Multiple sequence alignment - TraesCS2A01G552700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G552700 chr2A 100.000 4705 0 0 1 4705 758529215 758533919 0.000000e+00 8689.0
1 TraesCS2A01G552700 chr2A 88.534 532 57 4 2347 2876 758384732 758384203 3.970000e-180 641.0
2 TraesCS2A01G552700 chr2A 77.966 708 115 24 145 822 151271177 151270481 5.670000e-109 405.0
3 TraesCS2A01G552700 chr2A 86.723 354 31 5 1531 1881 53326479 53326819 3.440000e-101 379.0
4 TraesCS2A01G552700 chr2A 83.571 140 18 4 1 135 676338242 676338103 4.940000e-25 126.0
5 TraesCS2A01G552700 chr2D 89.211 3893 225 82 909 4697 628159096 628162897 0.000000e+00 4682.0
6 TraesCS2A01G552700 chr2D 85.522 594 63 9 2347 2927 627911962 627911379 2.420000e-167 599.0
7 TraesCS2A01G552700 chr2D 85.082 429 63 1 343 770 551418493 551418921 2.010000e-118 436.0
8 TraesCS2A01G552700 chr2B 92.594 2876 168 18 935 3793 771184939 771187786 0.000000e+00 4089.0
9 TraesCS2A01G552700 chr2B 85.447 481 48 6 2507 2987 770663287 770662829 9.160000e-132 481.0
10 TraesCS2A01G552700 chr2B 82.435 501 48 21 3832 4307 771187786 771188271 7.330000e-108 401.0
11 TraesCS2A01G552700 chr2B 78.471 641 56 40 3892 4506 770662694 770662110 1.250000e-90 344.0
12 TraesCS2A01G552700 chr2B 85.586 222 21 4 4346 4558 771188367 771188586 6.130000e-54 222.0
13 TraesCS2A01G552700 chr2B 81.298 262 41 7 3537 3794 770628567 770628310 6.170000e-49 206.0
14 TraesCS2A01G552700 chr4B 82.748 626 92 8 156 765 397006329 397005704 1.150000e-150 544.0
15 TraesCS2A01G552700 chr4B 79.929 563 97 14 145 702 55031332 55031883 2.640000e-107 399.0
16 TraesCS2A01G552700 chr5B 81.151 695 113 9 145 822 348443543 348442850 4.140000e-150 542.0
17 TraesCS2A01G552700 chr5B 86.364 110 12 3 2 110 43121705 43121598 2.970000e-22 117.0
18 TraesCS2A01G552700 chr7A 80.959 709 110 14 135 822 65088526 65087822 5.360000e-149 538.0
19 TraesCS2A01G552700 chr7A 79.036 415 70 7 136 534 127266088 127265675 7.760000e-68 268.0
20 TraesCS2A01G552700 chr6A 80.851 705 117 8 135 822 454303414 454302711 5.360000e-149 538.0
21 TraesCS2A01G552700 chr6A 78.464 534 94 12 136 650 453130885 453131416 3.510000e-86 329.0
22 TraesCS2A01G552700 chr1D 80.726 716 109 23 135 827 237765717 237766426 8.960000e-147 531.0
23 TraesCS2A01G552700 chr1D 80.061 326 49 6 136 445 112765130 112765455 1.320000e-55 228.0
24 TraesCS2A01G552700 chr1D 82.902 193 30 3 137 327 389099061 389098870 2.250000e-38 171.0
25 TraesCS2A01G552700 chr1B 85.400 500 47 12 1436 1930 65773860 65773382 3.270000e-136 496.0
26 TraesCS2A01G552700 chr1B 79.516 703 121 16 145 826 606629326 606628626 3.290000e-131 479.0
27 TraesCS2A01G552700 chr1B 88.889 72 6 1 1094 1165 557401305 557401236 2.330000e-13 87.9
28 TraesCS2A01G552700 chr3B 81.628 479 86 2 344 820 817611504 817611026 3.410000e-106 396.0
29 TraesCS2A01G552700 chr3B 86.861 137 16 2 1 135 474995653 474995517 8.150000e-33 152.0
30 TraesCS2A01G552700 chr3B 89.091 110 11 1 2 110 659717516 659717625 8.210000e-28 135.0
31 TraesCS2A01G552700 chr7B 86.969 353 31 7 1531 1881 580783654 580783993 2.660000e-102 383.0
32 TraesCS2A01G552700 chr7B 88.571 70 8 0 1086 1155 577295487 577295556 8.390000e-13 86.1
33 TraesCS2A01G552700 chr5D 78.299 576 102 10 145 702 544195694 544196264 2.690000e-92 350.0
34 TraesCS2A01G552700 chr3D 76.367 512 86 14 190 686 16247623 16247132 4.700000e-60 243.0
35 TraesCS2A01G552700 chr4A 81.356 295 35 8 137 414 31165183 31165474 6.130000e-54 222.0
36 TraesCS2A01G552700 chr4A 83.784 111 17 1 1 110 612407814 612407924 2.320000e-18 104.0
37 TraesCS2A01G552700 chr7D 91.228 114 10 0 1035 1148 578983505 578983618 6.300000e-34 156.0
38 TraesCS2A01G552700 chr6D 86.325 117 12 4 21 134 350560547 350560432 1.780000e-24 124.0
39 TraesCS2A01G552700 chr4D 85.714 112 15 1 1 111 327286693 327286804 2.970000e-22 117.0
40 TraesCS2A01G552700 chr5A 93.421 76 4 1 60 134 533320045 533319970 1.380000e-20 111.0
41 TraesCS2A01G552700 chr3A 84.545 110 14 3 1 108 19050678 19050786 6.440000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G552700 chr2A 758529215 758533919 4704 False 8689.000000 8689 100.000000 1 4705 1 chr2A.!!$F2 4704
1 TraesCS2A01G552700 chr2A 758384203 758384732 529 True 641.000000 641 88.534000 2347 2876 1 chr2A.!!$R3 529
2 TraesCS2A01G552700 chr2A 151270481 151271177 696 True 405.000000 405 77.966000 145 822 1 chr2A.!!$R1 677
3 TraesCS2A01G552700 chr2D 628159096 628162897 3801 False 4682.000000 4682 89.211000 909 4697 1 chr2D.!!$F2 3788
4 TraesCS2A01G552700 chr2D 627911379 627911962 583 True 599.000000 599 85.522000 2347 2927 1 chr2D.!!$R1 580
5 TraesCS2A01G552700 chr2B 771184939 771188586 3647 False 1570.666667 4089 86.871667 935 4558 3 chr2B.!!$F1 3623
6 TraesCS2A01G552700 chr2B 770662110 770663287 1177 True 412.500000 481 81.959000 2507 4506 2 chr2B.!!$R2 1999
7 TraesCS2A01G552700 chr4B 397005704 397006329 625 True 544.000000 544 82.748000 156 765 1 chr4B.!!$R1 609
8 TraesCS2A01G552700 chr4B 55031332 55031883 551 False 399.000000 399 79.929000 145 702 1 chr4B.!!$F1 557
9 TraesCS2A01G552700 chr5B 348442850 348443543 693 True 542.000000 542 81.151000 145 822 1 chr5B.!!$R2 677
10 TraesCS2A01G552700 chr7A 65087822 65088526 704 True 538.000000 538 80.959000 135 822 1 chr7A.!!$R1 687
11 TraesCS2A01G552700 chr6A 454302711 454303414 703 True 538.000000 538 80.851000 135 822 1 chr6A.!!$R1 687
12 TraesCS2A01G552700 chr6A 453130885 453131416 531 False 329.000000 329 78.464000 136 650 1 chr6A.!!$F1 514
13 TraesCS2A01G552700 chr1D 237765717 237766426 709 False 531.000000 531 80.726000 135 827 1 chr1D.!!$F2 692
14 TraesCS2A01G552700 chr1B 606628626 606629326 700 True 479.000000 479 79.516000 145 826 1 chr1B.!!$R3 681
15 TraesCS2A01G552700 chr5D 544195694 544196264 570 False 350.000000 350 78.299000 145 702 1 chr5D.!!$F1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.037512 CCCATCGCAAATTGCACCAA 60.038 50.0 18.65 0.4 45.36 3.67 F
314 318 0.106708 AGTGCTTCAAGCTCGTTGGA 59.893 50.0 11.57 0.0 42.97 3.53 F
737 772 1.120530 GACATGTGGATACCGGGAGT 58.879 55.0 1.15 0.0 0.00 3.85 F
2171 2272 0.251787 TCTGCTGAGTGCTGACCCTA 60.252 55.0 0.00 0.0 43.20 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 1887 0.109132 CCTTGGCCGAAAATCTGCAC 60.109 55.0 0.00 0.00 0.00 4.57 R
2143 2244 0.590195 CACTCAGCAGACTGGTTTGC 59.410 55.0 3.93 7.97 44.59 3.68 R
2228 2329 2.043115 TCTCCTCCCTACTCTGCTTGAA 59.957 50.0 0.00 0.00 0.00 2.69 R
4045 4193 0.035317 AAACTGATGGCACGCAGAGA 59.965 50.0 21.69 0.00 36.94 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.562250 CGGCACCCCTCATATCCA 58.438 61.111 0.00 0.00 0.00 3.41
