Multiple sequence alignment - TraesCS2A01G553200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G553200 chr2A 100.000 3233 0 0 1 3233 758714379 758711147 0.000000e+00 5971
1 TraesCS2A01G553200 chr2A 75.819 1282 237 40 991 2258 758526626 758525404 1.670000e-162 582
2 TraesCS2A01G553200 chr2A 77.617 831 153 20 993 1812 758583322 758584130 1.050000e-129 473
3 TraesCS2A01G553200 chr2A 77.337 353 71 6 1291 1637 758516869 758516520 1.970000e-47 200
4 TraesCS2A01G553200 chr2B 95.426 1421 59 3 980 2398 771924286 771922870 0.000000e+00 2259
5 TraesCS2A01G553200 chr2B 97.074 376 10 1 2859 3233 797605335 797604960 1.640000e-177 632
6 TraesCS2A01G553200 chr2B 76.150 1283 233 43 991 2258 771160321 771159097 9.920000e-170 606
7 TraesCS2A01G553200 chr2B 95.722 374 16 0 2860 3233 753921926 753922299 1.280000e-168 603
8 TraesCS2A01G553200 chr2B 87.127 536 33 15 94 596 771925592 771925060 2.800000e-160 575
9 TraesCS2A01G553200 chr2B 92.222 270 16 2 599 863 771924792 771924523 8.470000e-101 377
10 TraesCS2A01G553200 chr2B 84.085 377 33 12 2427 2792 771412569 771412929 4.000000e-89 339
11 TraesCS2A01G553200 chr2B 84.211 323 37 10 2549 2860 771871150 771870831 5.240000e-78 302
12 TraesCS2A01G553200 chr2B 80.658 243 38 8 2112 2352 771381255 771381490 2.560000e-41 180
13 TraesCS2A01G553200 chr2B 87.121 132 12 3 2159 2288 771505542 771505670 9.350000e-31 145
14 TraesCS2A01G553200 chr2B 94.048 84 5 0 879 962 771924470 771924387 9.410000e-26 128
15 TraesCS2A01G553200 chr2B 78.500 200 36 5 232 424 458251373 458251572 1.220000e-24 124
16 TraesCS2A01G553200 chr2B 76.448 259 43 15 231 477 737766938 737766686 1.220000e-24 124
17 TraesCS2A01G553200 chr2D 95.620 1347 54 2 982 2327 628643133 628644475 0.000000e+00 2156
18 TraesCS2A01G553200 chr2D 97.600 375 9 0 2859 3233 610618038 610618412 0.000000e+00 643
19 TraesCS2A01G553200 chr2D 89.251 521 28 15 94 593 628640647 628641160 7.610000e-176 627
20 TraesCS2A01G553200 chr2D 75.237 1373 269 40 993 2352 628264325 628265639 1.290000e-163 586
21 TraesCS2A01G553200 chr2D 75.159 1256 241 47 991 2213 628016252 628015035 2.860000e-145 525
22 TraesCS2A01G553200 chr2D 75.956 915 173 27 993 1898 628581719 628580843 8.290000e-116 427
23 TraesCS2A01G553200 chr2D 85.379 383 35 10 2427 2792 628576862 628576484 8.470000e-101 377
24 TraesCS2A01G553200 chr2D 93.697 238 15 0 599 836 628641405 628641642 1.100000e-94 357
25 TraesCS2A01G553200 chr2D 72.872 1316 240 65 993 2288 628572750 628571532 8.590000e-91 344
26 TraesCS2A01G553200 chr2D 89.362 235 17 4 2566 2792 628268692 628268926 4.080000e-74 289
27 TraesCS2A01G553200 chr2D 78.643 398 70 11 1954 2345 628259291 628259679 1.930000e-62 250
28 TraesCS2A01G553200 chr2D 78.030 396 72 11 1954 2343 628586920 628586534 5.390000e-58 235
29 TraesCS2A01G553200 chr2D 80.186 323 51 11 2034 2352 628580107 628579794 2.510000e-56 230
30 TraesCS2A01G553200 chr2D 95.122 82 2 2 2316 2395 628655040 628655121 9.410000e-26 128
31 TraesCS2A01G553200 chr2D 76.426 263 44 15 232 482 645730219 645729963 3.390000e-25 126
32 TraesCS2A01G553200 chr5D 97.594 374 9 0 2860 3233 3405068 3404695 2.720000e-180 641
33 TraesCS2A01G553200 chr5D 82.171 258 29 13 2427 2670 15565752 15565498 4.230000e-49 206
34 TraesCS2A01G553200 chr5D 79.902 204 34 5 225 421 446673203 446673406 3.360000e-30 143
35 TraesCS2A01G553200 chr3D 97.305 371 10 0 2860 3230 612635867 612636237 5.890000e-177 630
36 TraesCS2A01G553200 chr3D 96.257 374 13 1 2860 3233 555031815 555031443 2.130000e-171 612
37 TraesCS2A01G553200 chr3D 95.989 374 10 1 2860 3233 556636199 556635831 1.280000e-168 603
38 TraesCS2A01G553200 chr3D 78.607 201 34 8 232 424 171126336 171126535 1.220000e-24 124
39 TraesCS2A01G553200 chr3D 75.758 264 44 15 232 482 171127536 171127280 7.330000e-22 115
40 TraesCS2A01G553200 chr5B 96.533 375 13 0 2859 3233 685995466 685995840 3.540000e-174 621
41 TraesCS2A01G553200 chr3B 96.267 375 14 0 2859 3233 800995172 800995546 1.650000e-172 616
42 TraesCS2A01G553200 chr1A 76.690 858 141 31 984 1811 551671912 551672740 3.860000e-114 422
43 TraesCS2A01G553200 chr1D 76.941 425 77 13 1937 2352 460177562 460177974 4.200000e-54 222
44 TraesCS2A01G553200 chr4D 76.136 264 43 17 232 482 402523306 402523562 1.580000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G553200 chr2A 758711147 758714379 3232 True 5971.000000 5971 100.00000 1 3233 1 chr2A.!!$R3 3232
1 TraesCS2A01G553200 chr2A 758525404 758526626 1222 True 582.000000 582 75.81900 991 2258 1 chr2A.!!$R2 1267
2 TraesCS2A01G553200 chr2A 758583322 758584130 808 False 473.000000 473 77.61700 993 1812 1 chr2A.!!$F1 819
3 TraesCS2A01G553200 chr2B 771922870 771925592 2722 True 834.750000 2259 92.20575 94 2398 4 chr2B.!!$R5 2304
4 TraesCS2A01G553200 chr2B 771159097 771160321 1224 True 606.000000 606 76.15000 991 2258 1 chr2B.!!$R2 1267
5 TraesCS2A01G553200 chr2D 628640647 628644475 3828 False 1046.666667 2156 92.85600 94 2327 3 chr2D.!!$F5 2233
6 TraesCS2A01G553200 chr2D 628015035 628016252 1217 True 525.000000 525 75.15900 991 2213 1 chr2D.!!$R1 1222
7 TraesCS2A01G553200 chr2D 628264325 628268926 4601 False 437.500000 586 82.29950 993 2792 2 chr2D.!!$F4 1799
8 TraesCS2A01G553200 chr2D 628571532 628581719 10187 True 344.500000 427 78.59825 993 2792 4 chr2D.!!$R4 1799
9 TraesCS2A01G553200 chr1A 551671912 551672740 828 False 422.000000 422 76.69000 984 1811 1 chr1A.!!$F1 827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 2650 0.104304 GGGTATTCTGCGACGGTGAT 59.896 55.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2686 8153 0.035317 AGAAATGCAGCTCCACGTGA 59.965 50.0 19.3 2.03 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.861147 ACAAAGACTCCAACCTAGGC 57.139 50.000 9.30 0.00 0.00 3.93
22 23 2.339769 ACAAAGACTCCAACCTAGGCT 58.660 47.619 9.30 0.00 32.04 4.58
23 24 2.711547 ACAAAGACTCCAACCTAGGCTT 59.288 45.455 9.30 0.00 44.39 4.35
24 25 3.077359 CAAAGACTCCAACCTAGGCTTG 58.923 50.000 9.30 12.31 41.58 4.01
25 26 0.615850 AGACTCCAACCTAGGCTTGC 59.384 55.000 9.30 0.81 0.00 4.01
26 27 0.741221 GACTCCAACCTAGGCTTGCG 60.741 60.000 9.30 8.80 0.00 4.85
27 28 1.192146 ACTCCAACCTAGGCTTGCGA 61.192 55.000 9.30 10.63 0.00 5.10
28 29 0.179000 CTCCAACCTAGGCTTGCGAT 59.821 55.000 9.30 0.00 0.00 4.58
29 30 0.618458 TCCAACCTAGGCTTGCGATT 59.382 50.000 9.30 0.00 0.00 3.34
30 31 1.004277 TCCAACCTAGGCTTGCGATTT 59.996 47.619 9.30 0.00 0.00 2.17
31 32 1.818674 CCAACCTAGGCTTGCGATTTT 59.181 47.619 9.30 0.00 0.00 1.82
32 33 2.159379 CCAACCTAGGCTTGCGATTTTC 60.159 50.000 9.30 0.00 0.00 2.29
33 34 1.369625 ACCTAGGCTTGCGATTTTCG 58.630 50.000 9.30 0.00 43.89 3.46
