Multiple sequence alignment - TraesCS2A01G554700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G554700 chr2A 100.000 2709 0 0 1 2709 759580946 759583654 0.000000e+00 5003.0
1 TraesCS2A01G554700 chr2B 92.770 899 55 4 737 1627 775767517 775768413 0.000000e+00 1291.0
2 TraesCS2A01G554700 chr2B 85.252 773 52 20 862 1615 775771599 775772328 0.000000e+00 739.0
3 TraesCS2A01G554700 chr2B 92.659 504 28 5 1175 1670 775738181 775738683 0.000000e+00 717.0
4 TraesCS2A01G554700 chr2B 91.619 525 33 8 1 522 775766222 775766738 0.000000e+00 715.0
5 TraesCS2A01G554700 chr2B 87.736 424 26 7 733 1132 775737770 775738191 3.160000e-129 472.0
6 TraesCS2A01G554700 chr2B 87.156 218 20 5 116 332 775646043 775646253 9.690000e-60 241.0
7 TraesCS2A01G554700 chr2B 82.721 272 35 7 924 1194 775741936 775742196 5.830000e-57 231.0
8 TraesCS2A01G554700 chr2B 93.431 137 9 0 1295 1431 775742196 775742332 1.270000e-48 204.0
9 TraesCS2A01G554700 chr2B 86.420 162 12 5 588 748 775663463 775663615 4.640000e-38 169.0
10 TraesCS2A01G554700 chr2B 85.802 162 13 7 588 748 775732352 775732504 2.160000e-36 163.0
11 TraesCS2A01G554700 chr2B 96.667 60 2 0 1670 1729 775738974 775739033 1.720000e-17 100.0
12 TraesCS2A01G554700 chr2B 93.333 60 4 0 1670 1729 775768783 775768842 3.720000e-14 89.8
13 TraesCS2A01G554700 chr5A 94.933 750 22 3 1730 2478 691530730 691529996 0.000000e+00 1160.0
14 TraesCS2A01G554700 chr5A 95.417 240 11 0 2470 2709 691530039 691529800 1.520000e-102 383.0
15 TraesCS2A01G554700 chr3A 94.800 750 24 3 1729 2478 547901361 547900627 0.000000e+00 1155.0
16 TraesCS2A01G554700 chr3A 95.417 240 11 0 2470 2709 547900670 547900431 1.520000e-102 383.0
17 TraesCS2A01G554700 chr1A 94.793 749 25 1 1730 2478 169726679 169725945 0.000000e+00 1155.0
18 TraesCS2A01G554700 chr1A 96.250 240 9 0 2470 2709 169725988 169725749 7.030000e-106 394.0
19 TraesCS2A01G554700 chr1A 90.833 240 22 0 2470 2709 257091301 257091540 3.360000e-84 322.0
20 TraesCS2A01G554700 chr7A 91.856 749 47 4 1730 2478 695848188 695847454 0.000000e+00 1033.0
21 TraesCS2A01G554700 chr7A 93.750 240 15 0 2470 2709 695847497 695847258 7.130000e-96 361.0
22 TraesCS2A01G554700 chr7A 88.235 238 28 0 2470 2707 690583381 690583144 4.410000e-73 285.0
23 TraesCS2A01G554700 chr3B 90.405 667 55 8 1813 2474 378148412 378147750 0.000000e+00 869.0
24 TraesCS2A01G554700 chr4A 89.910 664 60 6 1813 2474 698668276 698667618 0.000000e+00 848.0
25 TraesCS2A01G554700 chr4B 89.790 666 61 6 1813 2474 323666017 323665355 0.000000e+00 846.0
26 TraesCS2A01G554700 chr5B 88.589 666 70 6 1813 2475 29429044 29429706 0.000000e+00 804.0