18 19 1.372683 CGGCACCCCTCATATCCAG 59.627 63.158 0.00 0.00 0.00 3.86
19 20 1.763770 GGCACCCCTCATATCCAGG 59.236 63.158 0.00 0.00 0.00 4.45
20 21 1.073897 GCACCCCTCATATCCAGGC 59.926 63.158 0.00 0.00 0.00 4.85
21 22 1.763770 CACCCCTCATATCCAGGCC 59.236 63.158 0.00 0.00 0.00 5.19
22 23 1.061905 CACCCCTCATATCCAGGCCA 61.062 60.000 5.01 0.00 0.00 5.36
23 24 0.328450 ACCCCTCATATCCAGGCCAA 60.328 55.000 5.01 0.00 0.00 4.52
24 25 0.852842 CCCCTCATATCCAGGCCAAA 59.147 55.000 5.01 0.00 0.00 3.28
25 26 1.430464 CCCCTCATATCCAGGCCAAAT 59.570 52.381 5.01 0.00 0.00 2.32
26 27 2.649312 CCCCTCATATCCAGGCCAAATA 59.351 50.000 5.01 0.00 0.00 1.40
27 28 3.270433 CCCCTCATATCCAGGCCAAATAT 59.730 47.826 5.01 1.88 0.00 1.28
28 29 4.275810 CCCTCATATCCAGGCCAAATATG 58.724 47.826 18.81 18.81 35.58 1.78
29 30 4.264083 CCCTCATATCCAGGCCAAATATGT 60.264 45.833 21.72 2.62 35.69 2.29
30 31 4.703575 CCTCATATCCAGGCCAAATATGTG 59.296 45.833 21.72 19.83 35.69 3.21
31 32 4.665451 TCATATCCAGGCCAAATATGTGG 58.335 43.478 21.72 7.66 42.05 4.17
41 42 3.684908 CCAAATATGTGGCGGATATGGA 58.315 45.455 0.00 0.00 0.00 3.41
42 43 4.078537 CCAAATATGTGGCGGATATGGAA 58.921 43.478 0.00 0.00 0.00 3.53
43 44 4.156556 CCAAATATGTGGCGGATATGGAAG 59.843 45.833 0.00 0.00 0.00 3.46
44 45 2.472695 TATGTGGCGGATATGGAAGC 57.527 50.000 0.00 0.00 0.00 3.86
45 46 0.603707 ATGTGGCGGATATGGAAGCG 60.604 55.000 0.00 0.00 0.00 4.68
46 47 2.280797 TGGCGGATATGGAAGCGC 60.281 61.111 0.00 0.00 0.00 5.92
47 48 3.050275 GGCGGATATGGAAGCGCC 61.050 66.667 2.29 0.00 35.36 6.53
48 49 3.050275 GCGGATATGGAAGCGCCC 61.050 66.667 2.29 0.00 34.97 6.13
49 50 2.738521 CGGATATGGAAGCGCCCG 60.739 66.667 2.29 2.83 34.97 6.13
50 51 2.358737 GGATATGGAAGCGCCCGG 60.359 66.667 2.29 0.00 34.97 5.73
51 52 3.050275 GATATGGAAGCGCCCGGC 61.050 66.667 2.29 0.00 44.05 6.13
68 69 3.680786 CGCCTCCACCACGTCAGA 61.681 66.667 0.00 0.00 0.00 3.27
69 70 2.262915 GCCTCCACCACGTCAGAG 59.737 66.667 0.00 0.00 0.00 3.35
70 71 2.262915 CCTCCACCACGTCAGAGC 59.737 66.667 0.00 0.00 0.00 4.09
71 72 2.262915 CTCCACCACGTCAGAGCC 59.737 66.667 0.00 0.00 0.00 4.70
72 73 3.633094 CTCCACCACGTCAGAGCCG 62.633 68.421 0.00 0.00 0.00 5.52
73 74 3.680786 CCACCACGTCAGAGCCGA 61.681 66.667 0.00 0.00 0.00 5.54
74 75 2.430921 CACCACGTCAGAGCCGAC 60.431 66.667 0.00 0.00 0.00 4.79
75 76 2.910479 ACCACGTCAGAGCCGACA 60.910 61.111 0.00 0.00 35.54 4.35
76 77 2.126307 CCACGTCAGAGCCGACAG 60.126 66.667 0.00 0.00 35.54 3.51
77 78 2.807045 CACGTCAGAGCCGACAGC 60.807 66.667 0.00 0.00 44.25 4.40
78 79 4.057428 ACGTCAGAGCCGACAGCC 62.057 66.667 0.00 0.00 45.47 4.85
79 80 4.803426 CGTCAGAGCCGACAGCCC 62.803 72.222 0.00 0.00 45.47 5.19
80 81 4.803426 GTCAGAGCCGACAGCCCG 62.803 72.222 0.00 0.00 45.47 6.13
82 83 4.803426 CAGAGCCGACAGCCCGAC 62.803 72.222 0.00 0.00 45.47 4.79
88 89 4.530857 CGACAGCCCGACCCCATC 62.531 72.222 0.00 0.00 0.00 3.51
97 98 1.226660 CGACCCCATCGCAAATTGC 60.227 57.895 8.09 8.09 45.52 3.56
98 99 1.889454 GACCCCATCGCAAATTGCA 59.111 52.632 18.65 5.71 45.36 4.08
99 100 0.458370 GACCCCATCGCAAATTGCAC 60.458 55.000 18.65 0.00 45.36 4.57
100 101 1.153588 CCCCATCGCAAATTGCACC 60.154 57.895 18.65 0.00 45.36 5.01
101 102 1.590665 CCCATCGCAAATTGCACCA 59.409 52.632 18.65 1.16 45.36 4.17
102 103 0.037512 CCCATCGCAAATTGCACCAA 60.038 50.000 18.65 0.40 45.36 3.67
103 104 1.607509 CCCATCGCAAATTGCACCAAA 60.608 47.619 18.65 0.00 45.36 3.28
104 105 2.348660 CCATCGCAAATTGCACCAAAT 58.651 42.857 18.65 0.39 45.36 2.32
105 106 2.349275 CCATCGCAAATTGCACCAAATC 59.651 45.455 18.65 0.00 45.36 2.17
106 107 2.077413 TCGCAAATTGCACCAAATCC 57.923 45.000 18.65 0.00 45.36 3.01
107 108 1.342496 TCGCAAATTGCACCAAATCCA 59.658 42.857 18.65 0.00 45.36 3.41
108 109 1.460359 CGCAAATTGCACCAAATCCAC 59.540 47.619 18.65 0.00 45.36 4.02
109 110 1.805943 GCAAATTGCACCAAATCCACC 59.194 47.619 13.73 0.00 44.26 4.61
110 111 2.425539 CAAATTGCACCAAATCCACCC 58.574 47.619 0.00 0.00 0.00 4.61
111 112 0.983467 AATTGCACCAAATCCACCCC 59.017 50.000 0.00 0.00 0.00 4.95
112 113 1.257055 ATTGCACCAAATCCACCCCG 61.257 55.000 0.00 0.00 0.00 5.73
113 114 3.068064 GCACCAAATCCACCCCGG 61.068 66.667 0.00 0.00 0.00 5.73
131 132 2.256117 GGACCTACCGGATCCATTTG 57.744 55.000 9.46 0.00 33.36 2.32
132 133 1.594331 GACCTACCGGATCCATTTGC 58.406 55.000 9.46 0.00 0.00 3.68
133 134 1.141053 GACCTACCGGATCCATTTGCT 59.859 52.381 9.46 0.00 0.00 3.91
139 140 0.933097 CGGATCCATTTGCTCGTCAG 59.067 55.000 13.41 0.00 0.00 3.51
180 182 4.219944 TGGGATACTATCTTGCGATGGTAC 59.780 45.833 0.99 0.00 43.51 3.34
216 218 4.324719 GGTGGGGTTTGTGAAGACCATATA 60.325 45.833 0.00 0.00 37.68 0.86
224 228 5.607939 TGTGAAGACCATATACGAACCAT 57.392 39.130 0.00 0.00 0.00 3.55
226 230 6.745116 TGTGAAGACCATATACGAACCATAG 58.255 40.000 0.00 0.00 0.00 2.23
230 234 2.232941 ACCATATACGAACCATAGGGCG 59.767 50.000 0.00 0.00 33.97 6.13
231 235 2.418197 CCATATACGAACCATAGGGCGG 60.418 54.545 0.00 0.00 37.90 6.13
279 283 1.475930 GGAAGCAGGTAGGAAGGATGC 60.476 57.143 0.00 0.00 37.15 3.91
280 284 1.210478 GAAGCAGGTAGGAAGGATGCA 59.790 52.381 0.00 0.00 39.34 3.96
314 318 0.106708 AGTGCTTCAAGCTCGTTGGA 59.893 50.000 11.57 0.00 42.97 3.53
335 339 1.197721 GAATTGTTCGTGGGTCTGCAG 59.802 52.381 7.63 7.63 0.00 4.41
336 340 1.237285 ATTGTTCGTGGGTCTGCAGC 61.237 55.000 9.47 4.04 0.00 5.25
341 360 2.456119 CGTGGGTCTGCAGCGAATC 61.456 63.158 9.47 0.00 0.00 2.52
416 435 1.535204 GGGTGATGGTGTTGCCCAAG 61.535 60.000 0.00 0.00 38.20 3.61
453 472 5.351458 AGCATTTGGAGAACAAGTTCAAAC 58.649 37.500 14.69 5.43 41.84 2.93
462 481 3.003378 GAACAAGTTCAAACCTCGGAAGG 59.997 47.826 8.01 0.00 42.60 3.46
534 553 3.159283 ATCATCATGTGCACGCGCG 62.159 57.895 30.96 30.96 42.97 6.86
550 569 1.676057 CGCGGTTACTCGATGATCTC 58.324 55.000 0.00 0.00 0.00 2.75
688 713 3.002656 GTGACATTGGCTTGTATGATCGG 59.997 47.826 0.00 0.00 0.00 4.18
702 737 6.587273 TGTATGATCGGTGTGAATGGATTTA 58.413 36.000 0.00 0.00 0.00 1.40
737 772 1.120530 GACATGTGGATACCGGGAGT 58.879 55.000 1.15 0.00 0.00 3.85
747 782 4.039973 TGGATACCGGGAGTGAAATATGAC 59.960 45.833 6.32 0.00 0.00 3.06
782 817 2.514592 CTGCGAATGTGCCCGGAT 60.515 61.111 0.73 0.00 0.00 4.18
788 823 1.705337 GAATGTGCCCGGATGTGTCG 61.705 60.000 0.73 0.00 0.00 4.35
798 833 1.870901 GATGTGTCGCCGGACGTAC 60.871 63.158 5.05 12.58 46.49 3.67
799 834 3.672255 ATGTGTCGCCGGACGTACG 62.672 63.158 14.78 14.78 46.49 3.67
827 863 2.350772 CGGATTTGACAAGTCCAACTGC 60.351 50.000 24.57 2.38 32.23 4.40
828 864 2.887152 GGATTTGACAAGTCCAACTGCT 59.113 45.455 21.43 0.00 32.23 4.24
829 865 3.057946 GGATTTGACAAGTCCAACTGCTC 60.058 47.826 21.43 0.00 32.23 4.26
