTGACCA 58.476 36.000 0.00 0.00 36.83 4.02
386 1399 8.313292 CCAGGAGAATTTTCAATTTTGACCATA 58.687 33.333 0.00 0.00 36.83 2.74
399 1412 9.804547 CAATTTTGACCATAAATTTAACCAACG 57.195 29.630 1.21 0.00 34.01 4.10
400 1413 9.765795 AATTTTGACCATAAATTTAACCAACGA 57.234 25.926 1.21 0.00 32.75 3.85
401 1414 8.804688 TTTTGACCATAAATTTAACCAACGAG 57.195 30.769 1.21 0.00 0.00 4.18
402 1415 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
403 1416 7.136289 TGACCATAAATTTAACCAACGAGAC 57.864 36.000 1.21 0.00 0.00 3.36
404 1417 6.149807 TGACCATAAATTTAACCAACGAGACC 59.850 38.462 1.21 0.00 0.00 3.85
405 1418 5.122711 ACCATAAATTTAACCAACGAGACCG 59.877 40.000 1.21 0.00 42.50 4.79
406 1419 5.352016 CCATAAATTTAACCAACGAGACCGA 59.648 40.000 1.21 0.00 39.50 4.69
407 1420 6.037830 CCATAAATTTAACCAACGAGACCGAT 59.962 38.462 1.21 0.00 39.50 4.18
408 1421 5.541098 AAATTTAACCAACGAGACCGATC 57.459 39.130 0.00 0.00 39.50 3.69
409 1422 3.663995 TTTAACCAACGAGACCGATCA 57.336 42.857 0.00 0.00 39.50 2.92
410 1423 3.880047 TTAACCAACGAGACCGATCAT 57.120 42.857 0.00 0.00 39.50 2.45
411 1424 4.987408 TTAACCAACGAGACCGATCATA 57.013 40.909 0.00 0.00 39.50 2.15
412 1425 3.438297 AACCAACGAGACCGATCATAG 57.562 47.619 0.00 0.00 39.50 2.23
413 1426 1.067212 ACCAACGAGACCGATCATAGC 59.933 52.381 0.00 0.00 39.50 2.97
414 1427 1.399572 CAACGAGACCGATCATAGCG 58.600 55.000 0.00 0.00 39.50 4.26
422 1435 2.751166 CCGATCATAGCGGGAGAATT 57.249 50.000 0.00 0.00 44.87 2.17
423 1436 3.045601 CCGATCATAGCGGGAGAATTT 57.954 47.619 0.00 0.00 44.87 1.82
424 1437 3.403038 CCGATCATAGCGGGAGAATTTT 58.597 45.455 0.00 0.00 44.87 1.82
425 1438 3.815401 CCGATCATAGCGGGAGAATTTTT 59.185 43.478 0.00 0.00 44.87 1.94
479 1492 8.773404 ACGAATTCACTAGTATAACTTTTGCT 57.227 30.769 6.22 0.00 0.00 3.91
480 1493 8.870879 ACGAATTCACTAGTATAACTTTTGCTC 58.129 33.333 6.22 0.00 0.00 4.26
481 1494 8.328864 CGAATTCACTAGTATAACTTTTGCTCC 58.671 37.037 6.22 0.00 0.00 4.70
482 1495 8.507524 AATTCACTAGTATAACTTTTGCTCCC 57.492 34.615 0.00 0.00 0.00 4.30
483 1496 5.657474 TCACTAGTATAACTTTTGCTCCCG 58.343 41.667 0.00 0.00 0.00 5.14
484 1497 4.270325 CACTAGTATAACTTTTGCTCCCGC 59.730 45.833 0.00 0.00 0.00 6.13
485 1498 2.640184 AGTATAACTTTTGCTCCCGCC 58.360 47.619 0.00 0.00 34.43 6.13
486 1499 1.329599 GTATAACTTTTGCTCCCGCCG 59.670 52.381 0.00 0.00 34.43 6.46
487 1500 1.654023 ATAACTTTTGCTCCCGCCGC 61.654 55.000 0.00 0.00 34.43 6.53
488 1501 4.887932 TATAACTTTTGCTCCCGCCGCA 62.888 50.000 0.00 0.00 35.22 5.69
489 1502 3.669344 CTTTTGCTCCCGCCGCAA 61.669 61.111 0.00 0.00 44.83 4.85
506 1519 4.455917 CGCAAACGGTCTTGTTAGTTAA 57.544 40.909 0.00 0.00 34.97 2.01
507 1520 4.835344 CGCAAACGGTCTTGTTAGTTAAA 58.165 39.130 0.00 0.00 34.97 1.52
508 1521 5.445845 CGCAAACGGTCTTGTTAGTTAAAT 58.554 37.500 0.00 0.00 34.97 1.40
509 1522 5.910723 CGCAAACGGTCTTGTTAGTTAAATT 59.089 36.000 0.00 0.00 34.97 1.82
510 1523 6.415573 CGCAAACGGTCTTGTTAGTTAAATTT 59.584 34.615 0.00 0.00 34.97 1.82
511 1524 7.587028 CGCAAACGGTCTTGTTAGTTAAATTTA 59.413 33.333 0.00 0.00 34.97 1.40
512 1525 9.401873 GCAAACGGTCTTGTTAGTTAAATTTAT 57.598 29.630 0.00 0.00 0.00 1.40
514 1527 9.902196 AAACGGTCTTGTTAGTTAAATTTATGG 57.098 29.630 0.00 0.00 0.00 2.74
515 1528 8.625786 ACGGTCTTGTTAGTTAAATTTATGGT 57.374 30.769 0.00 0.00 0.00 3.55
516 1529 8.724229 ACGGTCTTGTTAGTTAAATTTATGGTC 58.276 33.333 0.00 0.00 0.00 4.02
517 1530 8.723311 CGGTCTTGTTAGTTAAATTTATGGTCA 58.277 33.333 0.00 0.00 0.00 4.02
527 1540 9.476202 AGTTAAATTTATGGTCAAAGTTGAAGC 57.524 29.630 0.00 0.00 39.21 3.86
528 1541 9.255304 GTTAAATTTATGGTCAAAGTTGAAGCA 57.745 29.630 0.00 0.00 39.21 3.91
529 1542 7.713764 AAATTTATGGTCAAAGTTGAAGCAC 57.286 32.000 0.00 0.00 39.21 4.40
530 1543 4.481930 TTATGGTCAAAGTTGAAGCACG 57.518 40.909 0.00 0.00 39.21 5.34
531 1544 1.021202 TGGTCAAAGTTGAAGCACGG 58.979 50.000 0.00 0.00 39.21 4.94
532 1545 0.310854 GGTCAAAGTTGAAGCACGGG 59.689 55.000 0.00 0.00 39.21 5.28
533 1546 1.305201 GTCAAAGTTGAAGCACGGGA 58.695 50.000 0.00 0.00 39.21 5.14
534 1547 1.673920 GTCAAAGTTGAAGCACGGGAA 59.326 47.619 0.00 0.00 39.21 3.97
535 1548 2.293399 GTCAAAGTTGAAGCACGGGAAT 59.707 45.455 0.00 0.00 39.21 3.01
536 1549 3.500680 GTCAAAGTTGAAGCACGGGAATA 59.499 43.478 0.00 0.00 39.21 1.75
