Multiple sequence alignment - TraesCS2A01G553600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G553600 chr2A 100.000 5142 0 0 1 5142 758949843 758954984 0.000000e+00 9496.0
1 TraesCS2A01G553600 chr2A 79.570 465 58 21 24 458 758945064 758945521 1.080000e-76 298.0
2 TraesCS2A01G553600 chr2B 88.617 3971 274 77 491 4368 772214539 772218424 0.000000e+00 4665.0
3 TraesCS2A01G553600 chr2B 90.154 325 26 5 2 321 772213798 772214121 7.960000e-113 418.0
4 TraesCS2A01G553600 chr2B 89.697 165 17 0 24 188 772209091 772209255 1.450000e-50 211.0
5 TraesCS2A01G553600 chr2B 88.800 125 9 2 318 437 772214402 772214526 1.150000e-31 148.0
6 TraesCS2A01G553600 chr2B 90.265 113 10 1 350 462 772209615 772209726 4.150000e-31 147.0
7 TraesCS2A01G553600 chr2B 89.796 98 9 1 5014 5110 772218438 772218535 1.940000e-24 124.0
8 TraesCS2A01G553600 chr2D 93.688 1600 87 11 846 2439 629392126 629393717 0.000000e+00 2383.0
9 TraesCS2A01G553600 chr2D 87.656 1604 127 39 2860 4441 629394406 629395960 0.000000e+00 1799.0
10 TraesCS2A01G553600 chr2D 91.714 350 13 5 495 844 629391738 629392071 6.030000e-129 472.0
11 TraesCS2A01G553600 chr2D 95.775 284 11 1 4086 4368 629438512 629438795 1.690000e-124 457.0
12 TraesCS2A01G553600 chr2D 94.253 174 9 1 4970 5142 629438795 629438968 1.100000e-66 265.0
13 TraesCS2A01G553600 chr2D 78.270 474 56 24 21 458 629388311 629388773 1.420000e-65 261.0
14 TraesCS2A01G553600 chr2D 80.357 336 31 20 47 351 629391308 629391639 6.700000e-54 222.0
15 TraesCS2A01G553600 chr3B 81.747 1282 179 34 1164 2442 53556272 53555043 0.000000e+00 1020.0
16 TraesCS2A01G553600 chr3B 77.472 617 105 25 3699 4293 53554231 53553627 6.380000e-89 339.0
17 TraesCS2A01G553600 chr3A 82.580 1217 155 36 1164 2371 44248246 44247078 0.000000e+00 1020.0
18 TraesCS2A01G553600 chr7A 90.693 548 44 4 1785 2332 640641280 640641820 0.000000e+00 723.0
19 TraesCS2A01G553600 chr7A 90.698 172 15 1 1623 1794 640639969 640640139 1.440000e-55 228.0
20 TraesCS2A01G553600 chr7A 94.915 59 2 1 5084 5142 37119350 37119407 1.970000e-14 91.6
21 TraesCS2A01G553600 chr7B 83.705 583 46 19 2520 3093 76453735 76454277 5.940000e-139 505.0
22 TraesCS2A01G553600 chr6D 93.103 58 3 1 5085 5142 382346980 382346924 3.300000e-12 84.2
23 TraesCS2A01G553600 chr1D 92.593 54 3 1 5085 5138 493221758 493221810 5.520000e-10 76.8
24 TraesCS2A01G553600 chr4D 92.308 52 4 0 5083 5134 509336920 509336971 1.990000e-09 75.0
25 TraesCS2A01G553600 chr5D 97.619 42 1 0 5085 5126 450614095 450614136 7.140000e-09 73.1
26 TraesCS2A01G553600 chr5B 93.617 47 2 1 5096 5142 42166326 42166371 9.240000e-08 69.4
27 TraesCS2A01G553600 chr5A 89.474 57 3 2 5084 5137 316001612 316001556 9.240000e-08 69.4
28 TraesCS2A01G553600 chr5A 100.000 28 0 0 4980 5007 253591418 253591391 9.000000e-03 52.8
29 TraesCS2A01G553600 chr1A 90.385 52 5 0 5085 5136 7799030 7798979 9.240000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G553600 chr2A 758949843 758954984 5141 False 9496.00 9496 100.00000 1 5142 1 chr2A.!!$F2 5141
1 TraesCS2A01G553600 chr2B 772213798 772218535 4737 False 1338.75 4665 89.34175 2 5110 4 chr2B.!!$F2 5108
2 TraesCS2A01G553600 chr2D 629388311 629395960 7649 False 1027.40 2383 86.33700 21 4441 5 chr2D.!!$F1 4420
3 TraesCS2A01G553600 chr3B 53553627 53556272 2645 True 679.50 1020 79.60950 1164 4293 2 chr3B.!!$R1 3129
4 TraesCS2A01G553600 chr3A 44247078 44248246 1168 True 1020.00 1020 82.58000 1164 2371 1 chr3A.!!$R1 1207
5 TraesCS2A01G553600 chr7A 640639969 640641820 1851 False 475.50 723 90.69550 1623 2332 2 chr7A.!!$F2 709
6 TraesCS2A01G553600 chr7B 76453735 76454277 542 False 505.00 505 83.70500 2520 3093 1 chr7B.!!$F1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 3905 0.102120 CTCTAGTGCGCTCAGAAGGG 59.898 60.0 9.73 0.16 38.45 3.95 F
1535 4896 0.606604 GTCCTGCGAGTCCTTTACCA 59.393 55.0 0.00 0.00 0.00 3.25 F
2907 7906 0.103208 GCACTAGGATCACCTCACCG 59.897 60.0 0.00 0.00 46.43 4.94 F
3959 9008 0.034337 TACACCGAAGAGGGTTGTGC 59.966 55.0 0.00 0.00 46.96 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2350 6871 0.671251 CCTCGAGGTAGATGTCCAGC 59.329 60.000 24.04 0.0 0.00 4.85 R
3148 8164 0.746204 TTGTTGCGAGTGCTGGTTCA 60.746 50.000 0.00 0.0 43.34 3.18 R
3964 9013 0.097325 CCTTCTCCTTCTCGTCGTCG 59.903 60.000 0.00 0.0 38.55 5.12 R
4960 10028 1.826720 TGAATGGGGGTAGTACGTGTC 59.173 52.381 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.308866 GTGTAATGTAATCCGGTGTCTGC 59.691 47.826 0.00 0.00 0.00 4.26
116 117 4.782019 TGTGACAAACCAGGCATAATTC 57.218 40.909 0.00 0.00 0.00 2.17
117 118 3.190327 TGTGACAAACCAGGCATAATTCG 59.810 43.478 0.00 0.00 0.00 3.34
128 129 2.478879 GGCATAATTCGGGTTTTGGACG 60.479 50.000 0.00 0.00 0.00 4.79
136 138 1.595093 GGGTTTTGGACGAGCATGGG 61.595 60.000 0.00 0.00 0.00 4.00
140 142 1.488705 TTTGGACGAGCATGGGGACT 61.489 55.000 0.00 0.00 0.00 3.85
205 209 1.516603 GGCGAGTCTAACACGGAGC 60.517 63.158 0.00 0.00 32.89 4.70
206 210 1.868251 GCGAGTCTAACACGGAGCG 60.868 63.158 0.00 0.00 32.89 5.03
223 230 1.065782 AGCGGTGCCATGTTATGTACA 60.066 47.619 0.00 0.00 41.97 2.90
256 263 1.153549 CCGCAGTACAGGCTTCTCC 60.154 63.158 7.76 0.00 0.00 3.71
322 626 1.945394 GCATGTCTGGCCAGATTAGTG 59.055 52.381 37.07 29.07 39.97 2.74
323 627 2.569059 CATGTCTGGCCAGATTAGTGG 58.431 52.381 37.07 19.43 39.97 4.00
324 628 1.656587 TGTCTGGCCAGATTAGTGGT 58.343 50.000 37.07 0.00 40.09 4.16
326 630 2.766263 TGTCTGGCCAGATTAGTGGTAG 59.234 50.000 37.07 6.28 40.09 3.18
327 631 3.031736 GTCTGGCCAGATTAGTGGTAGA 58.968 50.000 37.07 8.87 40.09 2.59
328 632 3.451178 GTCTGGCCAGATTAGTGGTAGAA 59.549 47.826 37.07 8.37 40.09 2.10
329 633 4.081087 GTCTGGCCAGATTAGTGGTAGAAA 60.081 45.833 37.07 7.88 40.09 2.52
330 634 4.534500 TCTGGCCAGATTAGTGGTAGAAAA 59.466 41.667 32.00 3.16 40.09 2.29
331 635 4.843728 TGGCCAGATTAGTGGTAGAAAAG 58.156 43.478 0.00 0.00 40.09 2.27
347 651 1.240256 AAAGTTATGAACCGGCGCAA 58.760 45.000 10.83 0.00 0.00 4.85
351 687 0.742990 TTATGAACCGGCGCAAGAGG 60.743 55.000 10.83 9.43 41.54 3.69
458 802 0.960364 GCCCACGCAGATCCTGAAAA 60.960 55.000 0.00 0.00 32.44 2.29
459 803 1.755179 CCCACGCAGATCCTGAAAAT 58.245 50.000 0.00 0.00 32.44 1.82
460 804 2.094675 CCCACGCAGATCCTGAAAATT 58.905 47.619 0.00 0.00 32.44 1.82
461 805 3.278574 CCCACGCAGATCCTGAAAATTA 58.721 45.455 0.00 0.00 32.44 1.40
462 806 3.065371 CCCACGCAGATCCTGAAAATTAC 59.935 47.826 0.00 0.00 32.44 1.89
464 808 4.396166 CCACGCAGATCCTGAAAATTACTT 59.604 41.667 0.00 0.00 32.44 2.24
465 809 5.327091 CACGCAGATCCTGAAAATTACTTG 58.673 41.667 0.00 0.00 32.44 3.16
466 810 5.003804 ACGCAGATCCTGAAAATTACTTGT 58.996 37.500 0.00 0.00 32.44 3.16
467 811 5.122396 ACGCAGATCCTGAAAATTACTTGTC 59.878 40.000 0.00 0.00 32.44 3.18
469 813 6.348458 CGCAGATCCTGAAAATTACTTGTCAA 60.348 38.462 0.00 0.00 32.44 3.18
470 814 7.025963 GCAGATCCTGAAAATTACTTGTCAAG 58.974 38.462 11.17 11.17 32.44 3.02
471 815 7.308830 GCAGATCCTGAAAATTACTTGTCAAGT 60.309 37.037 21.48 21.48 38.42 3.16
472 816 9.219603 CAGATCCTGAAAATTACTTGTCAAGTA 57.780 33.333 19.42 19.42 36.97 2.24
483 827 5.924475 ACTTGTCAAGTAAATCAGAACGG 57.076 39.130 16.74 0.00 40.69 4.44
484 828 5.607477 ACTTGTCAAGTAAATCAGAACGGA 58.393 37.500 16.74 0.00 40.69 4.69
485 829 5.696724 ACTTGTCAAGTAAATCAGAACGGAG 59.303 40.000 16.74 0.00 40.69 4.63
486 830 5.462530 TGTCAAGTAAATCAGAACGGAGA 57.537 39.130 0.00 0.00 0.00 3.71
487 831 5.470368 TGTCAAGTAAATCAGAACGGAGAG 58.530 41.667 0.00 0.00 0.00 3.20
488 832 5.243060 TGTCAAGTAAATCAGAACGGAGAGA 59.757 40.000 0.00 0.00 0.00 3.10
489 833 5.802956 GTCAAGTAAATCAGAACGGAGAGAG 59.197 44.000 0.00 0.00 0.00 3.20
607 3879 2.107378 TGCTCTGGGGTGACATTTTGTA 59.893 45.455 0.00 0.00 0.00 2.41
608 3880 3.245229 TGCTCTGGGGTGACATTTTGTAT 60.245 43.478 0.00 0.00 0.00 2.29
633 3905 0.102120 CTCTAGTGCGCTCAGAAGGG 59.898 60.000 9.73 0.16 38.45 3.95
668 3940 7.974504 TCTTATCCCCTCAATCAATTACTACC 58.025 38.462 0.00 0.00 0.00 3.18
690 3962 3.176411 TCAATCACCACCACTCTGATCT 58.824 45.455 0.00 0.00 0.00 2.75
691 3963 3.196469 TCAATCACCACCACTCTGATCTC 59.804 47.826 0.00 0.00 0.00 2.75
692 3964 2.612285 TCACCACCACTCTGATCTCT 57.388 50.000 0.00 0.00 0.00 3.10
693 3965 2.174360 TCACCACCACTCTGATCTCTG 58.826 52.381 0.00 0.00 0.00 3.35
694 3966 2.174360 CACCACCACTCTGATCTCTGA 58.826 52.381 0.00 0.00 0.00 3.27
695 3967 2.765135 CACCACCACTCTGATCTCTGAT 59.235 50.000 0.00 0.00 0.00 2.90
696 3968 3.030291 ACCACCACTCTGATCTCTGATC 58.970 50.000 0.00 0.98 0.00 2.92
697 3969 3.298619 CCACCACTCTGATCTCTGATCT 58.701 50.000 8.71 0.00 0.00 2.75
698 3970 3.318839 CCACCACTCTGATCTCTGATCTC 59.681 52.174 8.71 0.00 0.00 2.75
744 4024 4.363999 CGGCACTATAAAGAGTTCAGAGG 58.636 47.826 0.00 0.00 0.00 3.69
