Multiple sequence alignment - TraesCS2A01G555000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G555000 chr2A 100.000 2952 0 0 1 2952 759810677 759813628 0.000000e+00 5452
1 TraesCS2A01G555000 chr2D 89.371 1684 74 25 570 2187 631963728 631962084 0.000000e+00 2021
2 TraesCS2A01G555000 chr2D 94.085 541 23 4 2421 2952 631961898 631961358 0.000000e+00 813
3 TraesCS2A01G555000 chr2D 85.039 381 53 4 43 421 446532181 446531803 4.620000e-103 385
4 TraesCS2A01G555000 chr2D 95.484 155 6 1 418 572 631971627 631971474 2.270000e-61 246
5 TraesCS2A01G555000 chr1B 86.282 1662 106 55 418 2013 296811839 296810234 0.000000e+00 1694
6 TraesCS2A01G555000 chr2B 90.049 1236 53 17 772 1980 775373929 775372737 0.000000e+00 1537
7 TraesCS2A01G555000 chr2B 89.725 545 35 10 2418 2952 775371944 775371411 0.000000e+00 676
8 TraesCS2A01G555000 chr2B 91.647 419 32 2 1 417 745943485 745943068 7.090000e-161 577
9 TraesCS2A01G555000 chr2B 83.384 331 32 13 418 739 775374249 775373933 4.820000e-73 285
10 TraesCS2A01G555000 chr2B 94.737 76 4 0 2112 2187 775372675 775372600 5.170000e-23 119
11 TraesCS2A01G555000 chr1A 85.239 1233 83 38 418 1597 256985926 256984740 0.000000e+00 1177
12 TraesCS2A01G555000 chr1A 91.192 386 24 5 1601 1977 256984599 256984215 1.570000e-142 516
13 TraesCS2A01G555000 chr1A 90.977 133 11 1 2229 2360 256981817 256981685 8.410000e-41 178
14 TraesCS2A01G555000 chr1A 88.732 142 8 5 1975 2112 256982634 256982497 1.820000e-37 167
15 TraesCS2A01G555000 chr6D 92.112 393 28 2 22 414 41208535 41208146 4.300000e-153 551
16 TraesCS2A01G555000 chr3B 90.168 417 39 2 1 417 74978780 74979194 2.590000e-150 542
17 TraesCS2A01G555000 chr7B 89.647 425 40 3 1 423 190064778 190064356 3.350000e-149 538
18 TraesCS2A01G555000 chr7B 90.571 403 37 1 15 417 44761484 44761885 1.560000e-147 532
19 TraesCS2A01G555000 chr7B 84.697 379 55 3 43 420 679711751 679711375 2.780000e-100 375
20 TraesCS2A01G555000 chr4B 88.889 360 36 3 59 418 37412904 37413259 9.710000e-120 440
21 TraesCS2A01G555000 chr7D 87.778 360 41 2 60 417 464492953 464492595 4.550000e-113 418


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G555000 chr2A 759810677 759813628 2951 False 5452.00 5452 100.00000 1 2952 1 chr2A.!!$F1 2951
1 TraesCS2A01G555000 chr2D 631961358 631963728 2370 True 1417.00 2021 91.72800 570 2952 2 chr2D.!!$R3 2382
2 TraesCS2A01G555000 chr1B 296810234 296811839 1605 True 1694.00 1694 86.28200 418 2013 1 chr1B.!!$R1 1595
3 TraesCS2A01G555000 chr2B 775371411 775374249 2838 True 654.25 1537 89.47375 418 2952 4 chr2B.!!$R2 2534
4 TraesCS2A01G555000 chr1A 256981685 256985926 4241 True 509.50 1177 89.03500 418 2360 4 chr1A.!!$R1 1942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 278 0.107654 GGGCGAGCCAGTATTTGACT 60.108 55.0 16.65 0.0 39.82 3.41 F
1389 1472 0.113776 AACAGGTACTCCTCCCGTCA 59.886 55.0 0.00 0.0 43.07 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1708 1978 0.089022 CGTTCATCGTGTCGTCGTTG 59.911 55.0 0.0 0.0 34.52 4.10 R
2338 4768 0.170561 TTACGCTTCTGTCCTCGCTC 59.829 55.0 0.0 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.921004 GCCAACAATCATAAAAACTTGCA 57.079 34.783 0.00 0.00 0.00 4.08
23 24 5.919196 GCCAACAATCATAAAAACTTGCAG 58.081 37.500 0.00 0.00 0.00 4.41
24 25 5.615325 GCCAACAATCATAAAAACTTGCAGC 60.615 40.000 0.00 0.00 0.00 5.25
25 26 5.388682 CCAACAATCATAAAAACTTGCAGCG 60.389 40.000 0.00 0.00 0.00 5.18
26 27 4.870363 ACAATCATAAAAACTTGCAGCGT 58.130 34.783 0.00 0.00 0.00 5.07
27 28 6.007936 ACAATCATAAAAACTTGCAGCGTA 57.992 33.333 0.00 0.00 0.00 4.42
28 29 6.086222 ACAATCATAAAAACTTGCAGCGTAG 58.914 36.000 0.00 0.00 0.00 3.51
29 30 5.880054 ATCATAAAAACTTGCAGCGTAGT 57.120 34.783 0.00 0.00 0.00 2.73
30 31 5.029650 TCATAAAAACTTGCAGCGTAGTG 57.970 39.130 1.04 0.00 0.00 2.74
31 32 2.119671 AAAAACTTGCAGCGTAGTGC 57.880 45.000 1.04 0.22 44.27 4.40
40 41 3.264897 GCGTAGTGCATGCCGGAG 61.265 66.667 16.68 4.07 45.45 4.63
41 42 2.494445 CGTAGTGCATGCCGGAGA 59.506 61.111 16.68 0.00 0.00 3.71
42 43 1.068083 CGTAGTGCATGCCGGAGAT 59.932 57.895 16.68 0.00 0.00 2.75
43 44 1.217585 CGTAGTGCATGCCGGAGATG 61.218 60.000 16.68 7.69 0.00 2.90
44 45 1.227645 TAGTGCATGCCGGAGATGC 60.228 57.895 24.78 24.78 45.45 3.91
45 46 2.665008 TAGTGCATGCCGGAGATGCC 62.665 60.000 27.08 20.30 44.76 4.40
46 47 4.112433 TGCATGCCGGAGATGCCA 62.112 61.111 27.08 16.71 44.76 4.92
47 48 2.829914 GCATGCCGGAGATGCCAA 60.830 61.111 22.29 0.00 40.37 4.52
48 49 2.417257 GCATGCCGGAGATGCCAAA 61.417 57.895 22.29 0.00 40.37 3.28
49 50 1.947597 GCATGCCGGAGATGCCAAAA 61.948 55.000 22.29 0.00 40.37 2.44
50 51 0.531657 CATGCCGGAGATGCCAAAAA 59.468 50.000 5.05 0.00 35.94 1.94
51 52 0.532115 ATGCCGGAGATGCCAAAAAC 59.468 50.000 5.05 0.00 35.94 2.43
52 53 0.825425 TGCCGGAGATGCCAAAAACA 60.825 50.000 5.05 0.00 35.94 2.83
53 54 0.316841 GCCGGAGATGCCAAAAACAA 59.683 50.000 5.05 0.00 35.94 2.83
54 55 1.934849 GCCGGAGATGCCAAAAACAAC 60.935 52.381 5.05 0.00 35.94 3.32
55 56 1.339610 CCGGAGATGCCAAAAACAACA 59.660 47.619 0.00 0.00 35.94 3.33
56 57 2.607771 CCGGAGATGCCAAAAACAACAG 60.608 50.000 0.00 0.00 35.94 3.16
57 58 2.293122 CGGAGATGCCAAAAACAACAGA 59.707 45.455 0.00 0.00 35.94 3.41
58 59 3.642705 GGAGATGCCAAAAACAACAGAC 58.357 45.455 0.00 0.00 36.34 3.51
59 60 3.319122 GGAGATGCCAAAAACAACAGACT 59.681 43.478 0.00 0.00 36.34 3.24
60 61 4.518970 GGAGATGCCAAAAACAACAGACTA 59.481 41.667 0.00 0.00 36.34 2.59
61 62 5.183904 GGAGATGCCAAAAACAACAGACTAT 59.816 40.000 0.00 0.00 36.34 2.12
62 63 6.294731 GGAGATGCCAAAAACAACAGACTATT 60.295 38.462 0.00 0.00 36.34 1.73
63 64 7.054491 AGATGCCAAAAACAACAGACTATTT 57.946 32.000 0.00 0.00 0.00 1.40
64 65 8.177119 AGATGCCAAAAACAACAGACTATTTA 57.823 30.769 0.00 0.00 0.00 1.40
65 66 8.637986 AGATGCCAAAAACAACAGACTATTTAA 58.362 29.630 0.00 0.00 0.00 1.52
66 67 7.995463 TGCCAAAAACAACAGACTATTTAAC 57.005 32.000 0.00 0.00 0.00 2.01
67 68 7.548097 TGCCAAAAACAACAGACTATTTAACA 58.452 30.769 0.00 0.00 0.00 2.41