62 63 7.581011 AAAAAGATGCAAAATTAGGCTTACG 57.419 32.000 0.00 0.00 0.00 3.18
63 64 5.897377 AAGATGCAAAATTAGGCTTACGT 57.103 34.783 0.00 0.00 0.00 3.57
64 65 6.995511 AAGATGCAAAATTAGGCTTACGTA 57.004 33.333 0.00 0.00 0.00 3.57
65 66 6.995511 AGATGCAAAATTAGGCTTACGTAA 57.004 33.333 7.94 7.94 0.00 3.18
67 68 5.554822 TGCAAAATTAGGCTTACGTAAGG 57.445 39.130 30.94 16.27 46.39 2.69
68 69 4.396790 TGCAAAATTAGGCTTACGTAAGGG 59.603 41.667 30.94 12.93 46.39 3.95
69 70 4.637091 GCAAAATTAGGCTTACGTAAGGGA 59.363 41.667 30.94 0.91 46.39 4.20
70 71 5.448225 GCAAAATTAGGCTTACGTAAGGGAC 60.448 44.000 30.94 17.44 46.39 4.46
72 73 4.933505 ATTAGGCTTACGTAAGGGACTC 57.066 45.455 30.94 16.80 38.49 3.36
73 74 1.101331 AGGCTTACGTAAGGGACTCG 58.899 55.000 30.94 10.23 38.49 4.18
74 75 1.098050 GGCTTACGTAAGGGACTCGA 58.902 55.000 30.94 0.00 38.49 4.04
75 76 1.680207 GGCTTACGTAAGGGACTCGAT 59.320 52.381 30.94 0.00 38.49 3.59
76 77 2.880890 GGCTTACGTAAGGGACTCGATA 59.119 50.000 30.94 0.00 38.49 2.92
77 78 3.316308 GGCTTACGTAAGGGACTCGATAA 59.684 47.826 30.94 0.00 38.49 1.75
78 79 4.535116 GCTTACGTAAGGGACTCGATAAG 58.465 47.826 30.94 9.14 38.49 1.73
79 80 4.274459 GCTTACGTAAGGGACTCGATAAGA 59.726 45.833 30.94 0.00 38.49 2.10
80 81 5.220931 GCTTACGTAAGGGACTCGATAAGAA 60.221 44.000 30.94 0.00 38.49 2.52
81 82 6.514705 GCTTACGTAAGGGACTCGATAAGAAT 60.515 42.308 30.94 0.00 38.49 2.40
82 83 5.184340 ACGTAAGGGACTCGATAAGAATG 57.816 43.478 0.00 0.00 38.49 2.67
83 84 3.982058 CGTAAGGGACTCGATAAGAATGC 59.018 47.826 0.00 0.00 38.49 3.56
84 85 4.499188 CGTAAGGGACTCGATAAGAATGCA 60.499 45.833 0.00 0.00 38.49 3.96
85 86 4.487714 AAGGGACTCGATAAGAATGCAA 57.512 40.909 0.00 0.00 38.49 4.08
86 87 4.065321 AGGGACTCGATAAGAATGCAAG 57.935 45.455 0.00 0.00 0.00 4.01
87 88 3.706594 AGGGACTCGATAAGAATGCAAGA 59.293 43.478 0.00 0.00 0.00 3.02
88 89 4.346418 AGGGACTCGATAAGAATGCAAGAT 59.654 41.667 0.00 0.00 0.00 2.40
89 90 5.540337 AGGGACTCGATAAGAATGCAAGATA 59.460 40.000 0.00 0.00 0.00 1.98
90 91 6.212388 AGGGACTCGATAAGAATGCAAGATAT 59.788 38.462 0.00 0.00 0.00 1.63
91 92 6.312426 GGGACTCGATAAGAATGCAAGATATG 59.688 42.308 0.00 0.00 0.00 1.78
92 93 6.870965 GGACTCGATAAGAATGCAAGATATGT 59.129 38.462 0.00 0.00 0.00 2.29
96 97 9.416794 CTCGATAAGAATGCAAGATATGTAGTT 57.583 33.333 0.00 0.00 0.00 2.24
208 211 5.163774 GCAGAATGAAGTTAAGAGCAAGGAG 60.164 44.000 0.00 0.00 39.69 3.69
240 256 6.128363 GGGGACTAGTTTTTACGAGTGAATTG 60.128 42.308 0.00 0.00 0.00 2.32
241 257 6.304882 GGACTAGTTTTTACGAGTGAATTGC 58.695 40.000 0.00 0.00 0.00 3.56
389 410 4.394729 TCTTTGACATACCAAACCCACTC 58.605 43.478 0.00 0.00 33.07 3.51
390 411 3.866703 TTGACATACCAAACCCACTCA 57.133 42.857 0.00 0.00 0.00 3.41
426 447 3.003482 GCACCACATGTTAACACCGTTTA 59.997 43.478 11.22 0.00 0.00 2.01
427 448 4.320641 GCACCACATGTTAACACCGTTTAT 60.321 41.667 11.22 0.00 0.00 1.40
430 451 7.184106 CACCACATGTTAACACCGTTTATATC 58.816 38.462 11.22 0.00 0.00 1.63
437 458 7.534282 TGTTAACACCGTTTATATCGACTGTA 58.466 34.615 3.59 0.00 0.00 2.74
576 612 2.602676 GCCTACCCTGCCACCTTCA 61.603 63.158 0.00 0.00 0.00 3.02
589 625 3.389329 GCCACCTTCATCCATCTCTTCTA 59.611 47.826 0.00 0.00 0.00 2.10
597 633 5.777449 TCATCCATCTCTTCTACCTACCAA 58.223 41.667 0.00 0.00 0.00 3.67
637 938 4.218686 GGGTTGTGGGCCTGTGGT 62.219 66.667 4.53 0.00 0.00 4.16
640 941 4.217210 TTGTGGGCCTGTGGTGGG 62.217 66.667 4.53 0.00 0.00 4.61
647 948 4.684134 CCTGTGGTGGGCAAGGGG 62.684 72.222 0.00 0.00 0.00 4.79
721 1023 8.552083 TTTTTCATGATGCTACAGCGATATAT 57.448 30.769 0.00 0.00 45.83 0.86
750 1052 9.607285 CACTACAATTTTTAGCGTTGAAATAGT 57.393 29.630 0.00 0.00 0.00 2.12
817 1123 2.904905 CGTGCCCCTTCCGGATAA 59.095 61.111 4.15 0.00 0.00 1.75
857 2399 2.685364 GCGCAGAAATAACGCCCTA 58.315 52.632 0.30 0.00 46.63 3.53
875 2419 6.036470 CGCCCTATTTTTGAGAATCCTTTTC 58.964 40.000 0.00 0.00 0.00 2.29
876 2420 6.127619 CGCCCTATTTTTGAGAATCCTTTTCT 60.128 38.462 0.00 0.00 0.00 2.52
877 2421 7.577616 CGCCCTATTTTTGAGAATCCTTTTCTT 60.578 37.037 0.00 0.00 0.00 2.52
878 2422 8.097038 GCCCTATTTTTGAGAATCCTTTTCTTT 58.903 33.333 0.00 0.00 0.00 2.52
929 2473 1.098050 CGGCCCATCTTTTTCCTGAG 58.902 55.000 0.00 0.00 0.00 3.35
930 2474 1.614317 CGGCCCATCTTTTTCCTGAGT 60.614 52.381 0.00 0.00 0.00 3.41
935 2479 5.336770 GGCCCATCTTTTTCCTGAGTAAAAG 60.337 44.000 9.46 9.46 40.07 2.27
986 2647 1.700955 ATAGGGTATTCTGCGACGGT 58.299 50.000 0.00 0.00 0.00 4.83
989 2650 0.104304 GGGTATTCTGCGACGGTGAT 59.896 55.000 0.00 0.00 0.00 3.06
1101 2762 2.592308 GGCGCCTCCATCTCCTTT 59.408 61.111 22.15 0.00 34.01 3.11
1206 2873 2.529643 TTCCACCCCGCCTTACCA 60.530 61.111 0.00 0.00 0.00 3.25
1388 3055 4.856607 CGCCCTCTTCGCGGAGAC 62.857 72.222 14.60 2.83 45.80 3.36
1594 3295 2.833631 AGCGCAGTACCAAACTAAGT 57.166 45.000 11.47 0.00 35.76 2.24
1848 3561 3.318839 CCACAGTAATATGGGCATTGTGG 59.681 47.826 6.38 6.38 45.40 4.17
1849 3562 4.206375 CACAGTAATATGGGCATTGTGGA 58.794 43.478 0.00 0.00 32.89 4.02
1850 3563 4.828939 CACAGTAATATGGGCATTGTGGAT 59.171 41.667 0.00 0.00 32.89 3.41
1851 3564 5.048504 CACAGTAATATGGGCATTGTGGATC 60.049 44.000 0.00 0.00 32.89 3.36
1869 3582 2.443394 CGAGGCAGGGGAAGGCATA 61.443 63.158 0.00 0.00 0.00 3.14
1888 3601 4.623647 GCATAATTGGGATGTTTGTGCCTT 60.624 41.667 0.00 0.00 33.11 4.35
1932 3672 3.506398 TGGACATGACACAGTTCTCCTA 58.494 45.455 0.00 0.00 0.00 2.94
1945 3685 9.656323 ACACAGTTCTCCTAAGATATACCATTA 57.344 33.333 0.00 0.00 0.00 1.90
1966 3706 1.822990 GACGAGACAATGGTGGGAGTA 59.177 52.381 0.00 0.00 0.00 2.59
1967 3707 2.232941 GACGAGACAATGGTGGGAGTAA 59.767 50.000 0.00 0.00 0.00 2.24
1983 3723 0.107831 GTAACACCCAGTGGCAGACA 59.892 55.000 2.61 0.00 37.94 3.41
2003 3746 7.546358 CAGACAGAGAAGACAATCTCAATAGT 58.454 38.462 7.04 0.66 46.73 2.12
2005 3748 8.034215 AGACAGAGAAGACAATCTCAATAGTTG 58.966 37.037 7.04 0.00 46.73 3.16
2071 4437 0.317160 TCAGTGCGGAAACTCATCGT 59.683 50.000 0.00 0.00 0.00 3.73
2141 4507 0.721718 GTATGTGCTTCACGGCTCAC 59.278 55.000 0.00 0.00 38.28 3.51
2194 4560 4.099727 TCCCACCATCGTTATTATCGTCAA 59.900 41.667 0.00 0.00 0.00 3.18
2254 4620 7.039644 GCTAGCTACCTCCTTATCTTCATTGTA 60.040 40.741 7.70 0.00 0.00 2.41
2372 7662 3.056536 TGCTAGTTCAATCGCTTCTCAGT 60.057 43.478 0.00 0.00 0.00 3.41
2393 7684 7.445121 TCAGTGTTATCTGATTTCTGTGAGTT 58.555 34.615 0.00 0.00 39.20 3.01
2394 7685 8.585018 TCAGTGTTATCTGATTTCTGTGAGTTA 58.415 33.333 0.00 0.00 39.20 2.24
2395 7686 9.376075 CAGTGTTATCTGATTTCTGTGAGTTAT 57.624 33.333 0.00 0.00 37.61 1.89
2396 7687 9.593134 AGTGTTATCTGATTTCTGTGAGTTATC 57.407 33.333 0.00 0.00 0.00 1.75
2397 7688 9.593134 GTGTTATCTGATTTCTGTGAGTTATCT 57.407 33.333 0.00 0.00 0.00 1.98
2398 7689 9.591792 TGTTATCTGATTTCTGTGAGTTATCTG 57.408 33.333 0.00 0.00 0.00 2.90
