Multiple sequence alignment - TraesCS2A01G553800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G553800 chr2A 100.000 2978 0 0 1 2978 759033227 759036204 0.000000e+00 5500
1 TraesCS2A01G553800 chr2A 96.850 2286 53 2 712 2978 735407173 735409458 0.000000e+00 3805
2 TraesCS2A01G553800 chr2A 96.197 1709 45 3 1289 2978 716472121 716470414 0.000000e+00 2778
3 TraesCS2A01G553800 chr2A 98.261 575 10 0 718 1292 716476985 716476411 0.000000e+00 1007
4 TraesCS2A01G553800 chr2A 96.441 281 10 0 439 719 716477346 716477066 5.810000e-127 464
5 TraesCS2A01G553800 chr2A 95.819 287 9 3 434 719 735406814 735407098 7.520000e-126 460
6 TraesCS2A01G553800 chr2B 96.809 2288 46 3 718 2978 9119811 9117524 0.000000e+00 3795
7 TraesCS2A01G553800 chr2B 95.423 284 13 0 436 719 9120175 9119892 1.260000e-123 453
8 TraesCS2A01G553800 chr3B 96.402 2279 57 4 718 2978 771430160 771427889 0.000000e+00 3731
9 TraesCS2A01G553800 chr3B 93.993 283 13 2 437 719 771430518 771430240 2.740000e-115 425
10 TraesCS2A01G553800 chr1A 90.854 2296 168 14 721 2978 489163730 489161439 0.000000e+00 3038
11 TraesCS2A01G553800 chr1A 88.129 278 29 4 437 713 24356271 24356545 7.960000e-86 327
12 TraesCS2A01G553800 chr1A 88.129 278 29 4 437 713 24380722 24380996 7.960000e-86 327
13 TraesCS2A01G553800 chr1A 86.364 286 31 6 437 719 489164125 489163845 3.730000e-79 305
14 TraesCS2A01G553800 chr4D 90.846 2294 170 12 721 2978 399431432 399429143 0.000000e+00 3037
15 TraesCS2A01G553800 chr4D 87.324 284 30 5 437 719 399431818 399431540 1.330000e-83 320
16 TraesCS2A01G553800 chr6A 90.628 2294 173 13 721 2978 587882986 587880699 0.000000e+00 3007
17 TraesCS2A01G553800 chr6A 86.364 286 31 6 437 719 587883381 587883101 3.730000e-79 305
18 TraesCS2A01G553800 chr7A 90.235 2294 175 13 721 2978 56102374 56104654 0.000000e+00 2950
19 TraesCS2A01G553800 chr5B 90.179 2291 187 19 721 2978 594224099 594221814 0.000000e+00 2950
20 TraesCS2A01G553800 chr6B 91.219 2141 157 10 868 2978 711728633 711730772 0.000000e+00 2883


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G553800 chr2A 759033227 759036204 2977 False 5500.0 5500 100.0000 1 2978 1 chr2A.!!$F1 2977
1 TraesCS2A01G553800 chr2A 716470414 716472121 1707 True 2778.0 2778 96.1970 1289 2978 1 chr2A.!!$R1 1689
2 TraesCS2A01G553800 chr2A 735406814 735409458 2644 False 2132.5 3805 96.3345 434 2978 2 chr2A.!!$F2 2544
3 TraesCS2A01G553800 chr2A 716476411 716477346 935 True 735.5 1007 97.3510 439 1292 2 chr2A.!!$R2 853
4 TraesCS2A01G553800 chr2B 9117524 9120175 2651 True 2124.0 3795 96.1160 436 2978 2 chr2B.!!$R1 2542
5 TraesCS2A01G553800 chr3B 771427889 771430518 2629 True 2078.0 3731 95.1975 437 2978 2 chr3B.!!$R1 2541
6 TraesCS2A01G553800 chr1A 489161439 489164125 2686 True 1671.5 3038 88.6090 437 2978 2 chr1A.!!$R1 2541
7 TraesCS2A01G553800 chr4D 399429143 399431818 2675 True 1678.5 3037 89.0850 437 2978 2 chr4D.!!$R1 2541
8 TraesCS2A01G553800 chr6A 587880699 587883381 2682 True 1656.0 3007 88.4960 437 2978 2 chr6A.!!$R1 2541
9 TraesCS2A01G553800 chr7A 56102374 56104654 2280 False 2950.0 2950 90.2350 721 2978 1 chr7A.!!$F1 2257
10 TraesCS2A01G553800 chr5B 594221814 594224099 2285 True 2950.0 2950 90.1790 721 2978 1 chr5B.!!$R1 2257
11 TraesCS2A01G553800 chr6B 711728633 711730772 2139 False 2883.0 2883 91.2190 868 2978 1 chr6B.!!$F1 2110

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.035630 GAATCAGAGCCAGCACCACT 60.036 55.0 0.00 0.00 0.00 4.00 F
42 43 0.035630 AATCAGAGCCAGCACCACTC 60.036 55.0 0.00 0.00 0.00 3.51 F
352 353 0.035915 GAAGGCCTGGTCTTCTCACC 60.036 60.0 29.11 7.32 40.64 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1141 1359 0.976641 TAGTTGCCAGGACCTGACAG 59.023 55.000 23.77 7.47 32.44 3.51 R
1931 2160 1.422024 TGGTGTGGTTAGCTTGCCTTA 59.578 47.619 0.00 0.00 0.00 2.69 R
2378 2616 2.169352 AGCAGAGCACGTAGGATCAAAT 59.831 45.455 0.00 0.00 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.314923 AGAATCAAACCAATCCACGAATG 57.685 39.130 0.00 0.00 0.00 2.67
23 24 5.009631 AGAATCAAACCAATCCACGAATGA 58.990 37.500 0.00 0.00 0.00 2.57
24 25 5.476599 AGAATCAAACCAATCCACGAATGAA 59.523 36.000 0.00 0.00 0.00 2.57
25 26 5.920193 ATCAAACCAATCCACGAATGAAT 57.080 34.783 0.00 0.00 0.00 2.57
26 27 5.309323 TCAAACCAATCCACGAATGAATC 57.691 39.130 0.00 0.00 0.00 2.52
27 28 4.764308 TCAAACCAATCCACGAATGAATCA 59.236 37.500 0.00 0.00 0.00 2.57
28 29 4.970662 AACCAATCCACGAATGAATCAG 57.029 40.909 0.00 0.00 0.00 2.90
29 30 4.220693 ACCAATCCACGAATGAATCAGA 57.779 40.909 0.00 0.00 0.00 3.27
30 31 4.194640 ACCAATCCACGAATGAATCAGAG 58.805 43.478 0.00 0.00 0.00 3.35
31 32 3.003068 CCAATCCACGAATGAATCAGAGC 59.997 47.826 0.00 0.00 0.00 4.09
32 33 2.315925 TCCACGAATGAATCAGAGCC 57.684 50.000 0.00 0.00 0.00 4.70
33 34 1.554617 TCCACGAATGAATCAGAGCCA 59.445 47.619 0.00 0.00 0.00 4.75
34 35 1.938577 CCACGAATGAATCAGAGCCAG 59.061 52.381 0.00 0.00 0.00 4.85
35 36 1.329906 CACGAATGAATCAGAGCCAGC 59.670 52.381 0.00 0.00 0.00 4.85
36 37 1.065926 ACGAATGAATCAGAGCCAGCA 60.066 47.619 0.00 0.00 0.00 4.41
37 38 1.329906 CGAATGAATCAGAGCCAGCAC 59.670 52.381 0.00 0.00 0.00 4.40
38 39 1.674962 GAATGAATCAGAGCCAGCACC 59.325 52.381 0.00 0.00 0.00 5.01
39 40 0.622136 ATGAATCAGAGCCAGCACCA 59.378 50.000 0.00 0.00 0.00 4.17
40 41 0.321919 TGAATCAGAGCCAGCACCAC 60.322 55.000 0.00 0.00 0.00 4.16
41 42 0.035630 GAATCAGAGCCAGCACCACT 60.036 55.000 0.00 0.00 0.00 4.00
42 43 0.035630 AATCAGAGCCAGCACCACTC 60.036 55.000 0.00 0.00 0.00 3.51
43 44 1.908340 ATCAGAGCCAGCACCACTCC 61.908 60.000 0.00 0.00 0.00 3.85
44 45 2.527624 AGAGCCAGCACCACTCCA 60.528 61.111 0.00 0.00 0.00 3.86
45 46 2.359230 GAGCCAGCACCACTCCAC 60.359 66.667 0.00 0.00 0.00 4.02
46 47 4.320456 AGCCAGCACCACTCCACG 62.320 66.667 0.00 0.00 0.00 4.94
49 50 4.969196 CAGCACCACTCCACGCGT 62.969 66.667 5.58 5.58 0.00 6.01
