Multiple sequence alignment - TraesCS2A01G552400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G552400 chr2A 100.000 3528 0 0 1 3528 758508544 758512071 0.000000e+00 6516.0
1 TraesCS2A01G552400 chr2A 97.662 385 4 1 2579 2958 758511058 758511442 0.000000e+00 656.0
2 TraesCS2A01G552400 chr2A 97.662 385 4 1 2515 2899 758511122 758511501 0.000000e+00 656.0
3 TraesCS2A01G552400 chr2A 97.196 321 4 1 2643 2958 758511058 758511378 4.010000e-149 538.0
4 TraesCS2A01G552400 chr2A 97.196 321 4 1 2515 2835 758511186 758511501 4.010000e-149 538.0
5 TraesCS2A01G552400 chr2A 96.887 257 3 3 2707 2958 758511058 758511314 3.260000e-115 425.0
6 TraesCS2A01G552400 chr2A 96.887 257 3 3 2515 2771 758511250 758511501 3.260000e-115 425.0
7 TraesCS2A01G552400 chr2A 96.373 193 2 1 2771 2958 758511058 758511250 2.640000e-81 313.0
8 TraesCS2A01G552400 chr2A 96.373 193 2 1 2515 2707 758511314 758511501 2.640000e-81 313.0
9 TraesCS2A01G552400 chr2A 94.574 129 2 1 2835 2958 758511058 758511186 9.990000e-46 195.0
10 TraesCS2A01G552400 chr2A 94.574 129 2 1 2515 2643 758511378 758511501 9.990000e-46 195.0
11 TraesCS2A01G552400 chr2A 92.000 125 10 0 1753 1877 572486445 572486321 3.620000e-40 176.0
12 TraesCS2A01G552400 chr2A 88.406 138 16 0 1220 1357 572487554 572487417 2.180000e-37 167.0
13 TraesCS2A01G552400 chr2D 95.466 1544 46 11 1 1534 627972842 627974371 0.000000e+00 2442.0
14 TraesCS2A01G552400 chr2D 91.418 1037 42 9 1569 2561 627974459 627975492 0.000000e+00 1378.0
15 TraesCS2A01G552400 chr2D 86.813 455 29 13 2899 3332 627975446 627975890 2.460000e-131 479.0
16 TraesCS2A01G552400 chr2D 91.935 186 10 2 3343 3528 627975930 627976110 4.520000e-64 255.0
17 TraesCS2A01G552400 chr2D 92.000 125 10 0 1753 1877 417626495 417626619 3.620000e-40 176.0
18 TraesCS2A01G552400 chr2D 88.489 139 16 0 1220 1358 417625368 417625506 6.060000e-38 169.0
19 TraesCS2A01G552400 chr2D 80.165 121 22 2 1758 1877 556350972 556351091 4.850000e-14 89.8
20 TraesCS2A01G552400 chr2D 80.833 120 17 5 1758 1874 556365925 556366041 4.850000e-14 89.8
21 TraesCS2A01G552400 chr2D 100.000 47 0 0 2579 2625 627975446 627975492 1.740000e-13 87.9
22 TraesCS2A01G552400 chr2D 100.000 47 0 0 2643 2689 627975446 627975492 1.740000e-13 87.9
23 TraesCS2A01G552400 chr2D 100.000 47 0 0 2707 2753 627975446 627975492 1.740000e-13 87.9
24 TraesCS2A01G552400 chr2D 100.000 47 0 0 2771 2817 627975446 627975492 1.740000e-13 87.9
25 TraesCS2A01G552400 chr2D 100.000 47 0 0 2835 2881 627975446 627975492 1.740000e-13 87.9