2399 7690 9.809096 GTTATCTGATTTCTGTGAGTTATCTGA 57.191 33.333 0.00 0.00 0.00 3.27
2402 7693 7.495901 TCTGATTTCTGTGAGTTATCTGATCC 58.504 38.462 0.00 0.00 0.00 3.36
2403 7694 6.586344 TGATTTCTGTGAGTTATCTGATCCC 58.414 40.000 0.00 0.00 0.00 3.85
2404 7695 6.385176 TGATTTCTGTGAGTTATCTGATCCCT 59.615 38.462 0.00 0.00 0.00 4.20
2405 7696 7.565029 TGATTTCTGTGAGTTATCTGATCCCTA 59.435 37.037 0.00 0.00 0.00 3.53
2406 7697 6.968263 TTCTGTGAGTTATCTGATCCCTAG 57.032 41.667 0.00 0.00 0.00 3.02
2407 7698 6.019656 TCTGTGAGTTATCTGATCCCTAGT 57.980 41.667 0.00 0.00 0.00 2.57
2408 7699 6.436027 TCTGTGAGTTATCTGATCCCTAGTT 58.564 40.000 0.00 0.00 0.00 2.24
2409 7700 6.547880 TCTGTGAGTTATCTGATCCCTAGTTC 59.452 42.308 0.00 0.00 0.00 3.01
2410 7701 6.194967 TGTGAGTTATCTGATCCCTAGTTCA 58.805 40.000 0.00 0.00 0.00 3.18
2411 7702 6.667848 TGTGAGTTATCTGATCCCTAGTTCAA 59.332 38.462 0.00 0.00 0.00 2.69
2412 7703 7.345653 TGTGAGTTATCTGATCCCTAGTTCAAT 59.654 37.037 0.00 0.00 0.00 2.57
2413 7704 7.870445 GTGAGTTATCTGATCCCTAGTTCAATC 59.130 40.741 0.00 0.00 0.00 2.67
2414 7705 7.015682 TGAGTTATCTGATCCCTAGTTCAATCC 59.984 40.741 0.00 0.00 0.00 3.01
2415 7706 6.846505 AGTTATCTGATCCCTAGTTCAATCCA 59.153 38.462 0.00 0.00 0.00 3.41
2416 7707 7.348274 AGTTATCTGATCCCTAGTTCAATCCAA 59.652 37.037 0.00 0.00 0.00 3.53
2417 7708 5.620738 TCTGATCCCTAGTTCAATCCAAG 57.379 43.478 0.00 0.00 0.00 3.61
2418 7709 4.133078 CTGATCCCTAGTTCAATCCAAGC 58.867 47.826 0.00 0.00 0.00 4.01
2419 7710 3.523157 TGATCCCTAGTTCAATCCAAGCA 59.477 43.478 0.00 0.00 0.00 3.91
2420 7711 3.350219 TCCCTAGTTCAATCCAAGCAC 57.650 47.619 0.00 0.00 0.00 4.40
2421 7712 2.912956 TCCCTAGTTCAATCCAAGCACT 59.087 45.455 0.00 0.00 0.00 4.40
2422 7713 3.012518 CCCTAGTTCAATCCAAGCACTG 58.987 50.000 0.00 0.00 0.00 3.66
2423 7714 3.560025 CCCTAGTTCAATCCAAGCACTGT 60.560 47.826 0.00 0.00 0.00 3.55
2424 7715 4.323485 CCCTAGTTCAATCCAAGCACTGTA 60.323 45.833 0.00 0.00 0.00 2.74
2425 7716 4.872691 CCTAGTTCAATCCAAGCACTGTAG 59.127 45.833 0.00 0.00 0.00 2.74
2434 7725 4.669700 TCCAAGCACTGTAGTACCTTCTA 58.330 43.478 0.00 0.00 0.00 2.10
2470 7763 3.574284 TTTTCATCCAAGCATGAACGG 57.426 42.857 0.00 0.00 41.52 4.44
2481 7774 0.370273 CATGAACGGCGCACTACTTC 59.630 55.000 10.83 2.32 0.00 3.01
2494 7787 5.168569 CGCACTACTTCCACTTGATTCTTA 58.831 41.667 0.00 0.00 0.00 2.10
2506 7802 7.890127 TCCACTTGATTCTTATTGATCCACTTT 59.110 33.333 0.00 0.00 0.00 2.66
2508 7804 9.565213 CACTTGATTCTTATTGATCCACTTTTC 57.435 33.333 0.00 0.00 0.00 2.29
2510 7806 8.648698 TTGATTCTTATTGATCCACTTTTCCA 57.351 30.769 0.00 0.00 0.00 3.53
2517 7813 2.040278 TGATCCACTTTTCCAGTCCCTG 59.960 50.000 0.00 0.00 30.92 4.45
2522 7818 0.954452 CTTTTCCAGTCCCTGTGTGC 59.046 55.000 0.00 0.00 0.00 4.57
2528 7824 0.464373 CAGTCCCTGTGTGCTGTTGT 60.464 55.000 0.00 0.00 0.00 3.32
2530 7826 1.070758 AGTCCCTGTGTGCTGTTGTAG 59.929 52.381 0.00 0.00 0.00 2.74
2546 7842 1.339631 TGTAGCAGGCGTTGGCTAAAT 60.340 47.619 5.79 0.00 43.61 1.40
2547 7843 2.093394 TGTAGCAGGCGTTGGCTAAATA 60.093 45.455 5.79 0.00 43.61 1.40
2550 7848 1.743394 GCAGGCGTTGGCTAAATACTT 59.257 47.619 0.00 0.00 36.44 2.24
2560 7858 2.294512 GGCTAAATACTTGCATCCTGGC 59.705 50.000 0.00 0.00 0.00 4.85
2569 7867 0.761187 TGCATCCTGGCTGATCTACC 59.239 55.000 0.86 0.00 34.04 3.18
2570 7868 0.761187 GCATCCTGGCTGATCTACCA 59.239 55.000 0.86 7.02 0.00 3.25
2571 7869 1.350351 GCATCCTGGCTGATCTACCAT 59.650 52.381 0.86 0.00 34.82 3.55
2572 7870 2.874861 GCATCCTGGCTGATCTACCATG 60.875 54.545 0.86 5.81 34.82 3.66
2574 7872 1.764723 TCCTGGCTGATCTACCATGTG 59.235 52.381 7.60 1.66 34.82 3.21
2575 7873 1.202734 CCTGGCTGATCTACCATGTGG 60.203 57.143 7.60 0.00 42.17 4.17
2618 8078 8.689061 TGAATGATCCCTCTTTCATACAATTTG 58.311 33.333 0.00 0.00 39.38 2.32
2662 8123 5.893824 TGAGTAGGTAGAGATGAGCATTTGA 59.106 40.000 0.00 0.00 0.00 2.69
2673 8134 7.176165 AGAGATGAGCATTTGAGTGAAATTTGA 59.824 33.333 0.00 0.00 31.41 2.69
2675 8136 8.311836 AGATGAGCATTTGAGTGAAATTTGATT 58.688 29.630 0.00 0.00 31.41 2.57
2686 8153 9.246670 TGAGTGAAATTTGATTAGTGATCCATT 57.753 29.630 0.00 0.00 33.60 3.16
2792 8260 3.695606 GGACCTCAGAGTGCGCCA 61.696 66.667 4.18 0.00 0.00 5.69
2793 8261 2.581354 GACCTCAGAGTGCGCCAT 59.419 61.111 4.18 0.00 0.00 4.40
2794 8262 1.812922 GACCTCAGAGTGCGCCATG 60.813 63.158 4.18 0.00 0.00 3.66
2795 8263 2.513204 CCTCAGAGTGCGCCATGG 60.513 66.667 7.63 7.63 0.00 3.66
2796 8264 2.513204 CTCAGAGTGCGCCATGGG 60.513 66.667 15.13 4.77 0.00 4.00
2797 8265 3.002583 TCAGAGTGCGCCATGGGA 61.003 61.111 15.13 0.00 0.00 4.37
2798 8266 2.821366 CAGAGTGCGCCATGGGAC 60.821 66.667 15.13 0.00 0.00 4.46
2813 8281 2.790433 TGGGACAACACATTAAGGAGC 58.210 47.619 0.00 0.00 31.92 4.70
2814 8282 2.375174 TGGGACAACACATTAAGGAGCT 59.625 45.455 0.00 0.00 31.92 4.09
2815 8283 3.585289 TGGGACAACACATTAAGGAGCTA 59.415 43.478 0.00 0.00 31.92 3.32
2816 8284 3.939592 GGGACAACACATTAAGGAGCTAC 59.060 47.826 0.00 0.00 0.00 3.58
2817 8285 4.323562 GGGACAACACATTAAGGAGCTACT 60.324 45.833 0.00 0.00 0.00 2.57
2818 8286 4.870991 GGACAACACATTAAGGAGCTACTC 59.129 45.833 0.00 0.00 0.00 2.59
2819 8287 5.479306 GACAACACATTAAGGAGCTACTCA 58.521 41.667 0.00 0.00 31.08 3.41
2839 8307 4.442706 TCAGTTGTTGTGACTTCTCCTTC 58.557 43.478 0.00 0.00 0.00 3.46
2841 8309 4.635765 CAGTTGTTGTGACTTCTCCTTCAA 59.364 41.667 0.00 0.00 0.00 2.69
2848 8316 4.590647 TGTGACTTCTCCTTCAAGTCTGAT 59.409 41.667 12.50 0.00 46.81 2.90
2849 8317 4.928615 GTGACTTCTCCTTCAAGTCTGATG 59.071 45.833 12.50 0.00 46.81 3.07
2853 8321 2.834549 TCTCCTTCAAGTCTGATGTCCC 59.165 50.000 0.00 0.00 0.00 4.46
2859 8327 0.836400 AAGTCTGATGTCCCGTGGGT 60.836 55.000 4.53 0.00 36.47 4.51
2860 8328 1.218316 GTCTGATGTCCCGTGGGTC 59.782 63.158 4.53 0.00 36.47 4.46
2861 8329 1.229051 TCTGATGTCCCGTGGGTCA 60.229 57.895 7.33 7.33 37.68 4.02
2863 8331 2.244117 CTGATGTCCCGTGGGTCAGG 62.244 65.000 13.64 3.30 36.82 3.86
2869 8337 4.016706 CCGTGGGTCAGGGTGGAC 62.017 72.222 0.00 0.00 35.03 4.02
2870 8338 3.238497 CGTGGGTCAGGGTGGACA 61.238 66.667 0.00 0.00 39.59 4.02
2871 8339 2.430367 GTGGGTCAGGGTGGACAC 59.570 66.667 0.00 0.00 41.65 3.67
2872 8340 3.238497 TGGGTCAGGGTGGACACG 61.238 66.667 0.00 0.00 44.26 4.49
2874 8342 3.239253 GGTCAGGGTGGACACGGT 61.239 66.667 0.00 0.00 39.59 4.83
2875 8343 2.342648 GTCAGGGTGGACACGGTC 59.657 66.667 0.00 0.00 37.73 4.79
2922 8390 3.411351 CGTTTGGACCGGACGCTG 61.411 66.667 9.46 0.00 0.00 5.18
2923 8391 3.047877 GTTTGGACCGGACGCTGG 61.048 66.667 9.46 3.50 35.68 4.85
2947 8415 4.452733 GGAGCGGACCGGACCAAG 62.453 72.222 22.85 8.55 0.00 3.61
2951 8419 4.003788 CGGACCGGACCAAGCAGT 62.004 66.667 22.85 0.00 0.00 4.40
2953 8421 2.426023 GACCGGACCAAGCAGTGT 59.574 61.111 9.46 0.00 0.00 3.55