537 1550 3.751175 TCAAAGTTGAAGCACGGGAATAG 59.249 43.478 0.00 0.00 33.55 1.73
538 1551 3.695830 AAGTTGAAGCACGGGAATAGA 57.304 42.857 0.00 0.00 0.00 1.98
539 1552 3.252974 AGTTGAAGCACGGGAATAGAG 57.747 47.619 0.00 0.00 0.00 2.43
540 1553 2.832129 AGTTGAAGCACGGGAATAGAGA 59.168 45.455 0.00 0.00 0.00 3.10
541 1554 3.260884 AGTTGAAGCACGGGAATAGAGAA 59.739 43.478 0.00 0.00 0.00 2.87
542 1555 3.973206 TGAAGCACGGGAATAGAGAAA 57.027 42.857 0.00 0.00 0.00 2.52
543 1556 4.280436 TGAAGCACGGGAATAGAGAAAA 57.720 40.909 0.00 0.00 0.00 2.29
544 1557 4.253685 TGAAGCACGGGAATAGAGAAAAG 58.746 43.478 0.00 0.00 0.00 2.27
545 1558 2.633488 AGCACGGGAATAGAGAAAAGC 58.367 47.619 0.00 0.00 0.00 3.51
546 1559 2.027192 AGCACGGGAATAGAGAAAAGCA 60.027 45.455 0.00 0.00 0.00 3.91
547 1560 2.096013 GCACGGGAATAGAGAAAAGCAC 59.904 50.000 0.00 0.00 0.00 4.40
548 1561 3.600388 CACGGGAATAGAGAAAAGCACT 58.400 45.455 0.00 0.00 0.00 4.40
549 1562 4.755411 CACGGGAATAGAGAAAAGCACTA 58.245 43.478 0.00 0.00 0.00 2.74
550 1563 5.360591 CACGGGAATAGAGAAAAGCACTAT 58.639 41.667 0.00 0.00 32.65 2.12
551 1564 6.513180 CACGGGAATAGAGAAAAGCACTATA 58.487 40.000 0.00 0.00 31.32 1.31
552 1565 6.421202 CACGGGAATAGAGAAAAGCACTATAC 59.579 42.308 0.00 0.00 31.32 1.47
553 1566 6.324254 ACGGGAATAGAGAAAAGCACTATACT 59.676 38.462 0.00 0.00 31.32 2.12
554 1567 6.864165 CGGGAATAGAGAAAAGCACTATACTC 59.136 42.308 0.00 0.00 31.32 2.59
555 1568 7.470147 CGGGAATAGAGAAAAGCACTATACTCA 60.470 40.741 0.00 0.00 31.32 3.41
556 1569 8.371699 GGGAATAGAGAAAAGCACTATACTCAT 58.628 37.037 0.00 0.00 31.32 2.90
557 1570 9.418045 GGAATAGAGAAAAGCACTATACTCATC 57.582 37.037 0.00 0.00 31.32 2.92
560 1573 7.896383 AGAGAAAAGCACTATACTCATCTCT 57.104 36.000 0.00 0.00 35.73 3.10
561 1574 7.715657 AGAGAAAAGCACTATACTCATCTCTG 58.284 38.462 0.00 0.00 37.55 3.35
562 1575 7.341769 AGAGAAAAGCACTATACTCATCTCTGT 59.658 37.037 0.00 0.00 37.55 3.41
563 1576 7.488322 AGAAAAGCACTATACTCATCTCTGTC 58.512 38.462 0.00 0.00 0.00 3.51
564 1577 6.782082 AAAGCACTATACTCATCTCTGTCA 57.218 37.500 0.00 0.00 0.00 3.58
565 1578 6.389830 AAGCACTATACTCATCTCTGTCAG 57.610 41.667 0.00 0.00 0.00 3.51
566 1579 5.445069 AGCACTATACTCATCTCTGTCAGT 58.555 41.667 0.00 0.00 0.00 3.41
567 1580 5.890985 AGCACTATACTCATCTCTGTCAGTT 59.109 40.000 0.00 0.00 0.00 3.16
568 1581 6.379703 AGCACTATACTCATCTCTGTCAGTTT 59.620 38.462 0.00 0.00 0.00 2.66
569 1582 7.558081 AGCACTATACTCATCTCTGTCAGTTTA 59.442 37.037 0.00 0.00 0.00 2.01
570 1583 7.646130 GCACTATACTCATCTCTGTCAGTTTAC 59.354 40.741 0.00 0.00 0.00 2.01
571 1584 8.678199 CACTATACTCATCTCTGTCAGTTTACA 58.322 37.037 0.00 0.00 0.00 2.41
572 1585 9.244292 ACTATACTCATCTCTGTCAGTTTACAA 57.756 33.333 0.00 0.00 0.00 2.41
573 1586 9.729023 CTATACTCATCTCTGTCAGTTTACAAG 57.271 37.037 0.00 0.00 0.00 3.16
574 1587 6.656632 ACTCATCTCTGTCAGTTTACAAGA 57.343 37.500 0.00 0.00 0.00 3.02
575 1588 6.451393 ACTCATCTCTGTCAGTTTACAAGAC 58.549 40.000 0.00 0.00 0.00 3.01
576 1589 5.461526 TCATCTCTGTCAGTTTACAAGACG 58.538 41.667 0.00 0.00 35.09 4.18
577 1590 4.913335 TCTCTGTCAGTTTACAAGACGT 57.087 40.909 0.00 0.00 35.09 4.34
578 1591 6.206048 TCATCTCTGTCAGTTTACAAGACGTA 59.794 38.462 0.00 0.00 35.09 3.57
579 1592 5.755813 TCTCTGTCAGTTTACAAGACGTAC 58.244 41.667 0.00 0.00 35.09 3.67
580 1593 4.530388 TCTGTCAGTTTACAAGACGTACG 58.470 43.478 15.01 15.01 35.09 3.67
581 1594 4.035558 TCTGTCAGTTTACAAGACGTACGT 59.964 41.667 23.04 23.04 35.09 3.57
582 1595 4.037021 TGTCAGTTTACAAGACGTACGTG 58.963 43.478 28.16 14.38 35.09 4.49
583 1596 4.037690 GTCAGTTTACAAGACGTACGTGT 58.962 43.478 28.16 20.48 43.02 4.49
584 1597 5.204833 GTCAGTTTACAAGACGTACGTGTA 58.795 41.667 28.16 18.56 41.08 2.90
585 1598 5.114124 GTCAGTTTACAAGACGTACGTGTAC 59.886 44.000 28.16 16.02 41.51 2.90
586 1599 4.379793 CAGTTTACAAGACGTACGTGTACC 59.620 45.833 28.16 11.42 41.51 3.34
587 1600 3.552604 TTACAAGACGTACGTGTACCC 57.447 47.619 28.16 11.00 41.51 3.69
588 1601 1.609208 ACAAGACGTACGTGTACCCT 58.391 50.000 28.16 13.38 39.22 4.34
589 1602 1.267806 ACAAGACGTACGTGTACCCTG 59.732 52.381 28.16 18.60 39.22 4.45
590 1603 0.883833 AAGACGTACGTGTACCCTGG 59.116 55.000 28.16 0.00 32.61 4.45
591 1604 0.962356 AGACGTACGTGTACCCTGGG 60.962 60.000 28.16 12.28 32.61 4.45