786 4066 1.915952 AACGCCGGTTTGTTTTCTTG 58.084 45.000 1.90 0.00 30.42 3.02
865 4201 1.068083 CTGTGTGCCTGTGACTCGT 59.932 57.895 0.00 0.00 0.00 4.18
878 4214 1.813178 TGACTCGTAGCTGAACTGAGG 59.187 52.381 0.00 0.00 0.00 3.86
914 4250 0.610687 CCCTCGCCTCCCAAGATATC 59.389 60.000 0.00 0.00 0.00 1.63
932 4271 1.334160 TCTTGTACCGCTCCACTTCA 58.666 50.000 0.00 0.00 0.00 3.02
973 4312 1.816074 GTCCGTTGCTTCCATTGGTA 58.184 50.000 1.86 0.00 0.00 3.25
979 4318 3.317150 GTTGCTTCCATTGGTAGTTTGC 58.683 45.455 10.61 4.83 0.00 3.68
1008 4354 1.805945 GTCGAGCACCATGGACGAC 60.806 63.158 26.87 26.87 44.19 4.34
1066 4412 1.501582 GCTCCTTCTCCACCAGGTAT 58.498 55.000 0.00 0.00 35.89 2.73
1067 4413 2.679082 GCTCCTTCTCCACCAGGTATA 58.321 52.381 0.00 0.00 35.89 1.47
1068 4414 2.365941 GCTCCTTCTCCACCAGGTATAC 59.634 54.545 0.00 0.00 35.89 1.47
1093 4443 1.060553 GCGTCGCATCGATCAAGAAAA 59.939 47.619 13.44 0.00 38.42 2.29
1098 4448 3.684305 TCGCATCGATCAAGAAAACATGT 59.316 39.130 0.00 0.00 0.00 3.21
1099 4449 4.024438 CGCATCGATCAAGAAAACATGTC 58.976 43.478 0.00 0.00 0.00 3.06
1100 4450 4.201753 CGCATCGATCAAGAAAACATGTCT 60.202 41.667 0.00 0.00 0.00 3.41
1101 4451 5.261661 GCATCGATCAAGAAAACATGTCTC 58.738 41.667 0.00 0.00 0.00 3.36
1140 4490 3.996150 ATTCTGACTGTTGCAGTTTGG 57.004 42.857 3.16 0.00 45.44 3.28
1239 4597 1.627297 AAGGGGAAGATGACGAGGGC 61.627 60.000 0.00 0.00 0.00 5.19
1277 4638 2.264480 CGGAGGCGTTGATGTCCA 59.736 61.111 0.00 0.00 0.00 4.02
1498 4859 2.363276 TACTGGACGTGGCCCGAT 60.363 61.111 18.74 4.87 40.70 4.18
1532 4893 2.029290 GTCAAGTCCTGCGAGTCCTTTA 60.029 50.000 0.00 0.00 0.00 1.85
1535 4896 0.606604 GTCCTGCGAGTCCTTTACCA 59.393 55.000 0.00 0.00 0.00 3.25
1798 6319 0.807667 CCGTCGAGAAGGCCATGAAG 60.808 60.000 5.01 0.00 0.00 3.02
1889 6410 4.988598 CCGCCACGCTCCACAAGT 62.989 66.667 0.00 0.00 0.00 3.16
2084 6605 4.864334 GGATGCTGGACCAGGCCG 62.864 72.222 23.09 0.00 31.21 6.13
2095 6616 3.933722 CAGGCCGCCCTCGATGAT 61.934 66.667 5.55 0.00 40.33 2.45
2192 6713 4.043100 TGGAGGAGGACGGCTCGA 62.043 66.667 1.50 0.00 0.00 4.04
2350 6871 2.874780 GACGGCGTGTACAGAGCG 60.875 66.667 21.19 8.28 0.00 5.03
2386 6907 5.689068 CCTCGAGGTAACATTAATAACCGTC 59.311 44.000 24.04 6.03 37.09 4.79
2389 6910 6.319658 TCGAGGTAACATTAATAACCGTCTCT 59.680 38.462 7.71 0.00 37.09 3.10
2391 6912 7.167136 CGAGGTAACATTAATAACCGTCTCTTC 59.833 40.741 7.71 1.03 37.09 2.87
2392 6913 6.976925 AGGTAACATTAATAACCGTCTCTTCG 59.023 38.462 7.71 0.00 37.09 3.79
2408 6930 4.937620 TCTCTTCGATTCTCAAATGTTGGG 59.062 41.667 0.00 0.00 0.00 4.12
2443 6965 7.542025 AGGAAAATTCGATTCAGATTTCAAGG 58.458 34.615 0.11 0.00 0.00 3.61
2448 7009 9.933723 AAATTCGATTCAGATTTCAAGGAAAAT 57.066 25.926 0.00 0.00 35.11 1.82
2465 7026 8.556194 CAAGGAAAATAAATTCGGATCATACGA 58.444 33.333 0.00 0.00 38.78 3.43
2474 7035 2.552743 TCGGATCATACGAGGTCATGAC 59.447 50.000 17.91 17.91 34.15 3.06
2478 7039 4.321304 GGATCATACGAGGTCATGACGATT 60.321 45.833 19.33 7.74 34.15 3.34
2482 7043 3.438297 ACGAGGTCATGACGATTTAGG 57.562 47.619 19.33 6.89 0.00 2.69
2483 7044 3.021695 ACGAGGTCATGACGATTTAGGA 58.978 45.455 19.33 0.00 0.00 2.94
2484 7045 3.181489 ACGAGGTCATGACGATTTAGGAC 60.181 47.826 19.33 2.49 0.00 3.85
2485 7046 3.181490 CGAGGTCATGACGATTTAGGACA 60.181 47.826 19.33 0.00 29.82 4.02
2486 7047 4.499865 CGAGGTCATGACGATTTAGGACAT 60.500 45.833 19.33 0.00 29.82 3.06
2518 7079 3.951663 CGGGAGGTTAAGAGGTTTGATT 58.048 45.455 0.00 0.00 0.00 2.57
2565 7126 7.338800 AGGCCAATCATGAACATTTTAGTAG 57.661 36.000 5.01 0.00 0.00 2.57
2566 7127 6.891908 AGGCCAATCATGAACATTTTAGTAGT 59.108 34.615 5.01 0.00 0.00 2.73
2567 7128 8.052748 AGGCCAATCATGAACATTTTAGTAGTA 58.947 33.333 5.01 0.00 0.00 1.82
2568 7129 8.129211 GGCCAATCATGAACATTTTAGTAGTAC 58.871 37.037 0.00 0.00 0.00 2.73
2569 7130 7.850982 GCCAATCATGAACATTTTAGTAGTACG 59.149 37.037 0.00 0.00 0.00 3.67
2585 7146 3.296854 AGTACGGTATTCTCTGCCATGA 58.703 45.455 0.00 0.00 0.00 3.07
2603 7165 1.879380 TGACAGTGCATTTTTCCTCCG 59.121 47.619 0.00 0.00 0.00 4.63
2623 7185 3.028921 GCTGGTCAGAGAGGGCAGG 62.029 68.421 1.65 0.00 0.00 4.85
2626 7188 2.267324 GTCAGAGAGGGCAGGCAC 59.733 66.667 0.00 0.00 0.00 5.01
2627 7189 2.121385 TCAGAGAGGGCAGGCACT 59.879 61.111 0.00 0.00 43.88 4.40
2670 7232 3.942796 GCACTGTGCACATTCACAA 57.057 47.368 26.70 0.00 45.22 3.33
2712 7274 3.076621 TGCAGGTTATGAGAGCTGTTTG 58.923 45.455 0.00 0.00 44.74 2.93
2727 7468 4.752101 AGCTGTTTGTGACTAAGTTGCTAG 59.248 41.667 0.00 0.00 0.00 3.42
2768 7510 9.736023 ATTTGTTACAGAAAATGAAGAGAACAC 57.264 29.630 0.00 0.00 0.00 3.32
2775 7518 6.690098 CAGAAAATGAAGAGAACACAACACTG 59.310 38.462 0.00 0.00 0.00 3.66
2850 7691 3.752222 AGTCGATGGTATTAGCTACTCGG 59.248 47.826 0.00 0.00 32.05 4.63
2857 7837 3.255395 GGTATTAGCTACTCGGGGTCTTC 59.745 52.174 0.00 0.00 0.00 2.87
2867 7866 1.172180 CGGGGTCTTCTGCAAAGCAA 61.172 55.000 0.00 0.00 38.41 3.91
2868 7867 1.260544 GGGGTCTTCTGCAAAGCAAT 58.739 50.000 0.00 0.00 38.41 3.56
2872 7871 2.159599 GGTCTTCTGCAAAGCAATCGAG 60.160 50.000 0.00 0.00 38.41 4.04
2894 7893 3.601443 AGAGTTTGGTAGCAGCACTAG 57.399 47.619 8.41 0.00 0.00 2.57
2904 7903 0.826715 GCAGCACTAGGATCACCTCA 59.173 55.000 0.00 0.00 46.43 3.86
2907 7906 0.103208 GCACTAGGATCACCTCACCG 59.897 60.000 0.00 0.00 46.43 4.94
2926 7925 2.028658 CCGTGGGATGATAGTGATGGAG 60.029 54.545 0.00 0.00 0.00 3.86
2943 7942 0.171455 GAGAGGTGGAGTGTGTAGCG 59.829 60.000 0.00 0.00 0.00 4.26
2969 7968 2.571202 TGTGTCATGGAGTATGGAAGCA 59.429 45.455 0.00 0.00 37.39 3.91
3015 8015 1.194121 GCCCTTTTTGGCCCATCAGT 61.194 55.000 0.00 0.00 46.11 3.41
3042 8042 2.029290 TCTCGAAACCTTGTCAGTAGCC 60.029 50.000 0.00 0.00 0.00 3.93
3093 8098 6.708885 TTATCCATCATGCCTTATCCTCTT 57.291 37.500 0.00 0.00 0.00 2.85
3096 8102 3.819337 CCATCATGCCTTATCCTCTTGTG 59.181 47.826 0.00 0.00 0.00 3.33
3100 8106 2.923121 TGCCTTATCCTCTTGTGCATC 58.077 47.619 0.00 0.00 0.00 3.91
3160 8189 2.036475 TCAAGACTCTGAACCAGCACTC 59.964 50.000 0.00 0.00 0.00 3.51
3183 8212 3.315191 GCAACAACTCTGAACTTTGGCTA 59.685 43.478 0.00 0.00 0.00 3.93
3196 8225 3.005791 ACTTTGGCTATGCTTTCACCAAC 59.994 43.478 0.00 0.00 39.99 3.77
3206 8239 3.181505 TGCTTTCACCAACTTACAACACG 60.182 43.478 0.00 0.00 0.00 4.49
3266 8300 7.149569 TCTTTTACTGAGCTCCAATCATTTG 57.850 36.000 12.15 0.00 0.00 2.32
3296 8330 6.837992 TGAGATTTCGCCTTTGTGTTATTAC 58.162 36.000 0.00 0.00 0.00 1.89
3303 8337 4.394920 CGCCTTTGTGTTATTACTGGTGAT 59.605 41.667 0.00 0.00 0.00 3.06
3304 8338 5.583061 CGCCTTTGTGTTATTACTGGTGATA 59.417 40.000 0.00 0.00 0.00 2.15
3305 8339 6.238103 CGCCTTTGTGTTATTACTGGTGATAG 60.238 42.308 0.00 0.00 0.00 2.08
3394 8428 6.536941 GTGCTTCCTATGTCTTCTTCCTTTAG 59.463 42.308 0.00 0.00 0.00 1.85
3411 8445 4.567116 CCTTTAGTTAACCACCTTCCTCCC 60.567 50.000 0.88 0.00 0.00 4.30
3521 8555 3.616821 TCTGTTCATCAAACGCCGATAAG 59.383 43.478 0.00 0.00 41.02 1.73
3527 8561 4.214545 TCATCAAACGCCGATAAGTTTTGT 59.785 37.500 0.00 0.00 38.37 2.83
3528 8562 5.408909 TCATCAAACGCCGATAAGTTTTGTA 59.591 36.000 0.00 0.00 38.37 2.41
3559 8593 2.919229 AGTTACCGAATTTGACGTAGCG 59.081 45.455 0.00 0.00 0.00 4.26
3572 8610 4.847633 TGACGTAGCGTATGTAATGTACC 58.152 43.478 0.00 0.00 41.37 3.34
3627 8665 8.353423 ACCTAGAAACATTTTATGACTGCAAT 57.647 30.769 0.00 0.00 0.00 3.56
3678 8724 5.828299 TGACAAAGAAAACAACGGAAGAT 57.172 34.783 0.00 0.00 0.00 2.40
3712 8758 7.870509 ACAACTGCATCATTGTATATCTTGT 57.129 32.000 8.85 0.00 37.27 3.16
3713 8759 8.284945 ACAACTGCATCATTGTATATCTTGTT 57.715 30.769 8.85 0.00 37.27 2.83
3727 8776 4.974368 ATCTTGTTACGGAGAGAGAGTG 57.026 45.455 0.00 0.00 0.00 3.51
3821 8870 1.272769 GGTGCCTCAACTACGAGAAGT 59.727 52.381 0.00 0.00 34.79 3.01
3919 8968 3.061848 CGGCCACCCAATTCGCTT 61.062 61.111 2.24 0.00 0.00 4.68
3950 8999 1.672030 TCGTCGCCTACACCGAAGA 60.672 57.895 0.00 0.00 40.01 2.87
3959 9008 0.034337 TACACCGAAGAGGGTTGTGC 59.966 55.000 0.00 0.00 46.96 4.57
3962 9011 2.742372 CGAAGAGGGTTGTGCCGG 60.742 66.667 0.00 0.00 38.44 6.13
3963 9012 2.747686 GAAGAGGGTTGTGCCGGA 59.252 61.111 5.05 0.00 38.44 5.14
3964 9013 1.671379 GAAGAGGGTTGTGCCGGAC 60.671 63.158 5.05 0.46 38.44 4.79
3967 9016 4.309950 AGGGTTGTGCCGGACGAC 62.310 66.667 5.05 10.70 38.16 4.34
3989 9038 3.020984 GACGAGAAGGAGAAGGAGACAT 58.979 50.000 0.00 0.00 0.00 3.06
3997 9046 3.034635 GGAGAAGGAGACATTGAGGCTA 58.965 50.000 0.00 0.00 33.72 3.93
4064 9113 3.192212 GTGCAAAGAAATGAGAGGGAAGG 59.808 47.826 0.00 0.00 0.00 3.46
4177 9232 5.104569 TGGAAAAATTGAGCAAGGTTTCCTT 60.105 36.000 25.17 0.00 45.88 3.36
4219 9285 3.199727 GCCTCTTTTCTCCCTCTTGATCT 59.800 47.826 0.00 0.00 0.00 2.75
4237 9305 9.921637 TCTTGATCTTTTTGTACAGTTGTTTTT 57.078 25.926 0.00 0.00 0.00 1.94
4261 9329 4.495184 GCTGCATTGATATTTTTGGCTTGC 60.495 41.667 0.00 0.00 0.00 4.01