830 866 3.281727 TTTGACAAGTCCAACTGCTCT 57.718 42.857 0.00 0.00 0.00 4.09
831 867 3.281727 TTGACAAGTCCAACTGCTCTT 57.718 42.857 0.00 0.00 0.00 2.85
832 868 4.415881 TTGACAAGTCCAACTGCTCTTA 57.584 40.909 0.00 0.00 0.00 2.10
833 869 3.728845 TGACAAGTCCAACTGCTCTTAC 58.271 45.455 0.00 0.00 0.00 2.34
834 870 3.388024 TGACAAGTCCAACTGCTCTTACT 59.612 43.478 0.00 0.00 0.00 2.24
835 871 3.733337 ACAAGTCCAACTGCTCTTACTG 58.267 45.455 0.00 0.00 0.00 2.74
836 872 3.070018 CAAGTCCAACTGCTCTTACTGG 58.930 50.000 0.00 0.00 0.00 4.00
837 873 2.330216 AGTCCAACTGCTCTTACTGGT 58.670 47.619 0.00 0.00 0.00 4.00
838 874 2.300437 AGTCCAACTGCTCTTACTGGTC 59.700 50.000 0.00 0.00 0.00 4.02
839 875 2.300437 GTCCAACTGCTCTTACTGGTCT 59.700 50.000 0.00 0.00 0.00 3.85
840 876 3.510360 GTCCAACTGCTCTTACTGGTCTA 59.490 47.826 0.00 0.00 0.00 2.59
841 877 4.160626 GTCCAACTGCTCTTACTGGTCTAT 59.839 45.833 0.00 0.00 0.00 1.98
842 878 5.360144 GTCCAACTGCTCTTACTGGTCTATA 59.640 44.000 0.00 0.00 0.00 1.31
843 879 5.360144 TCCAACTGCTCTTACTGGTCTATAC 59.640 44.000 0.00 0.00 0.00 1.47
844 880 5.361285 CCAACTGCTCTTACTGGTCTATACT 59.639 44.000 0.00 0.00 0.00 2.12
845 881 6.127310 CCAACTGCTCTTACTGGTCTATACTT 60.127 42.308 0.00 0.00 0.00 2.24
846 882 7.324178 CAACTGCTCTTACTGGTCTATACTTT 58.676 38.462 0.00 0.00 0.00 2.66
847 883 7.483580 ACTGCTCTTACTGGTCTATACTTTT 57.516 36.000 0.00 0.00 0.00 2.27
848 884 7.324178 ACTGCTCTTACTGGTCTATACTTTTG 58.676 38.462 0.00 0.00 0.00 2.44
849 885 6.640518 TGCTCTTACTGGTCTATACTTTTGG 58.359 40.000 0.00 0.00 0.00 3.28
850 886 6.049790 GCTCTTACTGGTCTATACTTTTGGG 58.950 44.000 0.00 0.00 0.00 4.12
851 887 6.351966 GCTCTTACTGGTCTATACTTTTGGGT 60.352 42.308 0.00 0.00 0.00 4.51
852 888 7.563724 TCTTACTGGTCTATACTTTTGGGTT 57.436 36.000 0.00 0.00 0.00 4.11
853 889 8.669055 TCTTACTGGTCTATACTTTTGGGTTA 57.331 34.615 0.00 0.00 0.00 2.85
854 890 8.755977 TCTTACTGGTCTATACTTTTGGGTTAG 58.244 37.037 0.00 0.00 0.00 2.34
855 891 6.947376 ACTGGTCTATACTTTTGGGTTAGT 57.053 37.500 0.00 0.00 0.00 2.24
856 892 7.325725 ACTGGTCTATACTTTTGGGTTAGTT 57.674 36.000 0.00 0.00 0.00 2.24
857 893 7.392418 ACTGGTCTATACTTTTGGGTTAGTTC 58.608 38.462 0.00 0.00 0.00 3.01
858 894 7.016858 ACTGGTCTATACTTTTGGGTTAGTTCA 59.983 37.037 0.00 0.00 0.00 3.18
859 895 7.747690 TGGTCTATACTTTTGGGTTAGTTCAA 58.252 34.615 0.00 0.00 0.00 2.69
860 896 8.387813 TGGTCTATACTTTTGGGTTAGTTCAAT 58.612 33.333 0.00 0.00 0.00 2.57
861 897 9.895138 GGTCTATACTTTTGGGTTAGTTCAATA 57.105 33.333 0.00 0.00 0.00 1.90
868 904 9.582648 ACTTTTGGGTTAGTTCAATATACAGTT 57.417 29.630 0.00 0.00 0.00 3.16
869 905 9.840427 CTTTTGGGTTAGTTCAATATACAGTTG 57.160 33.333 0.00 0.00 0.00 3.16
870 906 6.995511 TGGGTTAGTTCAATATACAGTTGC 57.004 37.500 0.00 0.00 0.00 4.17
871 907 6.477253 TGGGTTAGTTCAATATACAGTTGCA 58.523 36.000 0.00 0.00 0.00 4.08
872 908 7.116075 TGGGTTAGTTCAATATACAGTTGCAT 58.884 34.615 0.00 0.00 0.00 3.96
873 909 7.282224 TGGGTTAGTTCAATATACAGTTGCATC 59.718 37.037 0.00 0.00 0.00 3.91
874 910 7.282224 GGGTTAGTTCAATATACAGTTGCATCA 59.718 37.037 0.00 0.00 0.00 3.07
875 911 8.840321 GGTTAGTTCAATATACAGTTGCATCAT 58.160 33.333 0.00 0.00 0.00 2.45
879 915 9.577110 AGTTCAATATACAGTTGCATCATTTTG 57.423 29.630 0.00 0.00 0.00 2.44
880 916 8.810427 GTTCAATATACAGTTGCATCATTTTGG 58.190 33.333 0.00 0.00 0.00 3.28
881 917 8.065473 TCAATATACAGTTGCATCATTTTGGT 57.935 30.769 0.00 0.00 0.00 3.67
882 918 8.530311 TCAATATACAGTTGCATCATTTTGGTT 58.470 29.630 0.00 0.00 0.00 3.67
883 919 9.800433 CAATATACAGTTGCATCATTTTGGTTA 57.200 29.630 0.00 0.00 0.00 2.85
885 921 4.559153 ACAGTTGCATCATTTTGGTTAGC 58.441 39.130 0.00 0.00 0.00 3.09
886 922 3.609373 CAGTTGCATCATTTTGGTTAGCG 59.391 43.478 0.00 0.00 0.00 4.26
887 923 3.505680 AGTTGCATCATTTTGGTTAGCGA 59.494 39.130 0.00 0.00 0.00 4.93
888 924 3.485947 TGCATCATTTTGGTTAGCGAC 57.514 42.857 0.00 0.00 0.00 5.19
907 943 2.672996 GCACGGGCATGACCAGTT 60.673 61.111 20.22 0.00 45.59 3.16
963 999 1.687493 CACTCCTCCCCTCCCAGAC 60.687 68.421 0.00 0.00 0.00 3.51
964 1000 2.041405 CTCCTCCCCTCCCAGACC 60.041 72.222 0.00 0.00 0.00 3.85
965 1001 3.695825 TCCTCCCCTCCCAGACCC 61.696 72.222 0.00 0.00 0.00 4.46
966 1002 4.024984 CCTCCCCTCCCAGACCCA 62.025 72.222 0.00 0.00 0.00 4.51
967 1003 2.366167 CTCCCCTCCCAGACCCAG 60.366 72.222 0.00 0.00 0.00 4.45
968 1004 2.874245 TCCCCTCCCAGACCCAGA 60.874 66.667 0.00 0.00 0.00 3.86
1440 1538 1.244816 TGACTATATCCCCTGTCGCG 58.755 55.000 0.00 0.00 32.64 5.87
1462 1560 4.024048 CGTTCTCTGCTTGTTGGTTAATGT 60.024 41.667 0.00 0.00 0.00 2.71
1463 1561 5.452777 GTTCTCTGCTTGTTGGTTAATGTC 58.547 41.667 0.00 0.00 0.00 3.06
1542 1640 6.954616 TCTGCAATGTGCTCAATTAATTTG 57.045 33.333 0.00 0.00 45.31 2.32
1547 1645 6.369615 GCAATGTGCTCAATTAATTTGGAACT 59.630 34.615 0.00 0.00 40.96 3.01
1550 1648 7.048629 TGTGCTCAATTAATTTGGAACTGAA 57.951 32.000 0.00 0.00 35.92 3.02
1595 1693 5.163612 GCTTTGCCTCCTCCAACTAATTTAG 60.164 44.000 1.79 1.79 0.00 1.85
1596 1694 4.503714 TGCCTCCTCCAACTAATTTAGG 57.496 45.455 8.26 0.00 0.00 2.69
1597 1695 3.850173 TGCCTCCTCCAACTAATTTAGGT 59.150 43.478 8.26 0.00 0.00 3.08
1598 1696 5.034200 TGCCTCCTCCAACTAATTTAGGTA 58.966 41.667 8.26 0.00 0.00 3.08
1599 1697 5.670361 TGCCTCCTCCAACTAATTTAGGTAT 59.330 40.000 8.26 0.00 0.00 2.73
1600 1698 6.159751 TGCCTCCTCCAACTAATTTAGGTATT 59.840 38.462 8.26 0.00 0.00 1.89
1601 1699 6.486993 GCCTCCTCCAACTAATTTAGGTATTG 59.513 42.308 8.26 3.92 0.00 1.90
1602 1700 6.998673 CCTCCTCCAACTAATTTAGGTATTGG 59.001 42.308 14.05 14.05 38.35 3.16
1603 1701 6.362248 TCCTCCAACTAATTTAGGTATTGGC 58.638 40.000 14.89 0.00 37.18 4.52
1604 1702 5.535030 CCTCCAACTAATTTAGGTATTGGCC 59.465 44.000 14.89 0.00 37.18 5.36
1605 1703 5.127491 TCCAACTAATTTAGGTATTGGCCG 58.873 41.667 14.89 0.00 37.18 6.13
1606 1704 4.885325 CCAACTAATTTAGGTATTGGCCGT 59.115 41.667 8.26 0.00 30.94 5.68
1607 1705 5.008316 CCAACTAATTTAGGTATTGGCCGTC 59.992 44.000 8.26 0.00 30.94 4.79
1608 1706 4.711399 ACTAATTTAGGTATTGGCCGTCC 58.289 43.478 8.26 0.00 0.00 4.79
1611 1709 3.655615 TTTAGGTATTGGCCGTCCATT 57.344 42.857 0.00 0.00 43.05 3.16
1621 1719 3.146066 TGGCCGTCCATTATTAGATTGC 58.854 45.455 0.00 0.00 37.47 3.56
1622 1720 3.146066 GGCCGTCCATTATTAGATTGCA 58.854 45.455 0.00 0.00 0.00 4.08
1627 1725 5.333339 CCGTCCATTATTAGATTGCACGAAG 60.333 44.000 0.00 0.00 0.00 3.79
1643 1741 4.444720 GCACGAAGGGAATAGAAGTAATCG 59.555 45.833 0.00 0.00 0.00 3.34
1664 1762 4.274705 TCGTTGTGAAATCTTAGCTTTGCA 59.725 37.500 0.00 0.00 0.00 4.08
1764 1863 7.609532 ACTTTCAAAAGCAGAGCTCTGTATTAT 59.390 33.333 37.25 21.09 45.45 1.28