27 TraesCS2A01G554700 chr5B 88.333 240 28 0 2470 2709 262281864 262282103 3.410000e-74 289.0
28 TraesCS2A01G554700 chr5B 84.167 240 38 0 2470 2709 599014569 599014330 1.620000e-57 233.0
29 TraesCS2A01G554700 chr1B 87.278 676 65 20 1815 2474 581312639 581311969 0.000000e+00 752.0
30 TraesCS2A01G554700 chr2D 84.029 407 41 13 119 523 632383005 632382621 1.180000e-98 370.0
31 TraesCS2A01G554700 chr2D 92.353 170 8 3 520 685 632382202 632382034 1.250000e-58 237.0
32 TraesCS2A01G554700 chr2D 91.026 78 6 1 520 597 632657539 632657463 1.330000e-18 104.0
33 TraesCS2A01G554700 chr2D 86.667 75 2 3 899 973 632657016 632656950 2.890000e-10 76.8
34 TraesCS2A01G554700 chrUn 87.156 218 20 5 116 332 178803626 178803836 9.690000e-60 241.0
35 TraesCS2A01G554700 chrUn 85.366 164 10 8 588 748 178822310 178822462 1.000000e-34 158.0
36 TraesCS2A01G554700 chrUn 85.185 162 14 5 588 748 258649943 258650095 1.000000e-34 158.0
37 TraesCS2A01G554700 chr6D 83.750 240 39 0 2470 2709 89034424 89034185 7.550000e-56 228.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G554700 chr2A 759580946 759583654 2708 False 5003.0 5003 100.0000 1 2709 1 chr2A.!!$F1 2708
1 TraesCS2A01G554700 chr2B 775766222 775772328 6106 False 708.7 1291 90.7435 1 1729 4 chr2B.!!$F5 1728
2 TraesCS2A01G554700 chr2B 775737770 775742332 4562 False 344.8 717 90.6428 733 1729 5 chr2B.!!$F4 996
3 TraesCS2A01G554700 chr5A 691529800 691530730 930 True 771.5 1160 95.1750 1730 2709 2 chr5A.!!$R1 979
4 TraesCS2A01G554700 chr3A 547900431 547901361 930 True 769.0 1155 95.1085 1729 2709 2 chr3A.!!$R1 980
5 TraesCS2A01G554700 chr1A 169725749 169726679 930 True 774.5 1155 95.5215 1730 2709 2 chr1A.!!$R1 979
6 TraesCS2A01G554700 chr7A 695847258 695848188 930 True 697.0 1033 92.8030 1730 2709 2 chr7A.!!$R2 979
7 TraesCS2A01G554700 chr3B 378147750 378148412 662 True 869.0 869 90.4050 1813 2474 1 chr3B.!!$R1 661
8 TraesCS2A01G554700 chr4A 698667618 698668276 658 True 848.0 848 89.9100 1813 2474 1 chr4A.!!$R1 661
9 TraesCS2A01G554700 chr4B 323665355 323666017 662 True 846.0 846 89.7900 1813 2474 1 chr4B.!!$R1 661
10 TraesCS2A01G554700 chr5B 29429044 29429706 662 False 804.0 804 88.5890 1813 2475 1 chr5B.!!$F1 662
11 TraesCS2A01G554700 chr1B 581311969 581312639 670 True 752.0 752 87.2780 1815 2474 1 chr1B.!!$R1 659
12 TraesCS2A01G554700 chr2D 632382034 632383005 971 True 303.5 370 88.1910 119 685 2 chr2D.!!$R1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