2955 8423 2.100879 GACCGGACCAAGCAGTGTCT 62.101 60.000 9.46 0.00 0.00 3.41
2956 8424 1.374758 CCGGACCAAGCAGTGTCTC 60.375 63.158 0.00 0.00 0.00 3.36
2957 8425 1.734477 CGGACCAAGCAGTGTCTCG 60.734 63.158 0.00 0.00 0.00 4.04
2958 8426 1.374758 GGACCAAGCAGTGTCTCGG 60.375 63.158 0.00 0.00 0.00 4.63
2959 8427 1.374758 GACCAAGCAGTGTCTCGGG 60.375 63.158 0.00 0.00 0.00 5.14
2960 8428 2.743928 CCAAGCAGTGTCTCGGGC 60.744 66.667 0.00 0.00 0.00 6.13
2961 8429 2.743928 CAAGCAGTGTCTCGGGCC 60.744 66.667 0.00 0.00 0.00 5.80
2962 8430 2.925170 AAGCAGTGTCTCGGGCCT 60.925 61.111 0.84 0.00 0.00 5.19
2963 8431 3.245668 AAGCAGTGTCTCGGGCCTG 62.246 63.158 4.71 4.71 0.00 4.85
2964 8432 4.008933 GCAGTGTCTCGGGCCTGT 62.009 66.667 12.43 0.00 0.00 4.00
2965 8433 2.743718 CAGTGTCTCGGGCCTGTT 59.256 61.111 12.43 0.00 0.00 3.16
2966 8434 1.071471 CAGTGTCTCGGGCCTGTTT 59.929 57.895 12.43 0.00 0.00 2.83
2967 8435 1.071471 AGTGTCTCGGGCCTGTTTG 59.929 57.895 12.43 3.56 0.00 2.93
2968 8436 2.281484 TGTCTCGGGCCTGTTTGC 60.281 61.111 12.43 1.45 0.00 3.68
2969 8437 2.281484 GTCTCGGGCCTGTTTGCA 60.281 61.111 12.43 0.00 0.00 4.08
2970 8438 2.032528 TCTCGGGCCTGTTTGCAG 59.967 61.111 12.43 0.49 42.22 4.41
2978 8446 2.429930 CTGTTTGCAGGGACCGGA 59.570 61.111 9.46 0.00 39.01 5.14
2979 8447 1.966451 CTGTTTGCAGGGACCGGAC 60.966 63.158 9.46 0.00 39.01 4.79
2980 8448 2.671963 GTTTGCAGGGACCGGACC 60.672 66.667 15.20 15.20 0.00 4.46
3011 12641 4.180946 CACGAGCCGGACCGAGAG 62.181 72.222 17.49 6.27 0.00 3.20
3023 12653 3.188965 CGAGAGGACCGTCAGGAC 58.811 66.667 0.00 0.00 41.02 3.85
3031 12661 4.760047 CCGTCAGGACCGGCCAAG 62.760 72.222 15.92 8.79 41.02 3.61
3032 12662 3.691342 CGTCAGGACCGGCCAAGA 61.691 66.667 15.92 10.67 40.02 3.02
3033 12663 2.990479 GTCAGGACCGGCCAAGAT 59.010 61.111 15.92 0.00 40.02 2.40
3035 12665 0.759346 GTCAGGACCGGCCAAGATAT 59.241 55.000 15.92 0.00 40.02 1.63
3045 12675 2.924185 CCAAGATATGGGCAGAGCG 58.076 57.895 0.00 0.00 46.27 5.03
3046 12676 1.233285 CCAAGATATGGGCAGAGCGC 61.233 60.000 0.00 0.00 46.27 5.92
3065 12695 3.898509 CTCTGGAGCTCCGGCGAG 61.899 72.222 33.44 27.83 42.21 5.03
3073 12703 4.821589 CTCCGGCGAGGGCTGTTC 62.822 72.222 9.30 0.00 44.37 3.18
3076 12706 2.892425 CGGCGAGGGCTGTTCATC 60.892 66.667 0.00 0.00 40.80 2.92
3078 12708 2.892425 GCGAGGGCTGTTCATCGG 60.892 66.667 8.59 0.00 35.76 4.18
3079 12709 2.202932 CGAGGGCTGTTCATCGGG 60.203 66.667 0.00 0.00 0.00 5.14
3080 12710 2.190578 GAGGGCTGTTCATCGGGG 59.809 66.667 0.00 0.00 0.00 5.73
3081 12711 2.285368 AGGGCTGTTCATCGGGGA 60.285 61.111 0.00 0.00 0.00 4.81
3082 12712 2.124695 GGGCTGTTCATCGGGGAC 60.125 66.667 0.00 0.00 0.00 4.46
3096 12726 1.686325 GGGGACGCAATGCTAGAGGA 61.686 60.000 2.94 0.00 0.00 3.71
3098 12728 1.576356 GGACGCAATGCTAGAGGAAG 58.424 55.000 2.94 0.00 0.00 3.46
3100 12730 0.807667 ACGCAATGCTAGAGGAAGCG 60.808 55.000 15.87 15.87 45.85 4.68
3101 12731 1.645997 GCAATGCTAGAGGAAGCGC 59.354 57.895 0.00 0.00 45.85 5.92
3102 12732 1.091771 GCAATGCTAGAGGAAGCGCA 61.092 55.000 11.47 0.00 45.85 6.09
3118 12748 1.874562 CGCAGCTCGTTGAAAAGATG 58.125 50.000 0.00 0.00 32.17 2.90
3120 12750 2.723010 CGCAGCTCGTTGAAAAGATGTC 60.723 50.000 0.00 0.00 31.65 3.06
3121 12751 2.481952 GCAGCTCGTTGAAAAGATGTCT 59.518 45.455 0.00 0.00 31.65 3.41
3122 12752 3.666374 GCAGCTCGTTGAAAAGATGTCTG 60.666 47.826 0.00 0.00 31.65 3.51
3123 12753 3.070018 AGCTCGTTGAAAAGATGTCTGG 58.930 45.455 0.00 0.00 0.00 3.86
3124 12754 2.160417 GCTCGTTGAAAAGATGTCTGGG 59.840 50.000 0.00 0.00 0.00 4.45
3125 12755 3.664107 CTCGTTGAAAAGATGTCTGGGA 58.336 45.455 0.00 0.00 0.00 4.37
3126 12756 3.664107 TCGTTGAAAAGATGTCTGGGAG 58.336 45.455 0.00 0.00 0.00 4.30
3128 12758 3.416156 GTTGAAAAGATGTCTGGGAGCT 58.584 45.455 0.00 0.00 0.00 4.09
3129 12759 3.795688 TGAAAAGATGTCTGGGAGCTT 57.204 42.857 0.00 0.00 0.00 3.74
3130 12760 3.679389 TGAAAAGATGTCTGGGAGCTTC 58.321 45.455 0.00 0.00 0.00 3.86
3131 12761 3.072915 TGAAAAGATGTCTGGGAGCTTCA 59.927 43.478 0.00 0.00 0.00 3.02
3134 12764 2.544721 AGATGTCTGGGAGCTTCAGAA 58.455 47.619 18.31 11.40 42.13 3.02
3136 12766 2.015456 TGTCTGGGAGCTTCAGAAGA 57.985 50.000 14.86 5.01 42.13 2.87
3138 12768 2.037772 TGTCTGGGAGCTTCAGAAGAAC 59.962 50.000 14.86 6.43 42.13 3.01
3139 12769 1.625818 TCTGGGAGCTTCAGAAGAACC 59.374 52.381 14.86 14.44 38.20 3.62
3140 12770 1.349026 CTGGGAGCTTCAGAAGAACCA 59.651 52.381 14.86 15.49 34.36 3.67
3141 12771 1.349026 TGGGAGCTTCAGAAGAACCAG 59.651 52.381 14.86 0.00 0.00 4.00
3142 12772 1.625818 GGGAGCTTCAGAAGAACCAGA 59.374 52.381 14.86 0.00 0.00 3.86
3143 12773 2.354604 GGGAGCTTCAGAAGAACCAGAG 60.355 54.545 14.86 0.00 0.00 3.35
3144 12774 2.354604 GGAGCTTCAGAAGAACCAGAGG 60.355 54.545 14.86 0.00 0.00 3.69
3145 12775 1.627834 AGCTTCAGAAGAACCAGAGGG 59.372 52.381 14.86 0.00 41.29 4.30
3146 12776 1.625818 GCTTCAGAAGAACCAGAGGGA 59.374 52.381 14.86 0.00 38.05 4.20
3148 12778 1.270907 TCAGAAGAACCAGAGGGAGC 58.729 55.000 0.00 0.00 38.05 4.70
3150 12780 2.043115 TCAGAAGAACCAGAGGGAGCTA 59.957 50.000 0.00 0.00 38.05 3.32
3151 12781 2.167487 CAGAAGAACCAGAGGGAGCTAC 59.833 54.545 0.00 0.00 38.05 3.58
3153 12783 2.559381 AGAACCAGAGGGAGCTACAT 57.441 50.000 0.00 0.00 38.05 2.29
3154 12784 2.114616 AGAACCAGAGGGAGCTACATG 58.885 52.381 0.00 0.00 38.05 3.21
3157 12787 0.387202 CCAGAGGGAGCTACATGACG 59.613 60.000 0.00 0.00 35.59 4.35
3158 12788 1.393603 CAGAGGGAGCTACATGACGA 58.606 55.000 0.00 0.00 0.00 4.20
3160 12790 2.028130 AGAGGGAGCTACATGACGAAG 58.972 52.381 0.00 0.00 0.00 3.79
3161 12791 2.025155 GAGGGAGCTACATGACGAAGA 58.975 52.381 0.00 0.00 0.00 2.87
3162 12792 2.427453 GAGGGAGCTACATGACGAAGAA 59.573 50.000 0.00 0.00 0.00 2.52
3163 12793 2.428890 AGGGAGCTACATGACGAAGAAG 59.571 50.000 0.00 0.00 0.00 2.85
3164 12794 2.427453 GGGAGCTACATGACGAAGAAGA 59.573 50.000 0.00 0.00 0.00 2.87
3165 12795 3.119101 GGGAGCTACATGACGAAGAAGAA 60.119 47.826 0.00 0.00 0.00 2.52
3166 12796 3.860536 GGAGCTACATGACGAAGAAGAAC 59.139 47.826 0.00 0.00 0.00 3.01
3167 12797 4.486090 GAGCTACATGACGAAGAAGAACA 58.514 43.478 0.00 0.00 0.00 3.18
3169 12799 3.368236 GCTACATGACGAAGAAGAACACC 59.632 47.826 0.00 0.00 0.00 4.16
3171 12801 1.726791 CATGACGAAGAAGAACACCGG 59.273 52.381 0.00 0.00 0.00 5.28
3172 12802 1.034356 TGACGAAGAAGAACACCGGA 58.966 50.000 9.46 0.00 0.00 5.14
3173 12803 1.000607 TGACGAAGAAGAACACCGGAG 60.001 52.381 9.46 1.26 0.00 4.63
3186 12816 4.292178 CGGAGGGAGCTCATCGGC 62.292 72.222 17.19 5.08 0.00 5.54
3188 12818 3.219928 GAGGGAGCTCATCGGCGA 61.220 66.667 13.87 13.87 37.29 5.54
3189 12819 3.492311 GAGGGAGCTCATCGGCGAC 62.492 68.421 13.76 0.00 37.29 5.19
3202 12832 2.506217 GCGACGAATCTGGCACGA 60.506 61.111 0.00 0.00 0.00 4.35