26 TraesCS2A01G552400 chr2D 80.328 122 14 7 1758 1874 556619578 556619694 2.260000e-12 84.2
27 TraesCS2A01G552400 chr2B 92.016 1240 71 11 296 1520 771042348 771043574 0.000000e+00 1716.0
28 TraesCS2A01G552400 chr2B 84.460 991 78 37 1569 2495 771043643 771044621 0.000000e+00 907.0
29 TraesCS2A01G552400 chr2B 86.066 244 22 11 1 242 771042102 771042335 5.850000e-63 252.0
30 TraesCS2A01G552400 chr2B 88.333 180 13 4 3161 3332 771044791 771044970 3.570000e-50 209.0
31 TraesCS2A01G552400 chr2B 91.200 125 11 0 1753 1877 489850328 489850452 1.680000e-38 171.0
32 TraesCS2A01G552400 chr2B 88.321 137 16 0 1222 1358 489849194 489849330 7.830000e-37 165.0
33 TraesCS2A01G552400 chr2B 80.328 122 14 7 1758 1874 663899191 663899307 2.260000e-12 84.2
34 TraesCS2A01G552400 chr2B 96.875 32 1 0 3420 3451 771045373 771045404 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G552400 chr2A 758508544 758512071 3527 False 979.090909 6516 96.853091 1 3528 11 chr2A.!!$F1 3527
1 TraesCS2A01G552400 chr2D 627972842 627976110 3268 False 554.833333 2442 96.181333 1 3528 9 chr2D.!!$F5 3527
2 TraesCS2A01G552400 chr2B 771042102 771045404 3302 False 627.740000 1716 89.550000 1 3451 5 chr2B.!!$F3 3450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
980 988 2.498644 GCTCTTGGCTTCCTAAAGGT 57.501 50.0 0.00 0.0 38.06 3.50 F
1563 1581 0.036448 TTCAGAGTCTCTCGACGGGT 59.964 55.0 0.00 0.0 44.93 5.28 F
2181 2300 0.037326 TCTGAAAGCAACTCCGCGAT 60.037 50.0 8.23 0.0 36.85 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2171 2290 0.034896 AACTTCCACATCGCGGAGTT 59.965 50.0 6.13 3.03 33.01 3.01 R
2525 2674 0.035152 TAGAGACGGCCGTTGTCCTA 60.035 55.0 34.65 24.85 37.04 2.94 R
3015 3197 0.245539 GCGACCTGTTGCCAGTAGTA 59.754 55.0 0.00 0.00 36.95 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 8.150945 AGTTACTCATGTAGTTTGATGTTGACT 58.849 33.333 3.63 0.00 39.80 3.41
67 68 3.261580 TGATGTTGACTATTCACTGCCG 58.738 45.455 0.00 0.00 0.00 5.69
70 71 3.845178 TGTTGACTATTCACTGCCGTAG 58.155 45.455 0.00 0.00 0.00 3.51
264 267 2.831685 TCTGCGCTTCCAGTTTAGAA 57.168 45.000 9.73 0.00 34.47 2.10
270 273 5.695818 TGCGCTTCCAGTTTAGAATTAAAC 58.304 37.500 9.73 2.74 45.81 2.01
848 853 5.036737 CGTCAAAAGGGCATTTATGTCATC 58.963 41.667 0.00 0.00 33.08 2.92
914 919 5.857517 GTGCTAATGACGTATAGCTCTAACC 59.142 44.000 21.15 5.97 36.58 2.85
980 988 2.498644 GCTCTTGGCTTCCTAAAGGT 57.501 50.000 0.00 0.00 38.06 3.50