713 1326 0.472471 AGGAGAAACGACCCTTTGCA 59.528 50.0 0.0 0.0 0.0 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2503 6407 0.034896 TCTTCGTCAAGCTCCAACCC 59.965 55.0 0.0 0.0 0.0 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.157958 CGCCTTGCTTGCTCGCTC 62.158 66.667 0.00 0.00 0.00 5.03
39 40 0.669318 CTTGCTCGCTCGGTTAACCA 60.669 55.000 24.14 10.51 35.14 3.67
46 47 1.604693 CGCTCGGTTAACCAGTTCACT 60.605 52.381 24.14 0.00 35.14 3.41
47 48 2.490991 GCTCGGTTAACCAGTTCACTT 58.509 47.619 24.14 0.00 35.14 3.16
51 53 2.511659 GGTTAACCAGTTCACTTCCCC 58.488 52.381 20.12 0.00 35.64 4.81
52 54 2.107726 GGTTAACCAGTTCACTTCCCCT 59.892 50.000 20.12 0.00 35.64 4.79
80 82 2.037641 AGGTTAACCGGTTCACTACACC 59.962 50.000 26.16 19.36 42.08 4.16
81 83 2.416747 GTTAACCGGTTCACTACACCC 58.583 52.381 26.16 0.00 0.00 4.61
108 110 2.963599 AGGTTAACCGGTTCACCATT 57.036 45.000 38.99 24.38 38.86 3.16
125 127 5.476599 TCACCATTTGACCATTGACTTTAGG 59.523 40.000 0.00 0.00 0.00 2.69
136 138 9.788960 GACCATTGACTTTAGGAAAATATGAAC 57.211 33.333 0.00 0.00 0.00 3.18
193 196 4.981806 TGACTGTTGACCTTTCCAAAAG 57.018 40.909 0.00 0.00 35.51 2.27
194 197 4.340617 TGACTGTTGACCTTTCCAAAAGT 58.659 39.130 0.00 0.00 42.88 2.66
245 248 1.801178 CAAAAAGCTCCCAGTCGTCTC 59.199 52.381 0.00 0.00 0.00 3.36
261 264 1.087501 TCTCCGTCACAGACTCATCG 58.912 55.000 0.00 0.00 0.00 3.84
340 344 2.700773 GGGCATGGCACCGTTTCTC 61.701 63.158 22.06 0.00 0.00 2.87
347 351 2.035442 GCACCGTTTCTCCCTGCTC 61.035 63.158 0.00 0.00 0.00 4.26
354 358 2.427506 GTTTCTCCCTGCTCGTTCATT 58.572 47.619 0.00 0.00 0.00 2.57
435 439 3.580319 GAGGCCACCACAAGGGGT 61.580 66.667 5.01 0.00 43.56 4.95
473 477 3.550992 GTGGGTATGTCGTGCGCG 61.551 66.667 14.79 14.79 39.92 6.86
476 480 2.505337 GGTATGTCGTGCGCGTCA 60.505 61.111 20.91 20.91 40.03 4.35
504 508 5.106277 CCGTAGGCATTCGATCTTGTCTATA 60.106 44.000 0.00 0.00 46.14 1.31
505 509 6.404844 CCGTAGGCATTCGATCTTGTCTATAT 60.405 42.308 0.00 0.00 46.14 0.86
506 510 7.201705 CCGTAGGCATTCGATCTTGTCTATATA 60.202 40.741 0.00 0.00 46.14 0.86
507 511 8.346300 CGTAGGCATTCGATCTTGTCTATATAT 58.654 37.037 7.76 0.00 33.05 0.86
666 1279 2.742774 GCAAATGCAAGGAACGAAAGT 58.257 42.857 0.00 0.00 44.39 2.66
686 1299 2.442272 AGACCTGGATCCGGACGG 60.442 66.667 23.02 14.12 0.00 4.79
691 1304 4.770362 TGGATCCGGACGGCCTGA 62.770 66.667 6.12 4.10 34.68 3.86
692 1305 3.917760 GGATCCGGACGGCCTGAG 61.918 72.222 6.12 0.00 30.49 3.35
693 1306 4.593864 GATCCGGACGGCCTGAGC 62.594 72.222 6.12 2.33 38.76 4.26
713 1326 0.472471 AGGAGAAACGACCCTTTGCA 59.528 50.000 0.00 0.00 0.00 4.08
723 1336 3.029735 CCTTTGCACGCGGTTTGC 61.030 61.111 12.47 12.64 40.63 3.68
765 1378 3.231965 CGTACGTATGACGATTCCATCC 58.768 50.000 9.25 0.00 46.05 3.51