4295 9363 1.374252 GATTGTGAGTGACGCGGGT 60.374 57.895 12.47 4.12 0.00 5.28
4309 9377 4.756135 TGACGCGGGTTATACTTTCTTTTT 59.244 37.500 12.47 0.00 0.00 1.94
4384 9452 9.471084 TTCGGAAAATCAAAGTTTATTTTCTCC 57.529 29.630 23.91 16.75 45.24 3.71
4395 9463 9.898152 AAAGTTTATTTTCTCCAACAAAATCCA 57.102 25.926 0.00 0.00 35.52 3.41
4396 9464 9.898152 AAGTTTATTTTCTCCAACAAAATCCAA 57.102 25.926 0.00 0.00 35.52 3.53
4397 9465 9.898152 AGTTTATTTTCTCCAACAAAATCCAAA 57.102 25.926 0.00 0.00 35.52 3.28
4429 9497 8.911918 TTACAGTATATGTTGTGAAGTTTGGT 57.088 30.769 4.67 0.00 39.96 3.67
4448 9516 9.581099 AGTTTGGTTTTTGAATTATATTAGCCG 57.419 29.630 0.00 0.00 0.00 5.52
4449 9517 9.575783 GTTTGGTTTTTGAATTATATTAGCCGA 57.424 29.630 0.00 0.00 0.00 5.54
4462 9530 9.836864 ATTATATTAGCCGATTTATGCATCAGA 57.163 29.630 0.19 0.00 0.00 3.27
4463 9531 9.836864 TTATATTAGCCGATTTATGCATCAGAT 57.163 29.630 0.19 0.00 0.00 2.90
4464 9532 5.868043 TTAGCCGATTTATGCATCAGATG 57.132 39.130 0.19 5.98 0.00 2.90
4465 9533 3.748083 AGCCGATTTATGCATCAGATGT 58.252 40.909 12.18 0.00 0.00 3.06
4466 9534 4.139786 AGCCGATTTATGCATCAGATGTT 58.860 39.130 12.18 3.11 0.00 2.71
4467 9535 4.214971 AGCCGATTTATGCATCAGATGTTC 59.785 41.667 12.18 0.00 0.00 3.18
4468 9536 4.214971 GCCGATTTATGCATCAGATGTTCT 59.785 41.667 12.18 0.22 0.00 3.01
4469 9537 5.409520 GCCGATTTATGCATCAGATGTTCTA 59.590 40.000 12.18 0.00 0.00 2.10
4470 9538 6.073058 GCCGATTTATGCATCAGATGTTCTAA 60.073 38.462 12.18 5.13 0.00 2.10
4471 9539 7.293745 CCGATTTATGCATCAGATGTTCTAAC 58.706 38.462 12.18 0.00 0.00 2.34
4472 9540 7.041848 CCGATTTATGCATCAGATGTTCTAACA 60.042 37.037 12.18 0.00 44.06 2.41
4473 9541 8.337532 CGATTTATGCATCAGATGTTCTAACAA 58.662 33.333 12.18 0.00 43.03 2.83
4478 9546 7.320443 TGCATCAGATGTTCTAACAATTACC 57.680 36.000 12.18 0.00 43.03 2.85
4479 9547 6.883756 TGCATCAGATGTTCTAACAATTACCA 59.116 34.615 12.18 0.00 43.03 3.25
4480 9548 7.557358 TGCATCAGATGTTCTAACAATTACCAT 59.443 33.333 12.18 0.00 43.03 3.55
4481 9549 9.056005 GCATCAGATGTTCTAACAATTACCATA 57.944 33.333 12.18 0.00 43.03 2.74
4534 9602 8.651391 TTAATCGAAACTAGACTTGAACAACA 57.349 30.769 0.00 0.00 0.00 3.33
4535 9603 7.730364 AATCGAAACTAGACTTGAACAACAT 57.270 32.000 0.00 0.00 0.00 2.71
4536 9604 6.525121 TCGAAACTAGACTTGAACAACATG 57.475 37.500 0.00 0.00 0.00 3.21
4537 9605 6.277605 TCGAAACTAGACTTGAACAACATGA 58.722 36.000 0.00 0.00 0.00 3.07
4538 9606 6.929049 TCGAAACTAGACTTGAACAACATGAT 59.071 34.615 0.00 0.00 0.00 2.45
4539 9607 7.011773 CGAAACTAGACTTGAACAACATGATG 58.988 38.462 0.00 0.00 0.00 3.07
4540 9608 7.095649 CGAAACTAGACTTGAACAACATGATGA 60.096 37.037 10.29 0.00 0.00 2.92
4541 9609 7.664082 AACTAGACTTGAACAACATGATGAG 57.336 36.000 10.29 0.00 0.00 2.90
4542 9610 6.169094 ACTAGACTTGAACAACATGATGAGG 58.831 40.000 10.29 0.00 0.00 3.86
4543 9611 4.978099 AGACTTGAACAACATGATGAGGT 58.022 39.130 10.29 0.00 0.00 3.85
4544 9612 5.380043 AGACTTGAACAACATGATGAGGTT 58.620 37.500 10.29 2.71 0.00 3.50
4545 9613 6.533730 AGACTTGAACAACATGATGAGGTTA 58.466 36.000 10.29 0.00 0.00 2.85
4546 9614 6.998074 AGACTTGAACAACATGATGAGGTTAA 59.002 34.615 10.29 0.00 0.00 2.01
4547 9615 7.502226 AGACTTGAACAACATGATGAGGTTAAA 59.498 33.333 10.29 1.93 0.00 1.52
4548 9616 7.651808 ACTTGAACAACATGATGAGGTTAAAG 58.348 34.615 19.70 19.70 34.59 1.85
4549 9617 6.573664 TGAACAACATGATGAGGTTAAAGG 57.426 37.500 10.29 0.00 0.00 3.11
4550 9618 5.048083 TGAACAACATGATGAGGTTAAAGGC 60.048 40.000 10.29 0.00 0.00 4.35
4551 9619 3.763897 ACAACATGATGAGGTTAAAGGCC 59.236 43.478 10.29 0.00 0.00 5.19
4552 9620 3.737559 ACATGATGAGGTTAAAGGCCA 57.262 42.857 5.01 0.00 0.00 5.36
4553 9621 3.624777 ACATGATGAGGTTAAAGGCCAG 58.375 45.455 5.01 0.00 0.00 4.85
4554 9622 2.128771 TGATGAGGTTAAAGGCCAGC 57.871 50.000 5.01 0.00 0.00 4.85
4555 9623 1.354031 TGATGAGGTTAAAGGCCAGCA 59.646 47.619 5.01 0.00 0.00 4.41
4556 9624 2.025037 TGATGAGGTTAAAGGCCAGCAT 60.025 45.455 5.01 0.00 0.00 3.79
4557 9625 3.201930 TGATGAGGTTAAAGGCCAGCATA 59.798 43.478 5.01 0.00 0.00 3.14
4558 9626 3.951563 TGAGGTTAAAGGCCAGCATAT 57.048 42.857 5.01 0.00 0.00 1.78
4559 9627 3.554934 TGAGGTTAAAGGCCAGCATATG 58.445 45.455 5.01 0.00 0.00 1.78
4560 9628 3.053693 TGAGGTTAAAGGCCAGCATATGT 60.054 43.478 5.01 0.00 0.00 2.29
4561 9629 3.555966 AGGTTAAAGGCCAGCATATGTC 58.444 45.455 5.01 0.00 0.00 3.06
4562 9630 2.290641 GGTTAAAGGCCAGCATATGTCG 59.709 50.000 5.01 0.00 0.00 4.35
4563 9631 2.254546 TAAAGGCCAGCATATGTCGG 57.745 50.000 5.01 6.39 0.00 4.79
4564 9632 0.255890 AAAGGCCAGCATATGTCGGT 59.744 50.000 5.01 0.00 0.00 4.69
4565 9633 1.128200 AAGGCCAGCATATGTCGGTA 58.872 50.000 5.01 0.00 0.00 4.02
4566 9634 0.393077 AGGCCAGCATATGTCGGTAC 59.607 55.000 5.01 3.55 0.00 3.34
4567 9635 0.602905 GGCCAGCATATGTCGGTACC 60.603 60.000 0.16 0.16 0.00 3.34
4568 9636 0.105964 GCCAGCATATGTCGGTACCA 59.894 55.000 13.54 0.00 0.00 3.25
4569 9637 1.865865 CCAGCATATGTCGGTACCAC 58.134 55.000 13.54 9.89 0.00 4.16
4570 9638 1.138069 CCAGCATATGTCGGTACCACA 59.862 52.381 13.54 15.20 0.00 4.17
4571 9639 2.224281 CCAGCATATGTCGGTACCACAT 60.224 50.000 24.15 24.15 38.13 3.21
4572 9640 3.059884 CAGCATATGTCGGTACCACATC 58.940 50.000 24.32 15.07 35.95 3.06
4573 9641 2.698274 AGCATATGTCGGTACCACATCA 59.302 45.455 24.32 13.15 35.95 3.07
4574 9642 3.324846 AGCATATGTCGGTACCACATCAT 59.675 43.478 24.32 17.72 35.95 2.45
4575 9643 4.526650 AGCATATGTCGGTACCACATCATA 59.473 41.667 24.32 18.87 35.95 2.15
4576 9644 4.864806 GCATATGTCGGTACCACATCATAG 59.135 45.833 24.32 16.54 35.95 2.23
4577 9645 2.882927 TGTCGGTACCACATCATAGC 57.117 50.000 13.54 0.00 0.00 2.97
4578 9646 1.066454 TGTCGGTACCACATCATAGCG 59.934 52.381 13.54 0.00 42.21 4.26
4579 9647 1.066605 GTCGGTACCACATCATAGCGT 59.933 52.381 13.54 0.00 41.70 5.07
4580 9648 1.335810 TCGGTACCACATCATAGCGTC 59.664 52.381 13.54 0.00 41.70 5.19
4581 9649 1.337071 CGGTACCACATCATAGCGTCT 59.663 52.381 13.54 0.00 37.48 4.18
4582 9650 2.604855 CGGTACCACATCATAGCGTCTC 60.605 54.545 13.54 0.00 37.48 3.36
4583 9651 2.623889 GGTACCACATCATAGCGTCTCT 59.376 50.000 7.15 0.00 0.00 3.10
4584 9652 3.819337 GGTACCACATCATAGCGTCTCTA 59.181 47.826 7.15 0.00 0.00 2.43
4585 9653 4.459685 GGTACCACATCATAGCGTCTCTAT 59.540 45.833 7.15 0.00 38.50 1.98
4600 9668 8.764524 AGCGTCTCTATGTTGATTTATATTCC 57.235 34.615 0.00 0.00 0.00 3.01
4601 9669 8.367911 AGCGTCTCTATGTTGATTTATATTCCA 58.632 33.333 0.00 0.00 0.00 3.53
4602 9670 8.988934 GCGTCTCTATGTTGATTTATATTCCAA 58.011 33.333 0.00 0.00 0.00 3.53
4621 9689 6.693315 TCCAAAAACGATTGAATAGGATCC 57.307 37.500 2.48 2.48 31.84 3.36
4622 9690 6.423182 TCCAAAAACGATTGAATAGGATCCT 58.577 36.000 20.48 20.48 31.84 3.24
4623 9691 6.889722 TCCAAAAACGATTGAATAGGATCCTT 59.110 34.615 22.03 1.57 31.84 3.36
4624 9692 8.050325 TCCAAAAACGATTGAATAGGATCCTTA 58.950 33.333 22.03 6.48 31.84 2.69
4625 9693 8.345565 CCAAAAACGATTGAATAGGATCCTTAG 58.654 37.037 22.03 3.35 31.84 2.18
4626 9694 7.497925 AAAACGATTGAATAGGATCCTTAGC 57.502 36.000 22.03 9.91 0.00 3.09
4627 9695 5.808366 ACGATTGAATAGGATCCTTAGCA 57.192 39.130 22.03 12.53 0.00 3.49
4628 9696 6.174720 ACGATTGAATAGGATCCTTAGCAA 57.825 37.500 22.03 20.08 0.00 3.91
4629 9697 6.591935 ACGATTGAATAGGATCCTTAGCAAA 58.408 36.000 22.03 9.14 0.00 3.68
4630 9698 6.483640 ACGATTGAATAGGATCCTTAGCAAAC 59.516 38.462 22.03 17.21 0.00 2.93
4631 9699 6.483307 CGATTGAATAGGATCCTTAGCAAACA 59.517 38.462 22.03 8.28 0.00 2.83
4632 9700 7.012327 CGATTGAATAGGATCCTTAGCAAACAA 59.988 37.037 22.03 15.84 0.00 2.83
4633 9701 7.630242 TTGAATAGGATCCTTAGCAAACAAG 57.370 36.000 22.03 0.00 0.00 3.16
4634 9702 6.957631 TGAATAGGATCCTTAGCAAACAAGA 58.042 36.000 22.03 0.00 0.00 3.02
4635 9703 7.402054 TGAATAGGATCCTTAGCAAACAAGAA 58.598 34.615 22.03 0.00 0.00 2.52
4636 9704 7.888021 TGAATAGGATCCTTAGCAAACAAGAAA 59.112 33.333 22.03 0.00 0.00 2.52
4637 9705 8.650143 AATAGGATCCTTAGCAAACAAGAAAA 57.350 30.769 22.03 0.00 0.00 2.29
4638 9706 8.829373 ATAGGATCCTTAGCAAACAAGAAAAT 57.171 30.769 22.03 0.00 0.00 1.82
4639 9707 9.920946 ATAGGATCCTTAGCAAACAAGAAAATA 57.079 29.630 22.03 0.00 0.00 1.40
4640 9708 8.286191 AGGATCCTTAGCAAACAAGAAAATAG 57.714 34.615 9.02 0.00 0.00 1.73
4641 9709 7.890655 AGGATCCTTAGCAAACAAGAAAATAGT 59.109 33.333 9.02 0.00 0.00 2.12
4642 9710 8.523658 GGATCCTTAGCAAACAAGAAAATAGTT 58.476 33.333 3.84 0.00 0.00 2.24
4643 9711 9.346725 GATCCTTAGCAAACAAGAAAATAGTTG 57.653 33.333 0.00 0.00 0.00 3.16
4644 9712 8.232913 TCCTTAGCAAACAAGAAAATAGTTGT 57.767 30.769 0.00 0.00 38.56 3.32
4645 9713 8.691797 TCCTTAGCAAACAAGAAAATAGTTGTT 58.308 29.630 0.00 0.00 46.42 2.83
4677 9745 9.590451 AATTGAATTTTATGTGGTAAGCATCTG 57.410 29.630 0.00 0.00 0.00 2.90
4678 9746 6.563422 TGAATTTTATGTGGTAAGCATCTGC 58.437 36.000 0.00 0.00 42.49 4.26