50 51 4.664677 AGCACCACTCCACGCGTC 62.665 66.667 9.86 0.00 0.00 5.19
52 53 4.337060 CACCACTCCACGCGTCGA 62.337 66.667 9.86 7.86 0.00 4.20
53 54 3.598715 ACCACTCCACGCGTCGAA 61.599 61.111 9.86 0.00 0.00 3.71
54 55 2.126071 CCACTCCACGCGTCGAAT 60.126 61.111 9.86 0.00 0.00 3.34
55 56 1.138036 CCACTCCACGCGTCGAATA 59.862 57.895 9.86 0.00 0.00 1.75
56 57 1.138047 CCACTCCACGCGTCGAATAC 61.138 60.000 9.86 0.00 0.00 1.89
57 58 1.138047 CACTCCACGCGTCGAATACC 61.138 60.000 9.86 0.00 0.00 2.73
58 59 1.588139 CTCCACGCGTCGAATACCC 60.588 63.158 9.86 0.00 0.00 3.69
59 60 2.001361 CTCCACGCGTCGAATACCCT 62.001 60.000 9.86 0.00 0.00 4.34
60 61 1.876714 CCACGCGTCGAATACCCTG 60.877 63.158 9.86 0.00 0.00 4.45
61 62 2.202703 ACGCGTCGAATACCCTGC 60.203 61.111 5.58 0.00 0.00 4.85
62 63 3.320078 CGCGTCGAATACCCTGCG 61.320 66.667 0.00 0.00 39.57 5.18
63 64 2.202703 GCGTCGAATACCCTGCGT 60.203 61.111 0.00 0.00 0.00 5.24
64 65 1.808390 GCGTCGAATACCCTGCGTT 60.808 57.895 0.00 0.00 0.00 4.84
65 66 1.995991 CGTCGAATACCCTGCGTTG 59.004 57.895 0.00 0.00 0.00 4.10
66 67 0.734942 CGTCGAATACCCTGCGTTGT 60.735 55.000 0.00 0.00 0.00 3.32
67 68 1.435577 GTCGAATACCCTGCGTTGTT 58.564 50.000 0.00 0.00 0.00 2.83
68 69 1.802365 GTCGAATACCCTGCGTTGTTT 59.198 47.619 0.00 0.00 0.00 2.83
69 70 2.070783 TCGAATACCCTGCGTTGTTTC 58.929 47.619 0.00 0.00 0.00 2.78
70 71 1.801771 CGAATACCCTGCGTTGTTTCA 59.198 47.619 0.00 0.00 0.00 2.69
71 72 2.224549 CGAATACCCTGCGTTGTTTCAA 59.775 45.455 0.00 0.00 0.00 2.69
72 73 3.119990 CGAATACCCTGCGTTGTTTCAAT 60.120 43.478 0.00 0.00 0.00 2.57
73 74 4.614993 CGAATACCCTGCGTTGTTTCAATT 60.615 41.667 0.00 0.00 0.00 2.32
74 75 5.391097 CGAATACCCTGCGTTGTTTCAATTA 60.391 40.000 0.00 0.00 0.00 1.40
75 76 3.915437 ACCCTGCGTTGTTTCAATTAG 57.085 42.857 0.00 0.00 0.00 1.73
76 77 3.482436 ACCCTGCGTTGTTTCAATTAGA 58.518 40.909 0.00 0.00 0.00 2.10
77 78 3.502211 ACCCTGCGTTGTTTCAATTAGAG 59.498 43.478 0.00 0.00 0.00 2.43
78 79 3.502211 CCCTGCGTTGTTTCAATTAGAGT 59.498 43.478 0.00 0.00 0.00 3.24
79 80 4.693566 CCCTGCGTTGTTTCAATTAGAGTA 59.306 41.667 0.00 0.00 0.00 2.59
80 81 5.163854 CCCTGCGTTGTTTCAATTAGAGTAG 60.164 44.000 0.00 0.00 0.00 2.57
81 82 5.163854 CCTGCGTTGTTTCAATTAGAGTAGG 60.164 44.000 0.00 0.00 0.00 3.18
82 83 5.543714 TGCGTTGTTTCAATTAGAGTAGGA 58.456 37.500 0.00 0.00 0.00 2.94
83 84 6.170506 TGCGTTGTTTCAATTAGAGTAGGAT 58.829 36.000 0.00 0.00 0.00 3.24
84 85 7.324935 TGCGTTGTTTCAATTAGAGTAGGATA 58.675 34.615 0.00 0.00 0.00 2.59
85 86 7.985184 TGCGTTGTTTCAATTAGAGTAGGATAT 59.015 33.333 0.00 0.00 0.00 1.63
86 87 8.276325 GCGTTGTTTCAATTAGAGTAGGATATG 58.724 37.037 0.00 0.00 0.00 1.78
87 88 9.529325 CGTTGTTTCAATTAGAGTAGGATATGA 57.471 33.333 0.00 0.00 0.00 2.15
98 99 9.931698 TTAGAGTAGGATATGAGTTTAACAGGA 57.068 33.333 0.00 0.00 0.00 3.86
99 100 8.840200 AGAGTAGGATATGAGTTTAACAGGAA 57.160 34.615 0.00 0.00 0.00 3.36
100 101 9.268282 AGAGTAGGATATGAGTTTAACAGGAAA 57.732 33.333 0.00 0.00 0.00 3.13
101 102 9.886132 GAGTAGGATATGAGTTTAACAGGAAAA 57.114 33.333 0.00 0.00 0.00 2.29
129 130 7.713764 AGATGTTAAACAAAAAGAACATGGC 57.286 32.000 3.96 0.00 41.40 4.40
130 131 7.500141 AGATGTTAAACAAAAAGAACATGGCT 58.500 30.769 3.96 0.00 41.40 4.75
131 132 8.637986 AGATGTTAAACAAAAAGAACATGGCTA 58.362 29.630 3.96 0.00 41.40 3.93
132 133 7.995463 TGTTAAACAAAAAGAACATGGCTAC 57.005 32.000 0.00 0.00 0.00 3.58
133 134 7.548097 TGTTAAACAAAAAGAACATGGCTACA 58.452 30.769 0.00 0.00 0.00 2.74
134 135 8.200792 TGTTAAACAAAAAGAACATGGCTACAT 58.799 29.630 0.00 0.00 37.99 2.29
135 136 9.040939 GTTAAACAAAAAGAACATGGCTACATT 57.959 29.630 0.00 0.00 34.35 2.71
136 137 9.606631 TTAAACAAAAAGAACATGGCTACATTT 57.393 25.926 0.00 0.00 34.35 2.32
137 138 7.481275 AACAAAAAGAACATGGCTACATTTG 57.519 32.000 0.00 9.12 34.35 2.32
138 139 5.990996 ACAAAAAGAACATGGCTACATTTGG 59.009 36.000 17.59 7.12 34.35 3.28
139 140 6.183360 ACAAAAAGAACATGGCTACATTTGGA 60.183 34.615 17.59 0.00 34.35 3.53
140 141 5.649782 AAAGAACATGGCTACATTTGGAG 57.350 39.130 0.00 0.00 34.35 3.86
141 142 3.019564 AGAACATGGCTACATTTGGAGC 58.980 45.455 6.21 6.21 34.35 4.70
142 143 2.814805 ACATGGCTACATTTGGAGCT 57.185 45.000 14.20 0.00 38.79 4.09
143 144 2.648059 ACATGGCTACATTTGGAGCTC 58.352 47.619 14.20 4.71 38.79 4.09
144 145 1.952296 CATGGCTACATTTGGAGCTCC 59.048 52.381 26.78 26.78 38.79 4.70
145 146 0.107703 TGGCTACATTTGGAGCTCCG 60.108 55.000 27.43 15.55 38.79 4.63
146 147 0.815615 GGCTACATTTGGAGCTCCGG 60.816 60.000 27.43 18.28 38.79 5.14
147 148 0.107654 GCTACATTTGGAGCTCCGGT 60.108 55.000 27.43 22.53 39.43 5.28
148 149 1.656652 CTACATTTGGAGCTCCGGTG 58.343 55.000 27.43 24.77 39.43 4.94
149 150 0.251916 TACATTTGGAGCTCCGGTGG 59.748 55.000 27.43 18.62 39.43 4.61
150 151 1.299648 CATTTGGAGCTCCGGTGGA 59.700 57.895 27.43 6.98 39.43 4.02
151 152 0.107017 CATTTGGAGCTCCGGTGGAT 60.107 55.000 27.43 13.26 39.43 3.41
152 153 0.625849 ATTTGGAGCTCCGGTGGATT 59.374 50.000 27.43 5.38 39.43 3.01
153 154 1.281419 TTTGGAGCTCCGGTGGATTA 58.719 50.000 27.43 4.53 39.43 1.75
154 155 1.507140 TTGGAGCTCCGGTGGATTAT 58.493 50.000 27.43 0.00 39.43 1.28
155 156 0.758734 TGGAGCTCCGGTGGATTATG 59.241 55.000 27.43 0.00 39.43 1.90
156 157 1.048601 GGAGCTCCGGTGGATTATGA 58.951 55.000 19.06 0.00 0.00 2.15
157 158 1.625818 GGAGCTCCGGTGGATTATGAT 59.374 52.381 19.06 0.00 0.00 2.45
158 159 2.832129 GGAGCTCCGGTGGATTATGATA 59.168 50.000 19.06 0.00 0.00 2.15
159 160 3.260884 GGAGCTCCGGTGGATTATGATAA 59.739 47.826 19.06 0.00 0.00 1.75
160 161 4.080863 GGAGCTCCGGTGGATTATGATAAT 60.081 45.833 19.06 0.00 0.00 1.28
161 162 5.491982 GAGCTCCGGTGGATTATGATAATT 58.508 41.667 0.87 0.00 0.00 1.40
162 163 5.491982 AGCTCCGGTGGATTATGATAATTC 58.508 41.667 0.00 0.00 0.00 2.17
163 164 4.636206 GCTCCGGTGGATTATGATAATTCC 59.364 45.833 0.00 4.42 0.00 3.01
164 165 5.803145 GCTCCGGTGGATTATGATAATTCCA 60.803 44.000 0.00 10.37 0.00 3.53
