Multiple sequence alignment - TraesCS2A01G553900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G553900 chr2A 100.000 5421 0 0 1 5421 759102627 759097207 0.000000e+00 10011.0
1 TraesCS2A01G553900 chr2A 92.603 1852 95 18 825 2661 760858345 760856521 0.000000e+00 2623.0
2 TraesCS2A01G553900 chr2A 82.267 1376 195 30 1811 3157 760919922 760918567 0.000000e+00 1144.0
3 TraesCS2A01G553900 chr2A 89.530 468 46 3 969 1435 760923349 760922884 1.680000e-164 590.0
4 TraesCS2A01G553900 chr2A 78.640 941 149 23 2271 3164 759032888 759031953 1.310000e-160 577.0
5 TraesCS2A01G553900 chr2A 77.983 813 124 28 3621 4395 760915320 760914525 4.950000e-125 459.0
6 TraesCS2A01G553900 chr2A 93.774 257 15 1 1542 1798 760920160 760919905 8.520000e-103 385.0
7 TraesCS2A01G553900 chr2A 76.020 613 125 18 3954 4553 758756123 758756726 1.140000e-76 298.0
8 TraesCS2A01G553900 chr2A 80.808 297 48 8 962 1255 758714938 758715228 1.960000e-54 224.0
9 TraesCS2A01G553900 chr2A 88.591 149 13 3 410 556 419206978 419206832 1.550000e-40 178.0
10 TraesCS2A01G553900 chr2A 87.838 148 17 1 410 556 703708262 703708409 7.220000e-39 172.0
11 TraesCS2A01G553900 chr2A 89.130 138 14 1 420 556 518315595 518315458 2.600000e-38 171.0
12 TraesCS2A01G553900 chr2A 92.222 90 7 0 86 175 760858496 760858407 1.580000e-25 128.0
13 TraesCS2A01G553900 chr2B 92.917 2753 155 15 1814 4553 772327952 772325227 0.000000e+00 3967.0
14 TraesCS2A01G553900 chr2B 82.920 1692 244 30 1811 3481 772485592 772483925 0.000000e+00 1482.0
15 TraesCS2A01G553900 chr2B 93.759 721 40 5 802 1519 772334376 772333658 0.000000e+00 1077.0
16 TraesCS2A01G553900 chr2B 80.623 1445 237 24 2122 3546 772541348 772539927 0.000000e+00 1077.0
17 TraesCS2A01G553900 chr2B 82.857 910 125 13 3560 4442 772483903 772482998 0.000000e+00 787.0
18 TraesCS2A01G553900 chr2B 88.694 628 51 8 643 1270 772495414 772494807 0.000000e+00 749.0
19 TraesCS2A01G553900 chr2B 77.564 1092 198 39 2099 3157 772353973 772352896 2.770000e-172 616.0
20 TraesCS2A01G553900 chr2B 80.753 717 110 21 3855 4553 772537776 772537070 7.990000e-148 534.0
21 TraesCS2A01G553900 chr2B 80.664 512 87 11 3155 3661 772352862 772352358 2.370000e-103 387.0
22 TraesCS2A01G553900 chr2B 76.322 794 141 26 3155 3940 772229249 772228495 1.100000e-101 381.0
23 TraesCS2A01G553900 chr2B 79.091 550 97 15 2117 2657 772602251 772602791 3.990000e-96 363.0
24 TraesCS2A01G553900 chr2B 92.400 250 17 2 1542 1791 772328783 772328536 6.680000e-94 355.0
25 TraesCS2A01G553900 chr2B 80.561 535 33 23 4558 5038 772325181 772324664 4.020000e-91 346.0
26 TraesCS2A01G553900 chr2B 92.017 238 18 1 9 246 772335465 772335229 3.130000e-87 333.0
27 TraesCS2A01G553900 chr2B 78.555 429 80 7 3953 4372 772790438 772790013 6.920000e-69 272.0
28 TraesCS2A01G553900 chr2B 83.000 300 23 11 4558 4834 772537022 772536728 4.190000e-61 246.0
29 TraesCS2A01G553900 chr2B 79.928 279 45 10 982 1255 771926311 771926583 1.540000e-45 195.0
30 TraesCS2A01G553900 chr2B 85.492 193 18 7 5225 5410 772324678 772324489 5.540000e-45 193.0
31 TraesCS2A01G553900 chr2B 95.062 81 4 0 597 677 772334453 772334373 1.580000e-25 128.0
32 TraesCS2A01G553900 chr2B 100.000 28 0 0 381 408 772498936 772498909 1.000000e-02 52.8
33 TraesCS2A01G553900 chr2D 93.901 951 51 6 564 1512 629460615 629459670 0.000000e+00 1428.0
34 TraesCS2A01G553900 chr2D 83.322 1409 176 27 1810 3164 629452947 629451544 0.000000e+00 1245.0
35 TraesCS2A01G553900 chr2D 91.228 912 25 20 4558 5421 629623139 629622235 0.000000e+00 1190.0
36 TraesCS2A01G553900 chr2D 81.490 1383 225 20 2117 3479 629625571 629624200 0.000000e+00 1107.0
37 TraesCS2A01G553900 chr2D 82.775 1045 118 23 3538 4553 629624196 629623185 0.000000e+00 876.0
38 TraesCS2A01G553900 chr2D 89.367 395 40 2 2268 2661 629583763 629583370 3.770000e-136 496.0
39 TraesCS2A01G553900 chr2D 94.942 257 11 2 1543 1798 629453184 629452929 8.460000e-108 401.0