68 69 7.489757 TGCCAAAAACAACAGACTATTTAACAC 59.510 33.333 0.00 0.00 0.00 3.32
69 70 7.489757 GCCAAAAACAACAGACTATTTAACACA 59.510 33.333 0.00 0.00 0.00 3.72
70 71 9.528018 CCAAAAACAACAGACTATTTAACACAT 57.472 29.630 0.00 0.00 0.00 3.21
72 73 9.528018 AAAAACAACAGACTATTTAACACATGG 57.472 29.630 0.00 0.00 0.00 3.66
73 74 6.254281 ACAACAGACTATTTAACACATGGC 57.746 37.500 0.00 0.00 0.00 4.40
74 75 5.183140 ACAACAGACTATTTAACACATGGCC 59.817 40.000 0.00 0.00 0.00 5.36
75 76 3.938963 ACAGACTATTTAACACATGGCCG 59.061 43.478 0.00 0.00 0.00 6.13
76 77 4.188462 CAGACTATTTAACACATGGCCGA 58.812 43.478 0.00 0.00 0.00 5.54
77 78 4.034048 CAGACTATTTAACACATGGCCGAC 59.966 45.833 0.00 0.00 0.00 4.79
78 79 3.275999 ACTATTTAACACATGGCCGACC 58.724 45.455 0.00 0.00 0.00 4.79
87 88 3.734330 TGGCCGACCATGTACCAT 58.266 55.556 0.00 0.00 42.67 3.55
88 89 2.917804 TGGCCGACCATGTACCATA 58.082 52.632 0.00 0.00 42.67 2.74
89 90 1.205055 TGGCCGACCATGTACCATAA 58.795 50.000 0.00 0.00 42.67 1.90
90 91 1.771854 TGGCCGACCATGTACCATAAT 59.228 47.619 0.00 0.00 42.67 1.28
91 92 2.973406 TGGCCGACCATGTACCATAATA 59.027 45.455 0.00 0.00 42.67 0.98
92 93 3.585289 TGGCCGACCATGTACCATAATAT 59.415 43.478 0.00 0.00 42.67 1.28
93 94 4.778427 TGGCCGACCATGTACCATAATATA 59.222 41.667 0.00 0.00 42.67 0.86
94 95 5.105106 TGGCCGACCATGTACCATAATATAG 60.105 44.000 0.00 0.00 42.67 1.31
95 96 4.809426 GCCGACCATGTACCATAATATAGC 59.191 45.833 0.00 0.00 0.00 2.97
96 97 5.357257 CCGACCATGTACCATAATATAGCC 58.643 45.833 0.00 0.00 0.00 3.93
97 98 5.128827 CCGACCATGTACCATAATATAGCCT 59.871 44.000 0.00 0.00 0.00 4.58
98 99 6.322969 CCGACCATGTACCATAATATAGCCTA 59.677 42.308 0.00 0.00 0.00 3.93
99 100 7.147794 CCGACCATGTACCATAATATAGCCTAA 60.148 40.741 0.00 0.00 0.00 2.69
100 101 8.255206 CGACCATGTACCATAATATAGCCTAAA 58.745 37.037 0.00 0.00 0.00 1.85
101 102 9.601217 GACCATGTACCATAATATAGCCTAAAG 57.399 37.037 0.00 0.00 0.00 1.85
102 103 9.112658 ACCATGTACCATAATATAGCCTAAAGT 57.887 33.333 0.00 0.00 0.00 2.66
103 104 9.959721 CCATGTACCATAATATAGCCTAAAGTT 57.040 33.333 0.00 0.00 0.00 2.66
107 108 9.445878 GTACCATAATATAGCCTAAAGTTTCCC 57.554 37.037 0.00 0.00 0.00 3.97
108 109 8.289182 ACCATAATATAGCCTAAAGTTTCCCT 57.711 34.615 0.00 0.00 0.00 4.20
109 110 9.401496 ACCATAATATAGCCTAAAGTTTCCCTA 57.599 33.333 0.00 0.00 0.00 3.53
110 111 9.668497 CCATAATATAGCCTAAAGTTTCCCTAC 57.332 37.037 0.00 0.00 0.00 3.18
118 119 8.895141 AGCCTAAAGTTTCCCTACAATTAATT 57.105 30.769 0.00 0.00 0.00 1.40
119 120 9.984590 AGCCTAAAGTTTCCCTACAATTAATTA 57.015 29.630 0.00 0.00 0.00 1.40
126 127 9.682465 AGTTTCCCTACAATTAATTAGTCTTCC 57.318 33.333 0.00 0.00 0.00 3.46
127 128 9.457436 GTTTCCCTACAATTAATTAGTCTTCCA 57.543 33.333 0.00 0.00 0.00 3.53
129 130 9.627123 TTCCCTACAATTAATTAGTCTTCCATG 57.373 33.333 0.00 0.00 0.00 3.66
130 131 8.778059 TCCCTACAATTAATTAGTCTTCCATGT 58.222 33.333 0.00 0.00 0.00 3.21
131 132 9.408648 CCCTACAATTAATTAGTCTTCCATGTT 57.591 33.333 0.00 0.00 0.00 2.71
134 135 8.986477 ACAATTAATTAGTCTTCCATGTTTGC 57.014 30.769 0.00 0.00 0.00 3.68
135 136 8.806146 ACAATTAATTAGTCTTCCATGTTTGCT 58.194 29.630 0.00 0.00 0.00 3.91
136 137 9.079833 CAATTAATTAGTCTTCCATGTTTGCTG 57.920 33.333 0.00 0.00 0.00 4.41
137 138 5.649782 AATTAGTCTTCCATGTTTGCTGG 57.350 39.130 0.00 0.00 34.93 4.85
138 139 2.664402 AGTCTTCCATGTTTGCTGGT 57.336 45.000 0.00 0.00 35.19 4.00
139 140 3.788227 AGTCTTCCATGTTTGCTGGTA 57.212 42.857 0.00 0.00 35.19 3.25
140 141 4.098914 AGTCTTCCATGTTTGCTGGTAA 57.901 40.909 0.00 0.00 35.19 2.85
141 142 4.469657 AGTCTTCCATGTTTGCTGGTAAA 58.530 39.130 0.00 0.00 35.19 2.01
142 143 5.079643 AGTCTTCCATGTTTGCTGGTAAAT 58.920 37.500 0.00 0.00 35.19 1.40
143 144 6.245408 AGTCTTCCATGTTTGCTGGTAAATA 58.755 36.000 0.00 0.00 35.19 1.40
144 145 6.719370 AGTCTTCCATGTTTGCTGGTAAATAA 59.281 34.615 0.00 0.00 35.19 1.40
145 146 7.232534 AGTCTTCCATGTTTGCTGGTAAATAAA 59.767 33.333 0.00 0.00 35.19 1.40
146 147 7.870445 GTCTTCCATGTTTGCTGGTAAATAAAA 59.130 33.333 0.00 0.00 35.19 1.52
147 148 8.592809 TCTTCCATGTTTGCTGGTAAATAAAAT 58.407 29.630 0.00 0.00 35.19 1.82
148 149 8.545229 TTCCATGTTTGCTGGTAAATAAAATG 57.455 30.769 0.00 0.00 35.19 2.32
149 150 7.102346 TCCATGTTTGCTGGTAAATAAAATGG 58.898 34.615 0.00 0.00 35.19 3.16
150 151 7.038729 TCCATGTTTGCTGGTAAATAAAATGGA 60.039 33.333 0.00 0.00 35.19 3.41
151 152 7.278424 CCATGTTTGCTGGTAAATAAAATGGAG 59.722 37.037 0.00 0.00 0.00 3.86
152 153 7.531857 TGTTTGCTGGTAAATAAAATGGAGA 57.468 32.000 0.00 0.00 0.00 3.71
153 154 7.957002 TGTTTGCTGGTAAATAAAATGGAGAA 58.043 30.769 0.00 0.00 0.00 2.87
154 155 8.424918 TGTTTGCTGGTAAATAAAATGGAGAAA 58.575 29.630 0.00 0.00 0.00 2.52
155 156 9.267084 GTTTGCTGGTAAATAAAATGGAGAAAA 57.733 29.630 0.00 0.00 0.00 2.29
156 157 9.838339 TTTGCTGGTAAATAAAATGGAGAAAAA 57.162 25.926 0.00 0.00 0.00 1.94
158 159 9.651913 TGCTGGTAAATAAAATGGAGAAAAATC 57.348 29.630 0.00 0.00 0.00 2.17
159 160 9.098355 GCTGGTAAATAAAATGGAGAAAAATCC 57.902 33.333 0.00 0.00 40.03 3.01
165 166 5.582689 AAAATGGAGAAAAATCCTAGGCG 57.417 39.130 2.96 0.00 40.29 5.52
166 167 4.503714 AATGGAGAAAAATCCTAGGCGA 57.496 40.909 2.96 0.00 40.29 5.54
167 168 3.261981 TGGAGAAAAATCCTAGGCGAC 57.738 47.619 2.96 0.00 40.29 5.19
168 169 2.569853 TGGAGAAAAATCCTAGGCGACA 59.430 45.455 2.96 0.00 40.29 4.35
169 170 3.199946 TGGAGAAAAATCCTAGGCGACAT 59.800 43.478 2.96 0.00 40.29 3.06
170 171 4.407621 TGGAGAAAAATCCTAGGCGACATA 59.592 41.667 2.96 0.00 40.29 2.29
171 172 5.071788 TGGAGAAAAATCCTAGGCGACATAT 59.928 40.000 2.96 0.00 40.29 1.78
172 173 6.269077 TGGAGAAAAATCCTAGGCGACATATA 59.731 38.462 2.96 0.00 40.29 0.86
173 174 7.038302 TGGAGAAAAATCCTAGGCGACATATAT 60.038 37.037 2.96 0.00 40.29 0.86
174 175 7.278868 GGAGAAAAATCCTAGGCGACATATATG 59.721 40.741 11.29 11.29 36.35 1.78
175 176 7.106239 AGAAAAATCCTAGGCGACATATATGG 58.894 38.462 16.96 1.41 0.00 2.74
176 177 6.374417 AAAATCCTAGGCGACATATATGGT 57.626 37.500 16.96 2.89 0.00 3.55