592 1605 2.182537 CGTACGTGTACCCTGGGC 59.817 66.667 14.08 0.00 32.61 5.36
593 1606 2.580815 GTACGTGTACCCTGGGCC 59.419 66.667 14.08 4.12 0.00 5.80
594 1607 3.069946 TACGTGTACCCTGGGCCG 61.070 66.667 14.08 12.55 0.00 6.13
595 1608 3.884704 TACGTGTACCCTGGGCCGT 62.885 63.158 14.08 17.58 0.00 5.68
596 1609 4.446413 CGTGTACCCTGGGCCGTC 62.446 72.222 14.08 1.29 0.00 4.79
597 1610 3.315949 GTGTACCCTGGGCCGTCA 61.316 66.667 14.08 4.14 0.00 4.35
598 1611 2.527123 TGTACCCTGGGCCGTCAA 60.527 61.111 14.08 0.00 0.00 3.18
599 1612 1.921346 TGTACCCTGGGCCGTCAAT 60.921 57.895 14.08 0.00 0.00 2.57
600 1613 1.301954 GTACCCTGGGCCGTCAATT 59.698 57.895 14.08 0.00 0.00 2.32
601 1614 0.323087 GTACCCTGGGCCGTCAATTT 60.323 55.000 14.08 0.00 0.00 1.82
602 1615 1.065272 GTACCCTGGGCCGTCAATTTA 60.065 52.381 14.08 0.00 0.00 1.40
603 1616 0.406361 ACCCTGGGCCGTCAATTTAA 59.594 50.000 14.08 0.00 0.00 1.52
604 1617 0.815095 CCCTGGGCCGTCAATTTAAC 59.185 55.000 0.00 0.00 0.00 2.01
605 1618 0.815095 CCTGGGCCGTCAATTTAACC 59.185 55.000 0.00 0.00 0.00 2.85
606 1619 1.540267 CTGGGCCGTCAATTTAACCA 58.460 50.000 0.00 0.00 0.00 3.67
607 1620 1.889829 CTGGGCCGTCAATTTAACCAA 59.110 47.619 0.00 0.00 0.00 3.67
608 1621 1.889829 TGGGCCGTCAATTTAACCAAG 59.110 47.619 0.00 0.00 0.00 3.61
609 1622 2.164338 GGGCCGTCAATTTAACCAAGA 58.836 47.619 0.00 0.00 0.00 3.02
610 1623 2.758423 GGGCCGTCAATTTAACCAAGAT 59.242 45.455 0.00 0.00 0.00 2.40
611 1624 3.949113 GGGCCGTCAATTTAACCAAGATA 59.051 43.478 0.00 0.00 0.00 1.98
612 1625 4.399934 GGGCCGTCAATTTAACCAAGATAA 59.600 41.667 0.00 0.00 0.00 1.75
613 1626 5.337554 GGCCGTCAATTTAACCAAGATAAC 58.662 41.667 0.00 0.00 0.00 1.89
614 1627 5.106078 GGCCGTCAATTTAACCAAGATAACA 60.106 40.000 0.00 0.00 0.00 2.41
615 1628 6.405397 GGCCGTCAATTTAACCAAGATAACAT 60.405 38.462 0.00 0.00 0.00 2.71
616 1629 7.201750 GGCCGTCAATTTAACCAAGATAACATA 60.202 37.037 0.00 0.00 0.00 2.29
617 1630 8.185505 GCCGTCAATTTAACCAAGATAACATAA 58.814 33.333 0.00 0.00 0.00 1.90
618 1631 9.716507 CCGTCAATTTAACCAAGATAACATAAG 57.283 33.333 0.00 0.00 0.00 1.73
670 1683 9.573133 AACTTCAGATATTTTATTTTCAAGCGG 57.427 29.630 0.00 0.00 0.00 5.52
671 1684 8.739972 ACTTCAGATATTTTATTTTCAAGCGGT 58.260 29.630 0.00 0.00 0.00 5.68
749 1764 9.726232 GATATACGTGTATGACTTGTAAACTGA 57.274 33.333 9.77 0.00 0.00 3.41
753 1768 6.062646 CGTGTATGACTTGTAAACTGAAACG 58.937 40.000 0.00 0.00 0.00 3.60
758 1773 5.552807 TGACTTGTAAACTGAAACGAAACG 58.447 37.500 0.00 0.00 0.00 3.60
765 1780 5.385396 AAACTGAAACGAAACGAGTACTG 57.615 39.130 0.00 0.00 0.00 2.74
766 1781 4.037858 ACTGAAACGAAACGAGTACTGT 57.962 40.909 0.00 0.00 0.00 3.55
767 1782 5.173774 ACTGAAACGAAACGAGTACTGTA 57.826 39.130 0.00 0.00 0.00 2.74
768 1783 5.766222 ACTGAAACGAAACGAGTACTGTAT 58.234 37.500 0.00 0.00 0.00 2.29
769 1784 6.211515 ACTGAAACGAAACGAGTACTGTATT 58.788 36.000 0.00 0.00 0.00 1.89
770 1785 6.698766 ACTGAAACGAAACGAGTACTGTATTT 59.301 34.615 0.00 0.00 0.00 1.40
771 1786 7.223387 ACTGAAACGAAACGAGTACTGTATTTT 59.777 33.333 0.00 0.00 0.00 1.82
772 1787 7.339207 TGAAACGAAACGAGTACTGTATTTTG 58.661 34.615 0.00 4.59 0.00 2.44
773 1788 7.222417 TGAAACGAAACGAGTACTGTATTTTGA 59.778 33.333 0.00 0.00 0.00 2.69
774 1789 7.467557 AACGAAACGAGTACTGTATTTTGAA 57.532 32.000 0.00 0.00 0.00 2.69
775 1790 7.467557 ACGAAACGAGTACTGTATTTTGAAA 57.532 32.000 0.00 0.00 0.00 2.69
776 1791 8.080083 ACGAAACGAGTACTGTATTTTGAAAT 57.920 30.769 0.00 0.00 0.00 2.17
777 1792 8.007716 ACGAAACGAGTACTGTATTTTGAAATG 58.992 33.333 0.00 0.00 0.00 2.32
778 1793 7.477422 CGAAACGAGTACTGTATTTTGAAATGG 59.523 37.037 0.00 0.00 0.00 3.16
779 1794 7.972832 AACGAGTACTGTATTTTGAAATGGA 57.027 32.000 0.00 0.00 0.00 3.41
780 1795 7.596749 ACGAGTACTGTATTTTGAAATGGAG 57.403 36.000 0.00 0.00 0.00 3.86
781 1796 6.594159 ACGAGTACTGTATTTTGAAATGGAGG 59.406 38.462 0.00 0.00 0.00 4.30
782 1797 6.037172 CGAGTACTGTATTTTGAAATGGAGGG 59.963 42.308 0.00 0.00 0.00 4.30
1126 2147 1.869452 AACTCCTCCCCCTCCTCCT 60.869 63.158 0.00 0.00 0.00 3.69
1839 2862 2.888447 GCTCTGCCGGGCTGGATAT 61.888 63.158 23.42 0.00 42.00 1.63
1855 2878 2.477525 GGATATATCGAGGACGCGTTCC 60.478 54.545 15.53 16.33 46.33 3.62
2572 5469 1.077930 CCAGGGGAGTGCACAGATG 60.078 63.158 21.04 9.81 0.00 2.90