40 TraesCS2A01G553900 chr2D 83.854 384 56 5 3155 3534 629451421 629451040 1.440000e-95 361.0
41 TraesCS2A01G553900 chr2D 79.254 429 77 6 3953 4372 629849432 629849007 6.870000e-74 289.0
42 TraesCS2A01G553900 chr2D 83.165 297 48 2 3154 3449 629995161 629995456 2.490000e-68 270.0
43 TraesCS2A01G553900 chr2D 82.867 286 44 4 969 1252 629594848 629594566 9.010000e-63 252.0
44 TraesCS2A01G553900 chr2D 78.548 303 44 12 3148 3447 629721625 629721909 4.310000e-41 180.0
45 TraesCS2A01G553900 chr6B 79.012 324 63 3 4060 4382 686544789 686544470 3.290000e-52 217.0
46 TraesCS2A01G553900 chr6B 79.273 275 50 4 978 1247 686553046 686552774 9.270000e-43 185.0
47 TraesCS2A01G553900 chr4B 90.345 145 13 1 410 554 450122677 450122820 7.170000e-44 189.0
48 TraesCS2A01G553900 chr4B 87.755 147 18 0 410 556 650273217 650273363 7.220000e-39 172.0
49 TraesCS2A01G553900 chr4B 84.404 109 17 0 1595 1703 659624382 659624490 2.060000e-19 108.0
50 TraesCS2A01G553900 chr6D 88.435 147 16 1 411 556 409773845 409773991 5.580000e-40 176.0
51 TraesCS2A01G553900 chr3B 88.356 146 16 1 411 556 529407790 529407934 2.010000e-39 174.0
52 TraesCS2A01G553900 chr7D 87.671 146 18 0 411 556 397554916 397555061 2.600000e-38 171.0
53 TraesCS2A01G553900 chr3D 87.671 146 18 0 411 556 449740443 449740298 2.600000e-38 171.0
54 TraesCS2A01G553900 chr1B 88.235 102 11 1 5130 5230 305153265 305153366 2.650000e-23 121.0
55 TraesCS2A01G553900 chr1B 88.732 71 2 2 5062 5131 305152931 305152996 1.250000e-11 82.4
56 TraesCS2A01G553900 chr1B 100.000 28 0 0 5005 5032 456158316 456158343 1.000000e-02 52.8
57 TraesCS2A01G553900 chr7A 85.981 107 14 1 1548 1654 115832585 115832690 4.440000e-21 113.0
58 TraesCS2A01G553900 chr7A 100.000 36 0 0 1672 1707 565795564 565795599 3.500000e-07 67.6
59 TraesCS2A01G553900 chr5B 84.000 75 12 0 1590 1664 485660384 485660458 7.530000e-09 73.1
60 TraesCS2A01G553900 chr5D 96.774 31 1 0 5005 5035 463016150 463016120 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G553900 chr2A 759097207 759102627 5420 True 10011.000000 10011 100.000000 1 5421 1 chr2A.!!$R4 5420
1 TraesCS2A01G553900 chr2A 760856521 760858496 1975 True 1375.500000 2623 92.412500 86 2661 2 chr2A.!!$R5 2575
2 TraesCS2A01G553900 chr2A 760914525 760923349 8824 True 644.500000 1144 85.888500 969 4395 4 chr2A.!!$R6 3426
3 TraesCS2A01G553900 chr2A 759031953 759032888 935 True 577.000000 577 78.640000 2271 3164 1 chr2A.!!$R3 893
4 TraesCS2A01G553900 chr2A 758756123 758756726 603 False 298.000000 298 76.020000 3954 4553 1 chr2A.!!$F3 599
5 TraesCS2A01G553900 chr2B 772324489 772328783 4294 True 1215.250000 3967 87.842500 1542 5410 4 chr2B.!!$R3 3868
6 TraesCS2A01G553900 chr2B 772482998 772485592 2594 True 1134.500000 1482 82.888500 1811 4442 2 chr2B.!!$R6 2631
7 TraesCS2A01G553900 chr2B 772536728 772541348 4620 True 619.000000 1077 81.458667 2122 4834 3 chr2B.!!$R8 2712
8 TraesCS2A01G553900 chr2B 772333658 772335465 1807 True 512.666667 1077 93.612667 9 1519 3 chr2B.!!$R4 1510
9 TraesCS2A01G553900 chr2B 772352358 772353973 1615 True 501.500000 616 79.114000 2099 3661 2 chr2B.!!$R5 1562
10 TraesCS2A01G553900 chr2B 772494807 772498936 4129 True 400.900000 749 94.347000 381 1270 2 chr2B.!!$R7 889
11 TraesCS2A01G553900 chr2B 772228495 772229249 754 True 381.000000 381 76.322000 3155 3940 1 chr2B.!!$R1 785
12 TraesCS2A01G553900 chr2B 772602251 772602791 540 False 363.000000 363 79.091000 2117 2657 1 chr2B.!!$F2 540
13 TraesCS2A01G553900 chr2D 629459670 629460615 945 True 1428.000000 1428 93.901000 564 1512 1 chr2D.!!$R1 948
14 TraesCS2A01G553900 chr2D 629622235 629625571 3336 True 1057.666667 1190 85.164333 2117 5421 3 chr2D.!!$R6 3304
15 TraesCS2A01G553900 chr2D 629451040 629453184 2144 True 669.000000 1245 87.372667 1543 3534 3 chr2D.!!$R5 1991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 4685 0.400975 TAAACTACCAAGCCCGGCAA 59.599 50.0 13.15 0.0 0.00 4.52 F