4679 9747 4.981806 TTTTATGTGGTAAGCATCTGCC 57.018 40.909 0.00 0.00 43.38 4.85
4680 9748 3.931907 TTATGTGGTAAGCATCTGCCT 57.068 42.857 0.00 0.00 43.38 4.75
4681 9749 5.366482 TTTATGTGGTAAGCATCTGCCTA 57.634 39.130 0.00 0.00 43.38 3.93
4682 9750 5.567037 TTATGTGGTAAGCATCTGCCTAT 57.433 39.130 0.00 0.00 43.38 2.57
4683 9751 6.680148 TTATGTGGTAAGCATCTGCCTATA 57.320 37.500 0.00 0.00 43.38 1.31
4684 9752 5.768980 ATGTGGTAAGCATCTGCCTATAT 57.231 39.130 0.00 0.00 43.38 0.86
4685 9753 6.874278 ATGTGGTAAGCATCTGCCTATATA 57.126 37.500 0.00 0.00 43.38 0.86
4686 9754 6.874278 TGTGGTAAGCATCTGCCTATATAT 57.126 37.500 0.00 0.00 43.38 0.86
4687 9755 6.878317 TGTGGTAAGCATCTGCCTATATATC 58.122 40.000 0.00 0.00 43.38 1.63
4688 9756 6.440328 TGTGGTAAGCATCTGCCTATATATCA 59.560 38.462 0.00 0.00 43.38 2.15
4689 9757 7.038373 TGTGGTAAGCATCTGCCTATATATCAA 60.038 37.037 0.00 0.00 43.38 2.57
4690 9758 7.824289 GTGGTAAGCATCTGCCTATATATCAAA 59.176 37.037 0.00 0.00 43.38 2.69
4691 9759 7.824289 TGGTAAGCATCTGCCTATATATCAAAC 59.176 37.037 0.00 0.00 43.38 2.93
4692 9760 7.824289 GGTAAGCATCTGCCTATATATCAAACA 59.176 37.037 0.00 0.00 43.38 2.83
4693 9761 9.219603 GTAAGCATCTGCCTATATATCAAACAA 57.780 33.333 0.00 0.00 43.38 2.83
4694 9762 8.874744 AAGCATCTGCCTATATATCAAACAAT 57.125 30.769 0.00 0.00 43.38 2.71
4695 9763 9.964354 AAGCATCTGCCTATATATCAAACAATA 57.036 29.630 0.00 0.00 43.38 1.90
4696 9764 9.388506 AGCATCTGCCTATATATCAAACAATAC 57.611 33.333 0.00 0.00 43.38 1.89
4697 9765 9.166173 GCATCTGCCTATATATCAAACAATACA 57.834 33.333 0.00 0.00 34.31 2.29
4713 9781 9.341899 CAAACAATACAATCAAAAGTACTAGGC 57.658 33.333 0.00 0.00 0.00 3.93
4714 9782 8.630054 AACAATACAATCAAAAGTACTAGGCA 57.370 30.769 0.00 0.00 0.00 4.75
4715 9783 8.807948 ACAATACAATCAAAAGTACTAGGCAT 57.192 30.769 0.00 0.00 0.00 4.40
4716 9784 9.899661 ACAATACAATCAAAAGTACTAGGCATA 57.100 29.630 0.00 0.00 0.00 3.14
4745 9813 8.677148 TTTTGAAGGTATATGTCTTATGGCTC 57.323 34.615 0.00 0.00 0.00 4.70
4746 9814 6.994421 TGAAGGTATATGTCTTATGGCTCA 57.006 37.500 0.00 0.00 0.00 4.26
4747 9815 7.559335 TGAAGGTATATGTCTTATGGCTCAT 57.441 36.000 0.00 0.00 0.00 2.90
4748 9816 8.664669 TGAAGGTATATGTCTTATGGCTCATA 57.335 34.615 0.00 0.00 0.00 2.15
4749 9817 8.531982 TGAAGGTATATGTCTTATGGCTCATAC 58.468 37.037 0.00 0.00 0.00 2.39
4750 9818 8.435931 AAGGTATATGTCTTATGGCTCATACA 57.564 34.615 0.00 0.00 0.00 2.29
4751 9819 8.615360 AGGTATATGTCTTATGGCTCATACAT 57.385 34.615 0.00 0.00 29.50 2.29
4752 9820 8.481314 AGGTATATGTCTTATGGCTCATACATG 58.519 37.037 10.11 0.00 27.98 3.21
4753 9821 8.260818 GGTATATGTCTTATGGCTCATACATGT 58.739 37.037 2.69 2.69 27.98 3.21
4756 9824 9.881649 ATATGTCTTATGGCTCATACATGTAAG 57.118 33.333 10.14 5.62 27.98 2.34
4757 9825 7.360113 TGTCTTATGGCTCATACATGTAAGA 57.640 36.000 10.14 10.18 0.00 2.10
4758 9826 7.966812 TGTCTTATGGCTCATACATGTAAGAT 58.033 34.615 10.14 0.00 30.21 2.40
4759 9827 8.432013 TGTCTTATGGCTCATACATGTAAGATT 58.568 33.333 10.14 0.00 30.21 2.40
4760 9828 9.929180 GTCTTATGGCTCATACATGTAAGATTA 57.071 33.333 10.14 1.14 30.21 1.75
4767 9835 9.522804 GGCTCATACATGTAAGATTATAGTAGC 57.477 37.037 10.14 7.74 0.00 3.58
4808 9876 9.632807 TTGAACCAACTTATAACAAATACATGC 57.367 29.630 0.00 0.00 0.00 4.06
4809 9877 8.797438 TGAACCAACTTATAACAAATACATGCA 58.203 29.630 0.00 0.00 0.00 3.96
4810 9878 9.801873 GAACCAACTTATAACAAATACATGCAT 57.198 29.630 0.00 0.00 0.00 3.96
4831 9899 8.909708 TGCATATTGTAGTACTTTTGATTTGC 57.090 30.769 0.00 8.32 0.00 3.68
4832 9900 7.973388 TGCATATTGTAGTACTTTTGATTTGCC 59.027 33.333 0.00 0.00 0.00 4.52
4833 9901 8.190784 GCATATTGTAGTACTTTTGATTTGCCT 58.809 33.333 0.00 0.00 0.00 4.75
4838 9906 9.738832 TTGTAGTACTTTTGATTTGCCTAAAAC 57.261 29.630 0.00 0.00 0.00 2.43
4839 9907 9.127277 TGTAGTACTTTTGATTTGCCTAAAACT 57.873 29.630 0.00 0.00 0.00 2.66
4842 9910 8.793592 AGTACTTTTGATTTGCCTAAAACTAGG 58.206 33.333 0.00 0.00 40.20 3.02
4843 9911 7.833285 ACTTTTGATTTGCCTAAAACTAGGA 57.167 32.000 2.27 0.00 39.60 2.94
4844 9912 8.245195 ACTTTTGATTTGCCTAAAACTAGGAA 57.755 30.769 2.27 0.00 39.60 3.36
4845 9913 8.700973 ACTTTTGATTTGCCTAAAACTAGGAAA 58.299 29.630 2.27 0.00 39.60 3.13
4846 9914 9.541143 CTTTTGATTTGCCTAAAACTAGGAAAA 57.459 29.630 6.78 6.78 46.00 2.29
4920 9988 9.513906 TTTGTGATTATGAGATAACAAGGAACA 57.486 29.630 0.00 0.00 33.13 3.18
4921 9989 9.685276 TTGTGATTATGAGATAACAAGGAACAT 57.315 29.630 0.00 0.00 29.13 2.71
4937 10005 9.686683 ACAAGGAACATATAAGATTTTAGCACT 57.313 29.630 0.00 0.00 0.00 4.40
4944 10012 9.826574 ACATATAAGATTTTAGCACTTTACGGA 57.173 29.630 0.00 0.00 0.00 4.69
4953 10021 9.623000 ATTTTAGCACTTTACGGATTTATAGGT 57.377 29.630 0.00 0.00 0.00 3.08
4954 10022 8.652810 TTTAGCACTTTACGGATTTATAGGTC 57.347 34.615 0.00 0.00 0.00 3.85
4955 10023 6.229936 AGCACTTTACGGATTTATAGGTCA 57.770 37.500 0.00 0.00 0.00 4.02
4956 10024 6.827727 AGCACTTTACGGATTTATAGGTCAT 58.172 36.000 0.00 0.00 0.00 3.06
4957 10025 6.929606 AGCACTTTACGGATTTATAGGTCATC 59.070 38.462 0.00 0.00 0.00 2.92
4958 10026 6.929606 GCACTTTACGGATTTATAGGTCATCT 59.070 38.462 0.00 0.00 0.00 2.90
4959 10027 8.086522 GCACTTTACGGATTTATAGGTCATCTA 58.913 37.037 0.00 0.00 0.00 1.98
4960 10028 9.627395 CACTTTACGGATTTATAGGTCATCTAG 57.373 37.037 0.00 0.00 0.00 2.43
4961 10029 9.584008 ACTTTACGGATTTATAGGTCATCTAGA 57.416 33.333 0.00 0.00 0.00 2.43
4962 10030 9.843334 CTTTACGGATTTATAGGTCATCTAGAC 57.157 37.037 0.00 0.00 46.83 2.59
4973 10041 4.809815 GTCATCTAGACACGTACTACCC 57.190 50.000 0.00 0.00 46.77 3.69
4974 10042 3.563390 GTCATCTAGACACGTACTACCCC 59.437 52.174 0.00 0.00 46.77 4.95
4975 10043 2.717639 TCTAGACACGTACTACCCCC 57.282 55.000 0.00 0.00 0.00 5.40
4976 10044 1.915489 TCTAGACACGTACTACCCCCA 59.085 52.381 0.00 0.00 0.00 4.96
4977 10045 2.511218 TCTAGACACGTACTACCCCCAT 59.489 50.000 0.00 0.00 0.00 4.00
4978 10046 2.242882 AGACACGTACTACCCCCATT 57.757 50.000 0.00 0.00 0.00 3.16
4979 10047 2.105766 AGACACGTACTACCCCCATTC 58.894 52.381 0.00 0.00 0.00 2.67
4980 10048 1.826720 GACACGTACTACCCCCATTCA 59.173 52.381 0.00 0.00 0.00 2.57
4981 10049 2.433239 GACACGTACTACCCCCATTCAT 59.567 50.000 0.00 0.00 0.00 2.57
4982 10050 3.638160 GACACGTACTACCCCCATTCATA 59.362 47.826 0.00 0.00 0.00 2.15
4983 10051 4.032310 ACACGTACTACCCCCATTCATAA 58.968 43.478 0.00 0.00 0.00 1.90
4984 10052 4.657039 ACACGTACTACCCCCATTCATAAT 59.343 41.667 0.00 0.00 0.00 1.28
4985 10053 5.840149 ACACGTACTACCCCCATTCATAATA 59.160 40.000 0.00 0.00 0.00 0.98
4986 10054 6.327104 ACACGTACTACCCCCATTCATAATAA 59.673 38.462 0.00 0.00 0.00 1.40
4987 10055 7.016858 ACACGTACTACCCCCATTCATAATAAT 59.983 37.037 0.00 0.00 0.00 1.28
4988 10056 7.881232 CACGTACTACCCCCATTCATAATAATT 59.119 37.037 0.00 0.00 0.00 1.40
4989 10057 7.881232 ACGTACTACCCCCATTCATAATAATTG 59.119 37.037 0.00 0.00 0.00 2.32
4990 10058 7.881232 CGTACTACCCCCATTCATAATAATTGT 59.119 37.037 0.00 0.00 0.00 2.71
4991 10059 9.227777 GTACTACCCCCATTCATAATAATTGTC 57.772 37.037 0.00 0.00 0.00 3.18
4992 10060 6.940298 ACTACCCCCATTCATAATAATTGTCG 59.060 38.462 0.00 0.00 0.00 4.35
4993 10061 4.522789 ACCCCCATTCATAATAATTGTCGC 59.477 41.667 0.00 0.00 0.00 5.19
4994 10062 4.522405 CCCCCATTCATAATAATTGTCGCA 59.478 41.667 0.00 0.00 0.00 5.10
4995 10063 5.335897 CCCCCATTCATAATAATTGTCGCAG 60.336 44.000 0.00 0.00 0.00 5.18
4996 10064 5.241506 CCCCATTCATAATAATTGTCGCAGT 59.758 40.000 0.00 0.00 0.00 4.40
4997 10065 6.239008 CCCCATTCATAATAATTGTCGCAGTT 60.239 38.462 0.00 0.00 0.00 3.16
4998 10066 7.202526 CCCATTCATAATAATTGTCGCAGTTT 58.797 34.615 0.00 0.00 0.00 2.66
4999 10067 7.706179 CCCATTCATAATAATTGTCGCAGTTTT 59.294 33.333 0.00 0.00 0.00 2.43
5000 10068 8.533965 CCATTCATAATAATTGTCGCAGTTTTG 58.466 33.333 0.00 0.00 0.00 2.44
5001 10069 9.288124 CATTCATAATAATTGTCGCAGTTTTGA 57.712 29.630 0.00 0.00 0.00 2.69
5002 10070 9.853555 ATTCATAATAATTGTCGCAGTTTTGAA 57.146 25.926 0.00 0.00 0.00 2.69
5003 10071 8.667987 TCATAATAATTGTCGCAGTTTTGAAC 57.332 30.769 0.00 0.00 0.00 3.18
5004 10072 8.511321 TCATAATAATTGTCGCAGTTTTGAACT 58.489 29.630 0.00 0.00 44.06 3.01
5005 10073 9.767684 CATAATAATTGTCGCAGTTTTGAACTA 57.232 29.630 0.00 0.00 40.46 2.24
5008 10076 6.806120 AATTGTCGCAGTTTTGAACTAAAC 57.194 33.333 4.31 4.31 40.46 2.01
5009 10077 4.281525 TGTCGCAGTTTTGAACTAAACC 57.718 40.909 7.87 0.00 40.46 3.27
5010 10078 3.690139 TGTCGCAGTTTTGAACTAAACCA 59.310 39.130 7.87 0.00 40.46 3.67
5011 10079 4.156190 TGTCGCAGTTTTGAACTAAACCAA 59.844 37.500 7.87 0.00 40.46 3.67
5012 10080 5.163602 TGTCGCAGTTTTGAACTAAACCAAT 60.164 36.000 7.87 0.00 40.46 3.16
5026 10094 9.313118 GAACTAAACCAATTTCAAAACTGTGAT 57.687 29.630 0.00 0.00 0.00 3.06
5043 10111 8.877864 AACTGTGATACTTATTTTGGATTGGA 57.122 30.769 0.00 0.00 0.00 3.53