1768 1867 2.038295 AGCAGAGCTCTGTATTATGGGC 59.962 50.000 37.25 23.26 45.45 5.36
1775 1874 4.823989 AGCTCTGTATTATGGGCATGTTTC 59.176 41.667 0.00 0.00 0.00 2.78
1788 1887 1.135315 CATGTTTCGTTGATGCCCCAG 60.135 52.381 0.00 0.00 0.00 4.45
1799 1898 1.135721 GATGCCCCAGTGCAGATTTTC 59.864 52.381 0.00 0.00 45.93 2.29
1834 1933 2.107378 TGTGCCCTCACTTGGTCAATTA 59.893 45.455 0.00 0.00 43.49 1.40
1876 1975 3.096852 TGGGTGGGCACTCATAGAA 57.903 52.632 0.00 0.00 36.78 2.10
1881 1980 2.092429 GGTGGGCACTCATAGAAATCCA 60.092 50.000 0.00 0.00 0.00 3.41
1883 1982 4.210331 GTGGGCACTCATAGAAATCCAAT 58.790 43.478 0.00 0.00 0.00 3.16
1884 1983 4.646492 GTGGGCACTCATAGAAATCCAATT 59.354 41.667 0.00 0.00 0.00 2.32
1888 1988 6.758416 GGGCACTCATAGAAATCCAATTTTTC 59.242 38.462 0.00 0.00 34.08 2.29
1952 2052 1.885887 GGTTTGGCAGTGCTAATGTGA 59.114 47.619 15.17 0.00 0.00 3.58
1978 2078 3.190535 CCAACCAAACACAGCCTACATAC 59.809 47.826 0.00 0.00 0.00 2.39
1985 2085 4.730949 ACACAGCCTACATACGTACAAT 57.269 40.909 0.00 0.00 0.00 2.71
1988 2088 3.243301 ACAGCCTACATACGTACAATCCG 60.243 47.826 0.00 0.00 0.00 4.18
1989 2089 2.056577 GCCTACATACGTACAATCCGC 58.943 52.381 0.00 0.00 0.00 5.54
2037 2137 4.741321 AATGGTTGGGCAACATTGATAG 57.259 40.909 0.00 0.00 42.85 2.08
2045 2146 3.067320 GGGCAACATTGATAGCCTCTTTC 59.933 47.826 14.80 0.17 46.23 2.62
2046 2147 3.950395 GGCAACATTGATAGCCTCTTTCT 59.050 43.478 10.15 0.00 43.70 2.52
2048 2149 5.590259 GGCAACATTGATAGCCTCTTTCTTA 59.410 40.000 10.15 0.00 43.70 2.10
2049 2150 6.238593 GGCAACATTGATAGCCTCTTTCTTAG 60.239 42.308 10.15 0.00 43.70 2.18
2050 2151 6.723282 CAACATTGATAGCCTCTTTCTTAGC 58.277 40.000 0.00 0.00 0.00 3.09
2143 2244 0.603707 ACATCACACCACAGAAGCGG 60.604 55.000 0.00 0.00 0.00 5.52
2171 2272 0.251787 TCTGCTGAGTGCTGACCCTA 60.252 55.000 0.00 0.00 43.20 3.53
2172 2273 0.610174 CTGCTGAGTGCTGACCCTAA 59.390 55.000 0.00 0.00 42.27 2.69
2326 2432 5.065914 ACTATGTGCACAGTTGTCTTCAAT 58.934 37.500 25.84 6.04 35.92 2.57
2335 2441 4.586001 ACAGTTGTCTTCAATGCCAGAAAT 59.414 37.500 0.00 0.00 35.92 2.17
2336 2442 5.069516 ACAGTTGTCTTCAATGCCAGAAATT 59.930 36.000 0.00 0.00 35.92 1.82
2337 2443 5.987347 CAGTTGTCTTCAATGCCAGAAATTT 59.013 36.000 0.00 0.00 35.92 1.82
2404 2510 4.150897 ACCTTCTGTTTGTACTTCTGCA 57.849 40.909 0.00 0.00 0.00 4.41
2492 2605 2.733956 TGGATGGTTCATACAAAGGGC 58.266 47.619 0.00 0.00 30.95 5.19
2579 2692 5.863397 CGAGGCAGCTGAAAAATATTTTGAA 59.137 36.000 20.43 5.14 0.00 2.69
2700 2820 1.549620 AGATGGATGAGCTAGGCATCG 59.450 52.381 7.56 0.00 42.32 3.84
3047 3169 3.006217 GCAGACAGCCTTTTGATTTCCTT 59.994 43.478 0.00 0.00 37.23 3.36
3056 3178 7.554118 CAGCCTTTTGATTTCCTTATGAGTCTA 59.446 37.037 0.00 0.00 0.00 2.59
3182 3304 4.575645 GCTCTTCTTAAGCTCAATGATGCT 59.424 41.667 0.00 2.21 41.82 3.79
3233 3355 5.150715 TGGGAGTCTAATCATGAGTGCTAT 58.849 41.667 5.80 0.00 0.00 2.97
3303 3425 2.698763 GCCAAGGAAGCAGAGCAGC 61.699 63.158 0.00 0.00 0.00 5.25
3311 3433 2.033141 GCAGAGCAGCTGTGGGAA 59.967 61.111 20.58 0.00 46.62 3.97
3413 3535 0.674895 AATCAGCGCTGAACTGGGTC 60.675 55.000 40.83 0.00 43.58 4.46
3488 3610 3.257624 TCCCGAAGTTCTCCAAGTACTTC 59.742 47.826 4.77 13.41 44.26 3.01
3618 3740 4.838486 GTGAGACGAGCCGCTCCG 62.838 72.222 14.85 11.91 32.33 4.63
3659 3781 6.344500 AGACGACAAGATTGAGATTTGCTAT 58.656 36.000 0.00 0.00 0.00 2.97
3729 3854 1.907255 GTACCTGTTTCTGCCCCTAGT 59.093 52.381 0.00 0.00 0.00 2.57
3734 3859 3.244770 CCTGTTTCTGCCCCTAGTTTACA 60.245 47.826 0.00 0.00 0.00 2.41
3738 3863 0.611714 CTGCCCCTAGTTTACACCGT 59.388 55.000 0.00 0.00 0.00 4.83
3748 3873 5.990996 CCTAGTTTACACCGTTGGTTTCTTA 59.009 40.000 0.00 0.00 31.02 2.10
3782 3907 6.465685 CGTGAACGAATAGCAGAAAGCAGG 62.466 50.000 0.00 0.00 44.17 4.85
3795 3920 7.835634 GCAGAAAGCAGGTATTATATAGTCC 57.164 40.000 0.00 0.00 44.79 3.85
3796 3921 6.531948 GCAGAAAGCAGGTATTATATAGTCCG 59.468 42.308 0.00 0.00 44.79 4.79
3799 3924 6.777213 AAGCAGGTATTATATAGTCCGAGG 57.223 41.667 0.00 0.00 0.00 4.63
3801 3926 4.341520 GCAGGTATTATATAGTCCGAGGGG 59.658 50.000 0.00 0.00 0.00 4.79
3803 3928 6.374588 CAGGTATTATATAGTCCGAGGGGAT 58.625 44.000 0.00 0.00 46.14 3.85
3805 3930 6.393440 AGGTATTATATAGTCCGAGGGGATCT 59.607 42.308 0.00 0.00 46.14 2.75
3806 3931 7.068061 GGTATTATATAGTCCGAGGGGATCTT 58.932 42.308 0.00 0.00 46.14 2.40
3807 3932 7.564292 GGTATTATATAGTCCGAGGGGATCTTT 59.436 40.741 0.00 0.00 46.14 2.52
3808 3933 7.663043 ATTATATAGTCCGAGGGGATCTTTC 57.337 40.000 0.00 0.00 46.14 2.62
3809 3934 3.621682 ATAGTCCGAGGGGATCTTTCT 57.378 47.619 0.00 0.00 46.14 2.52
3810 3935 1.783071 AGTCCGAGGGGATCTTTCTC 58.217 55.000 0.00 0.00 46.14 2.87
3811 3936 0.753867 GTCCGAGGGGATCTTTCTCC 59.246 60.000 0.00 0.00 46.14 3.71
3818 3943 3.908643 GGGGATCTTTCTCCTACGTTT 57.091 47.619 0.00 0.00 39.70 3.60
3819 3944 3.532542 GGGGATCTTTCTCCTACGTTTG 58.467 50.000 0.00 0.00 39.70 2.93
3820 3945 3.532542 GGGATCTTTCTCCTACGTTTGG 58.467 50.000 0.00 0.00 35.50 3.28
3821 3946 3.055312 GGGATCTTTCTCCTACGTTTGGT 60.055 47.826 0.00 0.00 35.50 3.67
3822 3947 3.933332 GGATCTTTCTCCTACGTTTGGTG 59.067 47.826 0.00 0.00 32.18 4.17
3823 3948 2.762745 TCTTTCTCCTACGTTTGGTGC 58.237 47.619 0.00 0.00 0.00 5.01
3824 3949 2.367567 TCTTTCTCCTACGTTTGGTGCT 59.632 45.455 0.00 0.00 0.00 4.40
3825 3950 2.922740 TTCTCCTACGTTTGGTGCTT 57.077 45.000 0.00 0.00 0.00 3.91
3826 3951 2.450609 TCTCCTACGTTTGGTGCTTC 57.549 50.000 0.00 0.00 0.00 3.86
3827 3952 1.968493 TCTCCTACGTTTGGTGCTTCT 59.032 47.619 0.00 0.00 0.00 2.85
3828 3953 2.069273 CTCCTACGTTTGGTGCTTCTG 58.931 52.381 0.00 0.00 0.00 3.02
3829 3954 1.689813 TCCTACGTTTGGTGCTTCTGA 59.310 47.619 0.00 0.00 0.00 3.27
3830 3955 2.301870 TCCTACGTTTGGTGCTTCTGAT 59.698 45.455 0.00 0.00 0.00 2.90
3864 3989 1.442520 CATCGGCGTTTGGTGCTTG 60.443 57.895 6.85 0.00 0.00 4.01
3943 4080 6.701145 GGGGATCTTTCTCCTACATTTTTC 57.299 41.667 0.00 0.00 39.70 2.29
3951 4088 8.638873 TCTTTCTCCTACATTTTTCCTTTTTCC 58.361 33.333 0.00 0.00 0.00 3.13
3994 4139 6.655078 ATGTATTGGCTGTTTCAGACTTTT 57.345 33.333 4.24 0.00 40.76 2.27
3995 4140 5.830912 TGTATTGGCTGTTTCAGACTTTTG 58.169 37.500 4.24 0.00 40.76 2.44
3996 4141 5.592282 TGTATTGGCTGTTTCAGACTTTTGA 59.408 36.000 4.24 0.00 40.76 2.69
4046 4194 4.930463 GGATCGTTCCTTGTTCTCTTTC 57.070 45.455 5.21 0.00 39.14 2.62
4056 4204 0.793250 GTTCTCTTTCTCTGCGTGCC 59.207 55.000 0.00 0.00 0.00 5.01
4057 4205 0.392706 TTCTCTTTCTCTGCGTGCCA 59.607 50.000 0.00 0.00 0.00 4.92
4072 4224 1.547372 GTGCCATCAGTTTCCATGCTT 59.453 47.619 0.00 0.00 0.00 3.91
4076 4228 2.559668 CCATCAGTTTCCATGCTTGTGT 59.440 45.455 0.00 0.00 0.00 3.72
4086 4242 3.890756 TCCATGCTTGTGTCTTTGTGAAT 59.109 39.130 0.00 0.00 0.00 2.57