2087 9199 0.973632 TCGCTGTTAGTGGACCATGT 59.026 50.0 0.00 0.0 0.00 3.21 F
2120 9232 0.506932 CGTCGAGTCGTGCAACAAAT 59.493 50.0 13.12 0.0 35.74 2.32 F
2898 10076 0.681733 AGTGGTGACGAAGCTCATGT 59.318 50.0 0.00 0.0 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 9232 0.249447 CCGCGATGCCATAGTCTTGA 60.249 55.000 8.23 0.00 0.00 3.02 R
3897 15909 0.179137 CTCGAGTGCCTGCAACGATA 60.179 55.000 17.92 3.45 36.81 2.92 R
4138 16195 1.065854 GTAACCATCCTGCAGCTGAGT 60.066 52.381 20.43 5.65 0.00 3.41 R
4620 16729 0.248743 CACTGGCAGGCGCAATATTG 60.249 55.000 20.34 11.27 41.24 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 7.013655 GCTGTCAAATATCCATGAATTGTACCT 59.986 37.037 0.00 0.00 0.00 3.08
103 104 8.630054 TGTACCTAACTTATGACAGCATTTTT 57.370 30.769 0.00 0.00 35.94 1.94
183 184 8.610896 CAGATCGATCAAGCTTTTTAGATCTTT 58.389 33.333 26.47 11.14 40.82 2.52
220 221 5.093457 GTCACAACTGCAAGATCAATCATG 58.907 41.667 0.00 0.00 37.43 3.07
231 232 1.830086 TCAATCATGCGTACGTACCG 58.170 50.000 19.67 15.09 0.00 4.02
255 288 8.188139 CCGACCTTAAATTATGCATAAACAACT 58.812 33.333 22.37 3.48 0.00 3.16
256 289 9.567848 CGACCTTAAATTATGCATAAACAACTT 57.432 29.630 22.37 9.52 0.00 2.66
266 299 5.890334 TGCATAAACAACTTAGCCAATAGC 58.110 37.500 0.00 0.00 44.25 2.97
278 311 3.782889 GCCAATAGCGAGTCCATTTTT 57.217 42.857 0.00 0.00 0.00 1.94
301 334 8.988064 TTTTAAAAGTAACACAGTGCATTTCA 57.012 26.923 0.00 0.00 0.00 2.69
302 335 8.988064 TTTAAAAGTAACACAGTGCATTTCAA 57.012 26.923 0.00 0.00 0.00 2.69
303 336 6.885735 AAAAGTAACACAGTGCATTTCAAC 57.114 33.333 0.00 0.00 0.00 3.18
304 337 5.574891 AAGTAACACAGTGCATTTCAACA 57.425 34.783 0.00 0.00 0.00 3.33
305 338 5.574891 AGTAACACAGTGCATTTCAACAA 57.425 34.783 0.00 0.00 0.00 2.83
306 339 5.960113 AGTAACACAGTGCATTTCAACAAA 58.040 33.333 0.00 0.00 0.00 2.83
307 340 6.572519 AGTAACACAGTGCATTTCAACAAAT 58.427 32.000 0.00 0.00 31.91 2.32
308 341 7.041107 AGTAACACAGTGCATTTCAACAAATT 58.959 30.769 0.00 0.00 28.97 1.82
309 342 5.721876 ACACAGTGCATTTCAACAAATTG 57.278 34.783 0.00 0.00 37.14 2.32
310 343 5.177326 ACACAGTGCATTTCAACAAATTGT 58.823 33.333 0.00 0.00 37.11 2.71
311 344 5.642919 ACACAGTGCATTTCAACAAATTGTT 59.357 32.000 5.41 5.41 42.08 2.83
371 404 6.398918 TCAGTAATACTTCCTGAGAACTTGC 58.601 40.000 0.00 0.00 31.84 4.01
372 405 6.211584 TCAGTAATACTTCCTGAGAACTTGCT 59.788 38.462 0.00 0.00 31.84 3.91
373 406 6.876257 CAGTAATACTTCCTGAGAACTTGCTT 59.124 38.462 0.00 0.00 0.00 3.91
374 407 7.064016 CAGTAATACTTCCTGAGAACTTGCTTC 59.936 40.741 0.00 0.00 0.00 3.86
375 408 3.845781 ACTTCCTGAGAACTTGCTTCA 57.154 42.857 0.00 0.00 0.00 3.02
376 409 3.471680 ACTTCCTGAGAACTTGCTTCAC 58.528 45.455 0.00 0.00 0.00 3.18
377 410 3.118261 ACTTCCTGAGAACTTGCTTCACA 60.118 43.478 0.00 0.00 0.00 3.58
378 411 3.777106 TCCTGAGAACTTGCTTCACAT 57.223 42.857 0.00 0.00 30.13 3.21
379 412 3.405831 TCCTGAGAACTTGCTTCACATG 58.594 45.455 0.00 0.00 30.13 3.21
408 441 8.359642 TGTTAGGAAAGTGGAATTCATTCTTTG 58.640 33.333 19.07 0.00 37.00 2.77
409 442 6.350629 AGGAAAGTGGAATTCATTCTTTGG 57.649 37.500 19.07 0.00 37.00 3.28
412 445 7.039714 AGGAAAGTGGAATTCATTCTTTGGTAC 60.040 37.037 19.07 9.73 37.00 3.34
413 446 7.039714 GGAAAGTGGAATTCATTCTTTGGTACT 60.040 37.037 19.07 2.91 37.00 2.73
414 447 7.454260 AAGTGGAATTCATTCTTTGGTACTC 57.546 36.000 7.93 0.00 37.00 2.59
415 448 6.784031 AGTGGAATTCATTCTTTGGTACTCT 58.216 36.000 7.93 0.00 37.00 3.24
416 449 7.234355 AGTGGAATTCATTCTTTGGTACTCTT 58.766 34.615 7.93 0.00 37.00 2.85
417 450 7.725844 AGTGGAATTCATTCTTTGGTACTCTTT 59.274 33.333 7.93 0.00 37.00 2.52
418 451 8.023706 GTGGAATTCATTCTTTGGTACTCTTTC 58.976 37.037 7.93 0.00 37.00 2.62
419 452 7.176690 TGGAATTCATTCTTTGGTACTCTTTCC 59.823 37.037 7.93 0.00 37.00 3.13
420 453 6.743575 ATTCATTCTTTGGTACTCTTTCCG 57.256 37.500 0.00 0.00 0.00 4.30