3204 12834 2.497092 CGACGAATCTGGCACGACG 61.497 63.158 2.05 4.15 38.43 5.12
3206 12836 3.554692 CGAATCTGGCACGACGGC 61.555 66.667 0.00 0.00 41.67 5.68
3227 12857 2.277084 CGGTGAACGGAGATAAAAGGG 58.723 52.381 0.00 0.00 39.42 3.95
3228 12858 2.093869 CGGTGAACGGAGATAAAAGGGA 60.094 50.000 0.00 0.00 39.42 4.20
3229 12859 3.268330 GGTGAACGGAGATAAAAGGGAC 58.732 50.000 0.00 0.00 0.00 4.46
3230 12860 2.928116 GTGAACGGAGATAAAAGGGACG 59.072 50.000 0.00 0.00 0.00 4.79
3231 12861 2.827322 TGAACGGAGATAAAAGGGACGA 59.173 45.455 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.138468 AGCCTAGGTTGGAGTCTTTGTTT 59.862 43.478 11.31 0.00 0.00 2.83
1 2 2.711547 AGCCTAGGTTGGAGTCTTTGTT 59.288 45.455 11.31 0.00 0.00 2.83
2 3 2.339769 AGCCTAGGTTGGAGTCTTTGT 58.660 47.619 11.31 0.00 0.00 2.83
3 4 3.077359 CAAGCCTAGGTTGGAGTCTTTG 58.923 50.000 11.31 0.00 37.38 2.77
4 5 2.553247 GCAAGCCTAGGTTGGAGTCTTT 60.553 50.000 19.36 0.00 40.77 2.52
5 6 1.003696 GCAAGCCTAGGTTGGAGTCTT 59.996 52.381 19.36 7.67 40.77 3.01
6 7 0.615850 GCAAGCCTAGGTTGGAGTCT 59.384 55.000 19.36 2.44 40.77 3.24
7 8 0.741221 CGCAAGCCTAGGTTGGAGTC 60.741 60.000 19.36 7.38 40.77 3.36
8 9 1.192146 TCGCAAGCCTAGGTTGGAGT 61.192 55.000 19.36 0.00 40.77 3.85
9 10 0.179000 ATCGCAAGCCTAGGTTGGAG 59.821 55.000 19.36 10.86 40.77 3.86
10 11 0.618458 AATCGCAAGCCTAGGTTGGA 59.382 50.000 19.36 15.79 40.77 3.53
11 12 1.463674 AAATCGCAAGCCTAGGTTGG 58.536 50.000 19.36 10.29 40.77 3.77
12 13 2.476185 CGAAAATCGCAAGCCTAGGTTG 60.476 50.000 11.31 14.06 42.93 3.77
13 14 1.737793 CGAAAATCGCAAGCCTAGGTT 59.262 47.619 11.31 0.00 31.14 3.50
14 15 1.369625 CGAAAATCGCAAGCCTAGGT 58.630 50.000 11.31 0.00 31.14 3.08
38 39 7.151976 ACGTAAGCCTAATTTTGCATCTTTTT 58.848 30.769 0.00 0.00 45.62 1.94
39 40 6.687604 ACGTAAGCCTAATTTTGCATCTTTT 58.312 32.000 0.00 0.00 45.62 2.27
40 41 6.267496 ACGTAAGCCTAATTTTGCATCTTT 57.733 33.333 0.00 0.00 45.62 2.52
41 42 5.897377 ACGTAAGCCTAATTTTGCATCTT 57.103 34.783 0.00 0.00 45.62 2.40
42 43 6.038271 CCTTACGTAAGCCTAATTTTGCATCT 59.962 38.462 26.57 0.00 45.62 2.90
43 44 6.199393 CCTTACGTAAGCCTAATTTTGCATC 58.801 40.000 26.57 0.00 45.62 3.91
44 45 5.067283 CCCTTACGTAAGCCTAATTTTGCAT 59.933 40.000 26.57 0.00 45.62 3.96
45 46 4.396790 CCCTTACGTAAGCCTAATTTTGCA 59.603 41.667 26.57 0.00 45.62 4.08
46 47 4.637091 TCCCTTACGTAAGCCTAATTTTGC 59.363 41.667 26.57 0.00 45.62 3.68
47 48 5.878669 AGTCCCTTACGTAAGCCTAATTTTG 59.121 40.000 26.57 11.54 45.62 2.44
48 49 6.058553 AGTCCCTTACGTAAGCCTAATTTT 57.941 37.500 26.57 6.28 45.62 1.82
49 50 5.668471 GAGTCCCTTACGTAAGCCTAATTT 58.332 41.667 26.57 9.87 45.62 1.82
50 51 4.202090 CGAGTCCCTTACGTAAGCCTAATT 60.202 45.833 26.57 11.26 45.62 1.40
51 52 3.317430 CGAGTCCCTTACGTAAGCCTAAT 59.683 47.826 26.57 14.28 45.62 1.73
52 53 2.684881 CGAGTCCCTTACGTAAGCCTAA 59.315 50.000 26.57 10.55 45.62 2.69
53 54 2.092968 TCGAGTCCCTTACGTAAGCCTA 60.093 50.000 26.57 12.79 45.62 3.93
54 55 1.101331 CGAGTCCCTTACGTAAGCCT 58.899 55.000 26.57 20.55 45.62 4.58
55 56 1.098050 TCGAGTCCCTTACGTAAGCC 58.902 55.000 26.57 16.84 45.62 4.35
56 57 4.274459 TCTTATCGAGTCCCTTACGTAAGC 59.726 45.833 26.57 14.93 45.62 3.09
58 59 6.732154 CATTCTTATCGAGTCCCTTACGTAA 58.268 40.000 7.94 7.94 0.00 3.18
59 60 5.278169 GCATTCTTATCGAGTCCCTTACGTA 60.278 44.000 0.00 0.00 0.00 3.57
60 61 4.499357 GCATTCTTATCGAGTCCCTTACGT 60.499 45.833 0.00 0.00 0.00 3.57
61 62 3.982058 GCATTCTTATCGAGTCCCTTACG 59.018 47.826 0.00 0.00 0.00 3.18
62 63 4.945246 TGCATTCTTATCGAGTCCCTTAC 58.055 43.478 0.00 0.00 0.00 2.34
63 64 5.362717 TCTTGCATTCTTATCGAGTCCCTTA 59.637 40.000 0.00 0.00 0.00 2.69
64 65 4.162320 TCTTGCATTCTTATCGAGTCCCTT 59.838 41.667 0.00 0.00 0.00 3.95
65 66 3.706594 TCTTGCATTCTTATCGAGTCCCT 59.293 43.478 0.00 0.00 0.00 4.20
66 67 4.060038 TCTTGCATTCTTATCGAGTCCC 57.940 45.455 0.00 0.00 0.00 4.46
67 68 6.870965 ACATATCTTGCATTCTTATCGAGTCC 59.129 38.462 0.00 0.00 0.00 3.85
68 69 7.881643 ACATATCTTGCATTCTTATCGAGTC 57.118 36.000 0.00 0.00 0.00 3.36
69 70 8.580720 ACTACATATCTTGCATTCTTATCGAGT 58.419 33.333 0.00 0.00 0.00 4.18
70 71 8.978564 ACTACATATCTTGCATTCTTATCGAG 57.021 34.615 0.00 0.00 0.00 4.04
71 72 9.411801 GAACTACATATCTTGCATTCTTATCGA 57.588 33.333 0.00 0.00 0.00 3.59
72 73 9.416794 AGAACTACATATCTTGCATTCTTATCG 57.583 33.333 0.00 0.00 0.00 2.92
75 76 9.678941 CGTAGAACTACATATCTTGCATTCTTA 57.321 33.333 11.65 0.00 35.87 2.10
76 77 8.198109 ACGTAGAACTACATATCTTGCATTCTT 58.802 33.333 11.65 0.00 35.87 2.52
77 78 7.717568 ACGTAGAACTACATATCTTGCATTCT 58.282 34.615 11.65 0.00 35.87 2.40
78 79 7.932120 ACGTAGAACTACATATCTTGCATTC 57.068 36.000 11.65 0.00 35.87 2.67
79 80 7.590322 CGTACGTAGAACTACATATCTTGCATT 59.410 37.037 7.22 0.00 35.87 3.56
80 81 7.076362 CGTACGTAGAACTACATATCTTGCAT 58.924 38.462 7.22 0.00 35.87 3.96
81 82 6.037500 ACGTACGTAGAACTACATATCTTGCA 59.962 38.462 21.41 0.00 35.87 4.08
82 83 6.356452 CACGTACGTAGAACTACATATCTTGC 59.644 42.308 22.34 0.00 35.87 4.01
83 84 6.849811 CCACGTACGTAGAACTACATATCTTG 59.150 42.308 22.34 2.04 35.87 3.02
84 85 6.512415 GCCACGTACGTAGAACTACATATCTT 60.512 42.308 22.34 0.00 35.87 2.40
85 86 5.049818 GCCACGTACGTAGAACTACATATCT 60.050 44.000 22.34 0.00 35.87 1.98
86 87 5.142962 GCCACGTACGTAGAACTACATATC 58.857 45.833 22.34 0.00 35.87 1.63
87 88 4.576053 TGCCACGTACGTAGAACTACATAT 59.424 41.667 22.34 0.00 35.87 1.78
88 89 3.938334 TGCCACGTACGTAGAACTACATA 59.062 43.478 22.34 0.00 35.87 2.29
89 90 2.749076 TGCCACGTACGTAGAACTACAT 59.251 45.455 22.34 0.00 35.87 2.29
90 91 2.150390 TGCCACGTACGTAGAACTACA 58.850 47.619 22.34 8.60 35.87 2.74
91 92 2.900122 TGCCACGTACGTAGAACTAC 57.100 50.000 22.34 6.09 0.00 2.73
92 93 3.073678 TCTTGCCACGTACGTAGAACTA 58.926 45.455 22.34 6.82 0.00 2.24
96 97 2.032550 GCTATCTTGCCACGTACGTAGA 59.967 50.000 22.34 19.87 0.00 2.59
208 211 3.345508 AAAAACTAGTCCCCGTCATCC 57.654 47.619 0.00 0.00 0.00 3.51
250 266 8.203485 TGGCAAATCTGAAAGTTAACTTCAATT 58.797 29.630 20.78 14.06 34.61 2.32
251 267 7.653311 GTGGCAAATCTGAAAGTTAACTTCAAT 59.347 33.333 20.78 6.03 34.61 2.57
260 280 3.030291 TGTGGTGGCAAATCTGAAAGTT 58.970 40.909 0.00 0.00 33.76 2.66
382 403 1.544825 CGTGGACCTGATGAGTGGGT 61.545 60.000 0.00 0.00 35.89 4.51
389 410 3.716195 TGCCCCGTGGACCTGATG 61.716 66.667 0.00 0.00 0.00 3.07
390 411 3.717294 GTGCCCCGTGGACCTGAT 61.717 66.667 0.00 0.00 0.00 2.90
542 565 1.457455 GGCAGGAGAGAGAGAGGGG 60.457 68.421 0.00 0.00 0.00 4.79
546 569 0.553819 GGGTAGGCAGGAGAGAGAGA 59.446 60.000 0.00 0.00 0.00 3.10
576 612 6.325286 GTCTTTGGTAGGTAGAAGAGATGGAT 59.675 42.308 0.00 0.00 0.00 3.41
589 625 4.593206 TGTCATTCTCAGTCTTTGGTAGGT 59.407 41.667 0.00 0.00 0.00 3.08