4088 4244 5.711506 TCCATGCTTGTGTCTTTGTGAATAT 59.288 36.000 0.00 0.00 0.00 1.28
4092 4251 5.181811 TGCTTGTGTCTTTGTGAATATCAGG 59.818 40.000 0.00 0.00 0.00 3.86
4096 4255 6.475504 TGTGTCTTTGTGAATATCAGGTGAT 58.524 36.000 0.00 0.00 38.51 3.06
4153 4315 7.312657 ACTAGCAATGTTCATGTTCATAGTG 57.687 36.000 0.00 0.00 0.00 2.74
4181 4343 8.485578 AACATGTCTAAAAACCAAGGGAATAA 57.514 30.769 0.00 0.00 0.00 1.40
4182 4344 8.664669 ACATGTCTAAAAACCAAGGGAATAAT 57.335 30.769 0.00 0.00 0.00 1.28
4183 4345 9.762381 ACATGTCTAAAAACCAAGGGAATAATA 57.238 29.630 0.00 0.00 0.00 0.98
4204 4366 3.876309 TTGCCCTCCTTTACTTGAACT 57.124 42.857 0.00 0.00 0.00 3.01
4214 4376 4.220602 CCTTTACTTGAACTTCCATTGGGG 59.779 45.833 2.09 0.00 38.37 4.96
4217 4379 1.273327 CTTGAACTTCCATTGGGGTGC 59.727 52.381 2.09 2.11 38.11 5.01
4218 4380 0.187117 TGAACTTCCATTGGGGTGCA 59.813 50.000 2.09 4.73 38.11 4.57
4219 4381 0.890683 GAACTTCCATTGGGGTGCAG 59.109 55.000 2.09 0.00 38.11 4.41
4220 4382 0.482446 AACTTCCATTGGGGTGCAGA 59.518 50.000 2.09 0.00 38.11 4.26
4221 4383 0.038744 ACTTCCATTGGGGTGCAGAG 59.961 55.000 2.09 0.00 38.11 3.35
4224 4386 1.077212 CCATTGGGGTGCAGAGAGG 60.077 63.158 0.00 0.00 0.00 3.69
4225 4387 1.687612 CATTGGGGTGCAGAGAGGT 59.312 57.895 0.00 0.00 0.00 3.85
4226 4388 0.393537 CATTGGGGTGCAGAGAGGTC 60.394 60.000 0.00 0.00 0.00 3.85
4228 4390 0.768221 TTGGGGTGCAGAGAGGTCTT 60.768 55.000 0.00 0.00 0.00 3.01
4229 4391 0.768221 TGGGGTGCAGAGAGGTCTTT 60.768 55.000 0.00 0.00 0.00 2.52
4262 4434 5.309323 TCTGAAAGAAACACACCAACTTG 57.691 39.130 0.00 0.00 42.31 3.16
4285 4457 5.043189 GGTTCTTCAGTTAACCCAATTCG 57.957 43.478 0.88 0.00 39.43 3.34
4299 4471 4.941873 ACCCAATTCGGTTCTTATGTTCTC 59.058 41.667 0.00 0.00 29.19 2.87
4314 4486 9.842775 TCTTATGTTCTCATTATGCTCAAGATT 57.157 29.630 0.00 0.00 35.70 2.40
4318 4490 3.811497 TCTCATTATGCTCAAGATTGCCG 59.189 43.478 0.00 0.00 0.00 5.69
4409 4638 2.027561 CGGTTACTCCCCAACATCAAGA 60.028 50.000 0.00 0.00 0.00 3.02
4480 4720 8.571461 TGAACTGAAGAGAGCAAATAATTCAT 57.429 30.769 0.00 0.00 0.00 2.57
4481 4721 8.671921 TGAACTGAAGAGAGCAAATAATTCATC 58.328 33.333 0.00 0.00 0.00 2.92
4482 4722 8.571461 AACTGAAGAGAGCAAATAATTCATCA 57.429 30.769 0.00 0.00 0.00 3.07
4496 4736 9.866798 AAATAATTCATCAGAAAGAAAGAAGCC 57.133 29.630 0.00 0.00 37.29 4.35
4523 4763 4.511527 CATTACAGCCTGACAACTCAGAT 58.488 43.478 0.00 0.00 46.32 2.90
4543 4783 0.168788 AAACGCGCCAGATTGTGATG 59.831 50.000 5.73 0.00 0.00 3.07
4551 4791 4.035091 GCGCCAGATTGTGATGTTATACAA 59.965 41.667 0.00 0.00 40.65 2.41
4582 4822 2.809601 GTTCGCGGCGTCATGACT 60.810 61.111 22.95 0.00 0.00 3.41
4584 4824 4.829518 TCGCGGCGTCATGACTCG 62.830 66.667 22.95 23.87 0.00 4.18
4595 4835 1.078201 CATGACTCGCAGCTACGCAA 61.078 55.000 0.08 0.00 0.00 4.85
4642 4882 2.066262 CAAAATCGACAGTGCGGTACT 58.934 47.619 7.03 0.00 41.36 2.73
4651 4891 0.464735 AGTGCGGTACTTGTTGCCAA 60.465 50.000 0.00 0.00 35.67 4.52
4667 4907 4.582701 TGCCAAGTAACAATGGTGAAAG 57.417 40.909 0.00 0.00 39.00 2.62
4682 4922 1.133823 TGAAAGCTTTGCAGTCCCAGA 60.134 47.619 18.30 0.00 0.00 3.86
4697 4937 1.088340 CCAGATGCCACTCTTGCTCG 61.088 60.000 0.00 0.00 0.00 5.03
4698 4938 0.390866 CAGATGCCACTCTTGCTCGT 60.391 55.000 0.00 0.00 0.00 4.18
4699 4939 1.134995 CAGATGCCACTCTTGCTCGTA 60.135 52.381 0.00 0.00 0.00 3.43
4700 4940 1.134965 AGATGCCACTCTTGCTCGTAC 60.135 52.381 0.00 0.00 0.00 3.67
4701 4941 0.108138 ATGCCACTCTTGCTCGTACC 60.108 55.000 0.00 0.00 0.00 3.34
4702 4942 1.292223 GCCACTCTTGCTCGTACCA 59.708 57.895 0.00 0.00 0.00 3.25
4703 4943 0.108138 GCCACTCTTGCTCGTACCAT 60.108 55.000 0.00 0.00 0.00 3.55
4704 4944 1.927895 CCACTCTTGCTCGTACCATC 58.072 55.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.372683 CTGGATATGAGGGGTGCCG 59.627 63.158 0.00 0.00 0.00 5.69
1 2 1.763770 CCTGGATATGAGGGGTGCC 59.236 63.158 0.00 0.00 0.00 5.01
2 3 1.073897 GCCTGGATATGAGGGGTGC 59.926 63.158 0.00 0.00 0.00 5.01
3 4 1.061905 TGGCCTGGATATGAGGGGTG 61.062 60.000 3.32 0.00 0.00 4.61
4 5 0.328450 TTGGCCTGGATATGAGGGGT 60.328 55.000 3.32 0.00 0.00 4.95
5 6 0.852842 TTTGGCCTGGATATGAGGGG 59.147 55.000 3.32 0.00 0.00 4.79
6 7 2.986534 ATTTGGCCTGGATATGAGGG 57.013 50.000 3.32 0.00 0.00 4.30
7 8 4.703575 CACATATTTGGCCTGGATATGAGG 59.296 45.833 26.29 18.39 37.26 3.86
8 9 4.703575 CCACATATTTGGCCTGGATATGAG 59.296 45.833 26.29 21.27 37.26 2.90
9 10 4.665451 CCACATATTTGGCCTGGATATGA 58.335 43.478 26.29 0.00 37.26 2.15
20 21 3.684908 TCCATATCCGCCACATATTTGG 58.315 45.455 3.33 3.33 39.98 3.28
21 22 4.379813 GCTTCCATATCCGCCACATATTTG 60.380 45.833 0.00 0.00 0.00 2.32
22 23 3.758554 GCTTCCATATCCGCCACATATTT 59.241 43.478 0.00 0.00 0.00 1.40
23 24 3.347216 GCTTCCATATCCGCCACATATT 58.653 45.455 0.00 0.00 0.00 1.28
24 25 2.677902 CGCTTCCATATCCGCCACATAT 60.678 50.000 0.00 0.00 0.00 1.78
25 26 1.337728 CGCTTCCATATCCGCCACATA 60.338 52.381 0.00 0.00 0.00 2.29
26 27 0.603707 CGCTTCCATATCCGCCACAT 60.604 55.000 0.00 0.00 0.00 3.21
27 28 1.227527 CGCTTCCATATCCGCCACA 60.228 57.895 0.00 0.00 0.00 4.17
28 29 2.607892 GCGCTTCCATATCCGCCAC 61.608 63.158 0.00 0.00 40.51 5.01
29 30 2.280797 GCGCTTCCATATCCGCCA 60.281 61.111 0.00 0.00 40.51 5.69
31 32 3.050275 GGGCGCTTCCATATCCGC 61.050 66.667 7.64 0.00 45.15 5.54
32 33 2.738521 CGGGCGCTTCCATATCCG 60.739 66.667 7.64 5.02 36.21 4.18
33 34 2.358737 CCGGGCGCTTCCATATCC 60.359 66.667 7.64 0.00 36.21 2.59
34 35 3.050275 GCCGGGCGCTTCCATATC 61.050 66.667 7.64 0.00 36.21 1.63
51 52 3.633094 CTCTGACGTGGTGGAGGCG 62.633 68.421 0.00 0.00 0.00 5.52
52 53 2.262915 CTCTGACGTGGTGGAGGC 59.737 66.667 0.00 0.00 0.00 4.70
53 54 2.262915 GCTCTGACGTGGTGGAGG 59.737 66.667 0.00 0.00 0.00 4.30
54 55 2.262915 GGCTCTGACGTGGTGGAG 59.737 66.667 0.00 0.00 0.00 3.86
55 56 3.680786 CGGCTCTGACGTGGTGGA 61.681 66.667 0.00 0.00 0.00 4.02
56 57 3.680786 TCGGCTCTGACGTGGTGG 61.681 66.667 0.00 0.00 34.61 4.61
57 58 2.430921 GTCGGCTCTGACGTGGTG 60.431 66.667 0.00 0.00 34.61 4.17
58 59 2.910479 TGTCGGCTCTGACGTGGT 60.910 61.111 0.00 0.00 41.87 4.16
59 60 2.126307 CTGTCGGCTCTGACGTGG 60.126 66.667 0.00 0.00 41.87 4.94
60 61 2.807045 GCTGTCGGCTCTGACGTG 60.807 66.667 0.00 1.90 41.87 4.49
61 62 4.057428 GGCTGTCGGCTCTGACGT 62.057 66.667 3.10 0.00 41.87 4.34
62 63 4.803426 GGGCTGTCGGCTCTGACG 62.803 72.222 3.10 0.00 41.87 4.35
63 64 4.803426 CGGGCTGTCGGCTCTGAC 62.803 72.222 1.13 2.00 39.79 3.51
65 66 4.803426 GTCGGGCTGTCGGCTCTG 62.803 72.222 1.13 0.00 39.79 3.35
71 72 4.530857 GATGGGGTCGGGCTGTCG 62.531 72.222 0.00 0.00 0.00 4.35
72 73 4.530857 CGATGGGGTCGGGCTGTC 62.531 72.222 0.00 0.00 46.47 3.51