421 454 5.223449 TCATTCTTTGGTACTCTTTCCGT 57.777 39.130 0.00 0.00 0.00 4.69
422 455 5.617252 TCATTCTTTGGTACTCTTTCCGTT 58.383 37.500 0.00 0.00 0.00 4.44
423 456 5.699458 TCATTCTTTGGTACTCTTTCCGTTC 59.301 40.000 0.00 0.00 0.00 3.95
429 766 5.750352 TGGTACTCTTTCCGTTCCTAAAT 57.250 39.130 0.00 0.00 0.00 1.40
433 770 8.980596 TGGTACTCTTTCCGTTCCTAAATATAA 58.019 33.333 0.00 0.00 0.00 0.98
852 4685 0.400975 TAAACTACCAAGCCCGGCAA 59.599 50.000 13.15 0.00 0.00 4.52
875 4755 1.214589 GCCAGCCAAATGAGCACTG 59.785 57.895 0.00 0.00 0.00 3.66
1059 4940 1.068741 CGGCGGCTAGAAGTAAGGATT 59.931 52.381 7.61 0.00 0.00 3.01
1081 4962 3.300852 TCAACAAGTATGCCGTCGTTA 57.699 42.857 0.00 0.00 0.00 3.18
1492 6946 2.593725 TCTCCCGTATCGCTCCCG 60.594 66.667 0.00 0.00 0.00 5.14
1611 8120 4.823157 TCCGATTTGTTTGAGTCCGAATA 58.177 39.130 0.00 0.00 0.00 1.75
1907 9010 4.159135 GCTGGCATGGATTTATATTGGGAG 59.841 45.833 0.00 0.00 0.00 4.30
1908 9011 5.573219 CTGGCATGGATTTATATTGGGAGA 58.427 41.667 0.00 0.00 0.00 3.71
1910 9013 5.163001 TGGCATGGATTTATATTGGGAGACA 60.163 40.000 0.00 0.00 0.00 3.41
1913 9016 6.265196 GCATGGATTTATATTGGGAGACACAA 59.735 38.462 0.00 0.00 0.00 3.33
1915 9018 7.206789 TGGATTTATATTGGGAGACACAAGA 57.793 36.000 0.00 0.00 0.00 3.02
1926 9029 9.699410 ATTGGGAGACACAAGATTTTTATCATA 57.301 29.630 0.00 0.00 0.00 2.15
1927 9030 9.527157 TTGGGAGACACAAGATTTTTATCATAA 57.473 29.630 0.00 0.00 0.00 1.90
1928 9031 8.956426 TGGGAGACACAAGATTTTTATCATAAC 58.044 33.333 0.00 0.00 0.00 1.89
1953 9062 8.245491 ACGTTAAATCTTGGTTACAAAAGTGTT 58.755 29.630 0.00 0.00 39.30 3.32
2086 9198 1.645034 CTCGCTGTTAGTGGACCATG 58.355 55.000 0.00 0.00 0.00 3.66
2087 9199 0.973632 TCGCTGTTAGTGGACCATGT 59.026 50.000 0.00 0.00 0.00 3.21
2094 9206 2.884639 GTTAGTGGACCATGTGTTTGCT 59.115 45.455 0.00 0.00 0.00 3.91
2096 9208 3.222173 AGTGGACCATGTGTTTGCTTA 57.778 42.857 0.00 0.00 0.00 3.09
2120 9232 0.506932 CGTCGAGTCGTGCAACAAAT 59.493 50.000 13.12 0.00 35.74 2.32
2197 9309 4.389077 GCTGAACTTATTCTACAACGCAGT 59.611 41.667 0.00 0.00 37.96 4.40
2225 9337 4.752101 GCTCACAGCTTCATATCCGTATTT 59.248 41.667 0.00 0.00 38.45 1.40
2375 9487 3.311966 GTCTGCAACAAGCTGGAATTTC 58.688 45.455 0.00 0.00 45.94 2.17
2474 9586 7.267857 TGCTGATTGATAAGGATATACCATCG 58.732 38.462 0.00 0.00 42.04 3.84
2726 9904 2.592102 TGCCAGGCTTGAGAATTCTT 57.408 45.000 14.15 0.00 0.00 2.52
2756 9934 5.363562 TGGCTCATGATGAAGATAACTGT 57.636 39.130 0.00 0.00 0.00 3.55
2878 10056 1.200948 GGTAGTACACGGGTCACTGAC 59.799 57.143 0.00 0.00 0.00 3.51
2889 10067 2.801859 TCACTGACAGTGGTGACGA 58.198 52.632 30.39 11.43 45.94 4.20
2898 10076 0.681733 AGTGGTGACGAAGCTCATGT 59.318 50.000 0.00 0.00 0.00 3.21
2899 10077 1.071605 GTGGTGACGAAGCTCATGTC 58.928 55.000 6.11 6.11 0.00 3.06
2905 10083 2.802247 TGACGAAGCTCATGTCAACTTG 59.198 45.455 11.80 0.00 39.50 3.16
2918 10096 0.820891 CAACTTGTGCAGGAGCCACT 60.821 55.000 0.00 0.00 41.13 4.00
2964 10142 3.055591 GCAGATGATAGTCATGTGGTCG 58.944 50.000 15.90 0.00 45.17 4.79
2982 10160 1.072505 GGAAACTTGGAGGCCGTCA 59.927 57.895 0.00 0.00 0.00 4.35
3012 10196 4.607293 AAGAGTGACAGCAGTATCACAA 57.393 40.909 7.10 0.00 46.34 3.33
3034 10218 1.168714 CTGCAGGTGGGAGCTTTAAC 58.831 55.000 5.57 0.00 0.00 2.01
3049 10233 7.254692 GGGAGCTTTAACGGTTCTTATACAATC 60.255 40.741 0.00 0.00 0.00 2.67
3054 10238 7.534085 TTAACGGTTCTTATACAATCAGCAG 57.466 36.000 0.00 0.00 0.00 4.24
3076 10260 5.124457 CAGTGCATAATCCAGCAAGTACTTT 59.876 40.000 5.07 0.00 43.20 2.66
3080 10276 5.727791 GCATAATCCAGCAAGTACTTTCACG 60.728 44.000 5.07 0.00 0.00 4.35
3122 10318 2.485426 ACTGCACATCTTCATTTCCACG 59.515 45.455 0.00 0.00 0.00 4.94
3178 10542 7.446001 AAAACAGGATGAAAGAAGCTAAGAG 57.554 36.000 0.00 0.00 39.69 2.85
3190 10554 3.778954 AGCTAAGAGAACTGCAAACCT 57.221 42.857 0.00 0.00 0.00 3.50
3299 10663 4.183865 TCCATCGTCTTACTGAATTGCTG 58.816 43.478 0.00 0.00 0.00 4.41