165 166 6.387192 TCCGGTGGATTATGATAATTCCAT 57.613 37.500 14.84 0.00 0.00 3.41
166 167 6.179756 TCCGGTGGATTATGATAATTCCATG 58.820 40.000 14.84 11.83 0.00 3.66
167 168 5.945784 CCGGTGGATTATGATAATTCCATGT 59.054 40.000 14.84 0.00 0.00 3.21
168 169 6.434028 CCGGTGGATTATGATAATTCCATGTT 59.566 38.462 14.84 0.00 0.00 2.71
169 170 7.362056 CCGGTGGATTATGATAATTCCATGTTC 60.362 40.741 14.84 6.57 0.00 3.18
170 171 7.362056 CGGTGGATTATGATAATTCCATGTTCC 60.362 40.741 14.84 11.64 32.05 3.62
171 172 7.093771 GGTGGATTATGATAATTCCATGTTCCC 60.094 40.741 14.84 9.86 31.18 3.97
172 173 7.451255 GTGGATTATGATAATTCCATGTTCCCA 59.549 37.037 14.84 6.18 31.18 4.37
173 174 8.009513 TGGATTATGATAATTCCATGTTCCCAA 58.990 33.333 10.37 0.96 31.18 4.12
174 175 8.306761 GGATTATGATAATTCCATGTTCCCAAC 58.693 37.037 0.00 0.00 0.00 3.77
175 176 7.595819 TTATGATAATTCCATGTTCCCAACC 57.404 36.000 0.00 0.00 0.00 3.77
176 177 4.285863 TGATAATTCCATGTTCCCAACCC 58.714 43.478 0.00 0.00 0.00 4.11
177 178 1.555967 AATTCCATGTTCCCAACCCG 58.444 50.000 0.00 0.00 0.00 5.28
178 179 0.970427 ATTCCATGTTCCCAACCCGC 60.970 55.000 0.00 0.00 0.00 6.13
179 180 2.035626 CCATGTTCCCAACCCGCT 59.964 61.111 0.00 0.00 0.00 5.52
180 181 1.606313 CCATGTTCCCAACCCGCTT 60.606 57.895 0.00 0.00 0.00 4.68
181 182 1.184970 CCATGTTCCCAACCCGCTTT 61.185 55.000 0.00 0.00 0.00 3.51
182 183 0.678950 CATGTTCCCAACCCGCTTTT 59.321 50.000 0.00 0.00 0.00 2.27
183 184 0.678950 ATGTTCCCAACCCGCTTTTG 59.321 50.000 0.00 0.00 0.00 2.44
184 185 0.395862 TGTTCCCAACCCGCTTTTGA 60.396 50.000 0.00 0.00 0.00 2.69
185 186 0.747852 GTTCCCAACCCGCTTTTGAA 59.252 50.000 0.00 0.00 0.00 2.69
186 187 1.343142 GTTCCCAACCCGCTTTTGAAT 59.657 47.619 0.00 0.00 0.00 2.57
187 188 1.253100 TCCCAACCCGCTTTTGAATC 58.747 50.000 0.00 0.00 0.00 2.52
188 189 0.965439 CCCAACCCGCTTTTGAATCA 59.035 50.000 0.00 0.00 0.00 2.57
189 190 1.067635 CCCAACCCGCTTTTGAATCAG 60.068 52.381 0.00 0.00 0.00 2.90
190 191 1.613437 CCAACCCGCTTTTGAATCAGT 59.387 47.619 0.00 0.00 0.00 3.41
191 192 2.817258 CCAACCCGCTTTTGAATCAGTA 59.183 45.455 0.00 0.00 0.00 2.74
192 193 3.254657 CCAACCCGCTTTTGAATCAGTAA 59.745 43.478 0.00 0.00 0.00 2.24
193 194 4.226761 CAACCCGCTTTTGAATCAGTAAC 58.773 43.478 0.00 0.00 0.00 2.50
194 195 3.482436 ACCCGCTTTTGAATCAGTAACA 58.518 40.909 0.00 0.00 0.00 2.41
195 196 3.886505 ACCCGCTTTTGAATCAGTAACAA 59.113 39.130 0.00 0.00 0.00 2.83
196 197 4.522789 ACCCGCTTTTGAATCAGTAACAAT 59.477 37.500 0.00 0.00 0.00 2.71
197 198 5.708230 ACCCGCTTTTGAATCAGTAACAATA 59.292 36.000 0.00 0.00 0.00 1.90
198 199 6.027749 CCCGCTTTTGAATCAGTAACAATAC 58.972 40.000 0.00 0.00 0.00 1.89
199 200 6.128007 CCCGCTTTTGAATCAGTAACAATACT 60.128 38.462 0.00 0.00 43.22 2.12
200 201 7.065324 CCCGCTTTTGAATCAGTAACAATACTA 59.935 37.037 0.00 0.00 40.44 1.82
201 202 8.447833 CCGCTTTTGAATCAGTAACAATACTAA 58.552 33.333 0.00 0.00 40.44 2.24
202 203 9.820229 CGCTTTTGAATCAGTAACAATACTAAA 57.180 29.630 0.00 0.00 40.44 1.85
206 207 8.801882 TTGAATCAGTAACAATACTAAAGGGG 57.198 34.615 0.00 0.00 40.44 4.79
207 208 7.343357 TGAATCAGTAACAATACTAAAGGGGG 58.657 38.462 0.00 0.00 40.44 5.40
208 209 7.183112 TGAATCAGTAACAATACTAAAGGGGGA 59.817 37.037 0.00 0.00 40.44 4.81
209 210 6.956102 TCAGTAACAATACTAAAGGGGGAA 57.044 37.500 0.00 0.00 40.44 3.97
210 211 6.954232 TCAGTAACAATACTAAAGGGGGAAG 58.046 40.000 0.00 0.00 40.44 3.46
211 212 6.731919 TCAGTAACAATACTAAAGGGGGAAGA 59.268 38.462 0.00 0.00 40.44 2.87
212 213 7.048512 CAGTAACAATACTAAAGGGGGAAGAG 58.951 42.308 0.00 0.00 40.44 2.85
213 214 6.734281 AGTAACAATACTAAAGGGGGAAGAGT 59.266 38.462 0.00 0.00 40.62 3.24
214 215 6.464530 AACAATACTAAAGGGGGAAGAGTT 57.535 37.500 0.00 0.00 0.00 3.01
215 216 6.464530 ACAATACTAAAGGGGGAAGAGTTT 57.535 37.500 0.00 0.00 0.00 2.66
216 217 6.246163 ACAATACTAAAGGGGGAAGAGTTTG 58.754 40.000 0.00 0.00 0.00 2.93
217 218 3.808834 ACTAAAGGGGGAAGAGTTTGG 57.191 47.619 0.00 0.00 0.00 3.28
218 219 3.061369 ACTAAAGGGGGAAGAGTTTGGT 58.939 45.455 0.00 0.00 0.00 3.67
219 220 3.465966 ACTAAAGGGGGAAGAGTTTGGTT 59.534 43.478 0.00 0.00 0.00 3.67
220 221 3.414759 AAAGGGGGAAGAGTTTGGTTT 57.585 42.857 0.00 0.00 0.00 3.27
221 222 3.414759 AAGGGGGAAGAGTTTGGTTTT 57.585 42.857 0.00 0.00 0.00 2.43
222 223 3.414759 AGGGGGAAGAGTTTGGTTTTT 57.585 42.857 0.00 0.00 0.00 1.94
261 262 9.817809 TTACTGCCTATACTGAGAATTTACTTG 57.182 33.333 0.00 0.00 0.00 3.16
262 263 8.079211 ACTGCCTATACTGAGAATTTACTTGA 57.921 34.615 0.00 0.00 0.00 3.02
263 264 8.200792 ACTGCCTATACTGAGAATTTACTTGAG 58.799 37.037 0.00 0.00 0.00 3.02
264 265 7.500992 TGCCTATACTGAGAATTTACTTGAGG 58.499 38.462 0.00 0.00 0.00 3.86
265 266 7.125811 TGCCTATACTGAGAATTTACTTGAGGT 59.874 37.037 0.00 0.00 0.00 3.85
266 267 7.988028 GCCTATACTGAGAATTTACTTGAGGTT 59.012 37.037 0.00 0.00 0.00 3.50
267 268 9.319143 CCTATACTGAGAATTTACTTGAGGTTG 57.681 37.037 0.00 0.00 0.00 3.77
268 269 9.877178 CTATACTGAGAATTTACTTGAGGTTGT 57.123 33.333 0.00 0.00 0.00 3.32
269 270 6.867662 ACTGAGAATTTACTTGAGGTTGTG 57.132 37.500 0.00 0.00 0.00 3.33
270 271 6.357367 ACTGAGAATTTACTTGAGGTTGTGT 58.643 36.000 0.00 0.00 0.00 3.72
271 272 7.506114 ACTGAGAATTTACTTGAGGTTGTGTA 58.494 34.615 0.00 0.00 0.00 2.90
272 273 7.657761 ACTGAGAATTTACTTGAGGTTGTGTAG 59.342 37.037 0.00 0.00 0.00 2.74
273 274 6.934645 TGAGAATTTACTTGAGGTTGTGTAGG 59.065 38.462 0.00 0.00 0.00 3.18
274 275 6.838382 AGAATTTACTTGAGGTTGTGTAGGT 58.162 36.000 0.00 0.00 0.00 3.08
275 276 7.287810 AGAATTTACTTGAGGTTGTGTAGGTT 58.712 34.615 0.00 0.00 0.00 3.50
276 277 6.877611 ATTTACTTGAGGTTGTGTAGGTTG 57.122 37.500 0.00 0.00 0.00 3.77
277 278 3.208747 ACTTGAGGTTGTGTAGGTTGG 57.791 47.619 0.00 0.00 0.00 3.77
278 279 2.508300 ACTTGAGGTTGTGTAGGTTGGT 59.492 45.455 0.00 0.00 0.00 3.67
279 280 3.053917 ACTTGAGGTTGTGTAGGTTGGTT 60.054 43.478 0.00 0.00 0.00 3.67
280 281 3.655615 TGAGGTTGTGTAGGTTGGTTT 57.344 42.857 0.00 0.00 0.00 3.27