1006 1020 5.394738 CATAGTACTCTACTCCAATGGGGA 58.605 45.833 5.97 0.00 45.89 4.81
1029 1043 1.133823 TCACCATGCTGTGACAAGGTT 60.134 47.619 1.13 0.00 39.54 3.50
1053 1067 3.561313 GCCTAAAGAAAGGTCCATGGACA 60.561 47.826 38.83 19.61 46.20 4.02
1054 1068 4.860022 CCTAAAGAAAGGTCCATGGACAT 58.140 43.478 38.83 33.09 46.20 3.06
1065 1079 1.346062 CATGGACATCGGAGGAGGAT 58.654 55.000 0.00 0.00 0.00 3.24
1098 1112 1.524002 CCACATCGAGGAGCATGGT 59.476 57.895 3.06 0.00 0.00 3.55
1101 1115 1.126488 ACATCGAGGAGCATGGTCAT 58.874 50.000 25.18 19.58 0.00 3.06
1199 1213 1.068055 GGCGTCTTTCTACGGAGTTGA 60.068 52.381 0.00 0.00 37.78 3.18
1247 1261 2.345244 CAGAGGTGCGGCAAGAGT 59.655 61.111 3.23 0.00 0.00 3.24
1365 1379 0.544223 TGGCAACAGGTGTGTAGTGT 59.456 50.000 0.00 0.00 46.17 3.55
1423 1441 3.651423 ACAGTTACCAACTTAAGCTCCCT 59.349 43.478 1.29 0.00 40.46 4.20
1488 1506 1.995376 ACCTGCATTCTTTTTCGGGT 58.005 45.000 0.00 0.00 33.59 5.28
1534 1552 2.899900 ACCTTGTCAGACTGCTGTATGA 59.100 45.455 15.98 15.98 41.46 2.15
1535 1553 3.324846 ACCTTGTCAGACTGCTGTATGAA 59.675 43.478 20.64 7.46 44.61 2.57
1536 1554 4.019860 ACCTTGTCAGACTGCTGTATGAAT 60.020 41.667 20.64 4.15 44.61 2.57
1539 1557 6.765036 CCTTGTCAGACTGCTGTATGAATATT 59.235 38.462 20.64 0.00 44.61 1.28
1540 1558 7.042187 CCTTGTCAGACTGCTGTATGAATATTC 60.042 40.741 20.64 8.60 44.61 1.75
1542 1560 7.559486 TGTCAGACTGCTGTATGAATATTCTT 58.441 34.615 20.64 12.31 44.61 2.52
1543 1561 8.043113 TGTCAGACTGCTGTATGAATATTCTTT 58.957 33.333 20.64 6.83 44.61 2.52
1545 1563 9.453572 TCAGACTGCTGTATGAATATTCTTTTT 57.546 29.630 17.36 2.30 40.87 1.94
1546 1564 9.713740 CAGACTGCTGTATGAATATTCTTTTTC 57.286 33.333 16.24 5.74 37.58 2.29
1547 1565 9.453572 AGACTGCTGTATGAATATTCTTTTTCA 57.546 29.630 16.24 9.20 36.38 2.69
1549 1567 9.453572 ACTGCTGTATGAATATTCTTTTTCAGA 57.546 29.630 16.24 8.65 35.47 3.27
1550 1568 9.932699 CTGCTGTATGAATATTCTTTTTCAGAG 57.067 33.333 16.24 12.43 35.47 3.35
1551 1569 9.453572 TGCTGTATGAATATTCTTTTTCAGAGT 57.546 29.630 16.24 0.00 35.47 3.24
1552 1570 9.928236 GCTGTATGAATATTCTTTTTCAGAGTC 57.072 33.333 16.24 4.95 35.47 3.36
1559 1577 8.696410 AATATTCTTTTTCAGAGTCTCTCGAC 57.304 34.615 0.00 0.00 40.54 4.20
1560 1578 4.148563 TCTTTTTCAGAGTCTCTCGACG 57.851 45.455 0.00 0.00 44.93 5.12
1561 1579 2.991434 TTTTCAGAGTCTCTCGACGG 57.009 50.000 0.00 0.00 44.93 4.79
1562 1580 1.166129 TTTCAGAGTCTCTCGACGGG 58.834 55.000 0.00 0.00 44.93 5.28
1563 1581 0.036448 TTCAGAGTCTCTCGACGGGT 59.964 55.000 0.00 0.00 44.93 5.28