2674 5571 5.656416 TGGTCTCATTTTTGAACTTGTCCTT 59.344 36.000 0.00 0.00 0.00 3.36
2703 5600 6.798427 TCACTAGGAGATAGCAACTGAAAT 57.202 37.500 0.00 0.00 34.56 2.17
2812 5710 3.743396 GTGTCAACAGTTCTGGTCATCTC 59.257 47.826 4.82 0.00 0.00 2.75
2944 5842 2.657143 AGTTCCTGTCTCCGATACTCC 58.343 52.381 0.00 0.00 0.00 3.85
3021 5919 8.971073 ACTATAATGCTTGCAATATATTTCCCC 58.029 33.333 0.00 0.00 0.00 4.81
3087 6009 5.428184 AGCTTCTAGACTGCAAAAGGTAT 57.572 39.130 16.34 0.00 0.00 2.73
3130 6056 6.206243 GGCAAGATATAATGAAGTGCTCATGT 59.794 38.462 0.00 0.00 44.43 3.21
3131 6057 7.255381 GGCAAGATATAATGAAGTGCTCATGTT 60.255 37.037 0.00 0.00 44.43 2.71
3132 6058 7.590322 GCAAGATATAATGAAGTGCTCATGTTG 59.410 37.037 0.00 0.00 44.43 3.33
3133 6059 8.618677 CAAGATATAATGAAGTGCTCATGTTGT 58.381 33.333 0.00 0.00 44.43 3.32
3134 6060 8.151141 AGATATAATGAAGTGCTCATGTTGTG 57.849 34.615 0.00 0.00 44.43 3.33
3135 6061 3.928727 AATGAAGTGCTCATGTTGTGG 57.071 42.857 0.00 0.00 44.43 4.17
3136 6062 1.608055 TGAAGTGCTCATGTTGTGGG 58.392 50.000 0.00 0.00 0.00 4.61
3167 6093 7.335422 TGGCTGAAAGTTTTGCATTAAGAAAAA 59.665 29.630 13.84 0.00 32.19 1.94
3258 6186 4.023536 GCTTCGGTTCATTACTGGAACAAA 60.024 41.667 7.48 1.35 44.96 2.83
3288 6216 5.292589 AGCAGAACAAAAACAATCAAAGCAG 59.707 36.000 0.00 0.00 0.00 4.24
3310 6238 8.624776 AGCAGAGCATAAAATTATTCAGGTAAC 58.375 33.333 0.00 0.00 0.00 2.50
3327 6255 6.663093 TCAGGTAACCAAATGCACAATCTAAT 59.337 34.615 0.00 0.00 37.17 1.73
3337 6265 8.886719 CAAATGCACAATCTAATTGAGACTAGA 58.113 33.333 6.67 0.00 42.83 2.43
3383 6311 5.269505 CCAGTCCATGGTAAGAGTCTAAG 57.730 47.826 12.58 0.00 44.91 2.18
3384 6312 4.956700 CCAGTCCATGGTAAGAGTCTAAGA 59.043 45.833 12.58 0.00 44.91 2.10
3385 6313 5.068460 CCAGTCCATGGTAAGAGTCTAAGAG 59.932 48.000 12.58 0.00 44.91 2.85
3590 6519 2.223377 CACTCGTGGCCAAAGAAGTAAC 59.777 50.000 20.43 0.00 0.00 2.50
3618 6547 4.644685 AGCAACAACCATTTCTTGTACACT 59.355 37.500 0.00 0.00 31.43 3.55
3619 6548 4.739716 GCAACAACCATTTCTTGTACACTG 59.260 41.667 0.00 0.00 31.43 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.149578 CAAGTCTGGAGCCTGAACAAG 58.850 52.381 0.00 0.00 0.00 3.16
32 33 5.998363 AGGGATCAAAGTTGAAGTACAAGTC 59.002 40.000 0.00 0.00 40.75 3.01
33 34 5.765182 CAGGGATCAAAGTTGAAGTACAAGT 59.235 40.000 0.00 0.00 43.10 3.16
150 213 3.181499 GCAAGCATGGAAATCTGTCTCAG 60.181 47.826 0.00 0.00 0.00 3.35
153 216 2.097825 GGCAAGCATGGAAATCTGTCT 58.902 47.619 0.00 0.00 0.00 3.41
156 219 2.232941 AGTTGGCAAGCATGGAAATCTG 59.767 45.455 0.00 0.00 0.00 2.90
157 220 2.532843 AGTTGGCAAGCATGGAAATCT 58.467 42.857 0.00 0.00 0.00 2.40
163 226 3.319755 CAAGTTTAGTTGGCAAGCATGG 58.680 45.455 0.00 0.00 0.00 3.66
165 228 3.030668 GCAAGTTTAGTTGGCAAGCAT 57.969 42.857 0.00 0.00 0.00 3.79
192 260 3.115556 GGCAAGTTGTGTTCGCCA 58.884 55.556 4.48 0.00 42.50 5.69
193 261 0.878416 TATGGCAAGTTGTGTTCGCC 59.122 50.000 4.48 0.00 43.28 5.54
194 262 2.697431 TTATGGCAAGTTGTGTTCGC 57.303 45.000 4.48 0.00 0.00 4.70
218 287 8.962679 AGATTTTTAGGCATGGTAAAACGAATA 58.037 29.630 0.00 0.00 30.80 1.75
219 288 7.759433 CAGATTTTTAGGCATGGTAAAACGAAT 59.241 33.333 0.00 0.00 30.80 3.34
220 289 7.040340 TCAGATTTTTAGGCATGGTAAAACGAA 60.040 33.333 0.00 0.00 30.80 3.85
222 291 6.616947 TCAGATTTTTAGGCATGGTAAAACG 58.383 36.000 0.00 0.00 30.80 3.60
223 292 8.034804 ACATCAGATTTTTAGGCATGGTAAAAC 58.965 33.333 0.00 0.00 30.80 2.43
224 293 8.133024 ACATCAGATTTTTAGGCATGGTAAAA 57.867 30.769 0.00 0.00 0.00 1.52
225 294 7.716799 ACATCAGATTTTTAGGCATGGTAAA 57.283 32.000 0.00 0.00 0.00 2.01
226 295 7.716799 AACATCAGATTTTTAGGCATGGTAA 57.283 32.000 0.00 0.00 0.00 2.85
227 296 7.546358 CAAACATCAGATTTTTAGGCATGGTA 58.454 34.615 0.00 0.00 0.00 3.25
229 298 5.292589 GCAAACATCAGATTTTTAGGCATGG 59.707 40.000 0.00 0.00 0.00 3.66
230 299 6.035650 CAGCAAACATCAGATTTTTAGGCATG 59.964 38.462 6.96 0.00 0.00 4.06
247 1260 3.096092 GGACCCAAATATCCAGCAAACA 58.904 45.455 0.00 0.00 34.87 2.83
251 1264 2.580322 TCAAGGACCCAAATATCCAGCA 59.420 45.455 0.00 0.00 37.47 4.41
262 1275 8.129001 ACCACATATATATATCTCAAGGACCCA 58.871 37.037 2.03 0.00 0.00 4.51
263 1276 8.554490 ACCACATATATATATCTCAAGGACCC 57.446 38.462 2.03 0.00 0.00 4.46
281 1294 9.878667 TCGTCTTTATCTCAAAATAACCACATA 57.121 29.630 0.00 0.00 0.00 2.29