177 178 7.490657 AAAATCCTAGGCGACATATATGGTA 57.509 36.000 16.96 0.50 0.00 3.25
178 179 7.490657 AAATCCTAGGCGACATATATGGTAA 57.509 36.000 16.96 0.00 0.00 2.85
179 180 7.676683 AATCCTAGGCGACATATATGGTAAT 57.323 36.000 16.96 0.00 0.00 1.89
180 181 8.777578 AATCCTAGGCGACATATATGGTAATA 57.222 34.615 16.96 2.99 0.00 0.98
181 182 8.777578 ATCCTAGGCGACATATATGGTAATAA 57.222 34.615 16.96 0.00 0.00 1.40
182 183 8.598202 TCCTAGGCGACATATATGGTAATAAA 57.402 34.615 16.96 0.00 0.00 1.40
183 184 9.209048 TCCTAGGCGACATATATGGTAATAAAT 57.791 33.333 16.96 0.00 0.00 1.40
184 185 9.832445 CCTAGGCGACATATATGGTAATAAATT 57.168 33.333 16.96 0.00 0.00 1.82
242 243 9.840427 ATTTAACATAATTGTATTATGCCGAGC 57.160 29.630 15.72 0.00 36.19 5.03
243 244 5.880054 ACATAATTGTATTATGCCGAGCC 57.120 39.130 15.72 0.00 36.19 4.70
244 245 5.312895 ACATAATTGTATTATGCCGAGCCA 58.687 37.500 15.72 0.00 36.19 4.75
245 246 5.945784 ACATAATTGTATTATGCCGAGCCAT 59.054 36.000 15.72 0.00 36.19 4.40
246 247 6.094048 ACATAATTGTATTATGCCGAGCCATC 59.906 38.462 15.72 0.00 36.19 3.51
247 248 9.004328 ACATAATTGTATTATGCCGAGCCATCG 62.004 40.741 15.72 0.00 40.38 3.84
259 260 0.529833 AGCCATCGAGCTCATATCGG 59.470 55.000 15.40 11.12 39.48 4.18
260 261 0.459237 GCCATCGAGCTCATATCGGG 60.459 60.000 15.40 6.98 40.54 5.14
261 262 0.459237 CCATCGAGCTCATATCGGGC 60.459 60.000 15.40 0.00 40.54 6.13
262 263 0.799917 CATCGAGCTCATATCGGGCG 60.800 60.000 15.40 0.00 40.54 6.13
263 264 0.960861 ATCGAGCTCATATCGGGCGA 60.961 55.000 15.40 2.39 40.54 5.54
264 265 1.154131 CGAGCTCATATCGGGCGAG 60.154 63.158 15.40 0.00 36.54 5.03
266 267 2.433318 GCTCATATCGGGCGAGCC 60.433 66.667 5.37 5.37 45.14 4.70
267 268 3.051210 CTCATATCGGGCGAGCCA 58.949 61.111 16.65 0.00 37.98 4.75
268 269 1.080230 CTCATATCGGGCGAGCCAG 60.080 63.158 16.65 12.31 37.98 4.85
269 270 1.810606 CTCATATCGGGCGAGCCAGT 61.811 60.000 16.65 5.65 37.98 4.00
270 271 0.538746 TCATATCGGGCGAGCCAGTA 60.539 55.000 16.65 7.56 37.98 2.74
271 272 0.532573 CATATCGGGCGAGCCAGTAT 59.467 55.000 16.65 9.34 37.98 2.12
272 273 1.066858 CATATCGGGCGAGCCAGTATT 60.067 52.381 16.65 4.71 37.98 1.89
273 274 1.045407 TATCGGGCGAGCCAGTATTT 58.955 50.000 16.65 2.45 37.98 1.40
274 275 0.532862 ATCGGGCGAGCCAGTATTTG 60.533 55.000 16.65 0.00 37.98 2.32
275 276 1.153449 CGGGCGAGCCAGTATTTGA 60.153 57.895 16.65 0.00 37.98 2.69
276 277 1.429148 CGGGCGAGCCAGTATTTGAC 61.429 60.000 16.65 0.00 37.98 3.18
277 278 0.107654 GGGCGAGCCAGTATTTGACT 60.108 55.000 16.65 0.00 39.82 3.41
278 279 1.291132 GGCGAGCCAGTATTTGACTC 58.709 55.000 9.58 0.00 35.64 3.36
279 280 1.405526 GGCGAGCCAGTATTTGACTCA 60.406 52.381 9.58 0.00 36.19 3.41
280 281 2.346803 GCGAGCCAGTATTTGACTCAA 58.653 47.619 0.00 0.00 36.19 3.02
281 282 2.349886 GCGAGCCAGTATTTGACTCAAG 59.650 50.000 0.00 0.00 36.19 3.02
282 283 3.849911 CGAGCCAGTATTTGACTCAAGA 58.150 45.455 0.00 0.00 36.19 3.02
283 284 4.437239 CGAGCCAGTATTTGACTCAAGAT 58.563 43.478 0.00 0.00 36.19 2.40
284 285 4.505922 CGAGCCAGTATTTGACTCAAGATC 59.494 45.833 0.00 0.00 36.19 2.75
285 286 5.423015 GAGCCAGTATTTGACTCAAGATCA 58.577 41.667 0.00 0.00 36.42 2.92
286 287 5.426504 AGCCAGTATTTGACTCAAGATCAG 58.573 41.667 0.00 0.00 35.64 2.90
287 288 4.034975 GCCAGTATTTGACTCAAGATCAGC 59.965 45.833 0.00 0.00 35.64 4.26
288 289 5.426504 CCAGTATTTGACTCAAGATCAGCT 58.573 41.667 0.00 0.00 35.64 4.24
289 290 5.523188 CCAGTATTTGACTCAAGATCAGCTC 59.477 44.000 0.00 0.00 35.64 4.09
290 291 5.231779 CAGTATTTGACTCAAGATCAGCTCG 59.768 44.000 0.00 0.00 35.64 5.03
291 292 3.667497 TTTGACTCAAGATCAGCTCGT 57.333 42.857 0.00 0.00 0.00 4.18
292 293 3.667497 TTGACTCAAGATCAGCTCGTT 57.333 42.857 0.00 0.00 0.00 3.85
293 294 3.667497 TGACTCAAGATCAGCTCGTTT 57.333 42.857 0.00 0.00 0.00 3.60
294 295 3.579709 TGACTCAAGATCAGCTCGTTTC 58.420 45.455 0.00 0.00 0.00 2.78
295 296 3.256879 TGACTCAAGATCAGCTCGTTTCT 59.743 43.478 0.00 0.00 0.00 2.52
296 297 3.843999 ACTCAAGATCAGCTCGTTTCTC 58.156 45.455 0.00 0.00 0.00 2.87
297 298 3.256879 ACTCAAGATCAGCTCGTTTCTCA 59.743 43.478 0.00 0.00 0.00 3.27
298 299 4.240888 CTCAAGATCAGCTCGTTTCTCAA 58.759 43.478 0.00 0.00 0.00 3.02
299 300 3.990469 TCAAGATCAGCTCGTTTCTCAAC 59.010 43.478 0.00 0.00 0.00 3.18
300 301 3.951775 AGATCAGCTCGTTTCTCAACT 57.048 42.857 0.00 0.00 0.00 3.16
301 302 3.583806 AGATCAGCTCGTTTCTCAACTG 58.416 45.455 0.00 0.00 0.00 3.16
302 303 3.256879 AGATCAGCTCGTTTCTCAACTGA 59.743 43.478 0.00 0.00 38.42 3.41
303 304 3.018598 TCAGCTCGTTTCTCAACTGAG 57.981 47.619 0.00 0.00 43.36 3.35
305 306 1.789506 GCTCGTTTCTCAACTGAGCT 58.210 50.000 17.20 0.00 45.74 4.09
306 307 2.947852 GCTCGTTTCTCAACTGAGCTA 58.052 47.619 17.20 0.00 45.74 3.32
307 308 3.516615 GCTCGTTTCTCAACTGAGCTAT 58.483 45.455 17.20 0.00 45.74 2.97
308 309 3.929610 GCTCGTTTCTCAACTGAGCTATT 59.070 43.478 17.20 0.00 45.74 1.73
309 310 4.201666 GCTCGTTTCTCAACTGAGCTATTG 60.202 45.833 17.20 0.00 45.74 1.90
310 311 5.134202 TCGTTTCTCAACTGAGCTATTGA 57.866 39.130 1.61 7.19 41.80 2.57
311 312 5.538118 TCGTTTCTCAACTGAGCTATTGAA 58.462 37.500 1.61 0.00 41.80 2.69
312 313 5.989168 TCGTTTCTCAACTGAGCTATTGAAA 59.011 36.000 1.61 4.65 41.80 2.69
313 314 6.146184 TCGTTTCTCAACTGAGCTATTGAAAG 59.854 38.462 1.61 0.44 41.80 2.62
314 315 6.073548 CGTTTCTCAACTGAGCTATTGAAAGT 60.074 38.462 1.61 0.00 41.80 2.66
315 316 6.791887 TTCTCAACTGAGCTATTGAAAGTG 57.208 37.500 1.61 0.00 41.80 3.16
316 317 5.858381 TCTCAACTGAGCTATTGAAAGTGT 58.142 37.500 1.61 0.00 41.80 3.55
317 318 6.291377 TCTCAACTGAGCTATTGAAAGTGTT 58.709 36.000 1.61 0.00 41.80 3.32
318 319 6.425114 TCTCAACTGAGCTATTGAAAGTGTTC 59.575 38.462 1.61 0.00 41.80 3.18
319 320 6.054941 TCAACTGAGCTATTGAAAGTGTTCA 58.945 36.000 5.32 0.00 42.12 3.18
320 321 7.254898 CTCAACTGAGCTATTGAAAGTGTTCAA 60.255 37.037 4.49 4.49 44.56 2.69
329 330 4.882671 TGAAAGTGTTCAAACTCAGCTC 57.117 40.909 0.00 0.00 40.87 4.09
330 331 4.260985 TGAAAGTGTTCAAACTCAGCTCA 58.739 39.130 0.00 0.00 40.87 4.26
331 332 4.883585 TGAAAGTGTTCAAACTCAGCTCAT 59.116 37.500 0.00 0.00 40.87 2.90