5092 10161 6.660094 CAGTATAGATAACCCAGTACTCCCTC 59.340 46.154 0.00 0.00 0.00 4.30
5094 10163 2.590611 AGATAACCCAGTACTCCCTCCA 59.409 50.000 0.00 0.00 0.00 3.86
5105 10174 7.147373 CCCAGTACTCCCTCCATTTCTAAATAA 60.147 40.741 0.00 0.00 0.00 1.40
5110 10179 8.809468 ACTCCCTCCATTTCTAAATAAAAGTC 57.191 34.615 0.00 0.00 0.00 3.01
5111 10180 8.615705 ACTCCCTCCATTTCTAAATAAAAGTCT 58.384 33.333 0.00 0.00 0.00 3.24
5112 10181 9.467796 CTCCCTCCATTTCTAAATAAAAGTCTT 57.532 33.333 0.00 0.00 0.00 3.01
5113 10182 9.822727 TCCCTCCATTTCTAAATAAAAGTCTTT 57.177 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.308866 GCAGACACCGGATTACATTACAC 59.691 47.826 9.46 0.00 0.00 2.90
1 2 3.196901 AGCAGACACCGGATTACATTACA 59.803 43.478 9.46 0.00 0.00 2.41
2 3 3.555956 CAGCAGACACCGGATTACATTAC 59.444 47.826 9.46 0.00 0.00 1.89
3 4 3.449377 TCAGCAGACACCGGATTACATTA 59.551 43.478 9.46 0.00 0.00 1.90
5 6 1.831106 TCAGCAGACACCGGATTACAT 59.169 47.619 9.46 0.00 0.00 2.29
6 7 1.262417 TCAGCAGACACCGGATTACA 58.738 50.000 9.46 0.00 0.00 2.41
13 14 2.949451 AGACTTATCAGCAGACACCG 57.051 50.000 0.00 0.00 0.00 4.94
116 117 1.501741 CATGCTCGTCCAAAACCCG 59.498 57.895 0.00 0.00 0.00 5.28
117 118 1.595093 CCCATGCTCGTCCAAAACCC 61.595 60.000 0.00 0.00 0.00 4.11
128 129 1.153208 CTGCTCAGTCCCCATGCTC 60.153 63.158 0.00 0.00 0.00 4.26
136 138 0.524862 CCAATGCAACTGCTCAGTCC 59.475 55.000 2.68 0.00 41.58 3.85
140 142 2.203470 TCATCCAATGCAACTGCTCA 57.797 45.000 2.95 0.00 42.66 4.26
205 209 2.866156 CTCTGTACATAACATGGCACCG 59.134 50.000 0.00 0.00 37.50 4.94
206 210 3.206150 CCTCTGTACATAACATGGCACC 58.794 50.000 0.00 0.00 37.50 5.01
215 222 5.488341 GGAAAACTGAGCCTCTGTACATAA 58.512 41.667 4.56 0.00 0.00 1.90
223 230 1.003233 GCGGGAAAACTGAGCCTCT 60.003 57.895 0.00 0.00 0.00 3.69
256 263 4.391405 AACTGAAAAGAAAACCTGCCTG 57.609 40.909 0.00 0.00 0.00 4.85
322 626 3.063045 CGCCGGTTCATAACTTTTCTACC 59.937 47.826 1.90 0.00 0.00 3.18
323 627 3.484721 GCGCCGGTTCATAACTTTTCTAC 60.485 47.826 1.90 0.00 0.00 2.59
324 628 2.674357 GCGCCGGTTCATAACTTTTCTA 59.326 45.455 1.90 0.00 0.00 2.10
326 630 1.198178 TGCGCCGGTTCATAACTTTTC 59.802 47.619 4.18 0.00 0.00 2.29
327 631 1.240256 TGCGCCGGTTCATAACTTTT 58.760 45.000 4.18 0.00 0.00 2.27
328 632 1.199097 CTTGCGCCGGTTCATAACTTT 59.801 47.619 4.18 0.00 0.00 2.66
329 633 0.802494 CTTGCGCCGGTTCATAACTT 59.198 50.000 4.18 0.00 0.00 2.66
330 634 0.036765 TCTTGCGCCGGTTCATAACT 60.037 50.000 4.18 0.00 0.00 2.24
331 635 0.373716 CTCTTGCGCCGGTTCATAAC 59.626 55.000 4.18 0.00 0.00 1.89
347 651 2.519780 GATCGTCCTCGGCCCTCT 60.520 66.667 0.00 0.00 37.69 3.69
381 717 1.133253 CATCTGAACAACGCAGGCG 59.867 57.895 12.71 12.71 46.03 5.52
382 718 0.110056 CACATCTGAACAACGCAGGC 60.110 55.000 0.00 0.00 34.20 4.85
383 719 1.511850 TCACATCTGAACAACGCAGG 58.488 50.000 0.00 0.00 34.20 4.85
384 720 2.663879 GCTTCACATCTGAACAACGCAG 60.664 50.000 0.00 0.00 32.68 5.18
388 724 2.291465 TGCAGCTTCACATCTGAACAAC 59.709 45.455 0.00 0.00 32.68 3.32
394 730 0.803117 CCACTGCAGCTTCACATCTG 59.197 55.000 15.27 0.42 0.00 2.90
395 731 0.959372 GCCACTGCAGCTTCACATCT 60.959 55.000 15.27 0.00 37.47 2.90
444 788 5.122239 TGACAAGTAATTTTCAGGATCTGCG 59.878 40.000 0.00 0.00 0.00 5.18
460 804 6.751157 TCCGTTCTGATTTACTTGACAAGTA 58.249 36.000 21.54 21.54 42.81 2.24
461 805 5.607477 TCCGTTCTGATTTACTTGACAAGT 58.393 37.500 23.61 23.61 45.40 3.16
462 806 5.926542 TCTCCGTTCTGATTTACTTGACAAG 59.073 40.000 13.77 13.77 0.00 3.16
464 808 5.243060 TCTCTCCGTTCTGATTTACTTGACA 59.757 40.000 0.00 0.00 0.00 3.58
465 809 5.710984 TCTCTCCGTTCTGATTTACTTGAC 58.289 41.667 0.00 0.00 0.00 3.18
466 810 5.477291 ACTCTCTCCGTTCTGATTTACTTGA 59.523 40.000 0.00 0.00 0.00 3.02
467 811 5.715070 ACTCTCTCCGTTCTGATTTACTTG 58.285 41.667 0.00 0.00 0.00 3.16
469 813 5.357596 GGTACTCTCTCCGTTCTGATTTACT 59.642 44.000 0.00 0.00 0.00 2.24
470 814 5.357596 AGGTACTCTCTCCGTTCTGATTTAC 59.642 44.000 0.00 0.00 0.00 2.01
471 815 5.357314 CAGGTACTCTCTCCGTTCTGATTTA 59.643 44.000 0.00 0.00 34.60 1.40
472 816 4.158764 CAGGTACTCTCTCCGTTCTGATTT 59.841 45.833 0.00 0.00 34.60 2.17
473 817 3.697045 CAGGTACTCTCTCCGTTCTGATT 59.303 47.826 0.00 0.00 34.60 2.57
475 819 2.040012 ACAGGTACTCTCTCCGTTCTGA 59.960 50.000 0.00 0.00 34.60 3.27
476 820 2.162608 CACAGGTACTCTCTCCGTTCTG 59.837 54.545 0.00 0.00 34.60 3.02
477 821 2.040012 TCACAGGTACTCTCTCCGTTCT 59.960 50.000 0.00 0.00 34.60 3.01
478 822 2.434428 TCACAGGTACTCTCTCCGTTC 58.566 52.381 0.00 0.00 34.60 3.95
479 823 2.581216 TCACAGGTACTCTCTCCGTT 57.419 50.000 0.00 0.00 34.60 4.44
481 825 1.133407 GCTTCACAGGTACTCTCTCCG 59.867 57.143 0.00 0.00 34.60 4.63
482 826 2.171840 TGCTTCACAGGTACTCTCTCC 58.828 52.381 0.00 0.00 34.60 3.71
483 827 3.699038 AGATGCTTCACAGGTACTCTCTC 59.301 47.826 2.07 0.00 34.60 3.20
484 828 3.699038 GAGATGCTTCACAGGTACTCTCT 59.301 47.826 2.07 0.00 34.60 3.10
485 829 3.181480 GGAGATGCTTCACAGGTACTCTC 60.181 52.174 2.07 0.00 34.60 3.20
486 830 2.763448 GGAGATGCTTCACAGGTACTCT 59.237 50.000 2.07 0.00 34.60 3.24
487 831 2.159028 GGGAGATGCTTCACAGGTACTC 60.159 54.545 2.07 0.00 34.60 2.59
488 832 1.834263 GGGAGATGCTTCACAGGTACT 59.166 52.381 2.07 0.00 43.88 2.73
489 833 1.834263 AGGGAGATGCTTCACAGGTAC 59.166 52.381 2.07 0.00 0.00 3.34
548 3820 7.558161 TGTGAATGATGAGTGAATCCAATAC 57.442 36.000 0.00 0.00 0.00 1.89
586 3858 1.133513 ACAAAATGTCACCCCAGAGCA 60.134 47.619 0.00 0.00 0.00 4.26
588 3860 3.129287 GCATACAAAATGTCACCCCAGAG 59.871 47.826 0.00 0.00 0.00 3.35
589 3861 3.088532 GCATACAAAATGTCACCCCAGA 58.911 45.455 0.00 0.00 0.00 3.86
607 3879 0.809241 GAGCGCACTAGAGCAAGCAT 60.809 55.000 11.47 0.00 43.61 3.79
608 3880 1.446792 GAGCGCACTAGAGCAAGCA 60.447 57.895 11.47 0.00 43.61 3.91
647 3919 5.911178 TGAGGTAGTAATTGATTGAGGGGAT 59.089 40.000 0.00 0.00 0.00 3.85
668 3940 3.197333 AGATCAGAGTGGTGGTGATTGAG 59.803 47.826 0.00 0.00 30.93 3.02
690 3962 3.489355 GGCTCATCAGAGAGAGATCAGA 58.511 50.000 6.81 0.00 44.98 3.27
691 3963 2.559668 GGGCTCATCAGAGAGAGATCAG 59.440 54.545 6.81 0.00 44.98 2.90
692 3964 2.596346 GGGCTCATCAGAGAGAGATCA 58.404 52.381 6.81 0.00 44.98 2.92
693 3965 1.541147 CGGGCTCATCAGAGAGAGATC 59.459 57.143 6.81 0.00 44.98 2.75
694 3966 1.619654 CGGGCTCATCAGAGAGAGAT 58.380 55.000 6.81 0.00 44.98 2.75
695 3967 0.467106 CCGGGCTCATCAGAGAGAGA 60.467 60.000 0.00 0.00 44.98 3.10
696 3968 2.040330 CCGGGCTCATCAGAGAGAG 58.960 63.158 0.00 0.79 44.98 3.20
697 3969 2.130426 GCCGGGCTCATCAGAGAGA 61.130 63.158 12.87 0.00 44.98 3.10
698 3970 2.420890 GCCGGGCTCATCAGAGAG 59.579 66.667 12.87 0.00 44.98 3.20
744 4024 1.218316 CCTTGGTAGGCTCCGTGTC 59.782 63.158 0.00 0.00 33.99 3.67
786 4066 2.550101 GCGGCTCATGATTCCCAGC 61.550 63.158 0.00 0.00 0.00 4.85
844 4127 0.179073 GAGTCACAGGCACACAGTGT 60.179 55.000 0.00 0.00 35.75 3.55
865 4201 3.769739 TTTGCTTCCTCAGTTCAGCTA 57.230 42.857 0.00 0.00 33.15 3.32
907 4243 3.961408 AGTGGAGCGGTACAAGATATCTT 59.039 43.478 12.37 12.37 36.45 2.40
914 4250 1.000955 AGTGAAGTGGAGCGGTACAAG 59.999 52.381 0.00 0.00 0.00 3.16
932 4271 2.657237 CACCCGGAGAAGCGAAGT 59.343 61.111 0.73 0.00 0.00 3.01
958 4297 3.005791 AGCAAACTACCAATGGAAGCAAC 59.994 43.478 6.16 0.00 0.00 4.17
973 4312 0.249911 GACGTGGGAGACAGCAAACT 60.250 55.000 0.00 0.00 0.00 2.66
979 4318 2.179517 GCTCGACGTGGGAGACAG 59.820 66.667 15.42 0.00 33.27 3.51
1101 4451 2.570468 TTTCGCACAATCGAGAAACG 57.430 45.000 0.00 0.00 39.82 3.60
1116 4466 3.885484 ACTGCAACAGTCAGAATTTCG 57.115 42.857 0.00 0.00 41.21 3.46
1140 4490 5.009210 TGTTATAACCAACCAAGCAGTCAAC 59.991 40.000 13.01 0.00 0.00 3.18
1148 4498 4.000988 ACGCTCTGTTATAACCAACCAAG 58.999 43.478 13.01 2.93 0.00 3.61
1277 4638 4.577246 GAAGCCGGCGAGCTCGAT 62.577 66.667 38.74 16.35 44.11 3.59
1330 4691 2.240500 GCCATCGCCGTAGCAGAAG 61.241 63.158 0.00 0.00 39.83 2.85
1462 4823 3.680786 CAGAGCCCGTCGTCCACA 61.681 66.667 0.00 0.00 0.00 4.17
1552 4913 1.077858 CAGCTTCTCTTGGAGCCCC 60.078 63.158 0.00 0.00 0.00 5.80
1606 4967 2.087009 GTTGGACTTCGGCGTCTCG 61.087 63.158 6.85 0.00 34.38 4.04
2092 6613 2.415608 GCCGGACACGAGGAGATCA 61.416 63.158 5.05 0.00 44.60 2.92
2095 6616 4.710167 TCGCCGGACACGAGGAGA 62.710 66.667 5.05 0.00 44.60 3.71
2347 6868 1.729470 CGAGGTAGATGTCCAGCGCT 61.729 60.000 2.64 2.64 0.00 5.92
2350 6871 0.671251 CCTCGAGGTAGATGTCCAGC 59.329 60.000 24.04 0.00 0.00 4.85
2373 6894 7.648112 TGAGAATCGAAGAGACGGTTATTAATG 59.352 37.037 0.00 0.00 43.63 1.90
2386 6907 4.437930 GCCCAACATTTGAGAATCGAAGAG 60.438 45.833 0.00 0.00 42.83 2.85
2389 6910 3.191162 CAGCCCAACATTTGAGAATCGAA 59.809 43.478 0.00 0.00 43.91 3.71
2391 6912 2.489329 ACAGCCCAACATTTGAGAATCG 59.511 45.455 0.00 0.00 38.61 3.34
2392 6913 5.841957 ATACAGCCCAACATTTGAGAATC 57.158 39.130 0.00 0.00 0.00 2.52