282 1295 8.665685 GTCGTCTTTATCTCAAAATAACCACAT 58.334 33.333 0.00 0.00 0.00 3.21
283 1296 7.876068 AGTCGTCTTTATCTCAAAATAACCACA 59.124 33.333 0.00 0.00 0.00 4.17
284 1297 8.252964 AGTCGTCTTTATCTCAAAATAACCAC 57.747 34.615 0.00 0.00 0.00 4.16
285 1298 8.717821 CAAGTCGTCTTTATCTCAAAATAACCA 58.282 33.333 0.00 0.00 0.00 3.67
286 1299 8.932791 TCAAGTCGTCTTTATCTCAAAATAACC 58.067 33.333 0.00 0.00 0.00 2.85
287 1300 9.742552 GTCAAGTCGTCTTTATCTCAAAATAAC 57.257 33.333 0.00 0.00 0.00 1.89
310 1323 8.806429 TCTATCAAATAGGCTTGAAAATGTCA 57.194 30.769 0.00 0.00 38.75 3.58
354 1367 5.656213 ATTGAAAATTCTCCTGGCAAGAG 57.344 39.130 6.78 6.78 0.00 2.85
355 1368 6.423776 AAATTGAAAATTCTCCTGGCAAGA 57.576 33.333 0.00 0.00 0.00 3.02
356 1369 6.707161 TCAAAATTGAAAATTCTCCTGGCAAG 59.293 34.615 0.00 0.00 33.55 4.01
357 1370 6.482973 GTCAAAATTGAAAATTCTCCTGGCAA 59.517 34.615 0.00 0.00 39.21 4.52
358 1371 5.990996 GTCAAAATTGAAAATTCTCCTGGCA 59.009 36.000 0.00 0.00 39.21 4.92
359 1372 5.409520 GGTCAAAATTGAAAATTCTCCTGGC 59.590 40.000 0.00 0.00 39.21 4.85
360 1373 6.523840 TGGTCAAAATTGAAAATTCTCCTGG 58.476 36.000 0.00 0.00 39.21 4.45
361 1374 9.709495 TTATGGTCAAAATTGAAAATTCTCCTG 57.291 29.630 0.00 0.00 39.21 3.86
375 1388 9.418045 CTCGTTGGTTAAATTTATGGTCAAAAT 57.582 29.630 0.00 0.00 0.00 1.82
376 1389 8.630917 TCTCGTTGGTTAAATTTATGGTCAAAA 58.369 29.630 0.00 0.00 0.00 2.44
377 1390 8.077386 GTCTCGTTGGTTAAATTTATGGTCAAA 58.923 33.333 0.00 0.00 0.00 2.69
378 1391 7.308710 GGTCTCGTTGGTTAAATTTATGGTCAA 60.309 37.037 0.00 0.00 0.00 3.18
379 1392 6.149807 GGTCTCGTTGGTTAAATTTATGGTCA 59.850 38.462 0.00 0.00 0.00 4.02
380 1393 6.549061 GGTCTCGTTGGTTAAATTTATGGTC 58.451 40.000 0.00 0.00 0.00 4.02
383 1396 6.411630 TCGGTCTCGTTGGTTAAATTTATG 57.588 37.500 0.00 0.00 37.69 1.90
384 1397 6.819649 TGATCGGTCTCGTTGGTTAAATTTAT 59.180 34.615 0.00 0.00 37.69 1.40
386 1399 4.998672 TGATCGGTCTCGTTGGTTAAATTT 59.001 37.500 0.00 0.00 37.69 1.82
388 1401 4.196626 TGATCGGTCTCGTTGGTTAAAT 57.803 40.909 0.00 0.00 37.69 1.40
389 1402 3.663995 TGATCGGTCTCGTTGGTTAAA 57.336 42.857 0.00 0.00 37.69 1.52
391 1404 3.243301 GCTATGATCGGTCTCGTTGGTTA 60.243 47.826 0.00 0.00 37.69 2.85
393 1406 1.067212 GCTATGATCGGTCTCGTTGGT 59.933 52.381 0.00 0.00 37.69 3.67
394 1407 1.772182 GCTATGATCGGTCTCGTTGG 58.228 55.000 0.00 0.00 37.69 3.77
395 1408 1.399572 CGCTATGATCGGTCTCGTTG 58.600 55.000 0.00 0.00 37.69 4.10
396 1409 0.311165 CCGCTATGATCGGTCTCGTT 59.689 55.000 0.00 0.00 41.85 3.85
399 1412 0.523966 CTCCCGCTATGATCGGTCTC 59.476 60.000 0.00 0.00 45.09 3.36
400 1413 0.110678 TCTCCCGCTATGATCGGTCT 59.889 55.000 0.00 0.00 45.09 3.85
401 1414 0.959553 TTCTCCCGCTATGATCGGTC 59.040 55.000 0.00 0.00 45.09 4.79
402 1415 1.633774 ATTCTCCCGCTATGATCGGT 58.366 50.000 0.66 0.00 45.09 4.69
403 1416 2.751166 AATTCTCCCGCTATGATCGG 57.249 50.000 0.00 0.00 46.05 4.18
453 1466 9.865321 AGCAAAAGTTATACTAGTGAATTCGTA 57.135 29.630 5.39 0.00 0.00 3.43
454 1467 8.773404 AGCAAAAGTTATACTAGTGAATTCGT 57.227 30.769 5.39 0.00 0.00 3.85
455 1468 8.328864 GGAGCAAAAGTTATACTAGTGAATTCG 58.671 37.037 5.39 0.00 0.00 3.34
456 1469 8.613482 GGGAGCAAAAGTTATACTAGTGAATTC 58.387 37.037 5.39 0.00 0.00 2.17
457 1470 7.280205 CGGGAGCAAAAGTTATACTAGTGAATT 59.720 37.037 5.39 0.00 0.00 2.17
458 1471 6.761714 CGGGAGCAAAAGTTATACTAGTGAAT 59.238 38.462 5.39 0.00 0.00 2.57
459 1472 6.103997 CGGGAGCAAAAGTTATACTAGTGAA 58.896 40.000 5.39 0.00 0.00 3.18
460 1473 5.657474 CGGGAGCAAAAGTTATACTAGTGA 58.343 41.667 5.39 0.00 0.00 3.41
461 1474 5.968387 CGGGAGCAAAAGTTATACTAGTG 57.032 43.478 5.39 0.00 0.00 2.74
485 1498 4.455917 TTAACTAACAAGACCGTTTGCG 57.544 40.909 0.00 0.00 37.95 4.85
486 1499 7.688478 AAATTTAACTAACAAGACCGTTTGC 57.312 32.000 0.00 0.00 0.00 3.68
488 1501 9.902196 CCATAAATTTAACTAACAAGACCGTTT 57.098 29.630 1.21 0.00 0.00 3.60
489 1502 9.070179 ACCATAAATTTAACTAACAAGACCGTT 57.930 29.630 1.21 0.00 0.00 4.44
490 1503 8.625786 ACCATAAATTTAACTAACAAGACCGT 57.374 30.769 1.21 0.00 0.00 4.83
491 1504 8.723311 TGACCATAAATTTAACTAACAAGACCG 58.277 33.333 1.21 0.00 0.00 4.79
501 1514 9.476202 GCTTCAACTTTGACCATAAATTTAACT 57.524 29.630 1.21 0.00 36.83 2.24
502 1515 9.255304 TGCTTCAACTTTGACCATAAATTTAAC 57.745 29.630 1.21 0.00 36.83 2.01