1564 1582 0.673956 TCAGAGTCTCTCGACGGGTG 60.674 60.000 0.00 0.00 44.93 4.61
1565 1583 0.956410 CAGAGTCTCTCGACGGGTGT 60.956 60.000 0.00 0.00 44.93 4.16
1880 1969 4.263572 CCGTCACCCACAAGGCCA 62.264 66.667 5.01 0.00 40.58 5.36
1884 1973 2.123511 CACCCACAAGGCCACCAA 60.124 61.111 5.01 0.00 40.58 3.67
1894 1983 4.021925 GCCACCAACGGAGCTCCT 62.022 66.667 29.73 14.52 0.00 3.69
1917 2033 2.031012 CACCGCAGCCAGTCTCAA 59.969 61.111 0.00 0.00 0.00 3.02
1980 2096 1.227497 GCCTGGCTCGAGAATCCAG 60.227 63.158 23.44 23.44 45.24 3.86
2023 2139 1.064166 CCAACCTCAATCCCTCTGCAT 60.064 52.381 0.00 0.00 0.00 3.96
2050 2166 1.992277 CCTGCCAGAGCCTACCACT 60.992 63.158 0.00 0.00 38.69 4.00
2051 2167 1.519719 CTGCCAGAGCCTACCACTC 59.480 63.158 0.00 0.00 38.69 3.51
2119 2238 1.841556 GGAGTCACCCACCTCCACA 60.842 63.158 0.00 0.00 45.47 4.17
2155 2274 6.321945 TCGGTAATAATAACAGTGTCAGCCTA 59.678 38.462 0.00 0.00 0.00 3.93
2159 2278 1.568504 TAACAGTGTCAGCCTAGGGG 58.431 55.000 11.72 0.00 0.00 4.79
2171 2290 1.596934 CTAGGGGCGTCTGAAAGCA 59.403 57.895 8.33 0.00 34.54 3.91
2174 2293 1.600916 GGGGCGTCTGAAAGCAACT 60.601 57.895 8.33 0.00 34.54 3.16
2177 2296 1.493311 GCGTCTGAAAGCAACTCCG 59.507 57.895 2.09 0.00 0.00 4.63
2181 2300 0.037326 TCTGAAAGCAACTCCGCGAT 60.037 50.000 8.23 0.00 36.85 4.58
2210 2329 0.671251 GAGAAGCGATGATCCGGAGT 59.329 55.000 11.34 0.00 0.00 3.85
2219 2338 0.679960 TGATCCGGAGTGCGAAGAGA 60.680 55.000 11.34 0.00 0.00 3.10
2227 2346 0.664767 AGTGCGAAGAGAACAGCGTC 60.665 55.000 0.00 0.00 0.00 5.19
2229 2348 1.372997 GCGAAGAGAACAGCGTCCA 60.373 57.895 0.00 0.00 0.00 4.02
2243 2362 2.027625 GTCCACAAGTTCCTCCGCG 61.028 63.158 0.00 0.00 0.00 6.46
2282 2401 1.686110 GAAGGCGAGGAGAGGGGAA 60.686 63.158 0.00 0.00 0.00 3.97
2283 2402 1.681486 GAAGGCGAGGAGAGGGGAAG 61.681 65.000 0.00 0.00 0.00 3.46
2326 2451 1.818959 CGTGGTTCCAAGGGACCGTA 61.819 60.000 11.92 0.00 0.00 4.02
2422 2571 4.154347 CTCAGCGGGCAGGTCTCC 62.154 72.222 0.00 0.00 0.00 3.71
2520 2669 3.996621 CCCCCACCCACCAGCATT 61.997 66.667 0.00 0.00 0.00 3.56
2521 2670 2.120274 CCCCACCCACCAGCATTT 59.880 61.111 0.00 0.00 0.00 2.32
2522 2671 1.984026 CCCCACCCACCAGCATTTC 60.984 63.158 0.00 0.00 0.00 2.17
2523 2672 1.077265 CCCACCCACCAGCATTTCT 59.923 57.895 0.00 0.00 0.00 2.52
2524 2673 0.967380 CCCACCCACCAGCATTTCTC 60.967 60.000 0.00 0.00 0.00 2.87
2525 2674 0.038744 CCACCCACCAGCATTTCTCT 59.961 55.000 0.00 0.00 0.00 3.10
2526 2675 1.281867 CCACCCACCAGCATTTCTCTA 59.718 52.381 0.00 0.00 0.00 2.43