332 333 5.357878 TGAAAGTGTTCAAACTCAGCTCATT 59.642 36.000 0.00 0.00 40.87 2.57
333 334 5.841957 AAGTGTTCAAACTCAGCTCATTT 57.158 34.783 0.00 0.00 0.00 2.32
334 335 6.942532 AAGTGTTCAAACTCAGCTCATTTA 57.057 33.333 0.00 0.00 0.00 1.40
335 336 7.516198 AAGTGTTCAAACTCAGCTCATTTAT 57.484 32.000 0.00 0.00 0.00 1.40
336 337 7.516198 AGTGTTCAAACTCAGCTCATTTATT 57.484 32.000 0.00 0.00 0.00 1.40
337 338 7.945134 AGTGTTCAAACTCAGCTCATTTATTT 58.055 30.769 0.00 0.00 0.00 1.40
338 339 8.416329 AGTGTTCAAACTCAGCTCATTTATTTT 58.584 29.630 0.00 0.00 0.00 1.82
339 340 9.034544 GTGTTCAAACTCAGCTCATTTATTTTT 57.965 29.630 0.00 0.00 0.00 1.94
360 361 6.642683 TTTTAATCAATCTCGAGTCGAACC 57.357 37.500 17.27 0.00 34.74 3.62
361 362 3.868757 AATCAATCTCGAGTCGAACCA 57.131 42.857 17.27 3.83 34.74 3.67
362 363 3.868757 ATCAATCTCGAGTCGAACCAA 57.131 42.857 17.27 2.99 34.74 3.67
363 364 3.653539 TCAATCTCGAGTCGAACCAAA 57.346 42.857 17.27 0.00 34.74 3.28
364 365 3.985008 TCAATCTCGAGTCGAACCAAAA 58.015 40.909 17.27 0.00 34.74 2.44
365 366 4.373527 TCAATCTCGAGTCGAACCAAAAA 58.626 39.130 17.27 0.00 34.74 1.94
388 389 2.513897 TCGATCTCGAGCGGCTCA 60.514 61.111 27.83 14.76 44.22 4.26
389 390 1.894282 TCGATCTCGAGCGGCTCAT 60.894 57.895 27.83 15.04 44.22 2.90
390 391 1.728778 CGATCTCGAGCGGCTCATG 60.729 63.158 27.83 19.15 43.02 3.07
391 392 1.656998 GATCTCGAGCGGCTCATGA 59.343 57.895 27.83 23.16 0.00 3.07
392 393 0.387112 GATCTCGAGCGGCTCATGAG 60.387 60.000 27.83 24.40 0.00 2.90
410 411 2.247790 GCCTCGAGCTTTTCTTGCA 58.752 52.632 6.99 0.00 38.99 4.08
411 412 0.167689 GCCTCGAGCTTTTCTTGCAG 59.832 55.000 6.99 0.00 38.99 4.41
412 413 0.167689 CCTCGAGCTTTTCTTGCAGC 59.832 55.000 6.99 0.00 36.16 5.25
413 414 0.167689 CTCGAGCTTTTCTTGCAGCC 59.832 55.000 0.00 0.00 36.62 4.85
414 415 1.211190 CGAGCTTTTCTTGCAGCCC 59.789 57.895 0.00 0.00 36.62 5.19
415 416 1.239968 CGAGCTTTTCTTGCAGCCCT 61.240 55.000 0.00 0.00 36.62 5.19
416 417 1.826385 GAGCTTTTCTTGCAGCCCTA 58.174 50.000 0.00 0.00 36.62 3.53
421 422 3.614092 CTTTTCTTGCAGCCCTAGATGA 58.386 45.455 0.00 0.00 0.00 2.92
483 484 1.211457 GTGGAATGAGCTCTGGACCAT 59.789 52.381 16.19 0.00 0.00 3.55
512 513 8.176216 AGAAAAGGATAAGGGTTATTTCCTCT 57.824 34.615 0.00 0.00 32.59 3.69
733 754 7.758613 GTTTTGACGAAAACCCTGAAAATTA 57.241 32.000 0.00 0.00 43.54 1.40
756 777 4.116961 GCAACCATGCGTGTAGAATAGTA 58.883 43.478 4.96 0.00 43.83 1.82
757 778 4.025979 GCAACCATGCGTGTAGAATAGTAC 60.026 45.833 4.96 0.00 43.83 2.73
758 779 5.348986 CAACCATGCGTGTAGAATAGTACT 58.651 41.667 4.96 0.00 0.00 2.73
759 780 6.500910 CAACCATGCGTGTAGAATAGTACTA 58.499 40.000 4.77 4.77 0.00 1.82
760 781 6.069684 ACCATGCGTGTAGAATAGTACTAC 57.930 41.667 4.31 0.00 40.13 2.73
762 783 6.017275 ACCATGCGTGTAGAATAGTACTACTC 60.017 42.308 4.31 3.65 40.30 2.59
763 784 5.998454 TGCGTGTAGAATAGTACTACTCC 57.002 43.478 7.72 0.00 40.30 3.85
862 898 2.682856 CTGCCGCCTTTTAGCATTCTTA 59.317 45.455 0.00 0.00 35.64 2.10
863 899 3.085533 TGCCGCCTTTTAGCATTCTTAA 58.914 40.909 0.00 0.00 0.00 1.85
864 900 3.699038 TGCCGCCTTTTAGCATTCTTAAT 59.301 39.130 0.00 0.00 0.00 1.40
918 968 4.339814 TGGATTGTTAAGCGAAAACAGGTT 59.660 37.500 0.00 0.00 38.05 3.50
922 972 2.619646 GTTAAGCGAAAACAGGTTCCCA 59.380 45.455 0.00 0.00 0.00 4.37
953 1012 5.782047 AGATCGAAGGAGCTCAGATTATTG 58.218 41.667 17.19 1.64 32.26 1.90
971 1030 0.874390 TGCTCTGATTTTCACACGCC 59.126 50.000 0.00 0.00 0.00 5.68
1382 1465 1.002087 CGCCTTCAAACAGGTACTCCT 59.998 52.381 0.00 0.00 46.37 3.69
1383 1466 2.701107 GCCTTCAAACAGGTACTCCTC 58.299 52.381 0.00 0.00 43.07 3.71
1389 1472 0.113776 AACAGGTACTCCTCCCGTCA 59.886 55.000 0.00 0.00 43.07 4.35
1399 1482 1.002087 TCCTCCCGTCAGAAAAAGCTC 59.998 52.381 0.00 0.00 0.00 4.09
1421 1518 2.401583 TCCTCAAATGGATGTGACCG 57.598 50.000 0.00 0.00 0.00 4.79
1428 1525 4.454161 TCAAATGGATGTGACCGTTAACAG 59.546 41.667 6.39 0.00 38.08 3.16
1442 1540 5.458779 ACCGTTAACAGTTGTACTACGAAAC 59.541 40.000 6.39 4.99 32.04 2.78
1443 1541 5.687285 CCGTTAACAGTTGTACTACGAAACT 59.313 40.000 6.39 0.00 34.52 2.66
1577 1678 0.317436 CGCGGAGAGTGTATCAGCTC 60.317 60.000 0.00 0.00 35.97 4.09
1586 1687 1.050988 TGTATCAGCTCAGCCCTCCC 61.051 60.000 0.00 0.00 0.00 4.30
1627 1873 8.635765 TGTTCCTCAATTTCTGCTTATACTTT 57.364 30.769 0.00 0.00 0.00 2.66
1640 1901 8.358895 TCTGCTTATACTTTCTCTGATCTGATG 58.641 37.037 2.43 0.00 0.00 3.07
1649 1910 5.056894 TCTCTGATCTGATGTATGATGCG 57.943 43.478 2.43 0.00 0.00 4.73
1663 1933 2.766313 TGATGCGGTATAATGCAGGAC 58.234 47.619 6.34 2.33 45.52 3.85
1858 2128 2.273449 GGCACTGAGGTCATGGGG 59.727 66.667 0.00 0.00 0.00 4.96
1944 2217 1.202348 GATTGCCAACAAGTACCCAGC 59.798 52.381 0.00 0.00 39.69 4.85
1973 2246 2.113860 TGGTTAGATGGCTTCAGTGC 57.886 50.000 3.03 0.00 0.00 4.40
2115 3999 1.906105 TACGGTCTGGTTGATGGCCC 61.906 60.000 0.00 0.00 0.00 5.80
2121 4005 2.092429 GTCTGGTTGATGGCCCTGATTA 60.092 50.000 0.00 0.00 32.29 1.75
2155 4039 2.671596 CCGATTTGGTGCGAAATGTTT 58.328 42.857 0.00 0.00 0.00 2.83
2214 4627 4.020039 ACAGAACCATACAACGGTGGAATA 60.020 41.667 4.97 0.00 38.86 1.75
2268 4698 7.281774 CAGGTCTTTATCATACTGCTGATTGTT 59.718 37.037 0.00 0.00 37.13 2.83
2373 4803 1.134521 CGTAAGGCTGCCTGTAATGGA 60.135 52.381 24.16 0.00 32.13 3.41
2389 4931 0.108186 TGGAGGCATGCTTGTACTCG 60.108 55.000 18.92 0.00 32.90 4.18
2395 4937 1.739035 GCATGCTTGTACTCGCCTACA 60.739 52.381 11.37 0.00 0.00 2.74
2397 4939 1.541379 TGCTTGTACTCGCCTACAGA 58.459 50.000 0.00 0.00 0.00 3.41
2398 4940 2.100197 TGCTTGTACTCGCCTACAGAT 58.900 47.619 0.00 0.00 0.00 2.90
2399 4941 2.099263 TGCTTGTACTCGCCTACAGATC 59.901 50.000 0.00 0.00 0.00 2.75
2400 4942 2.544069 GCTTGTACTCGCCTACAGATCC 60.544 54.545 0.00 0.00 0.00 3.36
2401 4943 1.688772 TGTACTCGCCTACAGATCCC 58.311 55.000 0.00 0.00 0.00 3.85
2402 4944 1.064240 TGTACTCGCCTACAGATCCCA 60.064 52.381 0.00 0.00 0.00 4.37
2403 4945 2.029623 GTACTCGCCTACAGATCCCAA 58.970 52.381 0.00 0.00 0.00 4.12