503 1516 9.255304 GTGCTTCAACTTTGACCATAAATTTAA 57.745 29.630 1.21 0.00 36.83 1.52
504 1517 7.593273 CGTGCTTCAACTTTGACCATAAATTTA 59.407 33.333 0.00 0.00 36.83 1.40
505 1518 6.420604 CGTGCTTCAACTTTGACCATAAATTT 59.579 34.615 0.00 0.00 36.83 1.82
506 1519 5.920273 CGTGCTTCAACTTTGACCATAAATT 59.080 36.000 0.00 0.00 36.83 1.82
507 1520 5.460646 CGTGCTTCAACTTTGACCATAAAT 58.539 37.500 0.00 0.00 36.83 1.40
508 1521 4.261405 CCGTGCTTCAACTTTGACCATAAA 60.261 41.667 0.00 0.00 36.83 1.40
509 1522 3.252215 CCGTGCTTCAACTTTGACCATAA 59.748 43.478 0.00 0.00 36.83 1.90
510 1523 2.811431 CCGTGCTTCAACTTTGACCATA 59.189 45.455 0.00 0.00 36.83 2.74
511 1524 1.608590 CCGTGCTTCAACTTTGACCAT 59.391 47.619 0.00 0.00 36.83 3.55
512 1525 1.021202 CCGTGCTTCAACTTTGACCA 58.979 50.000 0.00 0.00 36.83 4.02
513 1526 0.310854 CCCGTGCTTCAACTTTGACC 59.689 55.000 0.00 0.00 36.83 4.02
514 1527 1.305201 TCCCGTGCTTCAACTTTGAC 58.695 50.000 0.00 0.00 36.83 3.18
515 1528 2.045561 TTCCCGTGCTTCAACTTTGA 57.954 45.000 0.00 0.00 34.92 2.69
516 1529 3.751175 TCTATTCCCGTGCTTCAACTTTG 59.249 43.478 0.00 0.00 0.00 2.77
517 1530 4.003648 CTCTATTCCCGTGCTTCAACTTT 58.996 43.478 0.00 0.00 0.00 2.66
518 1531 3.260884 TCTCTATTCCCGTGCTTCAACTT 59.739 43.478 0.00 0.00 0.00 2.66
519 1532 2.832129 TCTCTATTCCCGTGCTTCAACT 59.168 45.455 0.00 0.00 0.00 3.16
520 1533 3.247006 TCTCTATTCCCGTGCTTCAAC 57.753 47.619 0.00 0.00 0.00 3.18
521 1534 3.973206 TTCTCTATTCCCGTGCTTCAA 57.027 42.857 0.00 0.00 0.00 2.69
522 1535 3.973206 TTTCTCTATTCCCGTGCTTCA 57.027 42.857 0.00 0.00 0.00 3.02
523 1536 3.064134 GCTTTTCTCTATTCCCGTGCTTC 59.936 47.826 0.00 0.00 0.00 3.86
524 1537 3.010420 GCTTTTCTCTATTCCCGTGCTT 58.990 45.455 0.00 0.00 0.00 3.91
525 1538 2.027192 TGCTTTTCTCTATTCCCGTGCT 60.027 45.455 0.00 0.00 0.00 4.40
526 1539 2.096013 GTGCTTTTCTCTATTCCCGTGC 59.904 50.000 0.00 0.00 0.00 5.34
527 1540 3.600388 AGTGCTTTTCTCTATTCCCGTG 58.400 45.455 0.00 0.00 0.00 4.94
528 1541 3.983044 AGTGCTTTTCTCTATTCCCGT 57.017 42.857 0.00 0.00 0.00 5.28
529 1542 6.750148 AGTATAGTGCTTTTCTCTATTCCCG 58.250 40.000 0.00 0.00 34.41 5.14
530 1543 7.727181 TGAGTATAGTGCTTTTCTCTATTCCC 58.273 38.462 0.00 0.00 34.41 3.97
531 1544 9.418045 GATGAGTATAGTGCTTTTCTCTATTCC 57.582 37.037 0.00 0.00 34.41 3.01
534 1547 9.586732 AGAGATGAGTATAGTGCTTTTCTCTAT 57.413 33.333 0.00 0.00 35.14 1.98
535 1548 8.845227 CAGAGATGAGTATAGTGCTTTTCTCTA 58.155 37.037 0.00 0.00 35.14 2.43
536 1549 7.341769 ACAGAGATGAGTATAGTGCTTTTCTCT 59.658 37.037 0.00 0.00 36.21 3.10
537 1550 7.488322 ACAGAGATGAGTATAGTGCTTTTCTC 58.512 38.462 0.00 0.00 0.00 2.87
538 1551 7.123397 TGACAGAGATGAGTATAGTGCTTTTCT 59.877 37.037 0.00 0.00 0.00 2.52
539 1552 7.261325 TGACAGAGATGAGTATAGTGCTTTTC 58.739 38.462 0.00 0.00 0.00 2.29
540 1553 7.093552 ACTGACAGAGATGAGTATAGTGCTTTT 60.094 37.037 10.08 0.00 0.00 2.27
541 1554 6.379703 ACTGACAGAGATGAGTATAGTGCTTT 59.620 38.462 10.08 0.00 0.00 3.51
542 1555 5.890985 ACTGACAGAGATGAGTATAGTGCTT 59.109 40.000 10.08 0.00 0.00 3.91
543 1556 5.445069 ACTGACAGAGATGAGTATAGTGCT 58.555 41.667 10.08 0.00 0.00 4.40
544 1557 5.766150 ACTGACAGAGATGAGTATAGTGC 57.234 43.478 10.08 0.00 0.00 4.40
545 1558 8.678199 TGTAAACTGACAGAGATGAGTATAGTG 58.322 37.037 10.08 0.00 0.00 2.74
546 1559 8.809468 TGTAAACTGACAGAGATGAGTATAGT 57.191 34.615 10.08 0.00 0.00 2.12
547 1560 9.729023 CTTGTAAACTGACAGAGATGAGTATAG 57.271 37.037 10.08 0.00 0.00 1.31
548 1561 9.462606 TCTTGTAAACTGACAGAGATGAGTATA 57.537 33.333 10.08 0.00 0.00 1.47
549 1562 8.247562 GTCTTGTAAACTGACAGAGATGAGTAT 58.752 37.037 10.08 0.00 0.00 2.12
550 1563 7.573283 CGTCTTGTAAACTGACAGAGATGAGTA 60.573 40.741 10.08 0.00 31.81 2.59
551 1564 6.451393 GTCTTGTAAACTGACAGAGATGAGT 58.549 40.000 10.08 0.00 0.00 3.41
552 1565 5.570973 CGTCTTGTAAACTGACAGAGATGAG 59.429 44.000 10.08 0.34 31.81 2.90
553 1566 5.009710 ACGTCTTGTAAACTGACAGAGATGA 59.990 40.000 10.08 0.00 33.03 2.92
554 1567 5.223382 ACGTCTTGTAAACTGACAGAGATG 58.777 41.667 10.08 8.20 33.89 2.90
555 1568 5.455056 ACGTCTTGTAAACTGACAGAGAT 57.545 39.130 10.08 0.00 0.00 2.75
556 1569 4.913335 ACGTCTTGTAAACTGACAGAGA 57.087 40.909 10.08 0.00 0.00 3.10
557 1570 4.611782 CGTACGTCTTGTAAACTGACAGAG 59.388 45.833 10.08 0.00 34.07 3.35