2527 2676 2.636830 CACCCACCAGCATTTCTCTAG 58.363 52.381 0.00 0.00 0.00 2.43
2528 2677 1.561542 ACCCACCAGCATTTCTCTAGG 59.438 52.381 0.00 0.00 0.00 3.02
2529 2678 1.839994 CCCACCAGCATTTCTCTAGGA 59.160 52.381 0.00 0.00 0.00 2.94
2530 2679 2.420687 CCCACCAGCATTTCTCTAGGAC 60.421 54.545 0.00 0.00 0.00 3.85
2531 2680 2.237143 CCACCAGCATTTCTCTAGGACA 59.763 50.000 0.00 0.00 0.00 4.02
2532 2681 3.307691 CCACCAGCATTTCTCTAGGACAA 60.308 47.826 0.00 0.00 0.00 3.18
2533 2682 3.686726 CACCAGCATTTCTCTAGGACAAC 59.313 47.826 0.00 0.00 0.00 3.32
2534 2683 2.932614 CCAGCATTTCTCTAGGACAACG 59.067 50.000 0.00 0.00 0.00 4.10
2535 2684 2.932614 CAGCATTTCTCTAGGACAACGG 59.067 50.000 0.00 0.00 0.00 4.44
2536 2685 1.666189 GCATTTCTCTAGGACAACGGC 59.334 52.381 0.00 0.00 0.00 5.68
2537 2686 2.280628 CATTTCTCTAGGACAACGGCC 58.719 52.381 0.00 0.00 0.00 6.13
2538 2687 0.245539 TTTCTCTAGGACAACGGCCG 59.754 55.000 26.86 26.86 0.00 6.13
2539 2688 0.896940 TTCTCTAGGACAACGGCCGT 60.897 55.000 28.70 28.70 0.00 5.68
2540 2689 1.139095 CTCTAGGACAACGGCCGTC 59.861 63.158 34.29 19.71 0.00 4.79
2541 2690 1.303888 TCTAGGACAACGGCCGTCT 60.304 57.895 34.29 25.81 33.73 4.18
2542 2691 1.139095 CTAGGACAACGGCCGTCTC 59.861 63.158 34.29 26.97 33.73 3.36
2543 2692 1.303888 TAGGACAACGGCCGTCTCT 60.304 57.895 34.29 25.65 33.73 3.10
2544 2693 0.035152 TAGGACAACGGCCGTCTCTA 60.035 55.000 34.29 24.65 33.73 2.43
2545 2694 1.153881 GGACAACGGCCGTCTCTAC 60.154 63.158 34.29 19.97 33.73 2.59
2546 2695 1.582968 GACAACGGCCGTCTCTACA 59.417 57.895 34.29 0.00 0.00 2.74
2547 2696 0.172803 GACAACGGCCGTCTCTACAT 59.827 55.000 34.29 11.63 0.00 2.29
2548 2697 0.606604 ACAACGGCCGTCTCTACATT 59.393 50.000 34.29 10.72 0.00 2.71
2549 2698 1.278238 CAACGGCCGTCTCTACATTC 58.722 55.000 34.29 0.00 0.00 2.67
2550 2699 1.135083 CAACGGCCGTCTCTACATTCT 60.135 52.381 34.29 8.92 0.00 2.40
2551 2700 1.183549 ACGGCCGTCTCTACATTCTT 58.816 50.000 28.70 0.00 0.00 2.52
2552 2701 1.134560 ACGGCCGTCTCTACATTCTTC 59.865 52.381 28.70 0.00 0.00 2.87
2553 2702 1.405821 CGGCCGTCTCTACATTCTTCT 59.594 52.381 19.50 0.00 0.00 2.85
2554 2703 2.159226 CGGCCGTCTCTACATTCTTCTT 60.159 50.000 19.50 0.00 0.00 2.52
2555 2704 3.449632 GGCCGTCTCTACATTCTTCTTC 58.550 50.000 0.00 0.00 0.00 2.87
2556 2705 3.131400 GGCCGTCTCTACATTCTTCTTCT 59.869 47.826 0.00 0.00 0.00 2.85
2557 2706 4.382147 GGCCGTCTCTACATTCTTCTTCTT 60.382 45.833 0.00 0.00 0.00 2.52
2558 2707 5.172205 GCCGTCTCTACATTCTTCTTCTTT 58.828 41.667 0.00 0.00 0.00 2.52