2404 4946 1.568504 ACTCGCCTACAGATCCCAAA 58.431 50.000 0.00 0.00 0.00 3.28
2405 4947 1.906574 ACTCGCCTACAGATCCCAAAA 59.093 47.619 0.00 0.00 0.00 2.44
2475 5094 2.507471 TCAAAACACCAAATTTGCCCCT 59.493 40.909 12.92 0.00 36.66 4.79
2477 5096 4.164221 TCAAAACACCAAATTTGCCCCTTA 59.836 37.500 12.92 0.00 36.66 2.69
2479 5098 3.252554 ACACCAAATTTGCCCCTTAGA 57.747 42.857 12.92 0.00 0.00 2.10
2482 5101 2.567169 ACCAAATTTGCCCCTTAGAAGC 59.433 45.455 12.92 0.00 0.00 3.86
2484 5103 4.023291 CCAAATTTGCCCCTTAGAAGCTA 58.977 43.478 12.92 0.00 0.00 3.32
2486 5105 4.592997 AATTTGCCCCTTAGAAGCTAGT 57.407 40.909 0.00 0.00 0.00 2.57
2487 5106 4.592997 ATTTGCCCCTTAGAAGCTAGTT 57.407 40.909 0.00 0.00 0.00 2.24
2488 5107 3.629142 TTGCCCCTTAGAAGCTAGTTC 57.371 47.619 0.00 0.00 35.08 3.01
2492 5111 2.101082 CCCCTTAGAAGCTAGTTCGACC 59.899 54.545 0.00 0.00 40.49 4.79
2644 5271 4.020839 TGATCACAATCTGCTCTGTTCAGA 60.021 41.667 0.00 2.49 43.79 3.27
2645 5272 3.922910 TCACAATCTGCTCTGTTCAGAG 58.077 45.455 21.26 21.26 43.02 3.35
2698 5331 1.021202 TGCTGCACAACCACAGTTAC 58.979 50.000 0.00 0.00 36.26 2.50
2701 5334 2.541588 GCTGCACAACCACAGTTACAAG 60.542 50.000 0.00 0.00 36.26 3.16
2711 5344 4.202010 ACCACAGTTACAAGTGCAACATTC 60.202 41.667 0.00 0.00 41.43 2.67
2805 5441 2.727544 CAAACCCACCAGCAACGG 59.272 61.111 0.00 0.00 0.00 4.44
2846 5482 0.958822 AACCAGAAAACACGGGCATC 59.041 50.000 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.615325 GCTGCAAGTTTTTATGATTGTTGGC 60.615 40.000 0.00 0.00 35.30 4.52
1 2 5.388682 CGCTGCAAGTTTTTATGATTGTTGG 60.389 40.000 0.00 0.00 35.30 3.77
2 3 5.175491 ACGCTGCAAGTTTTTATGATTGTTG 59.825 36.000 0.00 0.00 35.30 3.33
3 4 5.288804 ACGCTGCAAGTTTTTATGATTGTT 58.711 33.333 0.00 0.00 35.30 2.83
4 5 4.870363 ACGCTGCAAGTTTTTATGATTGT 58.130 34.783 0.00 0.00 35.30 2.71
5 6 6.032775 CACTACGCTGCAAGTTTTTATGATTG 59.967 38.462 0.00 0.00 35.30 2.67
6 7 6.086222 CACTACGCTGCAAGTTTTTATGATT 58.914 36.000 0.00 0.00 35.30 2.57
7 8 5.631026 CACTACGCTGCAAGTTTTTATGAT 58.369 37.500 0.00 0.00 35.30 2.45
8 9 4.612712 GCACTACGCTGCAAGTTTTTATGA 60.613 41.667 0.00 0.00 37.11 2.15
9 10 3.603770 GCACTACGCTGCAAGTTTTTATG 59.396 43.478 0.00 0.00 37.11 1.90
10 11 3.252215 TGCACTACGCTGCAAGTTTTTAT 59.748 39.130 0.00 0.00 44.28 1.40
11 12 2.614520 TGCACTACGCTGCAAGTTTTTA 59.385 40.909 0.00 0.00 44.28 1.52
12 13 1.403679 TGCACTACGCTGCAAGTTTTT 59.596 42.857 0.00 0.00 44.28 1.94
13 14 1.021202 TGCACTACGCTGCAAGTTTT 58.979 45.000 0.00 0.00 44.28 2.43
14 15 2.701587 TGCACTACGCTGCAAGTTT 58.298 47.368 0.00 0.00 44.28 2.66
15 16 4.454948 TGCACTACGCTGCAAGTT 57.545 50.000 0.00 0.00 44.28 2.66
20 21 4.228097 CGGCATGCACTACGCTGC 62.228 66.667 21.36 0.00 43.06 5.25
21 22 3.566853 CCGGCATGCACTACGCTG 61.567 66.667 21.36 0.00 43.06 5.18
22 23 3.723235 CTCCGGCATGCACTACGCT 62.723 63.158 21.36 0.00 43.06 5.07
23 24 2.978452 ATCTCCGGCATGCACTACGC 62.978 60.000 21.36 0.00 42.89 4.42
24 25 1.068083 ATCTCCGGCATGCACTACG 59.932 57.895 21.36 13.48 0.00 3.51
25 26 1.502163 GCATCTCCGGCATGCACTAC 61.502 60.000 25.36 0.10 45.19 2.73
26 27 1.227645 GCATCTCCGGCATGCACTA 60.228 57.895 25.36 2.25 45.19 2.74
27 28 2.515523 GCATCTCCGGCATGCACT 60.516 61.111 25.36 0.00 45.19 4.40
30 31 1.947597 TTTTGGCATCTCCGGCATGC 61.948 55.000 23.34 23.34 45.13 4.06
31 32 0.531657 TTTTTGGCATCTCCGGCATG 59.468 50.000 0.00 2.22 41.62 4.06
32 33 0.532115 GTTTTTGGCATCTCCGGCAT 59.468 50.000 0.00 0.00 41.62 4.40
33 34 0.825425 TGTTTTTGGCATCTCCGGCA 60.825 50.000 0.00 0.00 40.11 5.69
34 35 0.316841 TTGTTTTTGGCATCTCCGGC 59.683 50.000 0.00 0.00 37.80 6.13
35 36 1.339610 TGTTGTTTTTGGCATCTCCGG 59.660 47.619 0.00 0.00 37.80 5.14
36 37 2.293122 TCTGTTGTTTTTGGCATCTCCG 59.707 45.455 0.00 0.00 37.80 4.63
37 38 3.319122 AGTCTGTTGTTTTTGGCATCTCC 59.681 43.478 0.00 0.00 0.00 3.71
38 39 4.574599 AGTCTGTTGTTTTTGGCATCTC 57.425 40.909 0.00 0.00 0.00 2.75
39 40 6.655078 AATAGTCTGTTGTTTTTGGCATCT 57.345 33.333 0.00 0.00 0.00 2.90
40 41 8.699749 GTTAAATAGTCTGTTGTTTTTGGCATC 58.300 33.333 0.00 0.00 0.00 3.91
41 42 8.200792 TGTTAAATAGTCTGTTGTTTTTGGCAT 58.799 29.630 0.00 0.00 0.00 4.40
42 43 7.489757 GTGTTAAATAGTCTGTTGTTTTTGGCA 59.510 33.333 0.00 0.00 0.00 4.92
43 44 7.489757 TGTGTTAAATAGTCTGTTGTTTTTGGC 59.510 33.333 0.00 0.00 0.00 4.52
44 45 8.918961 TGTGTTAAATAGTCTGTTGTTTTTGG 57.081 30.769 0.00 0.00 0.00 3.28
46 47 9.528018 CCATGTGTTAAATAGTCTGTTGTTTTT 57.472 29.630 0.00 0.00 0.00 1.94
47 48 7.651704 GCCATGTGTTAAATAGTCTGTTGTTTT 59.348 33.333 0.00 0.00 0.00 2.43
48 49 7.145323 GCCATGTGTTAAATAGTCTGTTGTTT 58.855 34.615 0.00 0.00 0.00 2.83
49 50 6.294508 GGCCATGTGTTAAATAGTCTGTTGTT 60.295 38.462 0.00 0.00 0.00 2.83
50 51 5.183140 GGCCATGTGTTAAATAGTCTGTTGT 59.817 40.000 0.00 0.00 0.00 3.32
51 52 5.640732 GGCCATGTGTTAAATAGTCTGTTG 58.359 41.667 0.00 0.00 0.00 3.33
52 53 4.394920 CGGCCATGTGTTAAATAGTCTGTT 59.605 41.667 2.24 0.00 0.00 3.16
53 54 3.938963 CGGCCATGTGTTAAATAGTCTGT 59.061 43.478 2.24 0.00 0.00 3.41
54 55 4.034048 GTCGGCCATGTGTTAAATAGTCTG 59.966 45.833 2.24 0.00 0.00 3.51
55 56 4.189231 GTCGGCCATGTGTTAAATAGTCT 58.811 43.478 2.24 0.00 0.00 3.24
56 57 3.311596 GGTCGGCCATGTGTTAAATAGTC 59.688 47.826 0.00 0.00 34.09 2.59
57 58 3.275999 GGTCGGCCATGTGTTAAATAGT 58.724 45.455 0.00 0.00 34.09 2.12
58 59 3.275143 TGGTCGGCCATGTGTTAAATAG 58.725 45.455 3.51 0.00 40.46 1.73
59 60 3.351794 TGGTCGGCCATGTGTTAAATA 57.648 42.857 3.51 0.00 40.46 1.40
60 61 2.208132 TGGTCGGCCATGTGTTAAAT 57.792 45.000 3.51 0.00 40.46 1.40
61 62 3.727738 TGGTCGGCCATGTGTTAAA 57.272 47.368 3.51 0.00 40.46 1.52
81 82 9.445878 GGGAAACTTTAGGCTATATTATGGTAC 57.554 37.037 0.00 0.00 0.00 3.34
82 83 9.401496 AGGGAAACTTTAGGCTATATTATGGTA 57.599 33.333 0.00 0.00 0.00 3.25
83 84 8.289182 AGGGAAACTTTAGGCTATATTATGGT 57.711 34.615 0.00 0.00 0.00 3.55
84 85 9.668497 GTAGGGAAACTTTAGGCTATATTATGG 57.332 37.037 0.00 0.00 0.00 2.74
92 93 9.984590 AATTAATTGTAGGGAAACTTTAGGCTA 57.015 29.630 0.00 0.00 0.00 3.93