80 81 4.812814 GCAATTTGCGATGGGGTC 57.187 55.556 5.49 0.00 31.71 4.46
89 90 1.805943 GGTGGATTTGGTGCAATTTGC 59.194 47.619 14.49 14.49 45.29 3.68
90 91 2.425539 GGGTGGATTTGGTGCAATTTG 58.574 47.619 0.00 0.00 0.00 2.32
91 92 1.350684 GGGGTGGATTTGGTGCAATTT 59.649 47.619 0.00 0.00 0.00 1.82
92 93 0.983467 GGGGTGGATTTGGTGCAATT 59.017 50.000 0.00 0.00 0.00 2.32
93 94 1.257055 CGGGGTGGATTTGGTGCAAT 61.257 55.000 0.00 0.00 0.00 3.56
94 95 1.905843 CGGGGTGGATTTGGTGCAA 60.906 57.895 0.00 0.00 0.00 4.08
95 96 2.282816 CGGGGTGGATTTGGTGCA 60.283 61.111 0.00 0.00 0.00 4.57
96 97 3.068064 CCGGGGTGGATTTGGTGC 61.068 66.667 0.00 0.00 42.00 5.01
97 98 2.760477 TCCGGGGTGGATTTGGTG 59.240 61.111 0.00 0.00 43.74 4.17
112 113 1.814248 GCAAATGGATCCGGTAGGTCC 60.814 57.143 7.39 6.18 37.86 4.46
113 114 1.141053 AGCAAATGGATCCGGTAGGTC 59.859 52.381 7.39 0.00 39.05 3.85
114 115 1.141053 GAGCAAATGGATCCGGTAGGT 59.859 52.381 7.39 2.78 39.05 3.08
115 116 1.873903 CGAGCAAATGGATCCGGTAGG 60.874 57.143 7.39 0.00 39.46 3.18
116 117 1.202533 ACGAGCAAATGGATCCGGTAG 60.203 52.381 7.39 1.31 0.00 3.18
117 118 0.828022 ACGAGCAAATGGATCCGGTA 59.172 50.000 7.39 0.00 0.00 4.02
118 119 0.462047 GACGAGCAAATGGATCCGGT 60.462 55.000 7.39 0.00 0.00 5.28
119 120 0.461870 TGACGAGCAAATGGATCCGG 60.462 55.000 7.39 0.00 0.00 5.14
120 121 0.933097 CTGACGAGCAAATGGATCCG 59.067 55.000 7.39 0.00 0.00 4.18
121 122 0.659957 GCTGACGAGCAAATGGATCC 59.340 55.000 4.20 4.20 45.46 3.36
122 123 0.302890 CGCTGACGAGCAAATGGATC 59.697 55.000 0.00 0.00 46.62 3.36
123 124 1.091771 CCGCTGACGAGCAAATGGAT 61.092 55.000 0.00 0.00 46.62 3.41
124 125 1.741401 CCGCTGACGAGCAAATGGA 60.741 57.895 0.00 0.00 46.62 3.41
125 126 2.753966 CCCGCTGACGAGCAAATGG 61.754 63.158 0.00 0.00 46.62 3.16
126 127 2.787249 CCCGCTGACGAGCAAATG 59.213 61.111 0.00 0.00 46.62 2.32
127 128 3.127533 GCCCGCTGACGAGCAAAT 61.128 61.111 0.00 0.00 46.62 2.32
139 140 4.980805 TGTTGTGGTCTCGCCCGC 62.981 66.667 0.00 0.00 36.04 6.13
150 151 4.212004 CGCAAGATAGTATCCCATGTTGTG 59.788 45.833 6.53 7.25 43.02 3.33
180 182 1.345112 ACCCCACCCACTAAGGATAGG 60.345 57.143 0.00 0.00 41.22 2.57
198 200 5.064325 GGTTCGTATATGGTCTTCACAAACC 59.936 44.000 0.00 0.00 36.03 3.27
216 218 1.555477 TTTCCCGCCCTATGGTTCGT 61.555 55.000 0.00 0.00 0.00 3.85
224 228 2.666098 GGCTCTGTTTCCCGCCCTA 61.666 63.158 0.00 0.00 36.56 3.53
226 230 4.344865 TGGCTCTGTTTCCCGCCC 62.345 66.667 0.00 0.00 41.80 6.13
230 234 2.858745 TGTAAAGTGGCTCTGTTTCCC 58.141 47.619 0.00 0.00 0.00 3.97
231 235 3.630312 TGTTGTAAAGTGGCTCTGTTTCC 59.370 43.478 0.00 0.00 0.00 3.13
279 283 1.760086 ACTCCGGATGCCCTCTCTG 60.760 63.158 3.57 0.00 0.00 3.35
280 284 1.760086 CACTCCGGATGCCCTCTCT 60.760 63.158 3.57 0.00 0.00 3.10
291 295 2.097038 CGAGCTTGAAGCACTCCGG 61.097 63.158 20.45 0.00 45.56 5.14
314 318 1.202758 TGCAGACCCACGAACAATTCT 60.203 47.619 0.00 0.00 0.00 2.40
335 339 1.094073 ATGAGCTGCCACAGATTCGC 61.094 55.000 0.00 0.00 32.44 4.70
336 340 0.656259 CATGAGCTGCCACAGATTCG 59.344 55.000 0.00 0.00 32.44 3.34
341 360 0.733150 CATGTCATGAGCTGCCACAG 59.267 55.000 7.04 0.00 34.12 3.66
388 407 0.471617 CACCATCACCCTCATCCTCC 59.528 60.000 0.00 0.00 0.00 4.30
416 435 4.696402 TCCAAATGCTTCAAAATCATTGGC 59.304 37.500 0.00 0.00 31.53 4.52
462 481 1.451067 AAGCTGAGCTGCATCTTGAC 58.549 50.000 8.16 0.00 39.62 3.18
486 505 8.885494 AAGATTCTGATACATCTGTAGAAAGC 57.115 34.615 0.00 0.00 33.52 3.51
500 519 8.027771 CACATGATGATCTCGAAGATTCTGATA 58.972 37.037 0.00 0.00 34.53 2.15
542 561 4.391216 CCAAATATGCTCCACGAGATCATC 59.609 45.833 0.00 0.00 0.00 2.92
550 569 1.308998 GGGTCCAAATATGCTCCACG 58.691 55.000 0.00 0.00 0.00 4.94
562 583 3.835478 TGGTTTCCATTATGGGTCCAA 57.165 42.857 11.76 0.00 38.32 3.53
654 679 3.188460 GCCAATGTCACACGTAAATGACT 59.812 43.478 20.86 9.25 44.59 3.41
702 737 9.911788 ATCCACATGTCTTAAATTCATACTCTT 57.088 29.630 0.00 0.00 0.00 2.85
716 751 1.762957 CTCCCGGTATCCACATGTCTT 59.237 52.381 0.00 0.00 0.00 3.01
720 755 1.119684 TCACTCCCGGTATCCACATG 58.880 55.000 0.00 0.00 0.00 3.21
770 805 1.745115 CGACACATCCGGGCACATT 60.745 57.895 0.00 0.00 0.00 2.71
782 817 4.388080 CGTACGTCCGGCGACACA 62.388 66.667 22.10 4.50 44.77 3.72
800 835 2.036572 TTGTCAAATCCGGCCCCC 59.963 61.111 0.00 0.00 0.00 5.40
814 850 3.495100 CCAGTAAGAGCAGTTGGACTTGT 60.495 47.826 0.00 0.00 0.00 3.16
827 863 7.184067 ACCCAAAAGTATAGACCAGTAAGAG 57.816 40.000 0.00 0.00 0.00 2.85
828 864 7.563724 AACCCAAAAGTATAGACCAGTAAGA 57.436 36.000 0.00 0.00 0.00 2.10
829 865 8.537858 ACTAACCCAAAAGTATAGACCAGTAAG 58.462 37.037 0.00 0.00 0.00 2.34
830 866 8.439964 ACTAACCCAAAAGTATAGACCAGTAA 57.560 34.615 0.00 0.00 0.00 2.24
831 867 8.439964 AACTAACCCAAAAGTATAGACCAGTA 57.560 34.615 0.00 0.00 0.00 2.74
832 868 6.947376 ACTAACCCAAAAGTATAGACCAGT 57.053 37.500 0.00 0.00 0.00 4.00
833 869 7.391620 TGAACTAACCCAAAAGTATAGACCAG 58.608 38.462 0.00 0.00 0.00 4.00
834 870 7.319052 TGAACTAACCCAAAAGTATAGACCA 57.681 36.000 0.00 0.00 0.00 4.02
835 871 8.803397 ATTGAACTAACCCAAAAGTATAGACC 57.197 34.615 0.00 0.00 0.00 3.85
842 878 9.582648 AACTGTATATTGAACTAACCCAAAAGT 57.417 29.630 0.00 0.00 0.00 2.66
843 879 9.840427 CAACTGTATATTGAACTAACCCAAAAG 57.160 33.333 0.00 0.00 0.00 2.27
844 880 8.301002 GCAACTGTATATTGAACTAACCCAAAA 58.699 33.333 0.00 0.00 0.00 2.44
845 881 7.448777 TGCAACTGTATATTGAACTAACCCAAA 59.551 33.333 0.00 0.00 0.00 3.28
846 882 6.943146 TGCAACTGTATATTGAACTAACCCAA 59.057 34.615 0.00 0.00 0.00 4.12
847 883 6.477253 TGCAACTGTATATTGAACTAACCCA 58.523 36.000 0.00 0.00 0.00 4.51
848 884 6.995511 TGCAACTGTATATTGAACTAACCC 57.004 37.500 0.00 0.00 0.00 4.11
849 885 8.208718 TGATGCAACTGTATATTGAACTAACC 57.791 34.615 0.00 0.00 0.00 2.85
853 889 9.577110 CAAAATGATGCAACTGTATATTGAACT 57.423 29.630 0.00 0.00 0.00 3.01
854 890 8.810427 CCAAAATGATGCAACTGTATATTGAAC 58.190 33.333 0.00 0.00 0.00 3.18
855 891 8.530311 ACCAAAATGATGCAACTGTATATTGAA 58.470 29.630 0.00 0.00 0.00 2.69
856 892 8.065473 ACCAAAATGATGCAACTGTATATTGA 57.935 30.769 0.00 0.00 0.00 2.57
857 893 8.706492 AACCAAAATGATGCAACTGTATATTG 57.294 30.769 0.00 0.00 0.00 1.90
859 895 8.137437 GCTAACCAAAATGATGCAACTGTATAT 58.863 33.333 0.00 0.00 0.00 0.86
860 896 7.479980 GCTAACCAAAATGATGCAACTGTATA 58.520 34.615 0.00 0.00 0.00 1.47
861 897 6.332630 GCTAACCAAAATGATGCAACTGTAT 58.667 36.000 0.00 0.00 0.00 2.29
862 898 5.618863 CGCTAACCAAAATGATGCAACTGTA 60.619 40.000 0.00 0.00 0.00 2.74
863 899 4.559153 GCTAACCAAAATGATGCAACTGT 58.441 39.130 0.00 0.00 0.00 3.55
864 900 3.609373 CGCTAACCAAAATGATGCAACTG 59.391 43.478 0.00 0.00 0.00 3.16
865 901 3.505680 TCGCTAACCAAAATGATGCAACT 59.494 39.130 0.00 0.00 0.00 3.16