899 1516 4.279043 GCACCGCACCCAACAACC 62.279 66.667 0.00 0.00 0.00 3.77
945 1562 1.001378 CTTGTTCGTTTCTTGCCCAGG 60.001 52.381 0.00 0.00 0.00 4.45
974 1591 5.408299 CCTCCGATCGAGCTCTCATATATAG 59.592 48.000 18.66 0.01 37.27 1.31
975 1592 4.752604 TCCGATCGAGCTCTCATATATAGC 59.247 45.833 18.66 0.00 36.48 2.97
976 1593 4.083537 CCGATCGAGCTCTCATATATAGCC 60.084 50.000 18.66 0.00 36.92 3.93
978 1595 5.559991 CGATCGAGCTCTCATATATAGCCAC 60.560 48.000 10.26 0.00 36.92 5.01
979 1596 3.948473 TCGAGCTCTCATATATAGCCACC 59.052 47.826 12.85 0.00 36.92 4.61
980 1597 3.067461 CGAGCTCTCATATATAGCCACCC 59.933 52.174 12.85 0.00 36.92 4.61
981 1598 3.379452 AGCTCTCATATATAGCCACCCC 58.621 50.000 2.90 0.00 36.92 4.95
1116 1753 2.493030 CGCCTGGTAATCGTCCGT 59.507 61.111 0.00 0.00 0.00 4.69
1199 1836 3.849951 CATCGGCCCCGTAGCTGT 61.850 66.667 6.61 0.00 40.22 4.40
1266 1903 3.386237 GAGCTCCACGTGAGGCCT 61.386 66.667 19.30 3.86 41.73 5.19
1295 1932 4.174762 GTCATGTTCTTCTACGGGAACTC 58.825 47.826 0.00 0.00 41.42 3.01
1375 2012 0.874175 CGATGACTTCGCCGGCATTA 60.874 55.000 28.98 8.34 41.69 1.90
1378 2015 0.176910 TGACTTCGCCGGCATTATCA 59.823 50.000 28.98 20.69 0.00 2.15
1379 2016 0.582005 GACTTCGCCGGCATTATCAC 59.418 55.000 28.98 7.26 0.00 3.06
1475 2112 4.822896 TGTAGCACGGTTTCAAGGTTATTT 59.177 37.500 0.00 0.00 0.00 1.40
1583 2224 5.581605 CAAGTACTTTCACAACATGCTTGT 58.418 37.500 5.07 0.00 37.82 3.16
1671 2838 0.605319 TGAAATGGGCCGTCAGTCAC 60.605 55.000 0.00 0.00 0.00 3.67
1753 2920 2.933573 AGGTACCAGGTCGATCTACTG 58.066 52.381 15.94 0.00 0.00 2.74
1766 2933 4.270566 TCGATCTACTGTTAGCTCTCGTTC 59.729 45.833 0.00 0.00 0.00 3.95
1798 2966 8.338259 CCGAATTCAAATTACAATCGAATCTCT 58.662 33.333 6.22 0.00 0.00 3.10
1799 2967 9.362911 CGAATTCAAATTACAATCGAATCTCTC 57.637 33.333 6.22 0.00 0.00 3.20
1802 2970 9.829507 ATTCAAATTACAATCGAATCTCTCTCT 57.170 29.630 0.00 0.00 0.00 3.10
1803 2971 8.864069 TCAAATTACAATCGAATCTCTCTCTC 57.136 34.615 0.00 0.00 0.00 3.20
1804 2972 8.690884 TCAAATTACAATCGAATCTCTCTCTCT 58.309 33.333 0.00 0.00 0.00 3.10
1805 2973 8.967218 CAAATTACAATCGAATCTCTCTCTCTC 58.033 37.037 0.00 0.00 0.00 3.20
1806 2974 8.463930 AATTACAATCGAATCTCTCTCTCTCT 57.536 34.615 0.00 0.00 0.00 3.10
1807 2975 7.490962 TTACAATCGAATCTCTCTCTCTCTC 57.509 40.000 0.00 0.00 0.00 3.20
1808 2976 5.684704 ACAATCGAATCTCTCTCTCTCTCT 58.315 41.667 0.00 0.00 0.00 3.10
1809 2977 5.760253 ACAATCGAATCTCTCTCTCTCTCTC 59.240 44.000 0.00 0.00 0.00 3.20
1810 2978 5.815233 ATCGAATCTCTCTCTCTCTCTCT 57.185 43.478 0.00 0.00 0.00 3.10
1811 2979 5.201713 TCGAATCTCTCTCTCTCTCTCTC 57.798 47.826 0.00 0.00 0.00 3.20