93 94 8.895141 AATTAATTGTAGGGAAACTTTAGGCT 57.105 30.769 0.00 0.00 0.00 4.58
100 101 9.682465 GGAAGACTAATTAATTGTAGGGAAACT 57.318 33.333 11.05 0.00 0.00 2.66
101 102 9.457436 TGGAAGACTAATTAATTGTAGGGAAAC 57.543 33.333 11.05 0.00 0.00 2.78
103 104 9.627123 CATGGAAGACTAATTAATTGTAGGGAA 57.373 33.333 11.05 0.00 0.00 3.97
104 105 8.778059 ACATGGAAGACTAATTAATTGTAGGGA 58.222 33.333 11.05 0.00 0.00 4.20
105 106 8.980481 ACATGGAAGACTAATTAATTGTAGGG 57.020 34.615 11.05 0.00 0.00 3.53
109 110 8.806146 AGCAAACATGGAAGACTAATTAATTGT 58.194 29.630 11.05 6.92 0.00 2.71
110 111 9.079833 CAGCAAACATGGAAGACTAATTAATTG 57.920 33.333 11.05 3.88 0.00 2.32
111 112 8.253113 CCAGCAAACATGGAAGACTAATTAATT 58.747 33.333 5.89 5.89 40.51 1.40
112 113 7.397192 ACCAGCAAACATGGAAGACTAATTAAT 59.603 33.333 0.00 0.00 40.51 1.40
113 114 6.719370 ACCAGCAAACATGGAAGACTAATTAA 59.281 34.615 0.00 0.00 40.51 1.40
114 115 6.245408 ACCAGCAAACATGGAAGACTAATTA 58.755 36.000 0.00 0.00 40.51 1.40
115 116 5.079643 ACCAGCAAACATGGAAGACTAATT 58.920 37.500 0.00 0.00 40.51 1.40
116 117 4.666512 ACCAGCAAACATGGAAGACTAAT 58.333 39.130 0.00 0.00 40.51 1.73
117 118 4.098914 ACCAGCAAACATGGAAGACTAA 57.901 40.909 0.00 0.00 40.51 2.24
118 119 3.788227 ACCAGCAAACATGGAAGACTA 57.212 42.857 0.00 0.00 40.51 2.59
119 120 2.664402 ACCAGCAAACATGGAAGACT 57.336 45.000 0.00 0.00 40.51 3.24
120 121 4.846779 TTTACCAGCAAACATGGAAGAC 57.153 40.909 0.00 0.00 40.51 3.01
121 122 7.531857 TTTATTTACCAGCAAACATGGAAGA 57.468 32.000 0.00 0.00 40.51 2.87
122 123 8.658609 CATTTTATTTACCAGCAAACATGGAAG 58.341 33.333 0.00 0.00 40.51 3.46
123 124 7.605691 CCATTTTATTTACCAGCAAACATGGAA 59.394 33.333 0.00 0.00 40.51 3.53
124 125 7.038729 TCCATTTTATTTACCAGCAAACATGGA 60.039 33.333 0.00 0.00 40.51 3.41
125 126 7.102346 TCCATTTTATTTACCAGCAAACATGG 58.898 34.615 0.00 0.00 43.87 3.66
126 127 8.034215 TCTCCATTTTATTTACCAGCAAACATG 58.966 33.333 0.00 0.00 0.00 3.21
127 128 8.133024 TCTCCATTTTATTTACCAGCAAACAT 57.867 30.769 0.00 0.00 0.00 2.71
128 129 7.531857 TCTCCATTTTATTTACCAGCAAACA 57.468 32.000 0.00 0.00 0.00 2.83
129 130 8.825667 TTTCTCCATTTTATTTACCAGCAAAC 57.174 30.769 0.00 0.00 0.00 2.93
130 131 9.838339 TTTTTCTCCATTTTATTTACCAGCAAA 57.162 25.926 0.00 0.00 0.00 3.68
132 133 9.651913 GATTTTTCTCCATTTTATTTACCAGCA 57.348 29.630 0.00 0.00 0.00 4.41
133 134 9.098355 GGATTTTTCTCCATTTTATTTACCAGC 57.902 33.333 0.00 0.00 35.24 4.85
139 140 8.197439 CGCCTAGGATTTTTCTCCATTTTATTT 58.803 33.333 14.75 0.00 37.81 1.40
140 141 7.559897 TCGCCTAGGATTTTTCTCCATTTTATT 59.440 33.333 14.75 0.00 37.81 1.40
141 142 7.013369 GTCGCCTAGGATTTTTCTCCATTTTAT 59.987 37.037 14.75 0.00 37.81 1.40
142 143 6.317893 GTCGCCTAGGATTTTTCTCCATTTTA 59.682 38.462 14.75 0.00 37.81 1.52
143 144 5.125578 GTCGCCTAGGATTTTTCTCCATTTT 59.874 40.000 14.75 0.00 37.81 1.82
144 145 4.640647 GTCGCCTAGGATTTTTCTCCATTT 59.359 41.667 14.75 0.00 37.81 2.32
145 146 4.200092 GTCGCCTAGGATTTTTCTCCATT 58.800 43.478 14.75 0.00 37.81 3.16
146 147 3.199946 TGTCGCCTAGGATTTTTCTCCAT 59.800 43.478 14.75 0.00 37.81 3.41
147 148 2.569853 TGTCGCCTAGGATTTTTCTCCA 59.430 45.455 14.75 0.00 37.81 3.86
148 149 3.261981 TGTCGCCTAGGATTTTTCTCC 57.738 47.619 14.75 0.00 35.37 3.71
149 150 7.278868 CCATATATGTCGCCTAGGATTTTTCTC 59.721 40.741 14.75 0.00 0.00 2.87
150 151 7.106239 CCATATATGTCGCCTAGGATTTTTCT 58.894 38.462 14.75 0.00 0.00 2.52
151 152 6.879458 ACCATATATGTCGCCTAGGATTTTTC 59.121 38.462 14.75 0.00 0.00 2.29
152 153 6.779860 ACCATATATGTCGCCTAGGATTTTT 58.220 36.000 14.75 0.00 0.00 1.94
153 154 6.374417 ACCATATATGTCGCCTAGGATTTT 57.626 37.500 14.75 0.00 0.00 1.82
154 155 7.490657 TTACCATATATGTCGCCTAGGATTT 57.509 36.000 14.75 0.00 0.00 2.17
155 156 7.676683 ATTACCATATATGTCGCCTAGGATT 57.323 36.000 14.75 0.00 0.00 3.01
156 157 8.777578 TTATTACCATATATGTCGCCTAGGAT 57.222 34.615 14.75 0.00 0.00 3.24
157 158 8.598202 TTTATTACCATATATGTCGCCTAGGA 57.402 34.615 14.75 0.00 0.00 2.94
158 159 9.832445 AATTTATTACCATATATGTCGCCTAGG 57.168 33.333 11.73 3.67 0.00 3.02
216 217 9.840427 GCTCGGCATAATACAATTATGTTAAAT 57.160 29.630 16.83 0.00 41.05 1.40
217 218 8.293867 GGCTCGGCATAATACAATTATGTTAAA 58.706 33.333 16.83 4.74 41.05 1.52
218 219 7.445707 TGGCTCGGCATAATACAATTATGTTAA 59.554 33.333 16.83 5.99 41.05 2.01
219 220 6.937465 TGGCTCGGCATAATACAATTATGTTA 59.063 34.615 16.83 6.23 41.05 2.41
220 221 5.767665 TGGCTCGGCATAATACAATTATGTT 59.232 36.000 16.83 0.00 41.05 2.71
221 222 5.312895 TGGCTCGGCATAATACAATTATGT 58.687 37.500 16.83 0.00 43.74 2.29
222 223 5.878332 TGGCTCGGCATAATACAATTATG 57.122 39.130 13.05 13.05 35.92 1.90
223 224 5.294306 CGATGGCTCGGCATAATACAATTAT 59.706 40.000 5.91 0.00 41.27 1.28
224 225 4.629634 CGATGGCTCGGCATAATACAATTA 59.370 41.667 5.91 0.00 41.27 1.40
225 226 3.436704 CGATGGCTCGGCATAATACAATT 59.563 43.478 5.91 0.00 41.27 2.32
226 227 3.002791 CGATGGCTCGGCATAATACAAT 58.997 45.455 5.91 0.00 41.27 2.71
227 228 2.036604 TCGATGGCTCGGCATAATACAA 59.963 45.455 5.91 0.00 45.10 2.41
228 229 1.616374 TCGATGGCTCGGCATAATACA 59.384 47.619 5.91 0.00 45.10 2.29
229 230 2.263077 CTCGATGGCTCGGCATAATAC 58.737 52.381 5.91 0.00 45.10 1.89
230 231 1.404181 GCTCGATGGCTCGGCATAATA 60.404 52.381 5.91 0.00 45.10 0.98
231 232 0.671781 GCTCGATGGCTCGGCATAAT 60.672 55.000 5.91 0.00 45.10 1.28
232 233 1.300931 GCTCGATGGCTCGGCATAA 60.301 57.895 5.91 0.00 45.10 1.90
233 234 2.203082 AGCTCGATGGCTCGGCATA 61.203 57.895 5.91 0.00 45.10 3.14
234 235 3.544607 AGCTCGATGGCTCGGCAT 61.545 61.111 5.59 5.59 45.10 4.40
240 241 0.529833 CCGATATGAGCTCGATGGCT 59.470 55.000 9.64 0.00 46.11 4.75
241 242 0.459237 CCCGATATGAGCTCGATGGC 60.459 60.000 9.64 0.00 38.38 4.40
242 243 0.459237 GCCCGATATGAGCTCGATGG 60.459 60.000 9.64 6.37 38.38 3.51
243 244 0.799917 CGCCCGATATGAGCTCGATG 60.800 60.000 9.64 0.00 38.38 3.84
244 245 0.960861 TCGCCCGATATGAGCTCGAT 60.961 55.000 9.64 4.83 38.38 3.59
245 246 1.578206 CTCGCCCGATATGAGCTCGA 61.578 60.000 9.64 0.00 38.38 4.04
246 247 1.154131 CTCGCCCGATATGAGCTCG 60.154 63.158 9.64 0.00 35.92 5.03