866 902 3.608073 GTCGCTAACCAAAATGATGCAAC 59.392 43.478 0.00 0.00 0.00 4.17
867 903 3.832276 GTCGCTAACCAAAATGATGCAA 58.168 40.909 0.00 0.00 0.00 4.08
868 904 3.485947 GTCGCTAACCAAAATGATGCA 57.514 42.857 0.00 0.00 0.00 3.96
890 926 0.958382 TTAACTGGTCATGCCCGTGC 60.958 55.000 4.51 0.00 34.78 5.34
891 927 0.802494 GTTAACTGGTCATGCCCGTG 59.198 55.000 0.00 0.00 34.78 4.94
892 928 0.398696 TGTTAACTGGTCATGCCCGT 59.601 50.000 7.22 1.43 36.17 5.28
893 929 1.529226 TTGTTAACTGGTCATGCCCG 58.471 50.000 7.22 0.86 36.04 6.13
894 930 2.029380 GGTTTGTTAACTGGTCATGCCC 60.029 50.000 7.22 0.00 36.04 5.36
895 931 2.351350 CGGTTTGTTAACTGGTCATGCC 60.351 50.000 7.22 0.00 37.06 4.40
896 932 2.928694 CGGTTTGTTAACTGGTCATGC 58.071 47.619 7.22 0.00 37.06 4.06
903 939 1.081708 GGCGCCGGTTTGTTAACTG 60.082 57.895 12.58 0.00 39.82 3.16
904 940 2.263021 GGGCGCCGGTTTGTTAACT 61.263 57.895 22.54 0.00 34.59 2.24
905 941 2.256158 GGGCGCCGGTTTGTTAAC 59.744 61.111 22.54 0.00 0.00 2.01
906 942 3.355455 CGGGCGCCGGTTTGTTAA 61.355 61.111 24.78 0.00 44.15 2.01
963 999 1.774894 TTGGGGGTTTCGACTCTGGG 61.775 60.000 0.00 0.00 0.00 4.45
964 1000 0.109723 TTTGGGGGTTTCGACTCTGG 59.890 55.000 0.00 0.00 0.00 3.86
965 1001 1.235724 GTTTGGGGGTTTCGACTCTG 58.764 55.000 0.00 0.00 0.00 3.35
966 1002 0.109913 GGTTTGGGGGTTTCGACTCT 59.890 55.000 0.00 0.00 0.00 3.24
967 1003 0.179012 TGGTTTGGGGGTTTCGACTC 60.179 55.000 0.00 0.00 0.00 3.36
968 1004 0.259356 TTGGTTTGGGGGTTTCGACT 59.741 50.000 0.00 0.00 0.00 4.18
1302 1374 0.949105 ACTTGTTCATCACCGCCGAC 60.949 55.000 0.00 0.00 0.00 4.79
1305 1377 1.875963 CCACTTGTTCATCACCGCC 59.124 57.895 0.00 0.00 0.00 6.13
1440 1538 5.438761 ACATTAACCAACAAGCAGAGAAC 57.561 39.130 0.00 0.00 0.00 3.01
1462 1560 1.890894 GTCCTAAGCAGAGCACCGA 59.109 57.895 0.00 0.00 0.00 4.69
1463 1561 1.517257 CGTCCTAAGCAGAGCACCG 60.517 63.158 0.00 0.00 0.00 4.94
1542 1640 6.634805 TCACTTCATCTACTCATTCAGTTCC 58.365 40.000 0.00 0.00 36.43 3.62
1547 1645 6.276091 CCGAATCACTTCATCTACTCATTCA 58.724 40.000 0.00 0.00 0.00 2.57
1550 1648 4.343526 AGCCGAATCACTTCATCTACTCAT 59.656 41.667 0.00 0.00 0.00 2.90
1586 1684 4.164604 TGGACGGCCAATACCTAAATTAGT 59.835 41.667 8.12 0.00 42.49 2.24
1601 1699 3.058224 GTGCAATCTAATAATGGACGGCC 60.058 47.826 0.00 0.00 0.00 6.13
1602 1700 4.147219 GTGCAATCTAATAATGGACGGC 57.853 45.455 0.00 0.00 0.00 5.68
1605 1703 5.049405 CCCTTCGTGCAATCTAATAATGGAC 60.049 44.000 0.00 0.00 32.78 4.02
1606 1704 5.063204 CCCTTCGTGCAATCTAATAATGGA 58.937 41.667 0.00 0.00 0.00 3.41
1607 1705 5.063204 TCCCTTCGTGCAATCTAATAATGG 58.937 41.667 0.00 0.00 0.00 3.16
1608 1706 6.618287 TTCCCTTCGTGCAATCTAATAATG 57.382 37.500 0.00 0.00 0.00 1.90
1611 1709 7.297936 TCTATTCCCTTCGTGCAATCTAATA 57.702 36.000 0.00 0.00 0.00 0.98
1621 1719 5.589192 ACGATTACTTCTATTCCCTTCGTG 58.411 41.667 0.00 0.00 36.13 4.35
1622 1720 5.848833 ACGATTACTTCTATTCCCTTCGT 57.151 39.130 0.00 0.00 32.99 3.85
1627 1725 7.605410 TTTCACAACGATTACTTCTATTCCC 57.395 36.000 0.00 0.00 0.00 3.97
1643 1741 4.379793 CGTGCAAAGCTAAGATTTCACAAC 59.620 41.667 0.00 0.00 0.00 3.32
1694 1793 4.202441 AGTTCCATCATGAATCCGGAAAG 58.798 43.478 9.01 0.00 37.49 2.62
1764 1863 0.243365 GCATCAACGAAACATGCCCA 59.757 50.000 0.00 0.00 37.54 5.36
1768 1867 0.887247 TGGGGCATCAACGAAACATG 59.113 50.000 0.00 0.00 0.00 3.21
1775 1874 2.672651 TGCACTGGGGCATCAACG 60.673 61.111 0.00 0.00 39.25 4.10
1788 1887 0.109132 CCTTGGCCGAAAATCTGCAC 60.109 55.000 0.00 0.00 0.00 4.57
1799 1898 2.409870 GCACAGGATTCCTTGGCCG 61.410 63.158 1.28 0.00 0.00 6.13
1834 1933 7.311234 CCATTCCCCTCACAATTTCCTAAAAAT 60.311 37.037 0.00 0.00 0.00 1.82
1876 1975 2.986479 GCTCGTTGCGAAAAATTGGATT 59.014 40.909 0.00 0.00 34.74 3.01
1881 1980 2.393764 CTTGGCTCGTTGCGAAAAATT 58.606 42.857 0.00 0.00 44.05 1.82
1883 1982 0.593773 GCTTGGCTCGTTGCGAAAAA 60.594 50.000 0.00 0.00 44.05 1.94
1884 1983 1.008995 GCTTGGCTCGTTGCGAAAA 60.009 52.632 0.00 0.00 44.05 2.29
1888 1988 2.116736 TTCTTGCTTGGCTCGTTGCG 62.117 55.000 0.00 0.00 44.05 4.85
1952 2052 1.675720 GGCTGTGTTTGGTTGGTGCT 61.676 55.000 0.00 0.00 0.00 4.40
1978 2078 4.144051 GCGAAATTATTTGCGGATTGTACG 59.856 41.667 0.00 0.00 36.26 3.67
1988 2088 6.611381 TGATATAGCCTGCGAAATTATTTGC 58.389 36.000 0.00 0.47 44.81 3.68
2020 2120 2.099756 GAGGCTATCAATGTTGCCCAAC 59.900 50.000 4.26 4.26 45.94 3.77
2037 2137 1.137282 ACCGCTAGCTAAGAAAGAGGC 59.863 52.381 13.93 0.00 33.92 4.70
2045 2146 7.948278 AATATTTCTGTTACCGCTAGCTAAG 57.052 36.000 13.93 3.90 0.00 2.18
2046 2147 8.609176 CAAAATATTTCTGTTACCGCTAGCTAA 58.391 33.333 13.93 2.56 0.00 3.09
2048 2149 6.821665 TCAAAATATTTCTGTTACCGCTAGCT 59.178 34.615 13.93 0.00 0.00 3.32
2049 2150 7.011828 TCAAAATATTTCTGTTACCGCTAGC 57.988 36.000 4.06 4.06 0.00 3.42
2093 2194 8.980610 CAGAAATGCTCATAGAATCTAGTTCAG 58.019 37.037 0.00 0.00 39.39 3.02
2143 2244 0.590195 CACTCAGCAGACTGGTTTGC 59.410 55.000 3.93 7.97 44.59 3.68
2171 2272 8.169977 TCTGAAACAGAACAAGCATTCTAATT 57.830 30.769 0.00 0.00 37.57 1.40
2172 2273 7.446625 ACTCTGAAACAGAACAAGCATTCTAAT 59.553 33.333 0.00 0.00 40.18 1.73
2228 2329 2.043115 TCTCCTCCCTACTCTGCTTGAA 59.957 50.000 0.00 0.00 0.00 2.69
2336 2442 6.775708 ACTCCAGCCATACTACAAGTAAAAA 58.224 36.000 0.00 0.00 33.89 1.94
2337 2443 6.368779 ACTCCAGCCATACTACAAGTAAAA 57.631 37.500 0.00 0.00 33.89 1.52
2375 2481 7.990886 AGAAGTACAAACAGAAGGTATGAAACA 59.009 33.333 0.00 0.00 0.00 2.83
2404 2510 6.015180 ACAGCAGACATGATTAAACACCAATT 60.015 34.615 0.00 0.00 0.00 2.32
2492 2605 7.466805 CATGGTTAGTGTAAGACATGTTCATG 58.533 38.462 0.00 10.72 33.25 3.07
2700 2820 2.827642 GGGCAGAGTGCTGGATGC 60.828 66.667 0.00 0.00 44.28 3.91
3047 3169 5.357314 GCCTACGGAAGCATATAGACTCATA 59.643 44.000 0.00 0.00 0.00 2.15
3056 3178 4.460263 TCAAATTGCCTACGGAAGCATAT 58.540 39.130 0.00 0.00 39.11 1.78
3075 3197 0.832135 ACCCTCTTGACCTCGCTCAA 60.832 55.000 0.00 0.00 0.00 3.02
3122 3244 4.547532 AGTAGCTCGTGTTAGTCACTTTG 58.452 43.478 0.00 0.00 44.16 2.77
3182 3304 5.559770 TCAAAGACCTGCTTCATGTAATCA 58.440 37.500 0.00 0.00 35.24 2.57
3233 3355 1.335810 ACGTTAGTCAGCTTCACGTCA 59.664 47.619 0.00 0.00 38.32 4.35
3303 3425 0.178964 TCCTTGGCCTTTTCCCACAG 60.179 55.000 3.32 0.00 30.65 3.66
3311 3433 1.351076 CACCCATTTCCTTGGCCTTT 58.649 50.000 3.32 0.00 35.29 3.11
3413 3535 1.272781 GGAGCTTCGTCACATTCTCG 58.727 55.000 0.00 0.00 0.00 4.04
3488 3610 1.347817 GCACGTCCTTCTGCTCTTCG 61.348 60.000 0.00 0.00 0.00 3.79
3618 3740 0.391661 TCTTTGATCTGCTGCCGGAC 60.392 55.000 5.05 0.00 0.00 4.79
3659 3781 0.401356 TGAGCAGCTTCCCAATGTCA 59.599 50.000 0.00 0.00 0.00 3.58