3353 10717 1.069823 AGTGCAACAGAGACAGTGGAG 59.930 52.381 0.00 0.00 41.43 3.86
3369 10733 6.073981 ACAGTGGAGATAGAGATCAGCATTA 58.926 40.000 0.00 0.00 34.17 1.90
3413 10777 4.857588 GTCATCTTGAAGCATTTGAGCAAG 59.142 41.667 0.00 0.00 37.79 4.01
3546 12763 8.618677 GGGTGCTTTAGTTTATGGTTTATCTAC 58.381 37.037 0.00 0.00 0.00 2.59
3605 12822 7.325660 AGACTTGCATCTTGTTATAACATGG 57.674 36.000 23.78 17.35 38.95 3.66
3614 12831 4.159244 TGTTATAACATGGGCACCTACC 57.841 45.455 14.35 0.00 41.65 3.18
4138 16195 2.169561 TGAGTGCCTGGCGATACATAAA 59.830 45.455 14.98 0.00 0.00 1.40
4149 16206 3.060003 GCGATACATAAACTCAGCTGCAG 60.060 47.826 10.11 10.11 0.00 4.41
4203 16260 1.325640 CATCCAAGTGATCGACAAGCG 59.674 52.381 0.00 0.00 42.69 4.68
4362 16419 8.908786 AATACAGAAGATCTTTTGACACAGAA 57.091 30.769 27.61 8.18 0.00 3.02
4484 16549 7.410300 CCGAAAAATGTATTGAATTCGTGTTGG 60.410 37.037 0.04 0.00 38.29 3.77
4492 16557 2.884012 TGAATTCGTGTTGGATGCTTGT 59.116 40.909 0.04 0.00 0.00 3.16
4526 16593 1.933181 GTTTCCTTTGCCAACTTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
4545 16612 9.075519 ACTTGTGCGAATTTGTAATAATTGATG 57.924 29.630 0.00 0.00 0.00 3.07
4549 16616 7.700234 GTGCGAATTTGTAATAATTGATGGTGA 59.300 33.333 0.00 0.00 0.00 4.02
4550 16617 8.412456 TGCGAATTTGTAATAATTGATGGTGAT 58.588 29.630 0.00 0.00 0.00 3.06
4551 16618 8.693504 GCGAATTTGTAATAATTGATGGTGATG 58.306 33.333 0.00 0.00 0.00 3.07
4552 16619 8.693504 CGAATTTGTAATAATTGATGGTGATGC 58.306 33.333 0.00 0.00 0.00 3.91
4553 16620 9.754382 GAATTTGTAATAATTGATGGTGATGCT 57.246 29.630 0.00 0.00 0.00 3.79
4555 16622 8.929827 TTTGTAATAATTGATGGTGATGCTTG 57.070 30.769 0.00 0.00 0.00 4.01
4584 16693 2.099921 TGCAACCGTTTGTGCATTAAGT 59.900 40.909 0.00 0.00 34.90 2.24
4611 16720 1.562942 TCCATCTTCTGCATCAAGGCT 59.437 47.619 5.86 0.00 34.04 4.58
4612 16721 2.773661 TCCATCTTCTGCATCAAGGCTA 59.226 45.455 5.86 0.00 34.04 3.93
4613 16722 3.393609 TCCATCTTCTGCATCAAGGCTAT 59.606 43.478 5.86 0.00 34.04 2.97
4614 16723 4.594491 TCCATCTTCTGCATCAAGGCTATA 59.406 41.667 5.86 0.00 34.04 1.31
4615 16724 5.250082 TCCATCTTCTGCATCAAGGCTATAT 59.750 40.000 5.86 0.00 34.04 0.86
4616 16725 5.354513 CCATCTTCTGCATCAAGGCTATATG 59.645 44.000 5.86 4.97 34.04 1.78
4617 16726 5.813513 TCTTCTGCATCAAGGCTATATGA 57.186 39.130 11.92 1.76 34.04 2.15
4618 16727 6.178607 TCTTCTGCATCAAGGCTATATGAA 57.821 37.500 11.92 2.08 34.04 2.57
4619 16728 6.776744 TCTTCTGCATCAAGGCTATATGAAT 58.223 36.000 11.92 0.00 34.04 2.57
4620 16729 6.877855 TCTTCTGCATCAAGGCTATATGAATC 59.122 38.462 11.92 0.00 34.04 2.52
4646 16767 2.815647 GCCTGCCAGTGTACGAGC 60.816 66.667 0.00 0.00 0.00 5.03
4657 16778 1.134965 GTGTACGAGCTCAGCTTGGAT 60.135 52.381 18.73 0.30 43.81 3.41
4663 16784 2.178890 GCTCAGCTTGGATCTGCCG 61.179 63.158 0.00 0.00 40.66 5.69
4664 16785 2.124983 TCAGCTTGGATCTGCCGC 60.125 61.111 0.00 0.00 40.66 6.53
4681 16823 1.033746 CGCCTGCAATTCTCACCCAT 61.034 55.000 0.00 0.00 0.00 4.00
4716 16858 8.342634 TCTGTTGAGACTTGCTTAATTTGTTAC 58.657 33.333 0.00 0.00 0.00 2.50
4717 16859 8.220755 TGTTGAGACTTGCTTAATTTGTTACT 57.779 30.769 0.00 0.00 0.00 2.24
4718 16860 8.342634 TGTTGAGACTTGCTTAATTTGTTACTC 58.657 33.333 0.00 0.00 0.00 2.59
4738 16880 9.250624 GTTACTCTACTATCCATTGTTGACATC 57.749 37.037 0.00 0.00 0.00 3.06
4751 16893 5.762179 TGTTGACATCTTAACTGGGAGAT 57.238 39.130 0.00 0.00 33.01 2.75
4757 16899 6.385176 TGACATCTTAACTGGGAGATCTCATT 59.615 38.462 23.85 13.85 30.43 2.57
4961 17117 6.016610 TGGTGTGAGCAGTAAACCTTTTAATC 60.017 38.462 0.00 0.00 0.00 1.75
5053 17229 3.246021 ACTCACCCTACCTTCACCTGTAT 60.246 47.826 0.00 0.00 0.00 2.29
5093 17269 3.119459 TCCTCTGTTTCTAGCTTAGCACG 60.119 47.826 7.07 0.00 0.00 5.34
5216 17392 3.722728 CAGAAACTGCTCTGCCTTTTT 57.277 42.857 0.00 0.00 36.67 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 8.627403 CAATTCATGGATATTTGACAGCTTAGT 58.373 33.333 0.00 0.00 0.00 2.24