597 633 2.304180 CACCCCTGTCATTCTCAGTCTT 59.696 50.000 0.00 0.00 0.00 3.01
637 938 0.178947 CCAAAACTACCCCTTGCCCA 60.179 55.000 0.00 0.00 0.00 5.36
640 941 1.873270 CGCCCAAAACTACCCCTTGC 61.873 60.000 0.00 0.00 0.00 4.01
647 948 2.340328 CCCAGCCGCCCAAAACTAC 61.340 63.158 0.00 0.00 0.00 2.73
721 1023 9.953697 ATTTCAACGCTAAAAATTGTAGTGTAA 57.046 25.926 9.55 2.22 40.53 2.41
851 2348 5.582689 AAAGGATTCTCAAAAATAGGGCG 57.417 39.130 0.00 0.00 0.00 6.13
881 2425 5.714806 GGAAGATGGGGTTATCTGACAAAAA 59.285 40.000 0.00 0.00 37.48 1.94
929 2473 1.719709 GCGATGGCCGGTCTTTTAC 59.280 57.895 7.97 0.00 39.04 2.01
930 2474 4.211986 GCGATGGCCGGTCTTTTA 57.788 55.556 7.97 0.00 39.04 1.52
949 2514 6.120220 ACCCTATTTTAGTATGTGTTGGAGC 58.880 40.000 0.00 0.00 0.00 4.70
986 2647 2.821685 CCATCTTCCGGCCGATCA 59.178 61.111 30.73 7.08 0.00 2.92
1085 2746 1.884926 CGAAAGGAGATGGAGGCGC 60.885 63.158 0.00 0.00 0.00 6.53
1091 2752 0.462759 GAGGTGGCGAAAGGAGATGG 60.463 60.000 0.00 0.00 0.00 3.51
1093 2754 1.258445 ACGAGGTGGCGAAAGGAGAT 61.258 55.000 0.00 0.00 34.83 2.75
1125 2786 3.562635 CGGAAGCGTTGGAGGAAC 58.437 61.111 0.00 0.00 0.00 3.62
1201 2868 1.198759 GCTGAGGGGTGAGGTGGTAA 61.199 60.000 0.00 0.00 0.00 2.85
1594 3295 2.452600 AAGAAGACAAAGGCCACCAA 57.547 45.000 5.01 0.00 0.00 3.67
1727 3439 2.693074 CCAACCTGCAAACCAGTAAAGT 59.307 45.455 0.00 0.00 40.06 2.66
1833 3546 3.415212 CTCGATCCACAATGCCCATATT 58.585 45.455 0.00 0.00 0.00 1.28
1848 3561 2.825264 CCTTCCCCTGCCTCGATC 59.175 66.667 0.00 0.00 0.00 3.69
1849 3562 3.483869 GCCTTCCCCTGCCTCGAT 61.484 66.667 0.00 0.00 0.00 3.59
1850 3563 2.889521 TATGCCTTCCCCTGCCTCGA 62.890 60.000 0.00 0.00 0.00 4.04
1851 3564 1.983119 TTATGCCTTCCCCTGCCTCG 61.983 60.000 0.00 0.00 0.00 4.63
1869 3582 2.971330 TGAAGGCACAAACATCCCAATT 59.029 40.909 0.00 0.00 0.00 2.32
1888 3601 0.107643 TGGCCGACTTTGTCATGTGA 59.892 50.000 0.00 0.00 32.09 3.58
1932 3672 8.307483 CCATTGTCTCGTCTAATGGTATATCTT 58.693 37.037 0.00 0.00 43.61 2.40
1945 3685 0.898320 CTCCCACCATTGTCTCGTCT 59.102 55.000 0.00 0.00 0.00 4.18
1966 3706 1.149174 CTGTCTGCCACTGGGTGTT 59.851 57.895 0.00 0.00 36.17 3.32
1967 3707 1.762522 CTCTGTCTGCCACTGGGTGT 61.763 60.000 0.00 0.00 36.17 4.16
1983 3723 6.817641 CAGCAACTATTGAGATTGTCTTCTCT 59.182 38.462 3.41 0.00 42.22 3.10
2003 3746 0.674581 CATGAACGAGGAGCCAGCAA 60.675 55.000 0.00 0.00 0.00 3.91
2005 3748 1.817099 CCATGAACGAGGAGCCAGC 60.817 63.158 0.00 0.00 0.00 4.85
2071 4437 2.400399 CGTGAAACAACCTAGCTCGAA 58.600 47.619 0.00 0.00 35.74 3.71
2194 4560 4.510571 AGTTTACCACTTGACACTTTCGT 58.489 39.130 0.00 0.00 27.32 3.85
2254 4620 6.524734 TCAGACAAGTTGTGTGATAGTGATT 58.475 36.000 26.94 0.00 44.30 2.57
2327 4694 4.469657 AGCATAGAAAAGACAACACCCAA 58.530 39.130 0.00 0.00 0.00 4.12
2372 7662 9.591792 CAGATAACTCACAGAAATCAGATAACA 57.408 33.333 0.00 0.00 0.00 2.41
2393 7684 6.239714 GCTTGGATTGAACTAGGGATCAGATA 60.240 42.308 0.00 0.00 0.00 1.98
2394 7685 5.455899 GCTTGGATTGAACTAGGGATCAGAT 60.456 44.000 0.00 0.00 0.00 2.90
2395 7686 4.141620 GCTTGGATTGAACTAGGGATCAGA 60.142 45.833 0.00 0.00 0.00 3.27
2396 7687 4.133078 GCTTGGATTGAACTAGGGATCAG 58.867 47.826 0.00 0.00 0.00 2.90
2397 7688 3.523157 TGCTTGGATTGAACTAGGGATCA 59.477 43.478 0.00 0.00 0.00 2.92
2398 7689 3.879892 GTGCTTGGATTGAACTAGGGATC 59.120 47.826 0.00 0.00 0.00 3.36
2399 7690 3.525199 AGTGCTTGGATTGAACTAGGGAT 59.475 43.478 0.00 0.00 0.00 3.85
2400 7691 2.912956 AGTGCTTGGATTGAACTAGGGA 59.087 45.455 0.00 0.00 0.00 4.20
2401 7692 3.012518 CAGTGCTTGGATTGAACTAGGG 58.987 50.000 0.00 0.00 0.00 3.53
2402 7693 3.679389 ACAGTGCTTGGATTGAACTAGG 58.321 45.455 0.00 0.00 0.00 3.02
2403 7694 5.482908 ACTACAGTGCTTGGATTGAACTAG 58.517 41.667 0.00 0.00 0.00 2.57
2404 7695 5.483685 ACTACAGTGCTTGGATTGAACTA 57.516 39.130 0.00 0.00 0.00 2.24
2405 7696 4.357918 ACTACAGTGCTTGGATTGAACT 57.642 40.909 0.00 0.00 0.00 3.01
2406 7697 4.392138 GGTACTACAGTGCTTGGATTGAAC 59.608 45.833 0.00 0.00 0.00 3.18
2407 7698 4.286032 AGGTACTACAGTGCTTGGATTGAA 59.714 41.667 0.00 0.00 36.02 2.69
2408 7699 3.838317 AGGTACTACAGTGCTTGGATTGA 59.162 43.478 0.00 0.00 36.02 2.57
2409 7700 4.207891 AGGTACTACAGTGCTTGGATTG 57.792 45.455 0.00 0.00 36.02 2.67
2410 7701 4.532521 AGAAGGTACTACAGTGCTTGGATT 59.467 41.667 0.00 0.00 38.49 3.01
2411 7702 4.097418 AGAAGGTACTACAGTGCTTGGAT 58.903 43.478 0.00 0.00 38.49 3.41
2412 7703 3.507411 AGAAGGTACTACAGTGCTTGGA 58.493 45.455 0.00 0.00 38.49 3.53
2413 7704 3.963428 AGAAGGTACTACAGTGCTTGG 57.037 47.619 0.00 0.00 38.49 3.61
2414 7705 4.142138 CCCTAGAAGGTACTACAGTGCTTG 60.142 50.000 0.00 0.00 38.49 4.01
2415 7706 4.024670 CCCTAGAAGGTACTACAGTGCTT 58.975 47.826 0.00 0.00 38.49 3.91
2416 7707 3.268856 TCCCTAGAAGGTACTACAGTGCT 59.731 47.826 0.00 0.00 38.49 4.40
2417 7708 3.629087 TCCCTAGAAGGTACTACAGTGC 58.371 50.000 0.00 0.00 38.49 4.40
2418 7709 5.697067 AGATCCCTAGAAGGTACTACAGTG 58.303 45.833 0.00 0.00 38.49 3.66
2419 7710 5.998128 AGATCCCTAGAAGGTACTACAGT 57.002 43.478 0.00 0.00 38.49 3.55
2420 7711 7.319052 TCTAGATCCCTAGAAGGTACTACAG 57.681 44.000 0.00 0.00 46.09 2.74
2461 7754 1.635663 AAGTAGTGCGCCGTTCATGC 61.636 55.000 4.18 0.00 0.00 4.06
2468 7761 1.374252 AAGTGGAAGTAGTGCGCCG 60.374 57.895 4.18 0.00 0.00 6.46
2469 7762 0.320421 TCAAGTGGAAGTAGTGCGCC 60.320 55.000 4.18 0.00 0.00 6.53
2470 7763 1.726853 ATCAAGTGGAAGTAGTGCGC 58.273 50.000 0.00 0.00 0.00 6.09
2481 7774 7.636150 AAGTGGATCAATAAGAATCAAGTGG 57.364 36.000 0.00 0.00 0.00 4.00
2494 7787 3.334881 AGGGACTGGAAAAGTGGATCAAT 59.665 43.478 0.00 0.00 40.07 2.57
2510 7806 1.070758 CTACAACAGCACACAGGGACT 59.929 52.381 0.00 0.00 43.88 3.85
2522 7818 1.868997 CCAACGCCTGCTACAACAG 59.131 57.895 0.00 0.00 37.42 3.16
2528 7824 2.169769 AGTATTTAGCCAACGCCTGCTA 59.830 45.455 0.00 0.00 39.00 3.49
2530 7826 1.379527 AGTATTTAGCCAACGCCTGC 58.620 50.000 0.00 0.00 34.57 4.85
2536 7832 4.202050 CCAGGATGCAAGTATTTAGCCAAC 60.202 45.833 0.00 0.00 31.97 3.77
2537 7833 3.953612 CCAGGATGCAAGTATTTAGCCAA 59.046 43.478 0.00 0.00 31.97 4.52
2538 7834 3.554934 CCAGGATGCAAGTATTTAGCCA 58.445 45.455 0.00 0.00 31.97 4.75
2546 7842 2.121948 AGATCAGCCAGGATGCAAGTA 58.878 47.619 0.00 0.00 31.97 2.24
2547 7843 0.917533 AGATCAGCCAGGATGCAAGT 59.082 50.000 0.00 0.00 31.97 3.16
2550 7848 0.761187 GGTAGATCAGCCAGGATGCA 59.239 55.000 0.00 0.00 31.97 3.96
2575 7873 3.502191 TTCACTTTGTTGGTGCTGAAC 57.498 42.857 0.00 0.00 34.97 3.18
2576 7874 3.698539 TCATTCACTTTGTTGGTGCTGAA 59.301 39.130 0.00 0.00 34.97 3.02
2627 8087 6.413052 TCTCTACCTACTCACGTCAATACTT 58.587 40.000 0.00 0.00 0.00 2.24
2629 8089 6.482641 TCATCTCTACCTACTCACGTCAATAC 59.517 42.308 0.00 0.00 0.00 1.89