2162 3402 2.797278 GGTGGCGTCGAGGATGGAT 61.797 63.158 9.75 0.00 0.00 3.41
2376 5917 2.814183 AAGCTCCAGTTCGTACGCGG 62.814 60.000 12.47 8.38 38.89 6.46
2473 6377 2.286536 CCGTTGTTTGAACGTAGGGTTG 60.287 50.000 6.24 0.00 41.64 3.77
2474 6378 2.286536 CGTTGTTTGAACGTAGGGTTGG 60.287 50.000 0.00 0.00 39.50 3.77
2475 6379 2.684374 GTTGTTTGAACGTAGGGTTGGT 59.316 45.455 0.00 0.00 39.50 3.67
2476 6380 2.290464 TGTTTGAACGTAGGGTTGGTG 58.710 47.619 0.00 0.00 39.50 4.17
2479 6383 1.005867 GAACGTAGGGTTGGTGCGA 60.006 57.895 0.00 0.00 39.50 5.10
2480 6384 1.287041 GAACGTAGGGTTGGTGCGAC 61.287 60.000 0.00 0.00 39.50 5.19
2481 6385 2.807895 CGTAGGGTTGGTGCGACG 60.808 66.667 0.00 0.00 0.00 5.12
2482 6386 3.116531 GTAGGGTTGGTGCGACGC 61.117 66.667 14.19 14.19 0.00 5.19
2498 6402 3.641986 GCGCCACCGTCGTTTGAA 61.642 61.111 0.00 0.00 36.67 2.69
2500 6404 2.526993 CGCCACCGTCGTTTGAACA 61.527 57.895 0.00 0.00 0.00 3.18
2501 6405 1.837538 CGCCACCGTCGTTTGAACAT 61.838 55.000 0.00 0.00 0.00 2.71
2502 6406 1.149987 GCCACCGTCGTTTGAACATA 58.850 50.000 0.00 0.00 0.00 2.29
2503 6407 1.127951 GCCACCGTCGTTTGAACATAG 59.872 52.381 0.00 0.00 0.00 2.23
2504 6408 1.730064 CCACCGTCGTTTGAACATAGG 59.270 52.381 0.00 0.00 0.00 2.57
2506 6410 1.345415 ACCGTCGTTTGAACATAGGGT 59.655 47.619 0.00 5.33 31.67 4.34
2507 6411 2.224354 ACCGTCGTTTGAACATAGGGTT 60.224 45.455 0.00 0.00 44.10 4.11
2552 6542 2.257371 CGACGAAGGAGCGGTCAA 59.743 61.111 17.59 0.00 35.12 3.18
2699 7398 0.323725 AGCTTCGATGCCCCAATGTT 60.324 50.000 18.70 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.148768 GGGAAGTGAACTGGTTAACCG 58.851 52.381 19.65 15.87 39.43 4.44
66 68 0.108963 TTTGGGGTGTAGTGAACCGG 59.891 55.000 0.00 0.00 38.70 5.28
90 92 2.885894 TCAAATGGTGAACCGGTTAACC 59.114 45.455 38.03 38.03 43.19 2.85
108 110 9.527157 TCATATTTTCCTAAAGTCAATGGTCAA 57.473 29.630 0.00 0.00 0.00 3.18
163 166 1.502231 GTCAACAGTCATGTCAGCGT 58.498 50.000 0.00 0.00 39.29 5.07
193 196 7.769272 TGGAAATTTTCAAACTCATGAACAC 57.231 32.000 11.09 0.00 38.95 3.32
194 197 7.986320 ACATGGAAATTTTCAAACTCATGAACA 59.014 29.630 21.72 5.87 38.95 3.18
245 248 3.314339 GACGATGAGTCTGTGACGG 57.686 57.895 0.00 0.00 46.13 4.79
340 344 0.251916 TACCCAATGAACGAGCAGGG 59.748 55.000 0.00 0.00 42.07 4.45
347 351 4.378046 CGAAAGTTTCCTACCCAATGAACG 60.378 45.833 10.01 0.00 0.00 3.95
354 358 2.943036 AAGCGAAAGTTTCCTACCCA 57.057 45.000 10.01 0.00 0.00 4.51
377 381 1.269673 CCATGAGGAGACAGAGATGCG 60.270 57.143 0.00 0.00 36.89 4.73
455 459 3.192922 GCGCACGACATACCCACC 61.193 66.667 0.30 0.00 0.00 4.61
603 1212 1.365999 CGTGCACCTGTGTCCTGTA 59.634 57.895 12.15 0.00 0.00 2.74