74 75 7.843490 TGCTGTCATAAGTTAGGTACAATTC 57.157 36.000 0.00 0.00 0.00 2.17
84 85 8.963130 CGAAAACAAAAATGCTGTCATAAGTTA 58.037 29.630 0.00 0.00 31.46 2.24
92 93 7.617557 ACAATTACGAAAACAAAAATGCTGTC 58.382 30.769 0.00 0.00 0.00 3.51
93 94 7.532682 ACAATTACGAAAACAAAAATGCTGT 57.467 28.000 0.00 0.00 0.00 4.40
147 148 4.916831 GCTTGATCGATCTGAGTAGTCATG 59.083 45.833 25.02 7.53 30.18 3.07
183 184 8.329203 TGCAGTTGTGACATGTACAATTATAA 57.671 30.769 17.83 0.00 39.88 0.98
188 189 4.821260 TCTTGCAGTTGTGACATGTACAAT 59.179 37.500 17.83 0.00 39.88 2.71
196 197 4.136051 TGATTGATCTTGCAGTTGTGACA 58.864 39.130 0.00 0.00 0.00 3.58
255 288 3.838244 AATGGACTCGCTATTGGCTAA 57.162 42.857 0.00 0.00 39.13 3.09
256 289 3.838244 AAATGGACTCGCTATTGGCTA 57.162 42.857 0.00 0.00 39.13 3.93
258 291 3.782889 AAAAATGGACTCGCTATTGGC 57.217 42.857 0.00 0.00 37.64 4.52
276 309 8.988064 TGAAATGCACTGTGTTACTTTTAAAA 57.012 26.923 9.86 0.00 0.00 1.52
277 310 8.865001 GTTGAAATGCACTGTGTTACTTTTAAA 58.135 29.630 9.86 1.41 0.00 1.52
278 311 8.029522 TGTTGAAATGCACTGTGTTACTTTTAA 58.970 29.630 9.86 5.07 0.00 1.52
279 312 7.539436 TGTTGAAATGCACTGTGTTACTTTTA 58.461 30.769 9.86 0.00 0.00 1.52
280 313 6.393990 TGTTGAAATGCACTGTGTTACTTTT 58.606 32.000 9.86 3.97 0.00 2.27
281 314 5.960113 TGTTGAAATGCACTGTGTTACTTT 58.040 33.333 9.86 4.52 0.00 2.66
282 315 5.574891 TGTTGAAATGCACTGTGTTACTT 57.425 34.783 9.86 0.00 0.00 2.24
283 316 5.574891 TTGTTGAAATGCACTGTGTTACT 57.425 34.783 9.86 0.00 0.00 2.24
284 317 6.826893 ATTTGTTGAAATGCACTGTGTTAC 57.173 33.333 9.86 0.00 30.17 2.50
285 318 6.815641 ACAATTTGTTGAAATGCACTGTGTTA 59.184 30.769 9.86 0.00 31.83 2.41
286 319 5.642919 ACAATTTGTTGAAATGCACTGTGTT 59.357 32.000 9.86 0.00 31.83 3.32
287 320 5.177326 ACAATTTGTTGAAATGCACTGTGT 58.823 33.333 9.86 0.00 31.83 3.72
288 321 5.721876 ACAATTTGTTGAAATGCACTGTG 57.278 34.783 2.76 2.76 31.83 3.66
349 382 6.613153 AGCAAGTTCTCAGGAAGTATTACT 57.387 37.500 0.00 0.00 42.84 2.24
350 383 6.874134 TGAAGCAAGTTCTCAGGAAGTATTAC 59.126 38.462 0.00 0.00 34.36 1.89
351 384 6.874134 GTGAAGCAAGTTCTCAGGAAGTATTA 59.126 38.462 0.00 0.00 34.36 0.98
352 385 5.703130 GTGAAGCAAGTTCTCAGGAAGTATT 59.297 40.000 0.00 0.00 34.36 1.89
353 386 5.221722 TGTGAAGCAAGTTCTCAGGAAGTAT 60.222 40.000 0.00 0.00 34.46 2.12
354 387 4.100963 TGTGAAGCAAGTTCTCAGGAAGTA 59.899 41.667 0.00 0.00 34.46 2.24
355 388 3.118261 TGTGAAGCAAGTTCTCAGGAAGT 60.118 43.478 0.00 0.00 34.46 3.01
356 389 3.470709 TGTGAAGCAAGTTCTCAGGAAG 58.529 45.455 0.00 0.00 34.46 3.46
357 390 3.558931 TGTGAAGCAAGTTCTCAGGAA 57.441 42.857 0.00 0.00 34.46 3.36
358 391 3.405831 CATGTGAAGCAAGTTCTCAGGA 58.594 45.455 0.00 0.00 41.00 3.86
359 392 2.486982 CCATGTGAAGCAAGTTCTCAGG 59.513 50.000 0.00 0.00 40.94 3.86
360 393 3.144506 ACCATGTGAAGCAAGTTCTCAG 58.855 45.455 0.00 0.00 40.94 3.35
361 394 3.213206 ACCATGTGAAGCAAGTTCTCA 57.787 42.857 0.00 0.00 41.64 3.27
362 395 3.316308 ACAACCATGTGAAGCAAGTTCTC 59.684 43.478 0.00 0.00 38.69 2.87
363 396 3.290710 ACAACCATGTGAAGCAAGTTCT 58.709 40.909 0.00 0.00 38.69 3.01
364 397 3.715628 ACAACCATGTGAAGCAAGTTC 57.284 42.857 0.00 0.00 38.69 3.01
365 398 4.037923 CCTAACAACCATGTGAAGCAAGTT 59.962 41.667 0.00 0.00 40.46 2.66
366 399 3.569701 CCTAACAACCATGTGAAGCAAGT 59.430 43.478 0.00 0.00 40.46 3.16
367 400 3.820467 TCCTAACAACCATGTGAAGCAAG 59.180 43.478 0.00 0.00 40.46 4.01
368 401 3.826524 TCCTAACAACCATGTGAAGCAA 58.173 40.909 0.00 0.00 40.46 3.91
369 402 3.500448 TCCTAACAACCATGTGAAGCA 57.500 42.857 0.00 0.00 40.46 3.91
370 403 4.278419 ACTTTCCTAACAACCATGTGAAGC 59.722 41.667 0.00 0.00 40.46 3.86
371 404 5.278463 CCACTTTCCTAACAACCATGTGAAG 60.278 44.000 0.00 0.00 40.46 3.02
372 405 4.582656 CCACTTTCCTAACAACCATGTGAA 59.417 41.667 0.00 0.00 40.46 3.18
373 406 4.141287 CCACTTTCCTAACAACCATGTGA 58.859 43.478 0.00 0.00 40.46 3.58
374 407 4.141287 TCCACTTTCCTAACAACCATGTG 58.859 43.478 0.00 0.00 40.46 3.21