2631 8091 5.437946 TCATCTCTACCTACTCACGTCAAT 58.562 41.667 0.00 0.00 0.00 2.57
2635 8095 3.207778 GCTCATCTCTACCTACTCACGT 58.792 50.000 0.00 0.00 0.00 4.49
2637 8097 5.782893 AATGCTCATCTCTACCTACTCAC 57.217 43.478 0.00 0.00 0.00 3.51
2662 8123 9.246670 TGAATGGATCACTAATCAAATTTCACT 57.753 29.630 0.00 0.00 35.96 3.41
2686 8153 0.035317 AGAAATGCAGCTCCACGTGA 59.965 50.000 19.30 2.03 0.00 4.35
2689 8156 0.725686 CAGAGAAATGCAGCTCCACG 59.274 55.000 9.59 0.00 0.00 4.94
2714 8181 3.721035 AGAAAACTTGCCATCAACAAGC 58.279 40.909 3.52 0.00 46.81 4.01
2792 8260 3.010584 AGCTCCTTAATGTGTTGTCCCAT 59.989 43.478 0.00 0.00 0.00 4.00
2793 8261 2.375174 AGCTCCTTAATGTGTTGTCCCA 59.625 45.455 0.00 0.00 0.00 4.37
2794 8262 3.073274 AGCTCCTTAATGTGTTGTCCC 57.927 47.619 0.00 0.00 0.00 4.46
2795 8263 4.833390 AGTAGCTCCTTAATGTGTTGTCC 58.167 43.478 0.00 0.00 0.00 4.02
2796 8264 5.479306 TGAGTAGCTCCTTAATGTGTTGTC 58.521 41.667 0.00 0.00 0.00 3.18
2797 8265 5.012148 ACTGAGTAGCTCCTTAATGTGTTGT 59.988 40.000 0.00 0.00 0.00 3.32
2798 8266 5.482908 ACTGAGTAGCTCCTTAATGTGTTG 58.517 41.667 0.00 0.00 0.00 3.33
2799 8267 5.746990 ACTGAGTAGCTCCTTAATGTGTT 57.253 39.130 0.00 0.00 0.00 3.32
2800 8268 5.012148 ACAACTGAGTAGCTCCTTAATGTGT 59.988 40.000 0.00 0.00 0.00 3.72
2801 8269 5.482908 ACAACTGAGTAGCTCCTTAATGTG 58.517 41.667 0.00 0.00 0.00 3.21
2802 8270 5.746990 ACAACTGAGTAGCTCCTTAATGT 57.253 39.130 0.00 0.00 0.00 2.71
2803 8271 5.934625 ACAACAACTGAGTAGCTCCTTAATG 59.065 40.000 0.00 0.00 0.00 1.90
2804 8272 5.934625 CACAACAACTGAGTAGCTCCTTAAT 59.065 40.000 0.00 0.00 0.00 1.40
2805 8273 5.069914 TCACAACAACTGAGTAGCTCCTTAA 59.930 40.000 0.00 0.00 0.00 1.85
2806 8274 4.587262 TCACAACAACTGAGTAGCTCCTTA 59.413 41.667 0.00 0.00 0.00 2.69
2807 8275 3.388024 TCACAACAACTGAGTAGCTCCTT 59.612 43.478 0.00 0.00 0.00 3.36
2808 8276 2.965831 TCACAACAACTGAGTAGCTCCT 59.034 45.455 0.00 0.00 0.00 3.69
2809 8277 3.060602 GTCACAACAACTGAGTAGCTCC 58.939 50.000 0.00 0.00 0.00 4.70
2810 8278 3.983741 AGTCACAACAACTGAGTAGCTC 58.016 45.455 0.00 0.00 0.00 4.09
2811 8279 4.100189 AGAAGTCACAACAACTGAGTAGCT 59.900 41.667 0.00 0.00 0.00 3.32
2812 8280 4.372656 AGAAGTCACAACAACTGAGTAGC 58.627 43.478 0.00 0.00 0.00 3.58
2813 8281 4.985409 GGAGAAGTCACAACAACTGAGTAG 59.015 45.833 0.00 0.00 0.00 2.57
2814 8282 4.649674 AGGAGAAGTCACAACAACTGAGTA 59.350 41.667 0.00 0.00 0.00 2.59
2815 8283 3.452627 AGGAGAAGTCACAACAACTGAGT 59.547 43.478 0.00 0.00 0.00 3.41
2816 8284 4.065321 AGGAGAAGTCACAACAACTGAG 57.935 45.455 0.00 0.00 0.00 3.35
2817 8285 4.081142 TGAAGGAGAAGTCACAACAACTGA 60.081 41.667 0.00 0.00 0.00 3.41
2818 8286 4.191544 TGAAGGAGAAGTCACAACAACTG 58.808 43.478 0.00 0.00 0.00 3.16
2819 8287 4.487714 TGAAGGAGAAGTCACAACAACT 57.512 40.909 0.00 0.00 0.00 3.16
2839 8307 0.391661 CCCACGGGACATCAGACTTG 60.392 60.000 0.00 0.00 37.50 3.16
2841 8309 1.229209 ACCCACGGGACATCAGACT 60.229 57.895 9.72 0.00 38.96 3.24
2853 8321 3.238497 TGTCCACCCTGACCCACG 61.238 66.667 0.00 0.00 34.25 4.94
2905 8373 3.411351 CAGCGTCCGGTCCAAACG 61.411 66.667 8.18 8.18 39.33 3.60
2906 8374 3.047877 CCAGCGTCCGGTCCAAAC 61.048 66.667 0.00 0.00 0.00 2.93
2935 8403 2.358737 CACTGCTTGGTCCGGTCC 60.359 66.667 11.20 11.20 0.00 4.46
2936 8404 1.668151 GACACTGCTTGGTCCGGTC 60.668 63.158 0.00 0.00 0.00 4.79
2938 8406 1.374758 GAGACACTGCTTGGTCCGG 60.375 63.158 0.00 0.00 34.58 5.14
2939 8407 1.734477 CGAGACACTGCTTGGTCCG 60.734 63.158 0.00 0.00 34.58 4.79
2940 8408 1.374758 CCGAGACACTGCTTGGTCC 60.375 63.158 0.00 0.00 35.14 4.46
2941 8409 1.374758 CCCGAGACACTGCTTGGTC 60.375 63.158 0.00 0.00 37.69 4.02
2942 8410 2.743718 CCCGAGACACTGCTTGGT 59.256 61.111 0.00 0.00 37.69 3.67
2943 8411 2.743928 GCCCGAGACACTGCTTGG 60.744 66.667 0.00 0.00 38.89 3.61
2944 8412 2.743928 GGCCCGAGACACTGCTTG 60.744 66.667 0.00 0.00 0.00 4.01
2945 8413 2.925170 AGGCCCGAGACACTGCTT 60.925 61.111 0.00 0.00 0.00 3.91
2946 8414 3.699894 CAGGCCCGAGACACTGCT 61.700 66.667 0.00 0.00 0.00 4.24
2947 8415 3.537206 AACAGGCCCGAGACACTGC 62.537 63.158 0.00 0.00 34.40 4.40
2949 8417 1.071471 CAAACAGGCCCGAGACACT 59.929 57.895 0.00 0.00 0.00 3.55
2950 8418 2.617274 GCAAACAGGCCCGAGACAC 61.617 63.158 0.00 0.00 0.00 3.67
2951 8419 2.281484 GCAAACAGGCCCGAGACA 60.281 61.111 0.00 0.00 0.00 3.41
2953 8421 2.032528 CTGCAAACAGGCCCGAGA 59.967 61.111 0.00 0.00 40.48 4.04
2961 8429 1.966451 GTCCGGTCCCTGCAAACAG 60.966 63.158 0.00 0.00 44.05 3.16
2962 8430 2.112297 GTCCGGTCCCTGCAAACA 59.888 61.111 0.00 0.00 0.00 2.83
2963 8431 2.671963 GGTCCGGTCCCTGCAAAC 60.672 66.667 6.44 0.00 0.00 2.93
2964 8432 4.323477 CGGTCCGGTCCCTGCAAA 62.323 66.667 12.41 0.00 0.00 3.68
3005 12635 2.045242 TCCTGACGGTCCTCTCGG 60.045 66.667 5.55 0.00 0.00 4.63
3015 12645 1.672854 TATCTTGGCCGGTCCTGACG 61.673 60.000 2.12 0.00 35.26 4.35
3016 12646 0.759346 ATATCTTGGCCGGTCCTGAC 59.241 55.000 2.12 0.00 35.26 3.51
3017 12647 0.758734 CATATCTTGGCCGGTCCTGA 59.241 55.000 2.12 1.20 35.26 3.86
3018 12648 0.250467 CCATATCTTGGCCGGTCCTG 60.250 60.000 2.12 0.00 39.09 3.86
3019 12649 1.418908 CCCATATCTTGGCCGGTCCT 61.419 60.000 2.12 0.00 44.97 3.85
3021 12651 1.600916 GCCCATATCTTGGCCGGTC 60.601 63.158 0.00 0.00 44.97 4.79
3022 12652 2.515901 GCCCATATCTTGGCCGGT 59.484 61.111 1.90 0.00 44.97 5.28
3026 12656 1.233285 CGCTCTGCCCATATCTTGGC 61.233 60.000 0.00 0.00 44.97 4.52
3027 12657 1.233285 GCGCTCTGCCCATATCTTGG 61.233 60.000 0.00 0.00 46.00 3.61
3028 12658 1.563435 CGCGCTCTGCCCATATCTTG 61.563 60.000 5.56 0.00 42.08 3.02
3029 12659 1.301244 CGCGCTCTGCCCATATCTT 60.301 57.895 5.56 0.00 42.08 2.40
3031 12661 3.418068 GCGCGCTCTGCCCATATC 61.418 66.667 26.67 0.00 42.08 1.63
3032 12662 3.873026 GAGCGCGCTCTGCCCATAT 62.873 63.158 44.82 17.93 42.08 1.78
3033 12663 4.592192 GAGCGCGCTCTGCCCATA 62.592 66.667 44.82 0.00 42.08 2.74
3048 12678 3.898509 CTCGCCGGAGCTCCAGAG 61.899 72.222 31.67 28.17 36.60 3.35
3059 12689 2.892425 GATGAACAGCCCTCGCCG 60.892 66.667 0.00 0.00 34.57 6.46
3060 12690 2.892425 CGATGAACAGCCCTCGCC 60.892 66.667 0.00 0.00 34.57 5.54
3061 12691 2.892425 CCGATGAACAGCCCTCGC 60.892 66.667 0.00 0.00 0.00 5.03
3062 12692 2.202932 CCCGATGAACAGCCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
3063 12693 2.190578 CCCCGATGAACAGCCCTC 59.809 66.667 0.00 0.00 0.00 4.30
3064 12694 2.285368 TCCCCGATGAACAGCCCT 60.285 61.111 0.00 0.00 0.00 5.19
3065 12695 2.124695 GTCCCCGATGAACAGCCC 60.125 66.667 0.00 0.00 0.00 5.19
3066 12696 2.511600 CGTCCCCGATGAACAGCC 60.512 66.667 0.00 0.00 35.63 4.85
3069 12699 1.024046 CATTGCGTCCCCGATGAACA 61.024 55.000 0.00 0.00 35.63 3.18
3070 12700 1.721487 CATTGCGTCCCCGATGAAC 59.279 57.895 0.00 0.00 35.63 3.18
3071 12701 2.112198 GCATTGCGTCCCCGATGAA 61.112 57.895 0.00 0.00 35.63 2.57