558 1571 4.035558 ACGTACGTCTTGTAAACTGACAGA 59.964 41.667 16.72 0.00 34.07 3.41
559 1572 4.145928 CACGTACGTCTTGTAAACTGACAG 59.854 45.833 19.94 0.00 34.07 3.51
560 1573 4.037021 CACGTACGTCTTGTAAACTGACA 58.963 43.478 19.94 0.00 34.07 3.58
561 1574 4.037690 ACACGTACGTCTTGTAAACTGAC 58.962 43.478 19.94 0.00 34.07 3.51
562 1575 4.291540 ACACGTACGTCTTGTAAACTGA 57.708 40.909 19.94 0.00 34.07 3.41
563 1576 4.379793 GGTACACGTACGTCTTGTAAACTG 59.620 45.833 19.94 5.77 36.94 3.16
564 1577 4.537015 GGTACACGTACGTCTTGTAAACT 58.463 43.478 19.94 0.00 36.94 2.66
565 1578 3.668656 GGGTACACGTACGTCTTGTAAAC 59.331 47.826 19.94 13.29 36.94 2.01
566 1579 3.568007 AGGGTACACGTACGTCTTGTAAA 59.432 43.478 19.94 0.00 36.94 2.01
567 1580 3.058293 CAGGGTACACGTACGTCTTGTAA 60.058 47.826 19.94 0.87 36.94 2.41
568 1581 2.483877 CAGGGTACACGTACGTCTTGTA 59.516 50.000 19.94 15.08 36.94 2.41
569 1582 1.267806 CAGGGTACACGTACGTCTTGT 59.732 52.381 19.94 16.17 36.94 3.16
570 1583 1.401931 CCAGGGTACACGTACGTCTTG 60.402 57.143 19.94 13.43 36.94 3.02
571 1584 0.883833 CCAGGGTACACGTACGTCTT 59.116 55.000 19.94 11.14 36.94 3.01
572 1585 0.962356 CCCAGGGTACACGTACGTCT 60.962 60.000 19.94 10.09 36.94 4.18
573 1586 1.508088 CCCAGGGTACACGTACGTC 59.492 63.158 19.94 7.55 36.94 4.34
574 1587 2.639327 GCCCAGGGTACACGTACGT 61.639 63.158 16.72 16.72 36.94 3.57
575 1588 2.182537 GCCCAGGGTACACGTACG 59.817 66.667 15.01 15.01 36.94 3.67
576 1589 2.580815 GGCCCAGGGTACACGTAC 59.419 66.667 7.55 0.00 35.40 3.67
577 1590 3.069946 CGGCCCAGGGTACACGTA 61.070 66.667 7.55 0.00 0.00 3.57
579 1592 4.446413 GACGGCCCAGGGTACACG 62.446 72.222 7.55 9.74 0.00 4.49
580 1593 2.193087 ATTGACGGCCCAGGGTACAC 62.193 60.000 7.55 0.00 0.00 2.90
581 1594 1.493854 AATTGACGGCCCAGGGTACA 61.494 55.000 7.55 0.00 0.00 2.90
582 1595 0.323087 AAATTGACGGCCCAGGGTAC 60.323 55.000 7.55 0.00 0.00 3.34
583 1596 1.287217 TAAATTGACGGCCCAGGGTA 58.713 50.000 7.55 0.00 0.00 3.69
584 1597 0.406361 TTAAATTGACGGCCCAGGGT 59.594 50.000 7.55 0.00 0.00 4.34
585 1598 0.815095 GTTAAATTGACGGCCCAGGG 59.185 55.000 0.00 0.00 0.00 4.45
586 1599 0.815095 GGTTAAATTGACGGCCCAGG 59.185 55.000 0.00 0.00 0.00 4.45
587 1600 1.540267 TGGTTAAATTGACGGCCCAG 58.460 50.000 0.00 0.00 0.00 4.45
588 1601 1.889829 CTTGGTTAAATTGACGGCCCA 59.110 47.619 0.00 0.00 0.00 5.36
589 1602 2.164338 TCTTGGTTAAATTGACGGCCC 58.836 47.619 0.00 0.00 0.00 5.80
590 1603 5.106078 TGTTATCTTGGTTAAATTGACGGCC 60.106 40.000 0.00 0.00 0.00 6.13
591 1604 5.945155 TGTTATCTTGGTTAAATTGACGGC 58.055 37.500 0.00 0.00 0.00 5.68
592 1605 9.716507 CTTATGTTATCTTGGTTAAATTGACGG 57.283 33.333 0.00 0.00 0.00 4.79
644 1657 9.573133 CCGCTTGAAAATAAAATATCTGAAGTT 57.427 29.630 0.00 0.00 0.00 2.66
645 1658 8.739972 ACCGCTTGAAAATAAAATATCTGAAGT 58.260 29.630 0.00 0.00 0.00 3.01
723 1736 9.726232 TCAGTTTACAAGTCATACACGTATATC 57.274 33.333 0.00 0.00 0.00 1.63
725 1738 9.911138 TTTCAGTTTACAAGTCATACACGTATA 57.089 29.630 0.00 0.00 0.00 1.47
726 1739 8.706035 GTTTCAGTTTACAAGTCATACACGTAT 58.294 33.333 0.00 0.00 0.00 3.06
727 1740 7.096518 CGTTTCAGTTTACAAGTCATACACGTA 60.097 37.037 0.00 0.00 0.00 3.57
728 1741 6.291955 CGTTTCAGTTTACAAGTCATACACGT 60.292 38.462 0.00 0.00 0.00 4.49
729 1742 6.062646 CGTTTCAGTTTACAAGTCATACACG 58.937 40.000 0.00 0.00 0.00 4.49
730 1743 7.169035 TCGTTTCAGTTTACAAGTCATACAC 57.831 36.000 0.00 0.00 0.00 2.90
731 1744 7.773864 TTCGTTTCAGTTTACAAGTCATACA 57.226 32.000 0.00 0.00 0.00 2.29
732 1745 7.317269 CGTTTCGTTTCAGTTTACAAGTCATAC 59.683 37.037 0.00 0.00 0.00 2.39
733 1746 7.222417 TCGTTTCGTTTCAGTTTACAAGTCATA 59.778 33.333 0.00 0.00 0.00 2.15
735 1748 5.348179 TCGTTTCGTTTCAGTTTACAAGTCA 59.652 36.000 0.00 0.00 0.00 3.41
736 1749 5.788467 TCGTTTCGTTTCAGTTTACAAGTC 58.212 37.500 0.00 0.00 0.00 3.01
738 1751 5.792631 ACTCGTTTCGTTTCAGTTTACAAG 58.207 37.500 0.00 0.00 0.00 3.16
741 1756 6.020360 ACAGTACTCGTTTCGTTTCAGTTTAC 60.020 38.462 0.00 0.00 0.00 2.01
745 1760 4.037858 ACAGTACTCGTTTCGTTTCAGT 57.962 40.909 0.00 0.00 0.00 3.41
747 1762 7.222417 TCAAAATACAGTACTCGTTTCGTTTCA 59.778 33.333 0.00 0.00 0.00 2.69
749 1764 7.467557 TCAAAATACAGTACTCGTTTCGTTT 57.532 32.000 0.00 0.00 0.00 3.60
753 1768 8.500773 TCCATTTCAAAATACAGTACTCGTTTC 58.499 33.333 0.00 0.00 0.00 2.78