281 282 3.283751 TGAGGTTGTGTAGGTTGGTTTG 58.716 45.455 0.00 0.00 0.00 2.93
282 283 3.054287 TGAGGTTGTGTAGGTTGGTTTGA 60.054 43.478 0.00 0.00 0.00 2.69
283 284 3.284617 AGGTTGTGTAGGTTGGTTTGAC 58.715 45.455 0.00 0.00 0.00 3.18
284 285 2.359848 GGTTGTGTAGGTTGGTTTGACC 59.640 50.000 0.00 0.00 39.22 4.02
299 300 7.921786 TGGTTTGACCACTAGAAATATCTTG 57.078 36.000 0.00 0.00 44.79 3.02
300 301 7.685481 TGGTTTGACCACTAGAAATATCTTGA 58.315 34.615 0.00 0.00 44.79 3.02
301 302 7.606456 TGGTTTGACCACTAGAAATATCTTGAC 59.394 37.037 0.00 0.00 44.79 3.18
302 303 7.065923 GGTTTGACCACTAGAAATATCTTGACC 59.934 40.741 0.00 0.00 38.42 4.02
303 304 7.496346 TTGACCACTAGAAATATCTTGACCT 57.504 36.000 0.00 0.00 37.10 3.85
304 305 6.878317 TGACCACTAGAAATATCTTGACCTG 58.122 40.000 0.00 0.00 37.10 4.00
305 306 6.667848 TGACCACTAGAAATATCTTGACCTGA 59.332 38.462 0.00 0.00 37.10 3.86
306 307 7.180229 TGACCACTAGAAATATCTTGACCTGAA 59.820 37.037 0.00 0.00 37.10 3.02
307 308 7.560368 ACCACTAGAAATATCTTGACCTGAAG 58.440 38.462 0.00 0.00 37.10 3.02
308 309 7.181125 ACCACTAGAAATATCTTGACCTGAAGT 59.819 37.037 0.00 0.00 37.10 3.01
309 310 8.696374 CCACTAGAAATATCTTGACCTGAAGTA 58.304 37.037 0.00 0.00 37.10 2.24
310 311 9.522804 CACTAGAAATATCTTGACCTGAAGTAC 57.477 37.037 0.00 0.00 37.10 2.73
311 312 8.407064 ACTAGAAATATCTTGACCTGAAGTACG 58.593 37.037 0.00 0.00 37.10 3.67
312 313 7.171630 AGAAATATCTTGACCTGAAGTACGT 57.828 36.000 0.00 0.00 29.15 3.57
313 314 7.612677 AGAAATATCTTGACCTGAAGTACGTT 58.387 34.615 0.00 0.00 29.15 3.99
314 315 8.746530 AGAAATATCTTGACCTGAAGTACGTTA 58.253 33.333 0.00 0.00 29.15 3.18
315 316 8.928270 AAATATCTTGACCTGAAGTACGTTAG 57.072 34.615 0.00 0.00 0.00 2.34
316 317 5.979288 ATCTTGACCTGAAGTACGTTAGT 57.021 39.130 0.00 0.00 0.00 2.24
317 318 5.779529 TCTTGACCTGAAGTACGTTAGTT 57.220 39.130 0.00 0.00 0.00 2.24
318 319 6.882610 TCTTGACCTGAAGTACGTTAGTTA 57.117 37.500 0.00 0.00 0.00 2.24
319 320 7.458409 TCTTGACCTGAAGTACGTTAGTTAT 57.542 36.000 0.00 0.00 0.00 1.89
320 321 8.565896 TCTTGACCTGAAGTACGTTAGTTATA 57.434 34.615 0.00 0.00 0.00 0.98
321 322 8.671921 TCTTGACCTGAAGTACGTTAGTTATAG 58.328 37.037 0.00 0.00 0.00 1.31
322 323 8.565896 TTGACCTGAAGTACGTTAGTTATAGA 57.434 34.615 0.00 0.00 0.00 1.98
323 324 7.978982 TGACCTGAAGTACGTTAGTTATAGAC 58.021 38.462 0.00 0.00 0.00 2.59
324 325 7.066284 TGACCTGAAGTACGTTAGTTATAGACC 59.934 40.741 0.00 0.00 0.00 3.85
325 326 6.886459 ACCTGAAGTACGTTAGTTATAGACCA 59.114 38.462 0.00 0.00 0.00 4.02
326 327 7.394359 ACCTGAAGTACGTTAGTTATAGACCAA 59.606 37.037 0.00 0.00 0.00 3.67
327 328 8.411683 CCTGAAGTACGTTAGTTATAGACCAAT 58.588 37.037 0.00 0.00 0.00 3.16
328 329 9.448294 CTGAAGTACGTTAGTTATAGACCAATC 57.552 37.037 0.00 0.00 0.00 2.67
329 330 9.182214 TGAAGTACGTTAGTTATAGACCAATCT 57.818 33.333 0.00 0.00 39.15 2.40
339 340 7.510407 AGTTATAGACCAATCTAAAGAAGGCC 58.490 38.462 0.00 0.00 40.88 5.19
340 341 7.348537 AGTTATAGACCAATCTAAAGAAGGCCT 59.651 37.037 0.00 0.00 40.88 5.19
341 342 4.227864 AGACCAATCTAAAGAAGGCCTG 57.772 45.455 5.69 0.00 31.46 4.85
342 343 3.054065 AGACCAATCTAAAGAAGGCCTGG 60.054 47.826 5.69 1.58 31.46 4.45
343 344 2.649816 ACCAATCTAAAGAAGGCCTGGT 59.350 45.455 5.69 2.38 31.09 4.00
344 345 3.282885 CCAATCTAAAGAAGGCCTGGTC 58.717 50.000 5.69 0.00 0.00 4.02
345 346 3.054065 CCAATCTAAAGAAGGCCTGGTCT 60.054 47.826 5.69 2.73 0.00 3.85
346 347 4.568592 CCAATCTAAAGAAGGCCTGGTCTT 60.569 45.833 14.50 14.50 35.59 3.01
347 348 3.983044 TCTAAAGAAGGCCTGGTCTTC 57.017 47.619 29.19 29.19 43.71 2.87
351 352 3.542046 GAAGGCCTGGTCTTCTCAC 57.458 57.895 29.11 7.68 40.64 3.51
352 353 0.035915 GAAGGCCTGGTCTTCTCACC 60.036 60.000 29.11 7.32 40.64 4.02
353 354 0.768221 AAGGCCTGGTCTTCTCACCA 60.768 55.000 5.69 0.00 44.69 4.17
354 355 1.003233 GGCCTGGTCTTCTCACCAC 60.003 63.158 0.00 0.00 41.84 4.16
355 356 1.484444 GGCCTGGTCTTCTCACCACT 61.484 60.000 0.00 0.00 41.84 4.00
356 357 0.398318 GCCTGGTCTTCTCACCACTT 59.602 55.000 0.00 0.00 41.84 3.16
357 358 1.623811 GCCTGGTCTTCTCACCACTTA 59.376 52.381 0.00 0.00 41.84 2.24
358 359 2.038557 GCCTGGTCTTCTCACCACTTAA 59.961 50.000 0.00 0.00 41.84 1.85
359 360 3.866449 GCCTGGTCTTCTCACCACTTAAG 60.866 52.174 0.00 0.00 41.84 1.85
360 361 3.325135 CCTGGTCTTCTCACCACTTAAGT 59.675 47.826 1.12 1.12 41.84 2.24
361 362 4.527038 CCTGGTCTTCTCACCACTTAAGTA 59.473 45.833 8.04 0.00 41.84 2.24
362 363 5.011738 CCTGGTCTTCTCACCACTTAAGTAA 59.988 44.000 8.04 0.00 41.84 2.24
363 364 6.295916 CCTGGTCTTCTCACCACTTAAGTAAT 60.296 42.308 8.04 0.00 41.84 1.89
364 365 7.093465 CCTGGTCTTCTCACCACTTAAGTAATA 60.093 40.741 8.04 0.00 41.84 0.98
365 366 8.197592 TGGTCTTCTCACCACTTAAGTAATAA 57.802 34.615 8.04 0.00 41.84 1.40
366 367 8.822805 TGGTCTTCTCACCACTTAAGTAATAAT 58.177 33.333 8.04 0.00 41.84 1.28
392 393 7.707467 ATAACAATACTAAATGGGGAGGAGT 57.293 36.000 0.00 0.00 0.00 3.85
393 394 6.402981 AACAATACTAAATGGGGAGGAGTT 57.597 37.500 0.00 0.00 0.00 3.01
394 395 6.402981 ACAATACTAAATGGGGAGGAGTTT 57.597 37.500 0.00 0.00 0.00 2.66
395 396 6.800890 ACAATACTAAATGGGGAGGAGTTTT 58.199 36.000 0.00 0.00 0.00 2.43
396 397 7.246027 ACAATACTAAATGGGGAGGAGTTTTT 58.754 34.615 0.00 0.00 0.00 1.94
585 590 2.943033 CTCTCTCTCTCTCCGTTCTTCC 59.057 54.545 0.00 0.00 0.00 3.46
609 614 3.808726 CCTAGCTCACTCAAATCTGCATC 59.191 47.826 0.00 0.00 0.00 3.91
665 670 2.616842 GGTTCGTTCCTGTGTGTTTCAT 59.383 45.455 0.00 0.00 0.00 2.57
821 1028 4.543689 TCGTTCTTCCTGGTACCTATCAT 58.456 43.478 14.36 0.00 0.00 2.45
824 1031 2.628178 TCTTCCTGGTACCTATCATGCG 59.372 50.000 14.36 0.00 0.00 4.73
972 1190 6.704493 GTGGTGAGTCTTACAATTGTTGAGTA 59.296 38.462 17.78 0.00 0.00 2.59
1141 1359 1.177401 GGAACCAAATCCAGTGAGGC 58.823 55.000 0.00 0.00 39.42 4.70
1299 1526 8.941995 ATGATAGAGTTCTAGTATGGCTGTTA 57.058 34.615 0.00 0.00 0.00 2.41
1470 1697 4.448060 GGCACAAAGTCTGTAACAGAGTAC 59.552 45.833 0.00 0.00 42.55 2.73