666 1279 1.381327 GTCCGGATCCAGGTCTCCA 60.381 63.158 7.81 0.00 0.00 3.86
673 1286 4.227134 CAGGCCGTCCGGATCCAG 62.227 72.222 7.81 0.00 37.50 3.86
689 1302 0.832135 AGGGTCGTTTCTCCTGCTCA 60.832 55.000 0.00 0.00 0.00 4.26
691 1304 0.765510 AAAGGGTCGTTTCTCCTGCT 59.234 50.000 0.00 0.00 0.00 4.24
692 1305 0.875059 CAAAGGGTCGTTTCTCCTGC 59.125 55.000 0.00 0.00 0.00 4.85
693 1306 0.875059 GCAAAGGGTCGTTTCTCCTG 59.125 55.000 0.00 0.00 0.00 3.86
698 1311 1.370051 GCGTGCAAAGGGTCGTTTC 60.370 57.895 0.00 0.00 0.00 2.78
723 1336 4.072088 GCTCGTGTTCCCGCAACG 62.072 66.667 0.00 0.00 37.90 4.10
724 1337 4.072088 CGCTCGTGTTCCCGCAAC 62.072 66.667 0.00 0.00 35.28 4.17
730 1343 4.424566 TACGCCCGCTCGTGTTCC 62.425 66.667 9.87 0.00 43.21 3.62
731 1344 3.177249 GTACGCCCGCTCGTGTTC 61.177 66.667 9.87 0.00 43.21 3.18
807 1420 1.593196 TTGGATTCGGATTCGATGGC 58.407 50.000 0.00 0.00 45.51 4.40
956 1573 4.582656 GGTGGCTATATATGAGAGCTCGAT 59.417 45.833 8.37 7.28 42.37 3.59
974 1591 1.402787 CAATGGTTGATAGGGGTGGC 58.597 55.000 0.00 0.00 0.00 5.01
975 1592 1.287739 ACCAATGGTTGATAGGGGTGG 59.712 52.381 0.00 0.00 27.29 4.61
976 1593 2.826674 ACCAATGGTTGATAGGGGTG 57.173 50.000 0.00 0.00 27.29 4.61
1056 1693 2.048127 GCCTCGTCAACGGCTTCT 60.048 61.111 2.31 0.00 42.98 2.85
1065 1702 2.892640 CGGAAGATGGCCTCGTCA 59.107 61.111 3.32 0.00 34.41 4.35
1096 1733 1.153429 GGACGATTACCAGGCGCTT 60.153 57.895 7.64 0.00 0.00 4.68
1183 1820 3.849951 CACAGCTACGGGGCCGAT 61.850 66.667 0.00 0.00 42.83 4.18
1227 1864 2.910688 ACATGACGTTGAAGTCCTGT 57.089 45.000 0.00 2.96 42.38 4.00
1266 1903 2.254546 AGAAGAACATGACGGTGCAA 57.745 45.000 0.00 0.00 0.00 4.08
1318 1955 1.807226 CGATGTCGTCCCTACAGCA 59.193 57.895 0.00 0.00 32.88 4.41
1372 2009 2.171079 CGTGCACCGCCGTGATAAT 61.171 57.895 12.15 0.00 43.14 1.28
1414 2051 3.015677 CTAGCCGAGGACGACGAG 58.984 66.667 0.00 0.00 42.66 4.18
1547 2188 5.698089 TGAAAGTACTTGCTGTGAGATCTTG 59.302 40.000 14.83 0.00 0.00 3.02
1583 2224 3.531934 ATTGCGACTGATCATGACTGA 57.468 42.857 0.00 0.00 35.41 3.41
1753 2920 1.360820 GGCTTGGAACGAGAGCTAAC 58.639 55.000 0.00 0.00 36.66 2.34
1766 2933 4.448537 TGTAATTTGAATTCGGGCTTGG 57.551 40.909 0.04 0.00 0.00 3.61
1798 2966 4.614475 ACAGAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
1799 2967 5.128499 AGAACAGAGAGAGAGAGAGAGAGAG 59.872 48.000 0.00 0.00 0.00 3.20
1800 2968 5.026121 AGAACAGAGAGAGAGAGAGAGAGA 58.974 45.833 0.00 0.00 0.00 3.10
1801 2969 5.350504 AGAACAGAGAGAGAGAGAGAGAG 57.649 47.826 0.00 0.00 0.00 3.20
1802 2970 5.248248 TCAAGAACAGAGAGAGAGAGAGAGA 59.752 44.000 0.00 0.00 0.00 3.10