247 248 4.878774 CTCGCCCGATATGAGCTC 57.121 61.111 6.82 6.82 0.00 4.09
250 251 1.080230 CTGGCTCGCCCGATATGAG 60.080 63.158 5.33 0.00 35.87 2.90
251 252 0.538746 TACTGGCTCGCCCGATATGA 60.539 55.000 5.33 0.00 35.87 2.15
252 253 0.532573 ATACTGGCTCGCCCGATATG 59.467 55.000 5.33 0.00 35.87 1.78
253 254 1.267121 AATACTGGCTCGCCCGATAT 58.733 50.000 5.33 0.00 35.87 1.63
254 255 1.045407 AAATACTGGCTCGCCCGATA 58.955 50.000 5.33 0.00 35.87 2.92
255 256 0.532862 CAAATACTGGCTCGCCCGAT 60.533 55.000 5.33 0.00 35.87 4.18
256 257 1.153449 CAAATACTGGCTCGCCCGA 60.153 57.895 5.33 0.00 35.87 5.14
257 258 1.153449 TCAAATACTGGCTCGCCCG 60.153 57.895 5.33 1.19 35.87 6.13
258 259 0.107654 AGTCAAATACTGGCTCGCCC 60.108 55.000 5.33 0.00 33.50 6.13
259 260 1.291132 GAGTCAAATACTGGCTCGCC 58.709 55.000 0.00 0.00 46.46 5.54
263 264 5.426504 CTGATCTTGAGTCAAATACTGGCT 58.573 41.667 7.06 0.00 44.95 4.75
264 265 4.034975 GCTGATCTTGAGTCAAATACTGGC 59.965 45.833 7.06 4.20 39.07 4.85
265 266 5.426504 AGCTGATCTTGAGTCAAATACTGG 58.573 41.667 7.06 0.00 39.07 4.00
266 267 5.231779 CGAGCTGATCTTGAGTCAAATACTG 59.768 44.000 7.06 6.28 39.07 2.74
267 268 5.105554 ACGAGCTGATCTTGAGTCAAATACT 60.106 40.000 7.06 0.00 42.80 2.12
268 269 5.105752 ACGAGCTGATCTTGAGTCAAATAC 58.894 41.667 7.06 1.97 0.00 1.89
269 270 5.330455 ACGAGCTGATCTTGAGTCAAATA 57.670 39.130 7.06 0.00 0.00 1.40
270 271 4.199432 ACGAGCTGATCTTGAGTCAAAT 57.801 40.909 7.06 3.89 0.00 2.32
271 272 3.667497 ACGAGCTGATCTTGAGTCAAA 57.333 42.857 7.06 0.00 0.00 2.69
272 273 3.667497 AACGAGCTGATCTTGAGTCAA 57.333 42.857 5.25 5.25 0.00 3.18
273 274 3.256879 AGAAACGAGCTGATCTTGAGTCA 59.743 43.478 0.00 0.00 0.00 3.41
274 275 3.843999 AGAAACGAGCTGATCTTGAGTC 58.156 45.455 0.00 0.00 0.00 3.36
275 276 3.256879 TGAGAAACGAGCTGATCTTGAGT 59.743 43.478 0.00 0.00 0.00 3.41
276 277 3.842820 TGAGAAACGAGCTGATCTTGAG 58.157 45.455 0.00 0.00 0.00 3.02
277 278 3.942130 TGAGAAACGAGCTGATCTTGA 57.058 42.857 0.00 0.00 0.00 3.02
278 279 3.993081 AGTTGAGAAACGAGCTGATCTTG 59.007 43.478 0.00 0.00 0.00 3.02
279 280 3.993081 CAGTTGAGAAACGAGCTGATCTT 59.007 43.478 0.00 0.00 0.00 2.40
280 281 3.256879 TCAGTTGAGAAACGAGCTGATCT 59.743 43.478 0.00 0.00 0.00 2.75
281 282 3.579709 TCAGTTGAGAAACGAGCTGATC 58.420 45.455 0.00 0.00 0.00 2.92
282 283 3.583806 CTCAGTTGAGAAACGAGCTGAT 58.416 45.455 2.97 0.00 44.74 2.90
283 284 2.864097 GCTCAGTTGAGAAACGAGCTGA 60.864 50.000 13.13 0.00 44.74 4.26
284 285 1.458827 GCTCAGTTGAGAAACGAGCTG 59.541 52.381 13.13 0.00 44.74 4.24
285 286 1.342819 AGCTCAGTTGAGAAACGAGCT 59.657 47.619 21.24 21.24 45.41 4.09
286 287 1.789506 AGCTCAGTTGAGAAACGAGC 58.210 50.000 13.13 18.77 44.74 5.03
287 288 5.164233 TCAATAGCTCAGTTGAGAAACGAG 58.836 41.667 13.13 0.00 44.74 4.18
288 289 5.134202 TCAATAGCTCAGTTGAGAAACGA 57.866 39.130 13.13 0.06 44.74 3.85
289 290 5.845985 TTCAATAGCTCAGTTGAGAAACG 57.154 39.130 13.13 0.00 44.74 3.60
290 291 7.074502 CACTTTCAATAGCTCAGTTGAGAAAC 58.925 38.462 13.13 0.00 44.74 2.78
291 292 6.767902 ACACTTTCAATAGCTCAGTTGAGAAA 59.232 34.615 13.13 3.24 44.74 2.52
292 293 6.291377 ACACTTTCAATAGCTCAGTTGAGAA 58.709 36.000 13.13 0.68 44.74 2.87
293 294 5.858381 ACACTTTCAATAGCTCAGTTGAGA 58.142 37.500 13.13 0.00 44.74 3.27
294 295 6.203530 TGAACACTTTCAATAGCTCAGTTGAG 59.796 38.462 4.77 4.77 38.87 3.02
295 296 6.054941 TGAACACTTTCAATAGCTCAGTTGA 58.945 36.000 0.00 0.00 38.87 3.18
296 297 6.304356 TGAACACTTTCAATAGCTCAGTTG 57.696 37.500 0.00 0.00 38.87 3.16
297 298 6.942532 TTGAACACTTTCAATAGCTCAGTT 57.057 33.333 0.00 0.00 45.08 3.16
308 309 4.260985 TGAGCTGAGTTTGAACACTTTCA 58.739 39.130 0.00 0.00 40.14 2.69
309 310 4.882671 TGAGCTGAGTTTGAACACTTTC 57.117 40.909 0.00 0.00 0.00 2.62
310 311 5.841957 AATGAGCTGAGTTTGAACACTTT 57.158 34.783 0.00 0.00 0.00 2.66
311 312 5.841957 AAATGAGCTGAGTTTGAACACTT 57.158 34.783 0.00 0.00 0.00 3.16
312 313 7.516198 AATAAATGAGCTGAGTTTGAACACT 57.484 32.000 0.00 0.00 0.00 3.55
313 314 8.579682 AAAATAAATGAGCTGAGTTTGAACAC 57.420 30.769 0.00 0.00 0.00 3.32
336 337 6.647481 TGGTTCGACTCGAGATTGATTAAAAA 59.353 34.615 21.68 0.00 37.14 1.94
337 338 6.160684 TGGTTCGACTCGAGATTGATTAAAA 58.839 36.000 21.68 0.00 37.14 1.52
338 339 5.716094 TGGTTCGACTCGAGATTGATTAAA 58.284 37.500 21.68 0.00 37.14 1.52
339 340 5.319140 TGGTTCGACTCGAGATTGATTAA 57.681 39.130 21.68 0.45 37.14 1.40
340 341 4.976224 TGGTTCGACTCGAGATTGATTA 57.024 40.909 21.68 0.00 37.14 1.75
341 342 3.868757 TGGTTCGACTCGAGATTGATT 57.131 42.857 21.68 0.00 37.14 2.57
342 343 3.868757 TTGGTTCGACTCGAGATTGAT 57.131 42.857 21.68 0.00 37.14 2.57
343 344 3.653539 TTTGGTTCGACTCGAGATTGA 57.346 42.857 21.68 10.58 37.14 2.57
344 345 4.725556 TTTTTGGTTCGACTCGAGATTG 57.274 40.909 21.68 8.20 37.14 2.67
368 369 2.051703 GCCGCTCGAGATCGACTC 60.052 66.667 18.75 0.00 44.22 3.36
369 370 2.515057 AGCCGCTCGAGATCGACT 60.515 61.111 18.75 5.99 44.22 4.18
370 371 2.051703 GAGCCGCTCGAGATCGAC 60.052 66.667 18.75 3.34 44.22 4.20
372 373 1.728778 CATGAGCCGCTCGAGATCG 60.729 63.158 18.75 11.22 41.45 3.69
373 374 0.387112 CTCATGAGCCGCTCGAGATC 60.387 60.000 18.75 8.44 32.35 2.75
374 375 1.659233 CTCATGAGCCGCTCGAGAT 59.341 57.895 18.75 0.94 32.35 2.75
375 376 3.114650 CTCATGAGCCGCTCGAGA 58.885 61.111 18.75 13.78 32.35 4.04
390 391 4.064266 CTGCAAGAAAAGCTCGAGGCTC 62.064 54.545 15.58 3.87 44.86 4.70
392 393 0.167689 CTGCAAGAAAAGCTCGAGGC 59.832 55.000 15.58 6.83 37.39 4.70
393 394 0.167689 GCTGCAAGAAAAGCTCGAGG 59.832 55.000 15.58 0.00 36.47 4.63
394 395 0.167689 GGCTGCAAGAAAAGCTCGAG 59.832 55.000 8.45 8.45 39.46 4.04
395 396 1.237285 GGGCTGCAAGAAAAGCTCGA 61.237 55.000 0.50 0.00 39.46 4.04
396 397 1.211190 GGGCTGCAAGAAAAGCTCG 59.789 57.895 0.50 0.00 39.46 5.03
397 398 1.742268 CTAGGGCTGCAAGAAAAGCTC 59.258 52.381 0.50 0.00 40.40 4.09
398 399 1.352352 TCTAGGGCTGCAAGAAAAGCT 59.648 47.619 0.50 0.00 39.46 3.74
399 400 1.826385 TCTAGGGCTGCAAGAAAAGC 58.174 50.000 0.50 0.00 38.76 3.51