1487 1714 3.472652 AGTACGCTGGTGAATTGAAACA 58.527 40.909 0.00 0.00 0.00 2.83
1501 1728 3.916359 TGAAACAGTTGTACAGGGACA 57.084 42.857 0.00 0.00 0.00 4.02
1580 1807 1.890876 TGGTTTGAGACGATTGTGGG 58.109 50.000 0.00 0.00 0.00 4.61
1767 1994 5.412594 CCGTGTGGCTTTATCTATGCAATAT 59.587 40.000 0.00 0.00 0.00 1.28
1817 2046 8.050170 CGAAATAGACAAAAACAAGTTGCTTTC 58.950 33.333 1.81 0.00 0.00 2.62
2378 2616 9.739276 AATAAATCTCATGGTTGTAGAAGTTGA 57.261 29.630 0.00 0.00 0.00 3.18
2393 2631 4.631813 AGAAGTTGATTTGATCCTACGTGC 59.368 41.667 0.00 0.00 0.00 5.34
2395 2633 4.184629 AGTTGATTTGATCCTACGTGCTC 58.815 43.478 0.00 0.00 0.00 4.26
2519 2779 3.937814 AGAGTTATTGTTGCATCACCGA 58.062 40.909 0.00 0.00 0.00 4.69
2901 3162 4.439700 CGGACAACGGTACAGAATATGTCT 60.440 45.833 17.32 0.00 40.25 3.41
2903 3164 6.207213 GGACAACGGTACAGAATATGTCTAG 58.793 44.000 17.32 0.00 42.70 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.009631 TCATTCGTGGATTGGTTTGATTCT 58.990 37.500 0.00 0.00 0.00 2.40
1 2 5.309323 TCATTCGTGGATTGGTTTGATTC 57.691 39.130 0.00 0.00 0.00 2.52
3 4 5.418524 TGATTCATTCGTGGATTGGTTTGAT 59.581 36.000 0.00 0.00 0.00 2.57
5 6 5.058149 TGATTCATTCGTGGATTGGTTTG 57.942 39.130 0.00 0.00 0.00 2.93
6 7 5.009631 TCTGATTCATTCGTGGATTGGTTT 58.990 37.500 0.00 0.00 0.00 3.27
7 8 4.588899 TCTGATTCATTCGTGGATTGGTT 58.411 39.130 0.00 0.00 0.00 3.67
8 9 4.194640 CTCTGATTCATTCGTGGATTGGT 58.805 43.478 0.00 0.00 0.00 3.67
9 10 3.003068 GCTCTGATTCATTCGTGGATTGG 59.997 47.826 0.00 0.00 0.00 3.16
10 11 3.003068 GGCTCTGATTCATTCGTGGATTG 59.997 47.826 0.00 0.00 0.00 2.67
11 12 3.209410 GGCTCTGATTCATTCGTGGATT 58.791 45.455 0.00 0.00 0.00 3.01
12 13 2.171237 TGGCTCTGATTCATTCGTGGAT 59.829 45.455 0.00 0.00 0.00 3.41
13 14 1.554617 TGGCTCTGATTCATTCGTGGA 59.445 47.619 0.00 0.00 0.00 4.02
14 15 1.938577 CTGGCTCTGATTCATTCGTGG 59.061 52.381 0.00 0.00 0.00 4.94
15 16 1.329906 GCTGGCTCTGATTCATTCGTG 59.670 52.381 0.00 0.00 0.00 4.35
16 17 1.065926 TGCTGGCTCTGATTCATTCGT 60.066 47.619 0.00 0.00 0.00 3.85
17 18 1.329906 GTGCTGGCTCTGATTCATTCG 59.670 52.381 0.00 0.00 0.00 3.34
18 19 1.674962 GGTGCTGGCTCTGATTCATTC 59.325 52.381 0.00 0.00 0.00 2.67
19 20 1.005097 TGGTGCTGGCTCTGATTCATT 59.995 47.619 0.00 0.00 0.00 2.57
20 21 0.622136 TGGTGCTGGCTCTGATTCAT 59.378 50.000 0.00 0.00 0.00 2.57
21 22 0.321919 GTGGTGCTGGCTCTGATTCA 60.322 55.000 0.00 0.00 0.00 2.57
22 23 0.035630 AGTGGTGCTGGCTCTGATTC 60.036 55.000 0.00 0.00 0.00 2.52
23 24 0.035630 GAGTGGTGCTGGCTCTGATT 60.036 55.000 0.00 0.00 0.00 2.57
24 25 1.601171 GAGTGGTGCTGGCTCTGAT 59.399 57.895 0.00 0.00 0.00 2.90
25 26 2.587247 GGAGTGGTGCTGGCTCTGA 61.587 63.158 0.00 0.00 0.00 3.27
26 27 2.046507 GGAGTGGTGCTGGCTCTG 60.047 66.667 0.00 0.00 0.00 3.35
27 28 2.527624 TGGAGTGGTGCTGGCTCT 60.528 61.111 0.00 0.00 0.00 4.09
28 29 2.359230 GTGGAGTGGTGCTGGCTC 60.359 66.667 0.00 0.00 0.00 4.70
29 30 4.320456 CGTGGAGTGGTGCTGGCT 62.320 66.667 0.00 0.00 0.00 4.75
32 33 4.969196 ACGCGTGGAGTGGTGCTG 62.969 66.667 12.93 0.00 33.90 4.41
33 34 4.664677 GACGCGTGGAGTGGTGCT 62.665 66.667 20.70 0.00 33.90 4.40
35 36 3.719471 TATTCGACGCGTGGAGTGGTG 62.719 57.143 25.34 2.87 33.90 4.17
36 37 1.588824 TATTCGACGCGTGGAGTGGT 61.589 55.000 25.34 14.97 33.90 4.16
37 38 1.138036 TATTCGACGCGTGGAGTGG 59.862 57.895 25.34 5.30 33.90 4.00
38 39 1.138047 GGTATTCGACGCGTGGAGTG 61.138 60.000 25.34 7.48 0.00 3.51
39 40 1.138247 GGTATTCGACGCGTGGAGT 59.862 57.895 20.70 21.27 0.00 3.85
40 41 1.588139 GGGTATTCGACGCGTGGAG 60.588 63.158 20.70 8.23 0.00 3.86
41 42 2.048023 AGGGTATTCGACGCGTGGA 61.048 57.895 20.70 20.57 45.51 4.02
42 43 1.876714 CAGGGTATTCGACGCGTGG 60.877 63.158 20.70 17.88 45.51 4.94
43 44 2.514013 GCAGGGTATTCGACGCGTG 61.514 63.158 20.70 9.70 45.51 5.34
44 45 2.202703 GCAGGGTATTCGACGCGT 60.203 61.111 13.85 13.85 45.51 6.01
45 46 3.320078 CGCAGGGTATTCGACGCG 61.320 66.667 3.53 3.53 45.51 6.01
46 47 1.808390 AACGCAGGGTATTCGACGC 60.808 57.895 0.00 0.00 41.29 5.19
47 48 0.734942 ACAACGCAGGGTATTCGACG 60.735 55.000 0.00 0.00 0.00 5.12
48 49 1.435577 AACAACGCAGGGTATTCGAC 58.564 50.000 0.00 0.00 0.00 4.20
49 50 2.070783 GAAACAACGCAGGGTATTCGA 58.929 47.619 0.00 0.00 0.00 3.71
50 51 1.801771 TGAAACAACGCAGGGTATTCG 59.198 47.619 0.00 0.00 0.00 3.34
51 52 3.907894 TTGAAACAACGCAGGGTATTC 57.092 42.857 0.00 0.00 0.00 1.75
52 53 4.864704 AATTGAAACAACGCAGGGTATT 57.135 36.364 0.00 0.00 0.00 1.89
53 54 5.250200 TCTAATTGAAACAACGCAGGGTAT 58.750 37.500 0.00 0.00 0.00 2.73
54 55 4.643463 TCTAATTGAAACAACGCAGGGTA 58.357 39.130 0.00 0.00 0.00 3.69
55 56 3.482436 TCTAATTGAAACAACGCAGGGT 58.518 40.909 0.00 0.00 0.00 4.34
56 57 3.502211 ACTCTAATTGAAACAACGCAGGG 59.498 43.478 0.00 0.00 0.00 4.45
57 58 4.749245 ACTCTAATTGAAACAACGCAGG 57.251 40.909 0.00 0.00 0.00 4.85
58 59 5.637810 TCCTACTCTAATTGAAACAACGCAG 59.362 40.000 0.00 0.00 0.00 5.18
59 60 5.543714 TCCTACTCTAATTGAAACAACGCA 58.456 37.500 0.00 0.00 0.00 5.24
60 61 6.663944 ATCCTACTCTAATTGAAACAACGC 57.336 37.500 0.00 0.00 0.00 4.84
61 62 9.529325 TCATATCCTACTCTAATTGAAACAACG 57.471 33.333 0.00 0.00 0.00 4.10
72 73 9.931698 TCCTGTTAAACTCATATCCTACTCTAA 57.068 33.333 0.00 0.00 0.00 2.10
73 74 9.931698 TTCCTGTTAAACTCATATCCTACTCTA 57.068 33.333 0.00 0.00 0.00 2.43
74 75 8.840200 TTCCTGTTAAACTCATATCCTACTCT 57.160 34.615 0.00 0.00 0.00 3.24
75 76 9.886132 TTTTCCTGTTAAACTCATATCCTACTC 57.114 33.333 0.00 0.00 0.00 2.59
103 104 9.255304 GCCATGTTCTTTTTGTTTAACATCTTA 57.745 29.630 0.00 0.00 39.80 2.10
104 105 7.986889 AGCCATGTTCTTTTTGTTTAACATCTT 59.013 29.630 0.00 0.00 39.80 2.40
105 106 7.500141 AGCCATGTTCTTTTTGTTTAACATCT 58.500 30.769 0.00 0.00 39.80 2.90
106 107 7.713764 AGCCATGTTCTTTTTGTTTAACATC 57.286 32.000 0.00 0.00 39.80 3.06
107 108 8.200792 TGTAGCCATGTTCTTTTTGTTTAACAT 58.799 29.630 0.00 0.00 41.87 2.71
108 109 7.548097 TGTAGCCATGTTCTTTTTGTTTAACA 58.452 30.769 0.00 0.00 36.37 2.41