1803 2971 5.491070 TCAAGAACAGAGAGAGAGAGAGAG 58.509 45.833 0.00 0.00 0.00 3.20
1804 2972 5.491070 CTCAAGAACAGAGAGAGAGAGAGA 58.509 45.833 0.00 0.00 35.09 3.10
1805 2973 4.637534 CCTCAAGAACAGAGAGAGAGAGAG 59.362 50.000 0.00 0.00 35.09 3.20
1806 2974 4.288366 TCCTCAAGAACAGAGAGAGAGAGA 59.712 45.833 0.00 0.00 35.09 3.10
1807 2975 4.588899 TCCTCAAGAACAGAGAGAGAGAG 58.411 47.826 0.00 0.00 35.09 3.20
1808 2976 4.567537 CCTCCTCAAGAACAGAGAGAGAGA 60.568 50.000 0.00 0.00 34.83 3.10
1809 2977 3.696051 CCTCCTCAAGAACAGAGAGAGAG 59.304 52.174 0.00 0.00 34.83 3.20
1810 2978 3.332187 TCCTCCTCAAGAACAGAGAGAGA 59.668 47.826 0.00 0.00 34.83 3.10
1811 2979 3.696045 TCCTCCTCAAGAACAGAGAGAG 58.304 50.000 0.00 0.00 35.09 3.20
2162 3402 2.265739 GTGCGCTGGTCTGATCCA 59.734 61.111 9.73 0.00 36.00 3.41
2376 5917 3.499737 CTGCGTCATCAACCCCGC 61.500 66.667 0.00 0.00 45.92 6.13
2392 5933 4.223923 ACTTCGGACCTTTCAAGATCATCT 59.776 41.667 0.00 0.00 0.00 2.90
2481 6385 3.641986 TTCAAACGACGGTGGCGC 61.642 61.111 0.00 0.00 0.00 6.53
2482 6386 1.837538 ATGTTCAAACGACGGTGGCG 61.838 55.000 0.00 0.00 0.00 5.69
2484 6388 1.730064 CCTATGTTCAAACGACGGTGG 59.270 52.381 0.00 0.00 0.00 4.61
2486 6390 1.345415 ACCCTATGTTCAAACGACGGT 59.655 47.619 0.00 0.00 0.00 4.83
2487 6391 2.088950 ACCCTATGTTCAAACGACGG 57.911 50.000 0.00 0.00 0.00 4.79
2489 6393 3.404899 TCCAACCCTATGTTCAAACGAC 58.595 45.455 0.00 0.00 34.00 4.34
2490 6394 3.670625 CTCCAACCCTATGTTCAAACGA 58.329 45.455 0.00 0.00 34.00 3.85
2492 6396 3.421844 AGCTCCAACCCTATGTTCAAAC 58.578 45.455 0.00 0.00 34.00 2.93
2493 6397 3.806949 AGCTCCAACCCTATGTTCAAA 57.193 42.857 0.00 0.00 34.00 2.69
2494 6398 3.073798 TCAAGCTCCAACCCTATGTTCAA 59.926 43.478 0.00 0.00 34.00 2.69
2495 6399 2.642311 TCAAGCTCCAACCCTATGTTCA 59.358 45.455 0.00 0.00 34.00 3.18
2496 6400 3.010420 GTCAAGCTCCAACCCTATGTTC 58.990 50.000 0.00 0.00 34.00 3.18
2498 6402 1.066143 CGTCAAGCTCCAACCCTATGT 60.066 52.381 0.00 0.00 0.00 2.29
2500 6404 1.568504 TCGTCAAGCTCCAACCCTAT 58.431 50.000 0.00 0.00 0.00 2.57
2501 6405 1.275291 CTTCGTCAAGCTCCAACCCTA 59.725 52.381 0.00 0.00 0.00 3.53
2502 6406 0.035458 CTTCGTCAAGCTCCAACCCT 59.965 55.000 0.00 0.00 0.00 4.34
2503 6407 0.034896 TCTTCGTCAAGCTCCAACCC 59.965 55.000 0.00 0.00 0.00 4.11
2504 6408 1.149148 GTCTTCGTCAAGCTCCAACC 58.851 55.000 0.00 0.00 0.00 3.77
2506 6410 0.671796 TCGTCTTCGTCAAGCTCCAA 59.328 50.000 0.00 0.00 38.33 3.53
2507 6411 0.039437 GTCGTCTTCGTCAAGCTCCA 60.039 55.000 0.00 0.00 38.33 3.86
2552 6542 1.577328 CGGGCTGACAAGAAACGCAT 61.577 55.000 0.00 0.00 0.00 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.