3073 12703 1.224069 CTAGCATTGCGTCCCCGATG 61.224 60.000 2.38 0.00 35.63 3.84
3074 12704 1.069765 CTAGCATTGCGTCCCCGAT 59.930 57.895 2.38 0.00 35.63 4.18
3076 12706 1.592669 CTCTAGCATTGCGTCCCCG 60.593 63.158 2.38 0.00 37.07 5.73
3078 12708 0.178068 TTCCTCTAGCATTGCGTCCC 59.822 55.000 2.38 0.00 0.00 4.46
3079 12709 1.576356 CTTCCTCTAGCATTGCGTCC 58.424 55.000 2.38 0.00 0.00 4.79
3080 12710 0.933796 GCTTCCTCTAGCATTGCGTC 59.066 55.000 2.38 0.00 40.89 5.19
3081 12711 0.807667 CGCTTCCTCTAGCATTGCGT 60.808 55.000 2.38 0.00 41.28 5.24
3082 12712 1.930100 CGCTTCCTCTAGCATTGCG 59.070 57.895 2.38 0.00 41.28 4.85
3083 12713 1.091771 TGCGCTTCCTCTAGCATTGC 61.092 55.000 9.73 0.00 41.28 3.56
3085 12715 0.813210 GCTGCGCTTCCTCTAGCATT 60.813 55.000 9.73 0.00 41.28 3.56
3086 12716 1.227497 GCTGCGCTTCCTCTAGCAT 60.227 57.895 9.73 0.00 41.28 3.79
3087 12717 2.185350 GCTGCGCTTCCTCTAGCA 59.815 61.111 9.73 0.00 41.28 3.49
3089 12719 1.299014 CGAGCTGCGCTTCCTCTAG 60.299 63.158 9.73 0.00 39.88 2.43
3091 12721 2.936912 AACGAGCTGCGCTTCCTCT 61.937 57.895 9.73 0.00 46.04 3.69
3092 12722 2.433318 AACGAGCTGCGCTTCCTC 60.433 61.111 9.73 10.53 46.04 3.71
3096 12726 0.040958 CTTTTCAACGAGCTGCGCTT 60.041 50.000 9.73 0.00 46.04 4.68
3098 12728 0.166814 ATCTTTTCAACGAGCTGCGC 59.833 50.000 0.00 0.00 46.04 6.09
3100 12730 2.481952 AGACATCTTTTCAACGAGCTGC 59.518 45.455 0.00 0.00 0.00 5.25
3101 12731 3.120408 CCAGACATCTTTTCAACGAGCTG 60.120 47.826 0.00 0.00 0.00 4.24
3102 12732 3.070018 CCAGACATCTTTTCAACGAGCT 58.930 45.455 0.00 0.00 0.00 4.09
3104 12734 3.664107 TCCCAGACATCTTTTCAACGAG 58.336 45.455 0.00 0.00 0.00 4.18
3105 12735 3.664107 CTCCCAGACATCTTTTCAACGA 58.336 45.455 0.00 0.00 0.00 3.85
3106 12736 2.160417 GCTCCCAGACATCTTTTCAACG 59.840 50.000 0.00 0.00 0.00 4.10
3107 12737 3.416156 AGCTCCCAGACATCTTTTCAAC 58.584 45.455 0.00 0.00 0.00 3.18
3108 12738 3.795688 AGCTCCCAGACATCTTTTCAA 57.204 42.857 0.00 0.00 0.00 2.69
3110 12740 3.679389 TGAAGCTCCCAGACATCTTTTC 58.321 45.455 0.00 0.00 0.00 2.29
3111 12741 3.328931 TCTGAAGCTCCCAGACATCTTTT 59.671 43.478 13.01 0.00 35.89 2.27
3112 12742 2.909006 TCTGAAGCTCCCAGACATCTTT 59.091 45.455 13.01 0.00 35.89 2.52
3113 12743 2.544721 TCTGAAGCTCCCAGACATCTT 58.455 47.619 13.01 0.00 35.89 2.40
3114 12744 2.244486 TCTGAAGCTCCCAGACATCT 57.756 50.000 13.01 0.00 35.89 2.90
3116 12746 2.544721 TCTTCTGAAGCTCCCAGACAT 58.455 47.619 15.75 0.00 40.05 3.06
3117 12747 2.015456 TCTTCTGAAGCTCCCAGACA 57.985 50.000 15.75 5.81 40.05 3.41
3118 12748 2.614229 GGTTCTTCTGAAGCTCCCAGAC 60.614 54.545 15.75 7.40 44.58 3.51
3120 12750 2.106477 GGTTCTTCTGAAGCTCCCAG 57.894 55.000 12.54 9.18 44.58 4.45
3128 12758 1.625818 GCTCCCTCTGGTTCTTCTGAA 59.374 52.381 0.00 0.00 0.00 3.02
3129 12759 1.203237 AGCTCCCTCTGGTTCTTCTGA 60.203 52.381 0.00 0.00 0.00 3.27
3130 12760 1.274712 AGCTCCCTCTGGTTCTTCTG 58.725 55.000 0.00 0.00 0.00 3.02
3131 12761 2.225394 TGTAGCTCCCTCTGGTTCTTCT 60.225 50.000 0.00 0.00 0.00 2.85
3134 12764 2.114616 CATGTAGCTCCCTCTGGTTCT 58.885 52.381 0.00 0.00 0.00 3.01
3136 12766 1.834263 GTCATGTAGCTCCCTCTGGTT 59.166 52.381 0.00 0.00 0.00 3.67
3138 12768 0.387202 CGTCATGTAGCTCCCTCTGG 59.613 60.000 0.00 0.00 0.00 3.86
3139 12769 1.393603 TCGTCATGTAGCTCCCTCTG 58.606 55.000 0.00 0.00 0.00 3.35
3140 12770 2.028130 CTTCGTCATGTAGCTCCCTCT 58.972 52.381 0.00 0.00 0.00 3.69
3141 12771 2.025155 TCTTCGTCATGTAGCTCCCTC 58.975 52.381 0.00 0.00 0.00 4.30
3142 12772 2.145397 TCTTCGTCATGTAGCTCCCT 57.855 50.000 0.00 0.00 0.00 4.20
3143 12773 2.427453 TCTTCTTCGTCATGTAGCTCCC 59.573 50.000 0.00 0.00 0.00 4.30
3144 12774 3.784701 TCTTCTTCGTCATGTAGCTCC 57.215 47.619 0.00 0.00 0.00 4.70
3145 12775 4.324936 GTGTTCTTCTTCGTCATGTAGCTC 59.675 45.833 0.00 0.00 0.00 4.09
3146 12776 4.238514 GTGTTCTTCTTCGTCATGTAGCT 58.761 43.478 0.00 0.00 0.00 3.32
3148 12778 3.608506 CGGTGTTCTTCTTCGTCATGTAG 59.391 47.826 0.00 0.00 0.00 2.74
3150 12780 2.404215 CGGTGTTCTTCTTCGTCATGT 58.596 47.619 0.00 0.00 0.00 3.21
3151 12781 1.726791 CCGGTGTTCTTCTTCGTCATG 59.273 52.381 0.00 0.00 0.00 3.07
3153 12783 1.000607 CTCCGGTGTTCTTCTTCGTCA 60.001 52.381 0.00 0.00 0.00 4.35
3154 12784 1.669211 CCTCCGGTGTTCTTCTTCGTC 60.669 57.143 0.00 0.00 0.00 4.20
3157 12787 0.974383 TCCCTCCGGTGTTCTTCTTC 59.026 55.000 0.00 0.00 0.00 2.87
3158 12788 0.977395 CTCCCTCCGGTGTTCTTCTT 59.023 55.000 0.00 0.00 0.00 2.52
3160 12790 1.079057 GCTCCCTCCGGTGTTCTTC 60.079 63.158 0.00 0.00 0.00 2.87
3161 12791 1.536662 AGCTCCCTCCGGTGTTCTT 60.537 57.895 0.00 0.00 0.00 2.52
3162 12792 1.985116 GAGCTCCCTCCGGTGTTCT 60.985 63.158 0.87 0.00 32.02 3.01
3163 12793 1.617947 ATGAGCTCCCTCCGGTGTTC 61.618 60.000 12.15 0.00 37.29 3.18
3164 12794 1.613630 ATGAGCTCCCTCCGGTGTT 60.614 57.895 12.15 0.00 37.29 3.32
3165 12795 2.039624 ATGAGCTCCCTCCGGTGT 59.960 61.111 12.15 0.00 37.29 4.16
3166 12796 2.818132 GATGAGCTCCCTCCGGTG 59.182 66.667 12.15 0.00 37.29 4.94
3167 12797 2.835431 CGATGAGCTCCCTCCGGT 60.835 66.667 12.15 0.00 37.29 5.28
3169 12799 4.292178 GCCGATGAGCTCCCTCCG 62.292 72.222 12.15 9.01 37.29 4.63
3171 12801 3.219928 TCGCCGATGAGCTCCCTC 61.220 66.667 12.15 7.29 38.62 4.30
3172 12802 3.532155 GTCGCCGATGAGCTCCCT 61.532 66.667 12.15 0.00 0.00 4.20
3173 12803 4.933064 CGTCGCCGATGAGCTCCC 62.933 72.222 12.15 1.94 35.63 4.30
3174 12804 2.685387 ATTCGTCGCCGATGAGCTCC 62.685 60.000 12.15 0.00 43.80 4.70
3175 12805 1.272114 GATTCGTCGCCGATGAGCTC 61.272 60.000 9.22 6.82 43.80 4.09
3176 12806 1.299468 GATTCGTCGCCGATGAGCT 60.299 57.895 9.22 1.28 43.80 4.09
3178 12808 0.936764 CCAGATTCGTCGCCGATGAG 60.937 60.000 9.22 0.00 43.80 2.90
3179 12809 1.065764 CCAGATTCGTCGCCGATGA 59.934 57.895 4.61 4.61 43.80 2.92
3181 12811 2.279517 GCCAGATTCGTCGCCGAT 60.280 61.111 0.00 0.00 43.80 4.18
3182 12812 3.754530 TGCCAGATTCGTCGCCGA 61.755 61.111 0.00 0.00 42.41 5.54
3183 12813 3.554692 GTGCCAGATTCGTCGCCG 61.555 66.667 0.00 0.00 0.00 6.46
3185 12815 2.506217 TCGTGCCAGATTCGTCGC 60.506 61.111 0.00 0.00 0.00 5.19
3186 12816 2.497092 CGTCGTGCCAGATTCGTCG 61.497 63.158 0.00 0.00 0.00 5.12
3188 12818 2.126071 CCGTCGTGCCAGATTCGT 60.126 61.111 0.00 0.00 0.00 3.85
3189 12819 3.554692 GCCGTCGTGCCAGATTCG 61.555 66.667 0.00 0.00 0.00 3.34
3208 12838 3.268330 GTCCCTTTTATCTCCGTTCACC 58.732 50.000 0.00 0.00 0.00 4.02
3209 12839 2.928116 CGTCCCTTTTATCTCCGTTCAC 59.072 50.000 0.00 0.00 0.00 3.18
3210 12840 2.827322 TCGTCCCTTTTATCTCCGTTCA 59.173 45.455 0.00 0.00 0.00 3.18
3212 12842 3.242549 GTCGTCCCTTTTATCTCCGTT 57.757 47.619 0.00 0.00 0.00 4.44
3213 12843 2.955477 GTCGTCCCTTTTATCTCCGT 57.045 50.000 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.