109 110 7.995463 TGTAGCCATGTTCTTTTTGTTTAAC 57.005 32.000 0.00 0.00 0.00 2.01
110 111 9.606631 AAATGTAGCCATGTTCTTTTTGTTTAA 57.393 25.926 0.00 0.00 0.00 1.52
111 112 9.039870 CAAATGTAGCCATGTTCTTTTTGTTTA 57.960 29.630 0.00 0.00 0.00 2.01
112 113 7.012232 CCAAATGTAGCCATGTTCTTTTTGTTT 59.988 33.333 0.00 0.00 0.00 2.83
113 114 6.482973 CCAAATGTAGCCATGTTCTTTTTGTT 59.517 34.615 0.00 0.00 0.00 2.83
114 115 5.990996 CCAAATGTAGCCATGTTCTTTTTGT 59.009 36.000 0.00 0.00 0.00 2.83
115 116 6.222389 TCCAAATGTAGCCATGTTCTTTTTG 58.778 36.000 0.00 1.42 0.00 2.44
116 117 6.418057 TCCAAATGTAGCCATGTTCTTTTT 57.582 33.333 0.00 0.00 0.00 1.94
117 118 5.567423 GCTCCAAATGTAGCCATGTTCTTTT 60.567 40.000 0.00 0.00 32.40 2.27
118 119 4.082026 GCTCCAAATGTAGCCATGTTCTTT 60.082 41.667 0.00 0.00 32.40 2.52
119 120 3.445096 GCTCCAAATGTAGCCATGTTCTT 59.555 43.478 0.00 0.00 32.40 2.52
120 121 3.019564 GCTCCAAATGTAGCCATGTTCT 58.980 45.455 0.00 0.00 32.40 3.01
121 122 3.019564 AGCTCCAAATGTAGCCATGTTC 58.980 45.455 0.00 0.00 39.64 3.18
122 123 3.019564 GAGCTCCAAATGTAGCCATGTT 58.980 45.455 0.87 0.00 39.64 2.71
123 124 2.648059 GAGCTCCAAATGTAGCCATGT 58.352 47.619 0.87 0.00 39.64 3.21
124 125 1.952296 GGAGCTCCAAATGTAGCCATG 59.048 52.381 28.43 0.00 39.64 3.66
125 126 1.475751 CGGAGCTCCAAATGTAGCCAT 60.476 52.381 31.67 0.00 39.64 4.40
126 127 0.107703 CGGAGCTCCAAATGTAGCCA 60.108 55.000 31.67 0.00 39.64 4.75
127 128 0.815615 CCGGAGCTCCAAATGTAGCC 60.816 60.000 31.67 1.85 39.64 3.93
128 129 0.107654 ACCGGAGCTCCAAATGTAGC 60.108 55.000 31.67 2.06 39.08 3.58
129 130 1.656652 CACCGGAGCTCCAAATGTAG 58.343 55.000 31.67 13.64 35.14 2.74
130 131 0.251916 CCACCGGAGCTCCAAATGTA 59.748 55.000 31.67 0.00 35.14 2.29
131 132 1.002134 CCACCGGAGCTCCAAATGT 60.002 57.895 31.67 19.08 35.14 2.71
132 133 0.107017 ATCCACCGGAGCTCCAAATG 60.107 55.000 31.67 23.65 34.05 2.32
133 134 0.625849 AATCCACCGGAGCTCCAAAT 59.374 50.000 31.67 13.86 34.05 2.32
134 135 1.281419 TAATCCACCGGAGCTCCAAA 58.719 50.000 31.67 12.27 34.05 3.28
135 136 1.140852 CATAATCCACCGGAGCTCCAA 59.859 52.381 31.67 11.91 34.05 3.53
136 137 0.758734 CATAATCCACCGGAGCTCCA 59.241 55.000 31.67 13.03 34.05 3.86
137 138 1.048601 TCATAATCCACCGGAGCTCC 58.951 55.000 23.79 23.79 34.05 4.70
138 139 4.537135 TTATCATAATCCACCGGAGCTC 57.463 45.455 9.46 4.71 34.05 4.09
139 140 5.491982 GAATTATCATAATCCACCGGAGCT 58.508 41.667 9.46 0.00 34.05 4.09
140 141 4.636206 GGAATTATCATAATCCACCGGAGC 59.364 45.833 9.46 0.00 34.05 4.70
141 142 5.804639 TGGAATTATCATAATCCACCGGAG 58.195 41.667 9.46 0.00 37.05 4.63
142 143 5.834281 TGGAATTATCATAATCCACCGGA 57.166 39.130 9.46 0.00 37.05 5.14
143 144 5.945784 ACATGGAATTATCATAATCCACCGG 59.054 40.000 0.00 0.00 44.25 5.28
144 145 7.362056 GGAACATGGAATTATCATAATCCACCG 60.362 40.741 9.49 7.57 44.25 4.94
145 146 7.093771 GGGAACATGGAATTATCATAATCCACC 60.094 40.741 17.07 6.18 44.25 4.61
146 147 7.451255 TGGGAACATGGAATTATCATAATCCAC 59.549 37.037 17.07 11.48 44.25 4.02
147 148 7.533967 TGGGAACATGGAATTATCATAATCCA 58.466 34.615 17.07 9.64 45.42 3.41
148 149 8.306761 GTTGGGAACATGGAATTATCATAATCC 58.693 37.037 0.00 11.82 42.32 3.01
149 150 8.306761 GGTTGGGAACATGGAATTATCATAATC 58.693 37.037 0.00 0.00 42.32 1.75
150 151 7.235399 GGGTTGGGAACATGGAATTATCATAAT 59.765 37.037 0.00 0.00 42.32 1.28
151 152 6.553100 GGGTTGGGAACATGGAATTATCATAA 59.447 38.462 0.00 0.00 42.32 1.90
152 153 6.074648 GGGTTGGGAACATGGAATTATCATA 58.925 40.000 0.00 0.00 42.32 2.15
153 154 4.901250 GGGTTGGGAACATGGAATTATCAT 59.099 41.667 0.00 0.00 42.32 2.45
154 155 4.285863 GGGTTGGGAACATGGAATTATCA 58.714 43.478 0.00 0.00 42.32 2.15
155 156 3.317993 CGGGTTGGGAACATGGAATTATC 59.682 47.826 0.00 0.00 42.32 1.75
156 157 3.295973 CGGGTTGGGAACATGGAATTAT 58.704 45.455 0.00 0.00 42.32 1.28
157 158 2.729194 CGGGTTGGGAACATGGAATTA 58.271 47.619 0.00 0.00 42.32 1.40
158 159 1.555967 CGGGTTGGGAACATGGAATT 58.444 50.000 0.00 0.00 42.32 2.17
159 160 0.970427 GCGGGTTGGGAACATGGAAT 60.970 55.000 0.00 0.00 42.32 3.01
160 161 1.605165 GCGGGTTGGGAACATGGAA 60.605 57.895 0.00 0.00 42.32 3.53
161 162 2.034999 GCGGGTTGGGAACATGGA 59.965 61.111 0.00 0.00 42.32 3.41
162 163 1.184970 AAAGCGGGTTGGGAACATGG 61.185 55.000 0.00 0.00 42.32 3.66
163 164 0.678950 AAAAGCGGGTTGGGAACATG 59.321 50.000 0.00 0.00 42.32 3.21
164 165 0.678950 CAAAAGCGGGTTGGGAACAT 59.321 50.000 0.00 0.00 42.32 2.71
165 166 0.395862 TCAAAAGCGGGTTGGGAACA 60.396 50.000 0.00 0.00 39.83 3.18
166 167 0.747852 TTCAAAAGCGGGTTGGGAAC 59.252 50.000 0.00 0.00 0.00 3.62
167 168 1.616374 GATTCAAAAGCGGGTTGGGAA 59.384 47.619 8.37 8.37 0.00 3.97
168 169 1.253100 GATTCAAAAGCGGGTTGGGA 58.747 50.000 0.00 0.00 0.00 4.37
169 170 0.965439 TGATTCAAAAGCGGGTTGGG 59.035 50.000 0.00 0.00 0.00 4.12
170 171 1.613437 ACTGATTCAAAAGCGGGTTGG 59.387 47.619 0.00 0.00 0.00 3.77
171 172 4.226761 GTTACTGATTCAAAAGCGGGTTG 58.773 43.478 0.00 0.00 0.00 3.77
172 173 3.886505 TGTTACTGATTCAAAAGCGGGTT 59.113 39.130 0.00 0.00 0.00 4.11
173 174 3.482436 TGTTACTGATTCAAAAGCGGGT 58.518 40.909 0.00 0.00 0.00 5.28
174 175 4.497473 TTGTTACTGATTCAAAAGCGGG 57.503 40.909 0.00 0.00 0.00 6.13
175 176 6.842163 AGTATTGTTACTGATTCAAAAGCGG 58.158 36.000 0.00 0.00 37.28 5.52
176 177 9.820229 TTTAGTATTGTTACTGATTCAAAAGCG 57.180 29.630 0.00 0.00 39.08 4.68
180 181 9.238368 CCCCTTTAGTATTGTTACTGATTCAAA 57.762 33.333 0.00 0.00 39.08 2.69
181 182 7.832187 CCCCCTTTAGTATTGTTACTGATTCAA 59.168 37.037 0.00 0.00 39.08 2.69
182 183 7.183112 TCCCCCTTTAGTATTGTTACTGATTCA 59.817 37.037 0.00 0.00 39.08 2.57
183 184 7.571025 TCCCCCTTTAGTATTGTTACTGATTC 58.429 38.462 0.00 0.00 39.08 2.52
184 185 7.519347 TCCCCCTTTAGTATTGTTACTGATT 57.481 36.000 0.00 0.00 39.08 2.57
185 186 7.404980 TCTTCCCCCTTTAGTATTGTTACTGAT 59.595 37.037 0.00 0.00 39.08 2.90
186 187 6.731919 TCTTCCCCCTTTAGTATTGTTACTGA 59.268 38.462 0.00 0.00 39.08 3.41