758 1773 7.110155 TCCCTCCATTTCAAAATACAGTACTC 58.890 38.462 0.00 0.00 0.00 2.59
765 1780 9.628500 AATACTACTCCCTCCATTTCAAAATAC 57.372 33.333 0.00 0.00 0.00 1.89
767 1782 9.628500 GTAATACTACTCCCTCCATTTCAAAAT 57.372 33.333 0.00 0.00 0.00 1.82
768 1783 8.832735 AGTAATACTACTCCCTCCATTTCAAAA 58.167 33.333 0.00 0.00 32.61 2.44
769 1784 8.265055 CAGTAATACTACTCCCTCCATTTCAAA 58.735 37.037 0.00 0.00 36.14 2.69
770 1785 7.622081 TCAGTAATACTACTCCCTCCATTTCAA 59.378 37.037 0.00 0.00 36.14 2.69
771 1786 7.130099 TCAGTAATACTACTCCCTCCATTTCA 58.870 38.462 0.00 0.00 36.14 2.69
772 1787 7.598759 TCAGTAATACTACTCCCTCCATTTC 57.401 40.000 0.00 0.00 36.14 2.17
773 1788 7.624077 AGTTCAGTAATACTACTCCCTCCATTT 59.376 37.037 0.00 0.00 36.14 2.32
774 1789 7.133483 AGTTCAGTAATACTACTCCCTCCATT 58.867 38.462 0.00 0.00 36.14 3.16
775 1790 6.684538 AGTTCAGTAATACTACTCCCTCCAT 58.315 40.000 0.00 0.00 36.14 3.41
776 1791 6.088541 AGTTCAGTAATACTACTCCCTCCA 57.911 41.667 0.00 0.00 36.14 3.86
777 1792 6.207221 GCTAGTTCAGTAATACTACTCCCTCC 59.793 46.154 0.00 0.00 36.14 4.30
778 1793 6.999871 AGCTAGTTCAGTAATACTACTCCCTC 59.000 42.308 0.00 0.00 36.14 4.30
779 1794 6.773685 CAGCTAGTTCAGTAATACTACTCCCT 59.226 42.308 0.00 0.00 36.14 4.20
780 1795 6.771749 TCAGCTAGTTCAGTAATACTACTCCC 59.228 42.308 0.00 0.00 36.14 4.30
781 1796 7.804843 TCAGCTAGTTCAGTAATACTACTCC 57.195 40.000 0.00 0.00 36.14 3.85
782 1797 8.130469 GGTTCAGCTAGTTCAGTAATACTACTC 58.870 40.741 0.00 0.00 36.14 2.59
984 1999 2.835431 ATGGAGGAGAGTCGGCGG 60.835 66.667 7.21 0.00 0.00 6.13
1098 2116 2.034221 GAGGAGTTGGTGGTGGCC 59.966 66.667 0.00 0.00 0.00 5.36
1855 2878 2.184830 CCATGATGTCCAGCTGCCG 61.185 63.158 8.66 0.00 0.00 5.69
2238 5134 3.170362 CCCTCCTTTCCAGCACCA 58.830 61.111 0.00 0.00 0.00 4.17
2418 5314 1.145738 ACCAACCAGAAAGCCAGATGT 59.854 47.619 0.00 0.00 0.00 3.06
2572 5469 2.232750 CAGAGCACAGCTGTGTCAC 58.767 57.895 39.30 29.58 43.55 3.67
2674 5571 7.342026 TCAGTTGCTATCTCCTAGTGATACAAA 59.658 37.037 13.10 5.19 0.00 2.83
2703 5600 9.226606 CAGATTTCAGTATACCAGGTGTTTTAA 57.773 33.333 0.76 0.00 0.00 1.52
2812 5710 3.885484 AAGTTCTGCTGTTGACGAATG 57.115 42.857 0.00 0.00 0.00 2.67
2944 5842 0.247460 TGGACAGCAGACCTCGATTG 59.753 55.000 0.00 0.00 0.00 2.67
3021 5919 4.686191 AGAGCTAGGAAGGATTGACATG 57.314 45.455 0.00 0.00 0.00 3.21
3087 6009 1.227704 CTGTGTTACCGTGGTGGCA 60.228 57.895 0.72 0.00 43.94 4.92
3130 6056 0.685785 TTTCAGCCACAAGCCCACAA 60.686 50.000 0.00 0.00 45.47 3.33
3131 6057 1.076412 TTTCAGCCACAAGCCCACA 60.076 52.632 0.00 0.00 45.47 4.17
3132 6058 1.109323 ACTTTCAGCCACAAGCCCAC 61.109 55.000 0.00 0.00 45.47 4.61
3133 6059 0.396974 AACTTTCAGCCACAAGCCCA 60.397 50.000 0.00 0.00 45.47 5.36
3134 6060 0.752658 AAACTTTCAGCCACAAGCCC 59.247 50.000 0.00 0.00 45.47 5.19
3135 6061 2.204237 CAAAACTTTCAGCCACAAGCC 58.796 47.619 0.00 0.00 45.47 4.35
3136 6062 1.594397 GCAAAACTTTCAGCCACAAGC 59.406 47.619 0.00 0.00 44.25 4.01
3137 6063 2.891112 TGCAAAACTTTCAGCCACAAG 58.109 42.857 0.00 0.00 0.00 3.16
3235 6163 3.071479 TGTTCCAGTAATGAACCGAAGC 58.929 45.455 0.00 0.00 41.08 3.86
3258 6186 6.339730 TGATTGTTTTTGTTCTGCTTCATGT 58.660 32.000 0.00 0.00 0.00 3.21
3310 6238 6.860080 AGTCTCAATTAGATTGTGCATTTGG 58.140 36.000 0.00 0.00 41.02 3.28
3327 6255 4.014406 TGGTGCTTCGTATCTAGTCTCAA 58.986 43.478 0.00 0.00 0.00 3.02
3337 6265 3.206150 GGTTGATGATGGTGCTTCGTAT 58.794 45.455 0.00 0.00 0.00 3.06
3378 6306 3.838903 GGACCCCTTTGTTCTCTCTTAGA 59.161 47.826 0.00 0.00 0.00 2.10
3379 6307 3.841255 AGGACCCCTTTGTTCTCTCTTAG 59.159 47.826 0.00 0.00 0.00 2.18
3380 6308 3.870559 AGGACCCCTTTGTTCTCTCTTA 58.129 45.455 0.00 0.00 0.00 2.10
3381 6309 2.707554 AGGACCCCTTTGTTCTCTCTT 58.292 47.619 0.00 0.00 0.00 2.85
3382 6310 2.424684 AGGACCCCTTTGTTCTCTCT 57.575 50.000 0.00 0.00 0.00 3.10
3383 6311 4.846168 AATAGGACCCCTTTGTTCTCTC 57.154 45.455 0.00 0.00 34.61 3.20
3384 6312 5.600669 AAAATAGGACCCCTTTGTTCTCT 57.399 39.130 0.00 0.00 34.61 3.10
3385 6313 5.047306 CCAAAAATAGGACCCCTTTGTTCTC 60.047 44.000 0.00 0.00 34.61 2.87
3509 6438 2.835027 GCTCATCAGCTCATGACATCA 58.165 47.619 0.00 0.00 41.91 3.07
3590 6519 5.531634 ACAAGAAATGGTTGTTGCTGTATG 58.468 37.500 0.00 0.00 40.74 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.