3729 3854 7.308710 GGAATCATAAGAAACCAACGGTGTAAA 60.309 37.037 0.00 0.00 35.34 2.01
3734 3859 4.918588 AGGAATCATAAGAAACCAACGGT 58.081 39.130 0.00 0.00 37.65 4.83
3738 3863 5.414454 CACGGAAGGAATCATAAGAAACCAA 59.586 40.000 0.00 0.00 0.00 3.67
3748 3873 3.328382 TTCGTTCACGGAAGGAATCAT 57.672 42.857 13.93 0.00 40.10 2.45
3782 3907 8.536340 AAAGATCCCCTCGGACTATATAATAC 57.464 38.462 0.00 0.00 42.48 1.89
3792 3917 0.753867 GGAGAAAGATCCCCTCGGAC 59.246 60.000 0.00 0.00 42.48 4.79
3793 3918 0.637195 AGGAGAAAGATCCCCTCGGA 59.363 55.000 0.00 0.00 44.33 4.55
3795 3920 1.609555 CGTAGGAGAAAGATCCCCTCG 59.390 57.143 0.00 0.00 40.53 4.63
3796 3921 2.668625 ACGTAGGAGAAAGATCCCCTC 58.331 52.381 0.00 0.00 40.53 4.30
3799 3924 3.055312 ACCAAACGTAGGAGAAAGATCCC 60.055 47.826 13.37 0.00 40.53 3.85
3801 3926 3.371285 GCACCAAACGTAGGAGAAAGATC 59.629 47.826 13.37 0.00 0.00 2.75
3803 3928 2.367567 AGCACCAAACGTAGGAGAAAGA 59.632 45.455 13.37 0.00 0.00 2.52
3805 3930 2.922740 AGCACCAAACGTAGGAGAAA 57.077 45.000 13.37 0.00 0.00 2.52
3806 3931 2.367567 AGAAGCACCAAACGTAGGAGAA 59.632 45.455 13.37 0.00 0.00 2.87
3807 3932 1.968493 AGAAGCACCAAACGTAGGAGA 59.032 47.619 13.37 0.00 0.00 3.71
3808 3933 2.069273 CAGAAGCACCAAACGTAGGAG 58.931 52.381 13.37 6.96 0.00 3.69
3809 3934 1.689813 TCAGAAGCACCAAACGTAGGA 59.310 47.619 13.37 0.00 0.00 2.94
3810 3935 2.163818 TCAGAAGCACCAAACGTAGG 57.836 50.000 5.48 5.48 0.00 3.18
3811 3936 2.159653 GCATCAGAAGCACCAAACGTAG 60.160 50.000 0.00 0.00 0.00 3.51
3812 3937 1.804151 GCATCAGAAGCACCAAACGTA 59.196 47.619 0.00 0.00 0.00 3.57
3813 3938 0.593128 GCATCAGAAGCACCAAACGT 59.407 50.000 0.00 0.00 0.00 3.99
3814 3939 0.109597 GGCATCAGAAGCACCAAACG 60.110 55.000 0.00 0.00 0.00 3.60
3815 3940 0.244721 GGGCATCAGAAGCACCAAAC 59.755 55.000 0.00 0.00 0.00 2.93
3816 3941 0.112995 AGGGCATCAGAAGCACCAAA 59.887 50.000 0.00 0.00 35.54 3.28
3817 3942 0.112995 AAGGGCATCAGAAGCACCAA 59.887 50.000 0.00 0.00 35.54 3.67
3818 3943 0.609957 CAAGGGCATCAGAAGCACCA 60.610 55.000 0.00 0.00 35.54 4.17
3819 3944 0.610232 ACAAGGGCATCAGAAGCACC 60.610 55.000 0.00 0.00 35.54 5.01
3820 3945 1.200948 GAACAAGGGCATCAGAAGCAC 59.799 52.381 0.00 0.00 35.04 4.40
3821 3946 1.074405 AGAACAAGGGCATCAGAAGCA 59.926 47.619 0.00 0.00 0.00 3.91
3822 3947 1.471684 CAGAACAAGGGCATCAGAAGC 59.528 52.381 0.00 0.00 0.00 3.86
3823 3948 2.089980 CCAGAACAAGGGCATCAGAAG 58.910 52.381 0.00 0.00 0.00 2.85
3824 3949 2.205022 CCAGAACAAGGGCATCAGAA 57.795 50.000 0.00 0.00 0.00 3.02
3825 3950 3.963733 CCAGAACAAGGGCATCAGA 57.036 52.632 0.00 0.00 0.00 3.27
3864 3989 2.033801 TGCTTTCTGCTTCTTCTTGCAC 59.966 45.455 0.00 0.00 43.37 4.57
3915 4052 2.188818 AGGAGAAAGATCCCCTCAGG 57.811 55.000 8.32 0.00 40.53 3.86
3994 4139 2.820178 TCCTTGCTCCAGTACTCATCA 58.180 47.619 0.00 0.00 0.00 3.07
3995 4140 3.726607 CATCCTTGCTCCAGTACTCATC 58.273 50.000 0.00 0.00 0.00 2.92
3996 4141 2.158842 GCATCCTTGCTCCAGTACTCAT 60.159 50.000 0.00 0.00 45.77 2.90
4033 4181 2.478134 CACGCAGAGAAAGAGAACAAGG 59.522 50.000 0.00 0.00 0.00 3.61
4037 4185 0.793250 GGCACGCAGAGAAAGAGAAC 59.207 55.000 0.00 0.00 0.00 3.01
4042 4190 0.725686 CTGATGGCACGCAGAGAAAG 59.274 55.000 12.45 0.00 35.78 2.62
4045 4193 0.035317 AAACTGATGGCACGCAGAGA 59.965 50.000 21.69 0.00 36.94 3.10
4046 4194 0.445436 GAAACTGATGGCACGCAGAG 59.555 55.000 21.69 2.99 36.94 3.35
4056 4204 3.504906 AGACACAAGCATGGAAACTGATG 59.495 43.478 0.00 0.00 0.00 3.07
4057 4205 3.759581 AGACACAAGCATGGAAACTGAT 58.240 40.909 0.00 0.00 0.00 2.90
4072 4224 5.863965 TCACCTGATATTCACAAAGACACA 58.136 37.500 0.00 0.00 0.00 3.72
4076 4228 7.552687 GTGGTTATCACCTGATATTCACAAAGA 59.447 37.037 16.00 0.00 44.61 2.52
4086 4242 6.299922 TGTTGTTTGTGGTTATCACCTGATA 58.700 36.000 0.00 0.00 45.48 2.15
4088 4244 4.527944 TGTTGTTTGTGGTTATCACCTGA 58.472 39.130 0.00 0.00 45.48 3.86
4092 4251 5.000012 TGGTTGTTGTTTGTGGTTATCAC 58.000 39.130 0.00 0.00 46.23 3.06
4096 4255 6.377429 TGTTATCTGGTTGTTGTTTGTGGTTA 59.623 34.615 0.00 0.00 0.00 2.85
4153 4315 6.811954 TCCCTTGGTTTTTAGACATGTTTTC 58.188 36.000 0.00 0.00 0.00 2.29
4181 4343 6.079712 AGTTCAAGTAAAGGAGGGCAATAT 57.920 37.500 0.00 0.00 0.00 1.28
4182 4344 5.514500 AGTTCAAGTAAAGGAGGGCAATA 57.486 39.130 0.00 0.00 0.00 1.90
4183 4345 4.388577 AGTTCAAGTAAAGGAGGGCAAT 57.611 40.909 0.00 0.00 0.00 3.56
4184 4346 3.876309 AGTTCAAGTAAAGGAGGGCAA 57.124 42.857 0.00 0.00 0.00 4.52
4185 4347 3.497942 GGAAGTTCAAGTAAAGGAGGGCA 60.498 47.826 5.01 0.00 0.00 5.36
4186 4348 3.082548 GGAAGTTCAAGTAAAGGAGGGC 58.917 50.000 5.01 0.00 0.00 5.19
4204 4366 0.329261 CTCTCTGCACCCCAATGGAA 59.671 55.000 0.00 0.00 38.00 3.53
4214 4376 4.997395 TCATTGTTAAAGACCTCTCTGCAC 59.003 41.667 0.00 0.00 0.00 4.57
4217 4379 8.449397 CAGATTTCATTGTTAAAGACCTCTCTG 58.551 37.037 0.00 0.00 0.00 3.35
4218 4380 8.378565 TCAGATTTCATTGTTAAAGACCTCTCT 58.621 33.333 0.00 0.00 0.00 3.10
4219 4381 8.553459 TCAGATTTCATTGTTAAAGACCTCTC 57.447 34.615 0.00 0.00 0.00 3.20
4220 4382 8.924511 TTCAGATTTCATTGTTAAAGACCTCT 57.075 30.769 0.00 0.00 0.00 3.69
4221 4383 9.617975 CTTTCAGATTTCATTGTTAAAGACCTC 57.382 33.333 0.00 0.00 0.00 3.85
4229 4391 9.515020 GTGTGTTTCTTTCAGATTTCATTGTTA 57.485 29.630 0.00 0.00 0.00 2.41
4280 4452 8.345565 GCATAATGAGAACATAAGAACCGAATT 58.654 33.333 0.00 0.00 35.50 2.17
4285 4457 7.792374 TGAGCATAATGAGAACATAAGAACC 57.208 36.000 0.00 0.00 35.50 3.62
4299 4471 2.606308 GGCGGCAATCTTGAGCATAATG 60.606 50.000 3.07 0.00 35.86 1.90
4367 4596 4.376008 CCGACAACAGTAACATGAACTTCG 60.376 45.833 0.00 8.44 0.00 3.79
4409 4638 0.324830 GTACAGAGGAGAGGGCTGGT 60.325 60.000 0.00 0.00 34.05 4.00
4480 4720 3.074390 TGGATGGGCTTCTTTCTTTCTGA 59.926 43.478 0.00 0.00 0.00 3.27
4481 4721 3.424703 TGGATGGGCTTCTTTCTTTCTG 58.575 45.455 0.00 0.00 0.00 3.02
4482 4722 3.814504 TGGATGGGCTTCTTTCTTTCT 57.185 42.857 0.00 0.00 0.00 2.52
4496 4736 2.684881 GTTGTCAGGCTGTAATGGATGG 59.315 50.000 15.27 0.00 0.00 3.51
4523 4763 1.396648 CATCACAATCTGGCGCGTTTA 59.603 47.619 8.43 0.00 0.00 2.01
4543 4783 4.085884 CGCGACACAATGGTTTGTATAAC 58.914 43.478 0.00 0.00 44.24 1.89
4551 4791 1.567537 CGAACGCGACACAATGGTT 59.432 52.632 15.93 0.00 40.82 3.67
4574 4814 2.571528 CGTAGCTGCGAGTCATGAC 58.428 57.895 20.27 18.47 0.00 3.06
4589 4829 3.704843 CGCTAGCTGCATTGCGTA 58.295 55.556 13.93 0.00 42.93 4.42
4595 4835 2.069465 CTCGACCTCGCTAGCTGCAT 62.069 60.000 13.93 0.00 43.06 3.96
4651 4891 4.099266 TGCAAAGCTTTCACCATTGTTACT 59.901 37.500 9.23 0.00 0.00 2.24
4667 4907 1.509923 GCATCTGGGACTGCAAAGC 59.490 57.895 0.00 0.00 38.28 3.51
4682 4922 0.108138 GGTACGAGCAAGAGTGGCAT 60.108 55.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.