187 188 6.954232 TCTTCCCCCTTTAGTATTGTTACTG 58.046 40.000 0.00 0.00 39.08 2.74
188 189 6.734281 ACTCTTCCCCCTTTAGTATTGTTACT 59.266 38.462 0.00 0.00 41.57 2.24
189 190 6.955364 ACTCTTCCCCCTTTAGTATTGTTAC 58.045 40.000 0.00 0.00 0.00 2.50
190 191 7.578458 AACTCTTCCCCCTTTAGTATTGTTA 57.422 36.000 0.00 0.00 0.00 2.41
191 192 6.464530 AACTCTTCCCCCTTTAGTATTGTT 57.535 37.500 0.00 0.00 0.00 2.83
192 193 6.246163 CAAACTCTTCCCCCTTTAGTATTGT 58.754 40.000 0.00 0.00 0.00 2.71
193 194 5.652452 CCAAACTCTTCCCCCTTTAGTATTG 59.348 44.000 0.00 0.00 0.00 1.90
194 195 5.315109 ACCAAACTCTTCCCCCTTTAGTATT 59.685 40.000 0.00 0.00 0.00 1.89
195 196 4.856182 ACCAAACTCTTCCCCCTTTAGTAT 59.144 41.667 0.00 0.00 0.00 2.12
196 197 4.245308 ACCAAACTCTTCCCCCTTTAGTA 58.755 43.478 0.00 0.00 0.00 1.82
197 198 3.061369 ACCAAACTCTTCCCCCTTTAGT 58.939 45.455 0.00 0.00 0.00 2.24
198 199 3.808834 ACCAAACTCTTCCCCCTTTAG 57.191 47.619 0.00 0.00 0.00 1.85
199 200 4.546224 AAACCAAACTCTTCCCCCTTTA 57.454 40.909 0.00 0.00 0.00 1.85
200 201 3.414759 AAACCAAACTCTTCCCCCTTT 57.585 42.857 0.00 0.00 0.00 3.11
201 202 3.414759 AAAACCAAACTCTTCCCCCTT 57.585 42.857 0.00 0.00 0.00 3.95
202 203 3.414759 AAAAACCAAACTCTTCCCCCT 57.585 42.857 0.00 0.00 0.00 4.79
235 236 9.817809 CAAGTAAATTCTCAGTATAGGCAGTAA 57.182 33.333 0.00 0.00 0.00 2.24
236 237 9.197306 TCAAGTAAATTCTCAGTATAGGCAGTA 57.803 33.333 0.00 0.00 0.00 2.74
237 238 8.079211 TCAAGTAAATTCTCAGTATAGGCAGT 57.921 34.615 0.00 0.00 0.00 4.40
238 239 7.655328 CCTCAAGTAAATTCTCAGTATAGGCAG 59.345 40.741 0.00 0.00 0.00 4.85
239 240 7.125811 ACCTCAAGTAAATTCTCAGTATAGGCA 59.874 37.037 0.00 0.00 0.00 4.75
240 241 7.501844 ACCTCAAGTAAATTCTCAGTATAGGC 58.498 38.462 0.00 0.00 0.00 3.93
241 242 9.319143 CAACCTCAAGTAAATTCTCAGTATAGG 57.681 37.037 0.00 0.00 0.00 2.57
242 243 9.877178 ACAACCTCAAGTAAATTCTCAGTATAG 57.123 33.333 0.00 0.00 0.00 1.31
243 244 9.653287 CACAACCTCAAGTAAATTCTCAGTATA 57.347 33.333 0.00 0.00 0.00 1.47
244 245 8.157476 ACACAACCTCAAGTAAATTCTCAGTAT 58.843 33.333 0.00 0.00 0.00 2.12
245 246 7.506114 ACACAACCTCAAGTAAATTCTCAGTA 58.494 34.615 0.00 0.00 0.00 2.74
246 247 6.357367 ACACAACCTCAAGTAAATTCTCAGT 58.643 36.000 0.00 0.00 0.00 3.41
247 248 6.867662 ACACAACCTCAAGTAAATTCTCAG 57.132 37.500 0.00 0.00 0.00 3.35
248 249 6.934645 CCTACACAACCTCAAGTAAATTCTCA 59.065 38.462 0.00 0.00 0.00 3.27
249 250 6.935208 ACCTACACAACCTCAAGTAAATTCTC 59.065 38.462 0.00 0.00 0.00 2.87
250 251 6.838382 ACCTACACAACCTCAAGTAAATTCT 58.162 36.000 0.00 0.00 0.00 2.40
251 252 7.360361 CAACCTACACAACCTCAAGTAAATTC 58.640 38.462 0.00 0.00 0.00 2.17
252 253 6.264518 CCAACCTACACAACCTCAAGTAAATT 59.735 38.462 0.00 0.00 0.00 1.82
253 254 5.768164 CCAACCTACACAACCTCAAGTAAAT 59.232 40.000 0.00 0.00 0.00 1.40
254 255 5.127491 CCAACCTACACAACCTCAAGTAAA 58.873 41.667 0.00 0.00 0.00 2.01
255 256 4.164604 ACCAACCTACACAACCTCAAGTAA 59.835 41.667 0.00 0.00 0.00 2.24
256 257 3.712733 ACCAACCTACACAACCTCAAGTA 59.287 43.478 0.00 0.00 0.00 2.24
257 258 2.508300 ACCAACCTACACAACCTCAAGT 59.492 45.455 0.00 0.00 0.00 3.16
258 259 3.208747 ACCAACCTACACAACCTCAAG 57.791 47.619 0.00 0.00 0.00 3.02
259 260 3.655615 AACCAACCTACACAACCTCAA 57.344 42.857 0.00 0.00 0.00 3.02
260 261 3.054287 TCAAACCAACCTACACAACCTCA 60.054 43.478 0.00 0.00 0.00 3.86
261 262 3.314357 GTCAAACCAACCTACACAACCTC 59.686 47.826 0.00 0.00 0.00 3.85
262 263 3.284617 GTCAAACCAACCTACACAACCT 58.715 45.455 0.00 0.00 0.00 3.50
263 264 2.359848 GGTCAAACCAACCTACACAACC 59.640 50.000 0.00 0.00 38.42 3.77
264 265 3.703286 GGTCAAACCAACCTACACAAC 57.297 47.619 0.00 0.00 38.42 3.32
276 277 7.065923 GGTCAAGATATTTCTAGTGGTCAAACC 59.934 40.741 0.00 0.00 39.22 3.27
277 278 7.824779 AGGTCAAGATATTTCTAGTGGTCAAAC 59.175 37.037 0.00 0.00 0.00 2.93
278 279 7.824289 CAGGTCAAGATATTTCTAGTGGTCAAA 59.176 37.037 0.00 0.00 0.00 2.69
279 280 7.180229 TCAGGTCAAGATATTTCTAGTGGTCAA 59.820 37.037 0.00 0.00 0.00 3.18
280 281 6.667848 TCAGGTCAAGATATTTCTAGTGGTCA 59.332 38.462 0.00 0.00 0.00 4.02
281 282 7.113658 TCAGGTCAAGATATTTCTAGTGGTC 57.886 40.000 0.00 0.00 0.00 4.02
282 283 7.181125 ACTTCAGGTCAAGATATTTCTAGTGGT 59.819 37.037 0.00 0.00 0.00 4.16
283 284 7.560368 ACTTCAGGTCAAGATATTTCTAGTGG 58.440 38.462 0.00 0.00 0.00 4.00
284 285 9.522804 GTACTTCAGGTCAAGATATTTCTAGTG 57.477 37.037 0.00 0.00 0.00 2.74
285 286 8.407064 CGTACTTCAGGTCAAGATATTTCTAGT 58.593 37.037 0.00 0.00 0.00 2.57
286 287 8.407064 ACGTACTTCAGGTCAAGATATTTCTAG 58.593 37.037 0.00 0.00 0.00 2.43
287 288 8.289939 ACGTACTTCAGGTCAAGATATTTCTA 57.710 34.615 0.00 0.00 0.00 2.10
288 289 7.171630 ACGTACTTCAGGTCAAGATATTTCT 57.828 36.000 0.00 0.00 0.00 2.52
289 290 7.829378 AACGTACTTCAGGTCAAGATATTTC 57.171 36.000 0.00 0.00 0.00 2.17
290 291 8.529476 ACTAACGTACTTCAGGTCAAGATATTT 58.471 33.333 0.00 0.00 0.00 1.40
291 292 8.064336 ACTAACGTACTTCAGGTCAAGATATT 57.936 34.615 0.00 0.00 0.00 1.28
292 293 7.642082 ACTAACGTACTTCAGGTCAAGATAT 57.358 36.000 0.00 0.00 0.00 1.63
293 294 7.458409 AACTAACGTACTTCAGGTCAAGATA 57.542 36.000 0.00 0.00 0.00 1.98
294 295 5.979288 ACTAACGTACTTCAGGTCAAGAT 57.021 39.130 0.00 0.00 0.00 2.40
295 296 5.779529 AACTAACGTACTTCAGGTCAAGA 57.220 39.130 0.00 0.00 0.00 3.02
296 297 8.671921 TCTATAACTAACGTACTTCAGGTCAAG 58.328 37.037 0.00 0.00 0.00 3.02
297 298 8.454106 GTCTATAACTAACGTACTTCAGGTCAA 58.546 37.037 0.00 0.00 0.00 3.18
298 299 7.066284 GGTCTATAACTAACGTACTTCAGGTCA 59.934 40.741 0.00 0.00 0.00 4.02
299 300 7.066284 TGGTCTATAACTAACGTACTTCAGGTC 59.934 40.741 0.00 0.00 0.00 3.85
300 301 6.886459 TGGTCTATAACTAACGTACTTCAGGT 59.114 38.462 0.00 0.00 0.00 4.00
301 302 7.325660 TGGTCTATAACTAACGTACTTCAGG 57.674 40.000 0.00 0.00 0.00 3.86
302 303 9.448294 GATTGGTCTATAACTAACGTACTTCAG 57.552 37.037 0.00 0.00 30.36 3.02
303 304 9.182214 AGATTGGTCTATAACTAACGTACTTCA 57.818 33.333 0.00 0.00 30.36 3.02