2408 6930 9.226345 CTGAATCGAATTTTCCTAAAATACAGC 57.774 33.333 0.00 0.00 40.05 4.40
2442 6964 7.172703 ACCTCGTATGATCCGAATTTATTTTCC 59.827 37.037 0.00 0.00 33.34 3.13
2443 6965 8.084590 ACCTCGTATGATCCGAATTTATTTTC 57.915 34.615 0.00 0.00 33.34 2.29
2448 7009 5.777850 TGACCTCGTATGATCCGAATTTA 57.222 39.130 0.00 0.00 33.34 1.40
2451 7012 3.826729 TCATGACCTCGTATGATCCGAAT 59.173 43.478 0.00 0.00 33.34 3.34
2465 7026 4.697514 CATGTCCTAAATCGTCATGACCT 58.302 43.478 20.03 5.02 38.35 3.85
2474 7035 5.389830 CGGTAATCATGCATGTCCTAAATCG 60.390 44.000 25.43 14.03 0.00 3.34
2478 7039 3.495983 CCCGGTAATCATGCATGTCCTAA 60.496 47.826 25.43 7.04 0.00 2.69
2482 7043 2.146342 CTCCCGGTAATCATGCATGTC 58.854 52.381 25.43 14.08 0.00 3.06
2483 7044 1.202806 CCTCCCGGTAATCATGCATGT 60.203 52.381 25.43 10.70 0.00 3.21
2484 7045 1.202806 ACCTCCCGGTAATCATGCATG 60.203 52.381 21.07 21.07 43.29 4.06
2485 7046 1.140312 ACCTCCCGGTAATCATGCAT 58.860 50.000 0.00 0.00 43.29 3.96
2486 7047 0.916086 AACCTCCCGGTAATCATGCA 59.084 50.000 0.00 0.00 44.73 3.96
2510 7071 4.082408 GCTACACCCCAACTAAATCAAACC 60.082 45.833 0.00 0.00 0.00 3.27
2518 7079 5.968676 ATCATTAGCTACACCCCAACTAA 57.031 39.130 0.00 0.00 0.00 2.24
2565 7126 3.181479 TGTCATGGCAGAGAATACCGTAC 60.181 47.826 0.00 0.00 0.00 3.67
2566 7127 3.028130 TGTCATGGCAGAGAATACCGTA 58.972 45.455 0.00 0.00 0.00 4.02
2567 7128 1.831106 TGTCATGGCAGAGAATACCGT 59.169 47.619 0.00 0.00 0.00 4.83
2568 7129 2.159043 ACTGTCATGGCAGAGAATACCG 60.159 50.000 33.11 5.04 39.62 4.02
2569 7130 3.201290 CACTGTCATGGCAGAGAATACC 58.799 50.000 33.11 0.00 39.62 2.73
2585 7146 1.608590 CACGGAGGAAAAATGCACTGT 59.391 47.619 0.00 0.00 0.00 3.55
2603 7165 2.267324 GCCCTCTCTGACCAGCAC 59.733 66.667 0.00 0.00 0.00 4.40
2623 7185 5.472137 TGAAAATCTTGGTAACCTACAGTGC 59.528 40.000 0.00 0.00 0.00 4.40
2626 7188 6.149474 CAGGTGAAAATCTTGGTAACCTACAG 59.851 42.308 0.00 0.00 34.84 2.74
2627 7189 6.001460 CAGGTGAAAATCTTGGTAACCTACA 58.999 40.000 0.00 0.00 34.84 2.74
2628 7190 5.414765 CCAGGTGAAAATCTTGGTAACCTAC 59.585 44.000 0.00 0.00 34.84 3.18
2630 7192 4.407365 CCAGGTGAAAATCTTGGTAACCT 58.593 43.478 0.00 0.00 37.02 3.50
2632 7194 3.572255 TGCCAGGTGAAAATCTTGGTAAC 59.428 43.478 0.00 0.00 0.00 2.50
2633 7195 3.572255 GTGCCAGGTGAAAATCTTGGTAA 59.428 43.478 0.00 0.00 0.00 2.85
2670 7232 4.397417 GCACTAGTTTGCCTGAAATCATCT 59.603 41.667 0.00 0.00 36.42 2.90
2712 7274 6.487689 AGAAAATGCTAGCAACTTAGTCAC 57.512 37.500 23.54 5.71 0.00 3.67
2727 7468 8.296713 TCTGTAACAAATTGGACTAGAAAATGC 58.703 33.333 0.00 0.00 0.00 3.56
2810 7647 7.308408 CCATCGACTTGGACGTAAGATAAGATA 60.308 40.741 5.10 0.00 39.25 1.98
2811 7648 6.439599 CATCGACTTGGACGTAAGATAAGAT 58.560 40.000 5.10 2.19 43.62 2.40
2812 7649 5.220989 CCATCGACTTGGACGTAAGATAAGA 60.221 44.000 5.10 0.19 39.25 2.10
2813 7650 4.976731 CCATCGACTTGGACGTAAGATAAG 59.023 45.833 5.10 1.01 39.25 1.73
2826 7664 5.147865 CGAGTAGCTAATACCATCGACTTG 58.852 45.833 0.00 0.00 35.27 3.16
2850 7691 1.135575 CGATTGCTTTGCAGAAGACCC 60.136 52.381 11.34 0.00 40.61 4.46
2857 7837 3.257393 ACTCTACTCGATTGCTTTGCAG 58.743 45.455 0.00 0.00 40.61 4.41
2867 7866 3.181485 GCTGCTACCAAACTCTACTCGAT 60.181 47.826 0.00 0.00 0.00 3.59
2868 7867 2.163815 GCTGCTACCAAACTCTACTCGA 59.836 50.000 0.00 0.00 0.00 4.04
2872 7871 3.320673 AGTGCTGCTACCAAACTCTAC 57.679 47.619 0.00 0.00 0.00 2.59
2894 7893 1.338136 ATCCCACGGTGAGGTGATCC 61.338 60.000 10.28 0.00 40.38 3.36
2904 7903 1.694150 CCATCACTATCATCCCACGGT 59.306 52.381 0.00 0.00 0.00 4.83
2907 7906 3.260380 CCTCTCCATCACTATCATCCCAC 59.740 52.174 0.00 0.00 0.00 4.61
2926 7925 1.446272 GCGCTACACACTCCACCTC 60.446 63.158 0.00 0.00 0.00 3.85
2943 7942 4.009675 TCCATACTCCATGACACAAAAGC 58.990 43.478 0.00 0.00 36.69 3.51
2969 7968 1.987770 CATCGCAGCGCAAAGAAATTT 59.012 42.857 10.87 0.00 0.00 1.82
3015 8015 4.039245 ACTGACAAGGTTTCGAGATCTGAA 59.961 41.667 0.00 1.50 0.00 3.02
3042 8042 3.606687 GGACATGGGTAGTTAGTGTTGG 58.393 50.000 0.00 0.00 0.00 3.77
3093 8098 1.665169 CGAATGGATTGACGATGCACA 59.335 47.619 0.00 0.00 39.03 4.57
3096 8102 1.933181 TGTCGAATGGATTGACGATGC 59.067 47.619 0.00 0.00 37.14 3.91
3100 8106 1.003545 GGCATGTCGAATGGATTGACG 60.004 52.381 0.00 0.00 35.40 4.35
3148 8164 0.746204 TTGTTGCGAGTGCTGGTTCA 60.746 50.000 0.00 0.00 43.34 3.18
3160 8189 2.719798 CCAAAGTTCAGAGTTGTTGCG 58.280 47.619 0.00 0.00 0.00 4.85
3196 8225 2.715268 CTGGCAAACACGTGTTGTAAG 58.285 47.619 32.89 22.48 37.51 2.34
3206 8239 2.036346 AGAGGAAAATGCTGGCAAACAC 59.964 45.455 0.00 0.00 0.00 3.32
3266 8300 3.748568 ACAAAGGCGAAATCTCAGTTCTC 59.251 43.478 0.00 0.00 0.00 2.87
3296 8330 7.041235 GCTAACAGTACTACCTACTATCACCAG 60.041 44.444 0.00 0.00 33.53 4.00
3303 8337 7.177878 ACAAAGGCTAACAGTACTACCTACTA 58.822 38.462 0.00 0.00 33.53 1.82
3304 8338 6.015282 ACAAAGGCTAACAGTACTACCTACT 58.985 40.000 0.00 0.00 35.94 2.57
3305 8339 6.278172 ACAAAGGCTAACAGTACTACCTAC 57.722 41.667 0.00 0.00 0.00 3.18
3394 8428 1.369403 AGGGGAGGAAGGTGGTTAAC 58.631 55.000 0.00 0.00 0.00 2.01
3411 8445 3.317430 AGCAGAAAGAGCAGACAAAAAGG 59.683 43.478 0.00 0.00 0.00 3.11
3498 8532 1.428448 TCGGCGTTTGATGAACAGAG 58.572 50.000 6.85 0.00 38.18 3.35
3521 8555 8.693542 TCGGTAACTAAGAGCTTATACAAAAC 57.306 34.615 0.00 0.00 0.00 2.43
3527 8561 9.525409 GTCAAATTCGGTAACTAAGAGCTTATA 57.475 33.333 0.00 0.00 0.00 0.98
3528 8562 7.222224 CGTCAAATTCGGTAACTAAGAGCTTAT 59.778 37.037 0.00 0.00 0.00 1.73
3544 8578 5.609382 TTACATACGCTACGTCAAATTCG 57.391 39.130 0.00 0.00 41.54 3.34
3559 8593 9.525409 AGAATTTACAGTCGGTACATTACATAC 57.475 33.333 0.00 0.00 33.60 2.39
3658 8696 4.142271 TGCATCTTCCGTTGTTTTCTTTGT 60.142 37.500 0.00 0.00 0.00 2.83
3659 8697 4.358851 TGCATCTTCCGTTGTTTTCTTTG 58.641 39.130 0.00 0.00 0.00 2.77
3663 8701 4.425577 AGATGCATCTTCCGTTGTTTTC 57.574 40.909 23.75 0.00 31.97 2.29
3668 8706 5.295431 TGTTTTAGATGCATCTTCCGTTG 57.705 39.130 32.94 0.00 38.32 4.10
3671 8709 5.327091 CAGTTGTTTTAGATGCATCTTCCG 58.673 41.667 32.94 9.08 38.32 4.30
3712 8758 6.015688 ACAAACATTACACTCTCTCTCCGTAA 60.016 38.462 0.00 0.00 0.00 3.18
3713 8759 5.475909 ACAAACATTACACTCTCTCTCCGTA 59.524 40.000 0.00 0.00 0.00 4.02
3821 8870 4.373116 GCACGCCTCGAGGGTCAA 62.373 66.667 32.06 0.00 40.21 3.18
3919 8968 2.636412 CGACGACAAGGGGCTCTGA 61.636 63.158 0.00 0.00 0.00 3.27
3950 8999 4.309950 GTCGTCCGGCACAACCCT 62.310 66.667 0.00 0.00 33.26 4.34
3959 9008 2.097918 CTTCTCGTCGTCGTCCGG 59.902 66.667 0.00 0.00 38.33 5.14
3962 9011 0.795085 TTCTCCTTCTCGTCGTCGTC 59.205 55.000 1.33 0.00 38.33 4.20
3963 9012 0.797542 CTTCTCCTTCTCGTCGTCGT 59.202 55.000 1.33 0.00 38.33 4.34
3964 9013 0.097325 CCTTCTCCTTCTCGTCGTCG 59.903 60.000 0.00 0.00 38.55 5.12
3967 9016 1.399089 GTCTCCTTCTCCTTCTCGTCG 59.601 57.143 0.00 0.00 0.00 5.12
3989 9038 3.159472 TCAGTCGTAGGTTTAGCCTCAA 58.841 45.455 0.00 0.00 46.96 3.02
3997 9046 1.066143 CCCTGCATCAGTCGTAGGTTT 60.066 52.381 0.00 0.00 0.00 3.27
4177 9232 0.560688 AAGAGCCTCACCCCCAAAAA 59.439 50.000 0.00 0.00 0.00 1.94
4181 9236 3.650950 GCAAGAGCCTCACCCCCA 61.651 66.667 0.00 0.00 33.58 4.96
4219 9285 5.466728 TGCAGCAAAAACAACTGTACAAAAA 59.533 32.000 0.00 0.00 33.87 1.94
4237 9305 4.475051 AGCCAAAAATATCAATGCAGCA 57.525 36.364 0.00 0.00 0.00 4.41
4261 9329 2.256174 CAATCAGCAATCAACAAGGCG 58.744 47.619 0.00 0.00 0.00 5.52
4441 9509 5.942236 ACATCTGATGCATAAATCGGCTAAT 59.058 36.000 17.24 0.00 33.63 1.73
4442 9510 5.308014 ACATCTGATGCATAAATCGGCTAA 58.692 37.500 17.24 0.00 33.63 3.09
4443 9511 4.898320 ACATCTGATGCATAAATCGGCTA 58.102 39.130 17.24 0.00 33.63 3.93
4444 9512 3.748083 ACATCTGATGCATAAATCGGCT 58.252 40.909 17.24 0.00 33.63 5.52
4445 9513 4.214971 AGAACATCTGATGCATAAATCGGC 59.785 41.667 17.24 0.00 33.63 5.54
4446 9514 5.936686 AGAACATCTGATGCATAAATCGG 57.063 39.130 17.24 0.00 34.72 4.18
4447 9515 7.854534 TGTTAGAACATCTGATGCATAAATCG 58.145 34.615 17.24 0.00 33.17 3.34
4452 9520 9.056005 GGTAATTGTTAGAACATCTGATGCATA 57.944 33.333 17.24 5.42 38.95 3.14
4453 9521 7.557358 TGGTAATTGTTAGAACATCTGATGCAT 59.443 33.333 17.24 0.00 38.95 3.96
4454 9522 6.883756 TGGTAATTGTTAGAACATCTGATGCA 59.116 34.615 17.24 3.65 38.95 3.96
4455 9523 7.320443 TGGTAATTGTTAGAACATCTGATGC 57.680 36.000 17.24 2.53 38.95 3.91
4508 9576 9.268268 TGTTGTTCAAGTCTAGTTTCGATTAAT 57.732 29.630 0.00 0.00 0.00 1.40
4509 9577 8.651391 TGTTGTTCAAGTCTAGTTTCGATTAA 57.349 30.769 0.00 0.00 0.00 1.40
4510 9578 8.708742 CATGTTGTTCAAGTCTAGTTTCGATTA 58.291 33.333 0.00 0.00 0.00 1.75
4511 9579 7.441157 TCATGTTGTTCAAGTCTAGTTTCGATT 59.559 33.333 0.00 0.00 0.00 3.34
4512 9580 6.929049 TCATGTTGTTCAAGTCTAGTTTCGAT 59.071 34.615 0.00 0.00 0.00 3.59
4513 9581 6.277605 TCATGTTGTTCAAGTCTAGTTTCGA 58.722 36.000 0.00 0.00 0.00 3.71