375 408 4.447138 TCCACTTTCCTAACAACCATGT 57.553 40.909 0.00 0.00 43.14 3.21
376 409 5.982890 ATTCCACTTTCCTAACAACCATG 57.017 39.130 0.00 0.00 0.00 3.66
377 410 6.074648 TGAATTCCACTTTCCTAACAACCAT 58.925 36.000 2.27 0.00 0.00 3.55
378 411 5.450453 TGAATTCCACTTTCCTAACAACCA 58.550 37.500 2.27 0.00 0.00 3.67
379 412 6.590234 ATGAATTCCACTTTCCTAACAACC 57.410 37.500 2.27 0.00 0.00 3.77
408 441 9.473640 CTTATATTTAGGAACGGAAAGAGTACC 57.526 37.037 0.00 0.00 0.00 3.34
412 445 9.819267 AAGACTTATATTTAGGAACGGAAAGAG 57.181 33.333 0.00 0.00 0.00 2.85
542 952 8.524487 TGGCATACCAACGAAATATAAGTTTTT 58.476 29.630 0.00 0.00 45.37 1.94
559 969 1.683385 CGATCAGAGACTGGCATACCA 59.317 52.381 0.00 0.00 46.51 3.25
560 970 1.957177 TCGATCAGAGACTGGCATACC 59.043 52.381 0.00 0.00 31.51 2.73
561 971 3.505680 AGATCGATCAGAGACTGGCATAC 59.494 47.826 26.47 0.00 31.51 2.39
562 972 3.505293 CAGATCGATCAGAGACTGGCATA 59.495 47.826 26.47 0.00 35.27 3.14
644 1092 4.467084 GTCTTGCCCGGCCGATCA 62.467 66.667 30.73 20.94 0.00 2.92
746 4579 3.133183 GGAGGCAACCAAAAGGTTTTACA 59.867 43.478 0.00 0.00 37.17 2.41
767 4600 2.014093 GAAATCGCGAGCTCACGTGG 62.014 60.000 22.35 7.71 42.78 4.94
852 4685 1.099879 GCTCATTTGGCTGGCTCGAT 61.100 55.000 2.00 0.00 0.00 3.59
875 4755 2.289506 ACTAGTTTCTCCTCCGTTTGCC 60.290 50.000 0.00 0.00 0.00 4.52
1026 4907 3.816524 CGCCGTCGAAGCTCCTCT 61.817 66.667 7.07 0.00 38.10 3.69
1059 4940 3.513680 ACGACGGCATACTTGTTGATA 57.486 42.857 0.00 0.00 0.00 2.15
1926 9029 8.245491 ACACTTTTGTAACCAAGATTTAACGTT 58.755 29.630 5.88 5.88 32.60 3.99
1927 9030 7.764331 ACACTTTTGTAACCAAGATTTAACGT 58.236 30.769 0.00 0.00 32.60 3.99
1928 9031 8.528295 CAACACTTTTGTAACCAAGATTTAACG 58.472 33.333 0.00 0.00 33.55 3.18
1953 9062 3.207778 GCAACTGGTTAAGTACACACCA 58.792 45.455 9.70 9.70 38.56 4.17
2086 9198 1.193650 TCGACGCATGTAAGCAAACAC 59.806 47.619 0.00 0.00 30.75 3.32
2087 9199 1.459209 CTCGACGCATGTAAGCAAACA 59.541 47.619 0.00 0.00 0.00 2.83
2094 9206 1.068832 GCACGACTCGACGCATGTAA 61.069 55.000 5.20 0.00 36.70 2.41
2096 9208 2.805353 GCACGACTCGACGCATGT 60.805 61.111 5.20 0.00 36.70 3.21
2101 9213 0.506932 ATTTGTTGCACGACTCGACG 59.493 50.000 5.20 0.00 39.31 5.12
2120 9232 0.249447 CCGCGATGCCATAGTCTTGA 60.249 55.000 8.23 0.00 0.00 3.02
2197 9309 4.194640 GGATATGAAGCTGTGAGCAGAAA 58.805 43.478 0.00 0.00 45.56 2.52
2225 9337 2.751436 GCTTGAGCCGGCATCCAA 60.751 61.111 31.54 25.57 34.31 3.53
2726 9904 2.190538 TCATCATGAGCCAGGTTCTCA 58.809 47.619 4.73 2.02 43.79 3.27
2756 9934 4.262036 CCCTTGCTGTTGTATATCGCTCTA 60.262 45.833 0.00 0.00 0.00 2.43
2878 10056 1.073964 CATGAGCTTCGTCACCACTG 58.926 55.000 0.00 0.00 0.00 3.66
2889 10067 2.292569 CTGCACAAGTTGACATGAGCTT 59.707 45.455 10.54 0.00 33.52 3.74
2898 10076 0.819259 GTGGCTCCTGCACAAGTTGA 60.819 55.000 10.54 0.00 41.91 3.18
2899 10077 0.820891 AGTGGCTCCTGCACAAGTTG 60.821 55.000 0.00 0.00 41.91 3.16
2918 10096 1.746615 GCCTCGCATCTCTTTGCCA 60.747 57.895 0.00 0.00 39.52 4.92
2964 10142 0.322546 ATGACGGCCTCCAAGTTTCC 60.323 55.000 0.00 0.00 0.00 3.13
2982 10160 6.398234 ACTGCTGTCACTCTTAATATCGAT 57.602 37.500 2.16 2.16 0.00 3.59
3034 10218 4.260375 GCACTGCTGATTGTATAAGAACCG 60.260 45.833 0.00 0.00 0.00 4.44
3049 10233 1.385528 TGCTGGATTATGCACTGCTG 58.614 50.000 1.98 0.00 33.94 4.41
3054 10238 5.123820 TGAAAGTACTTGCTGGATTATGCAC 59.876 40.000 14.83 0.00 39.05 4.57
3076 10260 5.626116 GCCCTCTTAATAAGTCTTTCCGTGA 60.626 44.000 0.00 0.00 0.00 4.35
3080 10276 5.586643 CAGTGCCCTCTTAATAAGTCTTTCC 59.413 44.000 0.00 0.00 0.00 3.13
3122 10318 4.714632 TCAAATAATCTCCCGTCCAATCC 58.285 43.478 0.00 0.00 0.00 3.01
3211 10575 4.265073 ACTGGACAGTATTTCCAATGCTC 58.735 43.478 2.58 0.00 42.76 4.26
3299 10663 5.118990 TCAGTGCTCTTAATATTGCAGTCC 58.881 41.667 0.00 0.00 37.02 3.85
3369 10733 3.258225 CTGCGCTAATACGACAGCT 57.742 52.632 9.73 0.00 35.57 4.24
3413 10777 2.538512 AGGTTGGTTCCTTGTCGTAC 57.461 50.000 0.00 0.00 33.52 3.67