313 314 8.648693 GGCCTTCTTTAGATTGGTCTATAACTA 58.351 37.037 0.00 0.00 36.84 2.24
314 315 7.348537 AGGCCTTCTTTAGATTGGTCTATAACT 59.651 37.037 0.00 0.00 36.84 2.24
315 316 7.442666 CAGGCCTTCTTTAGATTGGTCTATAAC 59.557 40.741 0.00 0.00 36.84 1.89
316 317 7.420214 CCAGGCCTTCTTTAGATTGGTCTATAA 60.420 40.741 0.00 0.00 36.84 0.98
317 318 6.043243 CCAGGCCTTCTTTAGATTGGTCTATA 59.957 42.308 0.00 0.00 36.84 1.31
318 319 5.163152 CCAGGCCTTCTTTAGATTGGTCTAT 60.163 44.000 0.00 0.00 36.84 1.98
319 320 4.164221 CCAGGCCTTCTTTAGATTGGTCTA 59.836 45.833 0.00 0.00 33.40 2.59
320 321 3.054065 CCAGGCCTTCTTTAGATTGGTCT 60.054 47.826 0.00 2.00 34.75 3.85
321 322 3.282885 CCAGGCCTTCTTTAGATTGGTC 58.717 50.000 0.00 0.00 0.00 4.02
322 323 2.649816 ACCAGGCCTTCTTTAGATTGGT 59.350 45.455 0.00 0.13 0.00 3.67
323 324 3.054065 AGACCAGGCCTTCTTTAGATTGG 60.054 47.826 0.00 0.00 0.00 3.16
324 325 4.227864 AGACCAGGCCTTCTTTAGATTG 57.772 45.455 0.00 0.00 0.00 2.67
325 326 4.538089 AGAAGACCAGGCCTTCTTTAGATT 59.462 41.667 18.68 0.00 45.71 2.40
326 327 4.107820 AGAAGACCAGGCCTTCTTTAGAT 58.892 43.478 18.68 5.56 45.71 1.98
327 328 3.521727 AGAAGACCAGGCCTTCTTTAGA 58.478 45.455 18.68 0.00 45.71 2.10
328 329 3.990959 AGAAGACCAGGCCTTCTTTAG 57.009 47.619 18.68 0.00 45.71 1.85
333 334 0.035915 GGTGAGAAGACCAGGCCTTC 60.036 60.000 0.00 7.43 40.10 3.46
334 335 0.768221 TGGTGAGAAGACCAGGCCTT 60.768 55.000 0.00 0.00 41.30 4.35
335 336 1.152030 TGGTGAGAAGACCAGGCCT 60.152 57.895 0.00 0.00 41.30 5.19
336 337 1.003233 GTGGTGAGAAGACCAGGCC 60.003 63.158 0.00 0.00 46.96 5.19
337 338 0.398318 AAGTGGTGAGAAGACCAGGC 59.602 55.000 0.00 0.00 46.96 4.85
338 339 3.325135 ACTTAAGTGGTGAGAAGACCAGG 59.675 47.826 7.48 0.00 46.96 4.45
339 340 4.608948 ACTTAAGTGGTGAGAAGACCAG 57.391 45.455 7.48 0.00 46.96 4.00
340 341 6.681729 ATTACTTAAGTGGTGAGAAGACCA 57.318 37.500 18.56 0.00 44.09 4.02
366 367 9.232882 ACTCCTCCCCATTTAGTATTGTTATTA 57.767 33.333 0.00 0.00 0.00 0.98
367 368 8.114301 ACTCCTCCCCATTTAGTATTGTTATT 57.886 34.615 0.00 0.00 0.00 1.40
368 369 7.707467 ACTCCTCCCCATTTAGTATTGTTAT 57.293 36.000 0.00 0.00 0.00 1.89
369 370 7.519347 AACTCCTCCCCATTTAGTATTGTTA 57.481 36.000 0.00 0.00 0.00 2.41
370 371 6.402981 AACTCCTCCCCATTTAGTATTGTT 57.597 37.500 0.00 0.00 0.00 2.83
371 372 6.402981 AAACTCCTCCCCATTTAGTATTGT 57.597 37.500 0.00 0.00 0.00 2.71
372 373 7.718334 AAAAACTCCTCCCCATTTAGTATTG 57.282 36.000 0.00 0.00 0.00 1.90
415 416 8.902806 CCAACATTCTCATTATAGGCAGTAAAA 58.097 33.333 0.00 0.00 0.00 1.52
416 417 8.052748 ACCAACATTCTCATTATAGGCAGTAAA 58.947 33.333 0.00 0.00 0.00 2.01
417 418 7.498900 CACCAACATTCTCATTATAGGCAGTAA 59.501 37.037 0.00 0.00 0.00 2.24
418 419 6.992123 CACCAACATTCTCATTATAGGCAGTA 59.008 38.462 0.00 0.00 0.00 2.74
419 420 5.824624 CACCAACATTCTCATTATAGGCAGT 59.175 40.000 0.00 0.00 0.00 4.40
420 421 5.824624 ACACCAACATTCTCATTATAGGCAG 59.175 40.000 0.00 0.00 0.00 4.85
421 422 5.589855 CACACCAACATTCTCATTATAGGCA 59.410 40.000 0.00 0.00 0.00 4.75
422 423 5.822519 TCACACCAACATTCTCATTATAGGC 59.177 40.000 0.00 0.00 0.00 3.93
423 424 7.050377 ACTCACACCAACATTCTCATTATAGG 58.950 38.462 0.00 0.00 0.00 2.57
424 425 8.393366 CAACTCACACCAACATTCTCATTATAG 58.607 37.037 0.00 0.00 0.00 1.31
425 426 7.336679 CCAACTCACACCAACATTCTCATTATA 59.663 37.037 0.00 0.00 0.00 0.98
426 427 6.151648 CCAACTCACACCAACATTCTCATTAT 59.848 38.462 0.00 0.00 0.00 1.28
427 428 5.473162 CCAACTCACACCAACATTCTCATTA 59.527 40.000 0.00 0.00 0.00 1.90
428 429 4.279169 CCAACTCACACCAACATTCTCATT 59.721 41.667 0.00 0.00 0.00 2.57
429 430 3.822735 CCAACTCACACCAACATTCTCAT 59.177 43.478 0.00 0.00 0.00 2.90
430 431 3.118075 TCCAACTCACACCAACATTCTCA 60.118 43.478 0.00 0.00 0.00 3.27
431 432 3.476552 TCCAACTCACACCAACATTCTC 58.523 45.455 0.00 0.00 0.00 2.87
432 433 3.576078 TCCAACTCACACCAACATTCT 57.424 42.857 0.00 0.00 0.00 2.40
433 434 4.853924 ATTCCAACTCACACCAACATTC 57.146 40.909 0.00 0.00 0.00 2.67
434 435 5.612725 AAATTCCAACTCACACCAACATT 57.387 34.783 0.00 0.00 0.00 2.71
585 590 2.935201 GCAGATTTGAGTGAGCTAGGTG 59.065 50.000 0.00 0.00 0.00 4.00
665 670 2.465860 TCTTCGCTCAAAATTCCGGA 57.534 45.000 0.00 0.00 0.00 5.14
821 1028 3.636764 TGGAGATGAACTAGCTATTCGCA 59.363 43.478 0.00 0.00 42.61 5.10
824 1031 7.550906 ACAAACTTGGAGATGAACTAGCTATTC 59.449 37.037 0.00 1.66 0.00 1.75
907 1114 6.216801 TGTAGTACACGAGCCTGATTTAAT 57.783 37.500 0.00 0.00 0.00 1.40
972 1190 0.393820 CAAAAGCACACCCCAAGCAT 59.606 50.000 0.00 0.00 0.00 3.79
1141 1359 0.976641 TAGTTGCCAGGACCTGACAG 59.023 55.000 23.77 7.47 32.44 3.51
1299 1526 3.028850 CACAATTGGATCCATGCTTCCT 58.971 45.455 17.06 0.00 32.95 3.36
1470 1697 3.044986 CAACTGTTTCAATTCACCAGCG 58.955 45.455 0.00 0.00 0.00 5.18
1487 1714 1.699634 AGTGCATGTCCCTGTACAACT 59.300 47.619 0.00 0.00 34.59 3.16
1501 1728 6.261826 GCTTGAAAAGGATGATAGTAGTGCAT 59.738 38.462 0.00 0.00 46.35 3.96
1580 1807 3.604582 AGTCCATCTAGAAACAGCTTGC 58.395 45.455 0.00 0.00 0.00 4.01
1786 2013 5.746721 ACTTGTTTTTGTCTATTTCGCCAAC 59.253 36.000 0.00 0.00 0.00 3.77
1792 2019 9.087424 AGAAAGCAACTTGTTTTTGTCTATTTC 57.913 29.630 5.22 0.00 30.93 2.17
1794 2021 8.250332 TCAGAAAGCAACTTGTTTTTGTCTATT 58.750 29.630 5.22 0.00 30.93 1.73
1817 2046 8.352201 TGTGTCCTTTTCTTTTACAATGATCAG 58.648 33.333 0.09 0.00 0.00 2.90
1931 2160 1.422024 TGGTGTGGTTAGCTTGCCTTA 59.578 47.619 0.00 0.00 0.00 2.69
2378 2616 2.169352 AGCAGAGCACGTAGGATCAAAT 59.831 45.455 0.00 0.00 0.00 2.32
2395 2633 1.556911 TCCCTAGCTCCTGAAAAGCAG 59.443 52.381 0.00 0.00 42.35 4.24
2519 2779 0.411058 AAGAAGGATGCCCAAGCCTT 59.589 50.000 0.00 0.00 44.32 4.35
2723 2983 3.785122 AAACCACCGGTGCCCAGAC 62.785 63.158 29.75 0.00 35.34 3.51
2901 3162 6.642131 GCAAGAAACAATTCAAACTCATGCTA 59.358 34.615 0.00 0.00 38.06 3.49
2903 3164 5.464389 AGCAAGAAACAATTCAAACTCATGC 59.536 36.000 0.00 0.00 38.06 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.