4514 9582 6.525121 TCATGTTGTTCAAGTCTAGTTTCG 57.475 37.500 0.00 0.00 0.00 3.46
4515 9583 8.087982 TCATCATGTTGTTCAAGTCTAGTTTC 57.912 34.615 3.76 0.00 0.00 2.78
4516 9584 7.173907 CCTCATCATGTTGTTCAAGTCTAGTTT 59.826 37.037 3.76 0.00 0.00 2.66
4517 9585 6.652481 CCTCATCATGTTGTTCAAGTCTAGTT 59.348 38.462 3.76 0.00 0.00 2.24
4518 9586 6.169094 CCTCATCATGTTGTTCAAGTCTAGT 58.831 40.000 3.76 0.00 0.00 2.57
4519 9587 6.169094 ACCTCATCATGTTGTTCAAGTCTAG 58.831 40.000 3.76 0.00 0.00 2.43
4520 9588 6.114187 ACCTCATCATGTTGTTCAAGTCTA 57.886 37.500 3.76 0.00 0.00 2.59
4521 9589 4.978099 ACCTCATCATGTTGTTCAAGTCT 58.022 39.130 3.76 0.00 0.00 3.24
4522 9590 5.695851 AACCTCATCATGTTGTTCAAGTC 57.304 39.130 3.76 0.00 0.00 3.01
4523 9591 7.255590 CCTTTAACCTCATCATGTTGTTCAAGT 60.256 37.037 3.76 0.00 0.00 3.16
4524 9592 7.086376 CCTTTAACCTCATCATGTTGTTCAAG 58.914 38.462 3.76 8.07 0.00 3.02
4525 9593 6.516527 GCCTTTAACCTCATCATGTTGTTCAA 60.517 38.462 3.76 0.00 0.00 2.69
4526 9594 5.048083 GCCTTTAACCTCATCATGTTGTTCA 60.048 40.000 3.76 0.00 0.00 3.18
4527 9595 5.402398 GCCTTTAACCTCATCATGTTGTTC 58.598 41.667 3.76 0.00 0.00 3.18
4528 9596 4.220602 GGCCTTTAACCTCATCATGTTGTT 59.779 41.667 0.00 1.23 0.00 2.83
4529 9597 3.763897 GGCCTTTAACCTCATCATGTTGT 59.236 43.478 0.00 0.00 0.00 3.32
4530 9598 3.763360 TGGCCTTTAACCTCATCATGTTG 59.237 43.478 3.32 0.00 0.00 3.33
4531 9599 4.019174 CTGGCCTTTAACCTCATCATGTT 58.981 43.478 3.32 0.00 0.00 2.71
4532 9600 3.624777 CTGGCCTTTAACCTCATCATGT 58.375 45.455 3.32 0.00 0.00 3.21
4533 9601 2.360165 GCTGGCCTTTAACCTCATCATG 59.640 50.000 3.32 0.00 0.00 3.07
4534 9602 2.025037 TGCTGGCCTTTAACCTCATCAT 60.025 45.455 3.32 0.00 0.00 2.45
4535 9603 1.354031 TGCTGGCCTTTAACCTCATCA 59.646 47.619 3.32 0.00 0.00 3.07
4536 9604 2.128771 TGCTGGCCTTTAACCTCATC 57.871 50.000 3.32 0.00 0.00 2.92
4537 9605 2.834638 ATGCTGGCCTTTAACCTCAT 57.165 45.000 3.32 0.00 0.00 2.90
4538 9606 3.053693 ACATATGCTGGCCTTTAACCTCA 60.054 43.478 3.32 0.00 0.00 3.86
4539 9607 3.555966 ACATATGCTGGCCTTTAACCTC 58.444 45.455 3.32 0.00 0.00 3.85
4540 9608 3.555966 GACATATGCTGGCCTTTAACCT 58.444 45.455 3.32 0.00 0.00 3.50
4541 9609 2.290641 CGACATATGCTGGCCTTTAACC 59.709 50.000 3.32 0.00 0.00 2.85
4542 9610 2.290641 CCGACATATGCTGGCCTTTAAC 59.709 50.000 3.32 0.00 0.00 2.01
4543 9611 2.092646 ACCGACATATGCTGGCCTTTAA 60.093 45.455 3.32 0.00 0.00 1.52
4544 9612 1.488812 ACCGACATATGCTGGCCTTTA 59.511 47.619 3.32 0.00 0.00 1.85
4545 9613 0.255890 ACCGACATATGCTGGCCTTT 59.744 50.000 3.32 0.00 0.00 3.11
4546 9614 1.128200 TACCGACATATGCTGGCCTT 58.872 50.000 3.32 0.00 0.00 4.35
4547 9615 0.393077 GTACCGACATATGCTGGCCT 59.607 55.000 3.32 0.00 0.00 5.19
4548 9616 0.602905 GGTACCGACATATGCTGGCC 60.603 60.000 12.51 0.00 0.00 5.36
4549 9617 0.105964 TGGTACCGACATATGCTGGC 59.894 55.000 7.57 0.00 0.00 4.85
4550 9618 1.138069 TGTGGTACCGACATATGCTGG 59.862 52.381 7.57 11.31 0.00 4.85
4551 9619 2.595124 TGTGGTACCGACATATGCTG 57.405 50.000 7.57 0.00 0.00 4.41
4552 9620 2.698274 TGATGTGGTACCGACATATGCT 59.302 45.455 22.17 8.04 34.10 3.79
4553 9621 3.106242 TGATGTGGTACCGACATATGC 57.894 47.619 22.17 14.32 34.10 3.14
4554 9622 4.864806 GCTATGATGTGGTACCGACATATG 59.135 45.833 22.17 15.52 34.10 1.78
4555 9623 4.380550 CGCTATGATGTGGTACCGACATAT 60.381 45.833 22.17 18.09 34.10 1.78
4556 9624 3.057806 CGCTATGATGTGGTACCGACATA 60.058 47.826 22.17 18.21 34.10 2.29
4557 9625 2.288213 CGCTATGATGTGGTACCGACAT 60.288 50.000 22.26 22.26 36.73 3.06
4558 9626 1.066454 CGCTATGATGTGGTACCGACA 59.934 52.381 16.28 16.28 0.00 4.35
4559 9627 1.066605 ACGCTATGATGTGGTACCGAC 59.933 52.381 7.57 7.43 0.00 4.79
4560 9628 1.335810 GACGCTATGATGTGGTACCGA 59.664 52.381 7.57 0.00 0.00 4.69
4561 9629 1.337071 AGACGCTATGATGTGGTACCG 59.663 52.381 7.57 0.00 0.00 4.02
4562 9630 2.623889 AGAGACGCTATGATGTGGTACC 59.376 50.000 4.43 4.43 0.00 3.34
4563 9631 3.992260 AGAGACGCTATGATGTGGTAC 57.008 47.619 0.00 0.00 0.00 3.34
4574 9642 9.856488 GGAATATAAATCAACATAGAGACGCTA 57.144 33.333 0.00 0.00 0.00 4.26
4575 9643 8.367911 TGGAATATAAATCAACATAGAGACGCT 58.632 33.333 0.00 0.00 0.00 5.07
4576 9644 8.534333 TGGAATATAAATCAACATAGAGACGC 57.466 34.615 0.00 0.00 0.00 5.19
4595 9663 8.846211 GGATCCTATTCAATCGTTTTTGGAATA 58.154 33.333 3.84 0.00 0.00 1.75
4596 9664 7.561356 AGGATCCTATTCAATCGTTTTTGGAAT 59.439 33.333 14.27 0.00 0.00 3.01
4597 9665 6.889722 AGGATCCTATTCAATCGTTTTTGGAA 59.110 34.615 14.27 0.00 0.00 3.53
4598 9666 6.423182 AGGATCCTATTCAATCGTTTTTGGA 58.577 36.000 14.27 0.00 0.00 3.53
4599 9667 6.699575 AGGATCCTATTCAATCGTTTTTGG 57.300 37.500 14.27 0.00 0.00 3.28
4600 9668 7.857885 GCTAAGGATCCTATTCAATCGTTTTTG 59.142 37.037 16.55 0.00 33.45 2.44
4601 9669 7.556275 TGCTAAGGATCCTATTCAATCGTTTTT 59.444 33.333 16.55 0.00 33.45 1.94
4602 9670 7.054124 TGCTAAGGATCCTATTCAATCGTTTT 58.946 34.615 16.55 0.00 33.45 2.43
4603 9671 6.591935 TGCTAAGGATCCTATTCAATCGTTT 58.408 36.000 16.55 0.00 33.45 3.60
4604 9672 6.174720 TGCTAAGGATCCTATTCAATCGTT 57.825 37.500 16.55 0.00 35.08 3.85
4605 9673 5.808366 TGCTAAGGATCCTATTCAATCGT 57.192 39.130 16.55 0.00 0.00 3.73
4606 9674 6.483307 TGTTTGCTAAGGATCCTATTCAATCG 59.517 38.462 16.55 0.00 0.00 3.34
4607 9675 7.807977 TGTTTGCTAAGGATCCTATTCAATC 57.192 36.000 16.55 16.37 0.00 2.67
4608 9676 8.055181 TCTTGTTTGCTAAGGATCCTATTCAAT 58.945 33.333 16.55 0.00 0.00 2.57
4609 9677 7.402054 TCTTGTTTGCTAAGGATCCTATTCAA 58.598 34.615 16.55 15.41 0.00 2.69
4610 9678 6.957631 TCTTGTTTGCTAAGGATCCTATTCA 58.042 36.000 16.55 10.06 0.00 2.57
4611 9679 7.865706 TTCTTGTTTGCTAAGGATCCTATTC 57.134 36.000 16.55 7.39 0.00 1.75
4612 9680 8.650143 TTTTCTTGTTTGCTAAGGATCCTATT 57.350 30.769 16.55 2.32 0.00 1.73
4613 9681 8.829373 ATTTTCTTGTTTGCTAAGGATCCTAT 57.171 30.769 16.55 8.15 0.00 2.57
4614 9682 9.396022 CTATTTTCTTGTTTGCTAAGGATCCTA 57.604 33.333 16.55 0.00 0.00 2.94
4615 9683 7.890655 ACTATTTTCTTGTTTGCTAAGGATCCT 59.109 33.333 9.02 9.02 0.00 3.24
4616 9684 8.056407 ACTATTTTCTTGTTTGCTAAGGATCC 57.944 34.615 2.48 2.48 0.00 3.36
4617 9685 9.346725 CAACTATTTTCTTGTTTGCTAAGGATC 57.653 33.333 0.00 0.00 0.00 3.36
4618 9686 8.860088 ACAACTATTTTCTTGTTTGCTAAGGAT 58.140 29.630 0.00 0.00 0.00 3.24
4619 9687 8.232913 ACAACTATTTTCTTGTTTGCTAAGGA 57.767 30.769 0.00 0.00 0.00 3.36
4620 9688 8.871686 AACAACTATTTTCTTGTTTGCTAAGG 57.128 30.769 0.00 0.00 37.31 2.69
4651 9719 9.590451 CAGATGCTTACCACATAAAATTCAATT 57.410 29.630 0.00 0.00 0.00 2.32
4652 9720 7.707893 GCAGATGCTTACCACATAAAATTCAAT 59.292 33.333 0.00 0.00 38.21 2.57
4653 9721 7.035004 GCAGATGCTTACCACATAAAATTCAA 58.965 34.615 0.00 0.00 38.21 2.69
4654 9722 6.405731 GGCAGATGCTTACCACATAAAATTCA 60.406 38.462 4.59 0.00 41.70 2.57
4655 9723 5.979517 GGCAGATGCTTACCACATAAAATTC 59.020 40.000 4.59 0.00 41.70 2.17
4656 9724 5.658190 AGGCAGATGCTTACCACATAAAATT 59.342 36.000 4.59 0.00 41.70 1.82
4657 9725 5.203528 AGGCAGATGCTTACCACATAAAAT 58.796 37.500 4.59 0.00 41.70 1.82
4658 9726 4.599041 AGGCAGATGCTTACCACATAAAA 58.401 39.130 4.59 0.00 41.70 1.52
4659 9727 4.235079 AGGCAGATGCTTACCACATAAA 57.765 40.909 4.59 0.00 41.70 1.40
4660 9728 3.931907 AGGCAGATGCTTACCACATAA 57.068 42.857 4.59 0.00 41.70 1.90
4661 9729 6.874278 ATATAGGCAGATGCTTACCACATA 57.126 37.500 4.59 0.00 41.70 2.29
4662 9730 5.768980 ATATAGGCAGATGCTTACCACAT 57.231 39.130 4.59 0.00 41.70 3.21
4663 9731 6.440328 TGATATATAGGCAGATGCTTACCACA 59.560 38.462 4.59 0.00 41.70 4.17
4664 9732 6.878317 TGATATATAGGCAGATGCTTACCAC 58.122 40.000 4.59 0.00 41.70 4.16
4665 9733 7.494922 TTGATATATAGGCAGATGCTTACCA 57.505 36.000 4.59 0.00 41.70 3.25
4666 9734 7.824289 TGTTTGATATATAGGCAGATGCTTACC 59.176 37.037 4.59 0.00 41.70 2.85
4667 9735 8.777865 TGTTTGATATATAGGCAGATGCTTAC 57.222 34.615 4.59 0.00 41.70 2.34
4668 9736 9.964354 ATTGTTTGATATATAGGCAGATGCTTA 57.036 29.630 4.59 1.58 41.70 3.09
4669 9737 8.874744 ATTGTTTGATATATAGGCAGATGCTT 57.125 30.769 4.59 0.00 41.70 3.91
4670 9738 9.388506 GTATTGTTTGATATATAGGCAGATGCT 57.611 33.333 4.59 0.00 41.70 3.79
4671 9739 9.166173 TGTATTGTTTGATATATAGGCAGATGC 57.834 33.333 0.00 0.00 41.14 3.91
4687 9755 9.341899 GCCTAGTACTTTTGATTGTATTGTTTG 57.658 33.333 0.00 0.00 0.00 2.93
4688 9756 9.073475 TGCCTAGTACTTTTGATTGTATTGTTT 57.927 29.630 0.00 0.00 0.00 2.83
4689 9757 8.630054 TGCCTAGTACTTTTGATTGTATTGTT 57.370 30.769 0.00 0.00 0.00 2.83
4690 9758 8.807948 ATGCCTAGTACTTTTGATTGTATTGT 57.192 30.769 0.00 0.00 0.00 2.71
4719 9787 9.120538 GAGCCATAAGACATATACCTTCAAAAA 57.879 33.333 0.00 0.00 0.00 1.94
4720 9788 8.271458 TGAGCCATAAGACATATACCTTCAAAA 58.729 33.333 0.00 0.00 0.00 2.44
4721 9789 7.801104 TGAGCCATAAGACATATACCTTCAAA 58.199 34.615 0.00 0.00 0.00 2.69