400 401 3.614092 TCATCTAGGGCTGCAAGAAAAG 58.386 45.455 0.50 0.00 34.07 2.27
401 402 3.719268 TCATCTAGGGCTGCAAGAAAA 57.281 42.857 0.50 0.00 34.07 2.29
402 403 3.614092 CTTCATCTAGGGCTGCAAGAAA 58.386 45.455 0.50 0.00 34.07 2.52
403 404 2.092753 CCTTCATCTAGGGCTGCAAGAA 60.093 50.000 0.50 0.00 34.07 2.52
404 405 1.487976 CCTTCATCTAGGGCTGCAAGA 59.512 52.381 0.50 1.31 34.07 3.02
405 406 1.964552 CCTTCATCTAGGGCTGCAAG 58.035 55.000 0.50 0.00 0.00 4.01
413 414 1.765314 CACCACCTCCCTTCATCTAGG 59.235 57.143 0.00 0.00 35.14 3.02
414 415 1.765314 CCACCACCTCCCTTCATCTAG 59.235 57.143 0.00 0.00 0.00 2.43
415 416 1.080498 ACCACCACCTCCCTTCATCTA 59.920 52.381 0.00 0.00 0.00 1.98
416 417 0.178861 ACCACCACCTCCCTTCATCT 60.179 55.000 0.00 0.00 0.00 2.90
421 422 2.858974 CCCACCACCACCTCCCTT 60.859 66.667 0.00 0.00 0.00 3.95
429 430 2.613696 CCTCCATCCCCACCACCA 60.614 66.667 0.00 0.00 0.00 4.17
483 484 7.618117 GGAAATAACCCTTATCCTTTTCTCCAA 59.382 37.037 0.00 0.00 0.00 3.53
529 541 9.978044 AAAAATCAAGAAGGAAGAAATGAAGAG 57.022 29.630 0.00 0.00 0.00 2.85
671 684 1.207089 AGCAGATGATCGGTTTTCGGA 59.793 47.619 0.00 0.00 39.77 4.55
756 777 6.183361 TGGTGCCTTTAAAAAGTAGGAGTAGT 60.183 38.462 2.03 0.00 34.20 2.73
757 778 6.235664 TGGTGCCTTTAAAAAGTAGGAGTAG 58.764 40.000 2.03 0.00 34.20 2.57
758 779 6.190346 TGGTGCCTTTAAAAAGTAGGAGTA 57.810 37.500 2.03 0.00 34.20 2.59
759 780 5.056553 TGGTGCCTTTAAAAAGTAGGAGT 57.943 39.130 2.03 0.00 34.20 3.85
760 781 5.125578 GGATGGTGCCTTTAAAAAGTAGGAG 59.874 44.000 2.03 0.00 34.20 3.69
762 783 4.770010 TGGATGGTGCCTTTAAAAAGTAGG 59.230 41.667 2.03 0.00 34.20 3.18
763 784 5.476945 ACTGGATGGTGCCTTTAAAAAGTAG 59.523 40.000 2.03 0.00 34.20 2.57
862 898 7.606839 GGCTCTTATTAGGTTCCGCTAATTATT 59.393 37.037 0.00 0.00 0.00 1.40
863 899 7.104290 GGCTCTTATTAGGTTCCGCTAATTAT 58.896 38.462 0.00 0.00 0.00 1.28
864 900 6.461640 GGCTCTTATTAGGTTCCGCTAATTA 58.538 40.000 0.00 0.00 0.00 1.40
885 921 0.034574 TAACAATCCATGTGGCGGCT 60.035 50.000 11.43 0.00 42.99 5.52
918 968 2.614481 CCTTCGATCTTTCGGTTTGGGA 60.614 50.000 0.00 0.00 45.53 4.37
922 972 2.028020 AGCTCCTTCGATCTTTCGGTTT 60.028 45.455 0.00 0.00 45.53 3.27
953 1012 0.179215 CGGCGTGTGAAAATCAGAGC 60.179 55.000 0.00 0.00 0.00 4.09
971 1030 0.453793 AGCTCACTCGATCCAAGTCG 59.546 55.000 0.00 0.00 42.74 4.18
1317 1400 2.047274 ATGGTGGCCGTGACGAAG 60.047 61.111 6.54 0.00 0.00 3.79
1382 1465 0.391597 ACGAGCTTTTTCTGACGGGA 59.608 50.000 0.00 0.00 0.00 5.14
1383 1466 1.194772 GAACGAGCTTTTTCTGACGGG 59.805 52.381 0.00 0.00 0.00 5.28
1389 1472 4.022849 CCATTTGAGGAACGAGCTTTTTCT 60.023 41.667 7.86 0.00 0.00 2.52
1399 1482 2.420022 GGTCACATCCATTTGAGGAACG 59.580 50.000 0.00 0.00 41.92 3.95
1421 1518 6.199719 AGCAGTTTCGTAGTACAACTGTTAAC 59.800 38.462 23.84 13.58 46.17 2.01
1428 1525 5.388164 GCTAACAGCAGTTTCGTAGTACAAC 60.388 44.000 0.00 0.00 41.89 3.32
1586 1687 5.059404 AGGAACAAATTAAACATGCCTCG 57.941 39.130 0.00 0.00 0.00 4.63
1627 1873 4.082354 CCGCATCATACATCAGATCAGAGA 60.082 45.833 0.00 0.00 0.00 3.10
1640 1901 4.330074 GTCCTGCATTATACCGCATCATAC 59.670 45.833 0.00 0.00 37.54 2.39
1645 1906 1.699634 AGGTCCTGCATTATACCGCAT 59.300 47.619 0.00 0.00 37.54 4.73
1649 1910 2.224548 GGGTCAGGTCCTGCATTATACC 60.225 54.545 14.64 14.41 0.00 2.73
1663 1933 2.190578 GCGATTCCCAGGGTCAGG 59.809 66.667 5.01 0.00 0.00 3.86
1708 1978 0.089022 CGTTCATCGTGTCGTCGTTG 59.911 55.000 0.00 0.00 34.52 4.10
1858 2128 2.627515 TATGATCAGCTCCCTGCAAC 57.372 50.000 0.09 0.00 45.94 4.17
1944 2217 2.421424 GCCATCTAACCAACTCAGCTTG 59.579 50.000 0.00 0.00 0.00 4.01
1973 2246 4.843220 ATCAGTGCTTGAAGTTTCCTTG 57.157 40.909 0.00 0.00 39.77 3.61
2115 3999 6.135290 TCGGCCAAAATTGAGATTAATCAG 57.865 37.500 17.56 0.00 0.00 2.90
2121 4005 4.020307 ACCAAATCGGCCAAAATTGAGATT 60.020 37.500 2.24 0.00 39.03 2.40
2214 4627 3.397955 ACAGTACCTCAGGAATTTTGGGT 59.602 43.478 0.00 0.00 0.00 4.51
2268 4698 4.431416 TTTAAGTTGAGCTCACTCCCAA 57.569 40.909 18.03 4.29 42.74 4.12
2338 4768 0.170561 TTACGCTTCTGTCCTCGCTC 59.829 55.000 0.00 0.00 0.00 5.03
2365 4795 2.512692 ACAAGCATGCCTCCATTACA 57.487 45.000 15.66 0.00 0.00 2.41
2366 4796 3.545703 AGTACAAGCATGCCTCCATTAC 58.454 45.455 15.66 7.63 0.00 1.89
2373 4803 1.450312 GGCGAGTACAAGCATGCCT 60.450 57.895 15.66 3.13 39.38 4.75
2410 5028 8.870116 AGCAAGATTTAACCCTAGTTTGATTTT 58.130 29.630 0.00 0.00 37.42 1.82
2413 5031 7.175104 TGAGCAAGATTTAACCCTAGTTTGAT 58.825 34.615 0.00 0.00 37.42 2.57
2416 5034 8.422577 AATTGAGCAAGATTTAACCCTAGTTT 57.577 30.769 0.00 0.00 37.42 2.66
2433 5052 5.668471 TGACCATTTTGTGAAAATTGAGCA 58.332 33.333 0.00 0.00 38.97 4.26
2451 5070 3.274288 GGCAAATTTGGTGTTTTGACCA 58.726 40.909 19.47 0.00 44.64 4.02
2475 5094 7.776969 TCCTAATTAGGTCGAACTAGCTTCTAA 59.223 37.037 27.14 0.00 44.02 2.10
2477 5096 6.127793 TCCTAATTAGGTCGAACTAGCTTCT 58.872 40.000 27.14 0.00 44.02 2.85
2479 5098 6.380560 ACTTCCTAATTAGGTCGAACTAGCTT 59.619 38.462 27.14 10.82 44.02 3.74
2482 5101 5.978322 GCACTTCCTAATTAGGTCGAACTAG 59.022 44.000 27.14 16.46 44.02 2.57
2484 5103 4.222145 TGCACTTCCTAATTAGGTCGAACT 59.778 41.667 27.14 8.66 44.02 3.01
2486 5105 4.811969 TGCACTTCCTAATTAGGTCGAA 57.188 40.909 27.14 15.51 44.02 3.71
2487 5106 4.693283 CATGCACTTCCTAATTAGGTCGA 58.307 43.478 27.14 15.31 44.02 4.20
2488 5107 3.248602 GCATGCACTTCCTAATTAGGTCG 59.751 47.826 27.14 21.06 44.02 4.79
2492 5111 2.874701 AGCGCATGCACTTCCTAATTAG 59.125 45.455 19.57 5.43 46.23 1.73
2520 5139 3.817084 ACATCGAACCATAATCATGCAGG 59.183 43.478 0.00 0.00 0.00 4.85
2644 5271 2.491675 GGAAATGTTTCCGAGTCCCT 57.508 50.000 8.64 0.00 46.36 4.20
2698 5331 3.119602 CCCATCTGAGAATGTTGCACTTG 60.120 47.826 0.00 0.00 0.00 3.16
2701 5334 2.715046 TCCCATCTGAGAATGTTGCAC 58.285 47.619 0.00 0.00 0.00 4.57
2711 5344 3.618351 AGCTTTCATGTTCCCATCTGAG 58.382 45.455 0.00 0.00 0.00 3.35
2805 5441 8.405531 TGGTTTAATATGCTTAGCTGAATTGAC 58.594 33.333 5.60 6.27 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.