3605 12822 7.971183 TTTTTCATTAAATTTGGTAGGTGCC 57.029 32.000 0.00 0.00 0.00 5.01
3896 15908 0.457853 TCGAGTGCCTGCAACGATAC 60.458 55.000 15.11 0.00 34.27 2.24
3897 15909 0.179137 CTCGAGTGCCTGCAACGATA 60.179 55.000 17.92 3.45 36.81 2.92
4138 16195 1.065854 GTAACCATCCTGCAGCTGAGT 60.066 52.381 20.43 5.65 0.00 3.41
4149 16206 4.333926 GCTTCATGAGTTCTGTAACCATCC 59.666 45.833 0.00 0.00 36.15 3.51
4203 16260 7.197071 TCCAATAATGTGCCAACGATATTAC 57.803 36.000 0.00 0.00 0.00 1.89
4276 16333 4.084537 CCGTAGCGGTCATAATGATTGAAC 60.085 45.833 0.00 0.00 42.73 3.18
4277 16334 4.055360 CCGTAGCGGTCATAATGATTGAA 58.945 43.478 0.00 0.00 42.73 2.69
4464 16524 6.035843 GCATCCAACACGAATTCAATACATT 58.964 36.000 6.22 0.00 0.00 2.71
4484 16549 4.567959 ACAAAAGCAGAAACAACAAGCATC 59.432 37.500 0.00 0.00 0.00 3.91
4492 16557 5.106752 GCAAAGGAAACAAAAGCAGAAACAA 60.107 36.000 0.00 0.00 0.00 2.83
4526 16593 8.693504 GCATCACCATCAATTATTACAAATTCG 58.306 33.333 0.00 0.00 0.00 3.34
4545 16612 2.813754 TGCAGTTCTTACAAGCATCACC 59.186 45.455 0.00 0.00 34.16 4.02
4549 16616 2.226437 CGGTTGCAGTTCTTACAAGCAT 59.774 45.455 0.00 0.00 40.80 3.79
4550 16617 1.601903 CGGTTGCAGTTCTTACAAGCA 59.398 47.619 0.00 0.00 40.80 3.91
4551 16618 1.602377 ACGGTTGCAGTTCTTACAAGC 59.398 47.619 0.00 0.00 38.19 4.01
4552 16619 3.963383 AACGGTTGCAGTTCTTACAAG 57.037 42.857 0.00 0.00 0.00 3.16
4553 16620 3.440872 ACAAACGGTTGCAGTTCTTACAA 59.559 39.130 14.43 0.00 38.39 2.41
4554 16621 3.011119 ACAAACGGTTGCAGTTCTTACA 58.989 40.909 14.43 0.00 38.39 2.41
4555 16622 3.359654 CACAAACGGTTGCAGTTCTTAC 58.640 45.455 14.43 0.00 38.39 2.34
4584 16693 4.602107 TGATGCAGAAGATGGATTGGAAA 58.398 39.130 0.00 0.00 40.55 3.13
4611 16720 5.066375 GGCAGGCGCAATATTGATTCATATA 59.934 40.000 19.73 0.00 41.24 0.86
4612 16721 4.142315 GGCAGGCGCAATATTGATTCATAT 60.142 41.667 19.73 0.00 41.24 1.78
4613 16722 3.191162 GGCAGGCGCAATATTGATTCATA 59.809 43.478 19.73 0.00 41.24 2.15
4614 16723 2.029649 GGCAGGCGCAATATTGATTCAT 60.030 45.455 19.73 1.86 41.24 2.57
4615 16724 1.337703 GGCAGGCGCAATATTGATTCA 59.662 47.619 19.73 0.00 41.24 2.57
4616 16725 1.337703 TGGCAGGCGCAATATTGATTC 59.662 47.619 19.73 6.90 41.24 2.52
4617 16726 1.338973 CTGGCAGGCGCAATATTGATT 59.661 47.619 19.73 0.00 41.24 2.57
4618 16727 0.956633 CTGGCAGGCGCAATATTGAT 59.043 50.000 19.73 0.00 41.24 2.57
4619 16728 0.394216 ACTGGCAGGCGCAATATTGA 60.394 50.000 19.73 0.00 41.24 2.57
4620 16729 0.248743 CACTGGCAGGCGCAATATTG 60.249 55.000 20.34 11.27 41.24 1.90
4646 16767 2.178890 GCGGCAGATCCAAGCTGAG 61.179 63.158 13.60 3.26 39.47 3.35
4663 16784 0.458669 CATGGGTGAGAATTGCAGGC 59.541 55.000 0.00 0.00 0.00 4.85
4664 16785 1.843368 ACATGGGTGAGAATTGCAGG 58.157 50.000 0.00 0.00 0.00 4.85
4681 16823 1.486310 AGTCTCAACAGAAGTGGCACA 59.514 47.619 21.41 0.00 0.00 4.57
4717 16859 9.817809 GTTAAGATGTCAACAATGGATAGTAGA 57.182 33.333 0.00 0.00 0.00 2.59
4718 16860 9.823647 AGTTAAGATGTCAACAATGGATAGTAG 57.176 33.333 0.00 0.00 0.00 2.57
4728 16870 5.560722 TCTCCCAGTTAAGATGTCAACAA 57.439 39.130 0.00 0.00 0.00 2.83
4738 16880 5.055812 GCAGAATGAGATCTCCCAGTTAAG 58.944 45.833 20.03 4.08 39.69 1.85
4751 16893 2.793288 TCAGCATTGGCAGAATGAGA 57.207 45.000 10.96 5.80 44.61 3.27
4757 16899 1.272037 TGACCATTCAGCATTGGCAGA 60.272 47.619 0.00 0.00 44.61 4.26
4925 17081 2.203139 CACACCACAGGGCGAACA 60.203 61.111 0.00 0.00 37.90 3.18
4926 17082 1.961277 CTCACACCACAGGGCGAAC 60.961 63.158 0.00 0.00 37.90 3.95
4929 17085 4.624364 TGCTCACACCACAGGGCG 62.624 66.667 0.00 0.00 37.90 6.13
4930 17086 2.111999 TACTGCTCACACCACAGGGC 62.112 60.000 0.00 0.00 37.90 5.19
5053 17229 4.985583 AGAGGAGTAGAAGGAGATAAGGGA 59.014 45.833 0.00 0.00 0.00 4.20
5216 17392 6.834168 AGGAGAGTGACTTGTTTTTGAAAA 57.166 33.333 0.00 0.00 0.00 2.29
5217 17393 7.228706 GGATAGGAGAGTGACTTGTTTTTGAAA 59.771 37.037 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.