4722 9790 7.373617 TGAGCCATAAGACATATACCTTCAA 57.626 36.000 0.00 0.00 0.00 2.69
4723 9791 6.994421 TGAGCCATAAGACATATACCTTCA 57.006 37.500 0.00 0.00 0.00 3.02
4724 9792 8.531982 TGTATGAGCCATAAGACATATACCTTC 58.468 37.037 0.00 0.00 0.00 3.46
4725 9793 8.435931 TGTATGAGCCATAAGACATATACCTT 57.564 34.615 0.00 0.00 0.00 3.50
4726 9794 8.481314 CATGTATGAGCCATAAGACATATACCT 58.519 37.037 0.00 0.00 0.00 3.08
4727 9795 8.260818 ACATGTATGAGCCATAAGACATATACC 58.739 37.037 0.00 0.00 0.00 2.73
4730 9798 9.881649 CTTACATGTATGAGCCATAAGACATAT 57.118 33.333 12.29 0.00 0.00 1.78
4731 9799 9.088987 TCTTACATGTATGAGCCATAAGACATA 57.911 33.333 15.48 0.00 0.00 2.29
4732 9800 7.966812 TCTTACATGTATGAGCCATAAGACAT 58.033 34.615 15.48 0.00 0.00 3.06
4733 9801 7.360113 TCTTACATGTATGAGCCATAAGACA 57.640 36.000 15.48 0.00 0.00 3.41
4734 9802 8.839310 AATCTTACATGTATGAGCCATAAGAC 57.161 34.615 21.74 0.00 0.00 3.01
4741 9809 9.522804 GCTACTATAATCTTACATGTATGAGCC 57.477 37.037 21.74 4.44 0.00 4.70
4782 9850 9.632807 GCATGTATTTGTTATAAGTTGGTTCAA 57.367 29.630 0.00 0.00 0.00 2.69
4783 9851 8.797438 TGCATGTATTTGTTATAAGTTGGTTCA 58.203 29.630 0.00 0.00 0.00 3.18
4784 9852 9.801873 ATGCATGTATTTGTTATAAGTTGGTTC 57.198 29.630 0.00 0.00 0.00 3.62
4805 9873 9.520204 GCAAATCAAAAGTACTACAATATGCAT 57.480 29.630 3.79 3.79 0.00 3.96
4806 9874 7.973388 GGCAAATCAAAAGTACTACAATATGCA 59.027 33.333 14.94 0.00 0.00 3.96
4807 9875 8.190784 AGGCAAATCAAAAGTACTACAATATGC 58.809 33.333 0.00 2.47 0.00 3.14
4812 9880 9.738832 GTTTTAGGCAAATCAAAAGTACTACAA 57.261 29.630 0.00 0.00 0.00 2.41
4813 9881 9.127277 AGTTTTAGGCAAATCAAAAGTACTACA 57.873 29.630 0.00 0.00 0.00 2.74
4816 9884 8.793592 CCTAGTTTTAGGCAAATCAAAAGTACT 58.206 33.333 0.00 0.00 40.10 2.73
4817 9885 8.789762 TCCTAGTTTTAGGCAAATCAAAAGTAC 58.210 33.333 0.00 0.00 45.25 2.73
4818 9886 8.927675 TCCTAGTTTTAGGCAAATCAAAAGTA 57.072 30.769 0.00 0.00 45.25 2.24
4819 9887 7.833285 TCCTAGTTTTAGGCAAATCAAAAGT 57.167 32.000 0.00 0.00 45.25 2.66
4820 9888 9.541143 TTTTCCTAGTTTTAGGCAAATCAAAAG 57.459 29.630 0.00 0.00 45.25 2.27
4894 9962 9.513906 TGTTCCTTGTTATCTCATAATCACAAA 57.486 29.630 0.00 0.00 0.00 2.83
4895 9963 9.685276 ATGTTCCTTGTTATCTCATAATCACAA 57.315 29.630 0.00 0.00 0.00 3.33
4911 9979 9.686683 AGTGCTAAAATCTTATATGTTCCTTGT 57.313 29.630 0.00 0.00 0.00 3.16
4918 9986 9.826574 TCCGTAAAGTGCTAAAATCTTATATGT 57.173 29.630 0.00 0.00 0.00 2.29
4927 9995 9.623000 ACCTATAAATCCGTAAAGTGCTAAAAT 57.377 29.630 0.00 0.00 0.00 1.82
4928 9996 9.101655 GACCTATAAATCCGTAAAGTGCTAAAA 57.898 33.333 0.00 0.00 0.00 1.52
4929 9997 8.259411 TGACCTATAAATCCGTAAAGTGCTAAA 58.741 33.333 0.00 0.00 0.00 1.85
4930 9998 7.784037 TGACCTATAAATCCGTAAAGTGCTAA 58.216 34.615 0.00 0.00 0.00 3.09
4931 9999 7.350744 TGACCTATAAATCCGTAAAGTGCTA 57.649 36.000 0.00 0.00 0.00 3.49
4932 10000 6.229936 TGACCTATAAATCCGTAAAGTGCT 57.770 37.500 0.00 0.00 0.00 4.40
4933 10001 6.929606 AGATGACCTATAAATCCGTAAAGTGC 59.070 38.462 0.00 0.00 0.00 4.40
4934 10002 9.627395 CTAGATGACCTATAAATCCGTAAAGTG 57.373 37.037 0.00 0.00 0.00 3.16
4935 10003 9.584008 TCTAGATGACCTATAAATCCGTAAAGT 57.416 33.333 0.00 0.00 0.00 2.66
4936 10004 9.843334 GTCTAGATGACCTATAAATCCGTAAAG 57.157 37.037 0.00 0.00 39.69 1.85
4937 10005 9.358406 TGTCTAGATGACCTATAAATCCGTAAA 57.642 33.333 0.00 0.00 44.75 2.01
4938 10006 8.790718 GTGTCTAGATGACCTATAAATCCGTAA 58.209 37.037 0.00 0.00 44.75 3.18
4939 10007 7.118825 CGTGTCTAGATGACCTATAAATCCGTA 59.881 40.741 0.00 0.00 44.75 4.02
4940 10008 6.072618 CGTGTCTAGATGACCTATAAATCCGT 60.073 42.308 0.00 0.00 44.75 4.69
4941 10009 6.072618 ACGTGTCTAGATGACCTATAAATCCG 60.073 42.308 0.00 0.00 44.75 4.18
4942 10010 7.216973 ACGTGTCTAGATGACCTATAAATCC 57.783 40.000 0.00 0.00 44.75 3.01
4943 10011 9.001542 AGTACGTGTCTAGATGACCTATAAATC 57.998 37.037 0.00 0.00 44.75 2.17
4944 10012 8.921353 AGTACGTGTCTAGATGACCTATAAAT 57.079 34.615 0.00 0.00 44.75 1.40
4945 10013 9.265901 GTAGTACGTGTCTAGATGACCTATAAA 57.734 37.037 0.00 0.00 44.75 1.40
4946 10014 7.875041 GGTAGTACGTGTCTAGATGACCTATAA 59.125 40.741 0.00 0.00 44.75 0.98
4947 10015 7.382110 GGTAGTACGTGTCTAGATGACCTATA 58.618 42.308 0.00 0.00 44.75 1.31
4948 10016 6.229733 GGTAGTACGTGTCTAGATGACCTAT 58.770 44.000 0.00 0.00 44.75 2.57
4949 10017 5.453903 GGGTAGTACGTGTCTAGATGACCTA 60.454 48.000 0.00 0.00 44.75 3.08
4950 10018 4.450053 GGTAGTACGTGTCTAGATGACCT 58.550 47.826 0.00 0.00 44.75 3.85
4951 10019 3.563390 GGGTAGTACGTGTCTAGATGACC 59.437 52.174 0.00 0.95 44.75 4.02
4952 10020 3.563390 GGGGTAGTACGTGTCTAGATGAC 59.437 52.174 0.00 0.00 45.54 3.06
4953 10021 3.434167 GGGGGTAGTACGTGTCTAGATGA 60.434 52.174 0.00 0.00 0.00 2.92
4954 10022 2.883386 GGGGGTAGTACGTGTCTAGATG 59.117 54.545 0.00 0.00 0.00 2.90
4955 10023 2.511218 TGGGGGTAGTACGTGTCTAGAT 59.489 50.000 0.00 0.00 0.00 1.98
4956 10024 1.915489 TGGGGGTAGTACGTGTCTAGA 59.085 52.381 0.00 0.00 0.00 2.43
4957 10025 2.425143 TGGGGGTAGTACGTGTCTAG 57.575 55.000 0.00 0.00 0.00 2.43
4958 10026 3.290710 GAATGGGGGTAGTACGTGTCTA 58.709 50.000 0.00 0.00 0.00 2.59
4959 10027 2.105766 GAATGGGGGTAGTACGTGTCT 58.894 52.381 0.00 0.00 0.00 3.41
4960 10028 1.826720 TGAATGGGGGTAGTACGTGTC 59.173 52.381 0.00 0.00 0.00 3.67
4961 10029 1.941377 TGAATGGGGGTAGTACGTGT 58.059 50.000 0.00 0.00 0.00 4.49
4962 10030 4.675976 TTATGAATGGGGGTAGTACGTG 57.324 45.455 0.00 0.00 0.00 4.49
4963 10031 6.999705 TTATTATGAATGGGGGTAGTACGT 57.000 37.500 0.00 0.00 0.00 3.57
4964 10032 7.881232 ACAATTATTATGAATGGGGGTAGTACG 59.119 37.037 0.00 0.00 0.00 3.67
4965 10033 9.227777 GACAATTATTATGAATGGGGGTAGTAC 57.772 37.037 0.00 0.00 0.00 2.73
4966 10034 8.098286 CGACAATTATTATGAATGGGGGTAGTA 58.902 37.037 0.00 0.00 0.00 1.82
4967 10035 6.940298 CGACAATTATTATGAATGGGGGTAGT 59.060 38.462 0.00 0.00 0.00 2.73
4968 10036 6.128007 GCGACAATTATTATGAATGGGGGTAG 60.128 42.308 0.00 0.00 0.00 3.18
4969 10037 5.708230 GCGACAATTATTATGAATGGGGGTA 59.292 40.000 0.00 0.00 0.00 3.69
4970 10038 4.522789 GCGACAATTATTATGAATGGGGGT 59.477 41.667 0.00 0.00 0.00 4.95
4971 10039 4.522405 TGCGACAATTATTATGAATGGGGG 59.478 41.667 0.00 0.00 0.00 5.40
4972 10040 5.241506 ACTGCGACAATTATTATGAATGGGG 59.758 40.000 0.00 0.00 0.00 4.96
4973 10041 6.317789 ACTGCGACAATTATTATGAATGGG 57.682 37.500 0.00 0.00 0.00 4.00
4974 10042 8.533965 CAAAACTGCGACAATTATTATGAATGG 58.466 33.333 0.00 0.00 0.00 3.16
4975 10043 9.288124 TCAAAACTGCGACAATTATTATGAATG 57.712 29.630 0.00 0.00 0.00 2.67
4976 10044 9.853555 TTCAAAACTGCGACAATTATTATGAAT 57.146 25.926 0.00 0.00 0.00 2.57
4977 10045 9.123709 GTTCAAAACTGCGACAATTATTATGAA 57.876 29.630 0.00 0.00 0.00 2.57
4978 10046 8.511321 AGTTCAAAACTGCGACAATTATTATGA 58.489 29.630 0.00 0.00 41.01 2.15
4979 10047 8.673626 AGTTCAAAACTGCGACAATTATTATG 57.326 30.769 0.00 0.00 41.01 1.90
4982 10050 8.964150 GTTTAGTTCAAAACTGCGACAATTATT 58.036 29.630 2.65 0.00 42.84 1.40
4983 10051 7.593644 GGTTTAGTTCAAAACTGCGACAATTAT 59.406 33.333 2.65 0.00 42.84 1.28
4984 10052 6.913673 GGTTTAGTTCAAAACTGCGACAATTA 59.086 34.615 2.65 0.00 42.84 1.40
4985 10053 5.746721 GGTTTAGTTCAAAACTGCGACAATT 59.253 36.000 2.65 0.00 42.84 2.32
4986 10054 5.163602 TGGTTTAGTTCAAAACTGCGACAAT 60.164 36.000 2.65 0.00 42.84 2.71
4987 10055 4.156190 TGGTTTAGTTCAAAACTGCGACAA 59.844 37.500 2.65 0.00 42.84 3.18
4988 10056 3.690139 TGGTTTAGTTCAAAACTGCGACA 59.310 39.130 2.65 0.00 42.84 4.35
4989 10057 4.281525 TGGTTTAGTTCAAAACTGCGAC 57.718 40.909 2.65 0.00 42.84 5.19
4990 10058 4.966965 TTGGTTTAGTTCAAAACTGCGA 57.033 36.364 2.65 0.00 42.84 5.10
4991 10059 6.254589 TGAAATTGGTTTAGTTCAAAACTGCG 59.745 34.615 2.65 0.00 42.84 5.18
4992 10060 7.532682 TGAAATTGGTTTAGTTCAAAACTGC 57.467 32.000 2.65 0.00 42.84 4.40
4997 10065 9.495572 ACAGTTTTGAAATTGGTTTAGTTCAAA 57.504 25.926 7.60 7.60 44.19 2.69
4998 10066 8.930760 CACAGTTTTGAAATTGGTTTAGTTCAA 58.069 29.630 4.38 0.00 38.01 2.69
4999 10067 8.307483 TCACAGTTTTGAAATTGGTTTAGTTCA 58.693 29.630 4.38 0.00 30.79 3.18
5000 10068 8.696410 TCACAGTTTTGAAATTGGTTTAGTTC 57.304 30.769 4.38 0.00 30.79 3.01
5002 10070 9.744468 GTATCACAGTTTTGAAATTGGTTTAGT 57.256 29.630 4.38 0.00 30.79 2.24
5003 10071 9.965824 AGTATCACAGTTTTGAAATTGGTTTAG 57.034 29.630 4.38 0.00 30.79 1.85
5020 10088 7.013655 CCCTCCAATCCAAAATAAGTATCACAG 59.986 40.741 0.00 0.00 0.00 3.66
5026 10094 6.652205 ACTCCCTCCAATCCAAAATAAGTA 57.348 37.500 0.00 0.00 0.00 2.24
5027 10095 5.536497 ACTCCCTCCAATCCAAAATAAGT 57.464 39.130 0.00 0.00 0.00 2.24
5043 10111 9.249053 CTGTCATACTCATATGTATTACTCCCT 57.751 37.037 1.90 0.00 39.48 4.20
5080 10149 5.693769 TTTAGAAATGGAGGGAGTACTGG 57.306 43.478 0.00 0.00 0.00 4.00
5082 10151 9.907229 CTTTTATTTAGAAATGGAGGGAGTACT 57.093 33.333 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.