2559 2708 5.639931 GCCGTCTCTACATTCTTCTTCTTTT 59.360 40.000 0.00 0.00 0.00 2.27
2560 2709 6.183360 GCCGTCTCTACATTCTTCTTCTTTTC 60.183 42.308 0.00 0.00 0.00 2.29
2561 2710 7.093992 CCGTCTCTACATTCTTCTTCTTTTCT 58.906 38.462 0.00 0.00 0.00 2.52
2562 2711 7.600752 CCGTCTCTACATTCTTCTTCTTTTCTT 59.399 37.037 0.00 0.00 0.00 2.52
2563 2712 8.983724 CGTCTCTACATTCTTCTTCTTTTCTTT 58.016 33.333 0.00 0.00 0.00 2.52
2565 2714 9.495572 TCTCTACATTCTTCTTCTTTTCTTTCC 57.504 33.333 0.00 0.00 0.00 3.13
2566 2715 8.311650 TCTACATTCTTCTTCTTTTCTTTCCG 57.688 34.615 0.00 0.00 0.00 4.30
2567 2716 6.319141 ACATTCTTCTTCTTTTCTTTCCGG 57.681 37.500 0.00 0.00 0.00 5.14
2568 2717 4.830826 TTCTTCTTCTTTTCTTTCCGGC 57.169 40.909 0.00 0.00 0.00 6.13
2569 2718 3.146847 TCTTCTTCTTTTCTTTCCGGCC 58.853 45.455 0.00 0.00 0.00 6.13
2570 2719 2.649531 TCTTCTTTTCTTTCCGGCCA 57.350 45.000 2.24 0.00 0.00 5.36
2571 2720 2.504367 TCTTCTTTTCTTTCCGGCCAG 58.496 47.619 2.24 0.00 0.00 4.85
2572 2721 1.541588 CTTCTTTTCTTTCCGGCCAGG 59.458 52.381 2.24 5.27 42.97 4.45
2573 2722 0.251165 TCTTTTCTTTCCGGCCAGGG 60.251 55.000 2.24 0.00 41.52 4.45
2574 2723 1.877576 CTTTTCTTTCCGGCCAGGGC 61.878 60.000 2.24 1.81 41.52 5.19
2575 2724 2.366153 TTTTCTTTCCGGCCAGGGCT 62.366 55.000 12.03 0.00 41.52 5.19
2576 2725 2.366153 TTTCTTTCCGGCCAGGGCTT 62.366 55.000 12.03 0.00 41.52 4.35
2577 2726 3.064324 CTTTCCGGCCAGGGCTTG 61.064 66.667 12.03 2.04 41.52 4.01
2624 2806 6.183360 GCCGTCTCTACATTCTTCTTCTTTTC 60.183 42.308 0.00 0.00 0.00 2.29
2625 2807 7.093992 CCGTCTCTACATTCTTCTTCTTTTCT 58.906 38.462 0.00 0.00 0.00 2.52
2626 2808 7.600752 CCGTCTCTACATTCTTCTTCTTTTCTT 59.399 37.037 0.00 0.00 0.00 2.52
2627 2809 8.983724 CGTCTCTACATTCTTCTTCTTTTCTTT 58.016 33.333 0.00 0.00 0.00 2.52
2629 2811 9.495572 TCTCTACATTCTTCTTCTTTTCTTTCC 57.504 33.333 0.00 0.00 0.00 3.13
2630 2812 8.311650 TCTACATTCTTCTTCTTTTCTTTCCG 57.688 34.615 0.00 0.00 0.00 4.30
2631 2813 6.319141 ACATTCTTCTTCTTTTCTTTCCGG 57.681 37.500 0.00 0.00 0.00 5.14
2632 2814 4.830826 TTCTTCTTCTTTTCTTTCCGGC 57.169 40.909 0.00 0.00 0.00 6.13
2633 2815 3.146847 TCTTCTTCTTTTCTTTCCGGCC 58.853 45.455 0.00 0.00 0.00 6.13
2634 2816 2.649531 TCTTCTTTTCTTTCCGGCCA 57.350 45.000 2.24 0.00 0.00 5.36
2635 2817 2.504367 TCTTCTTTTCTTTCCGGCCAG 58.496 47.619 2.24 0.00 0.00 4.85
2636 2818 1.541588 CTTCTTTTCTTTCCGGCCAGG 59.458 52.381 2.24 5.27 42.97 4.45
2637 2819 0.251165 TCTTTTCTTTCCGGCCAGGG 60.251 55.000 2.24 0.00 41.52 4.45
2638 2820 1.877576 CTTTTCTTTCCGGCCAGGGC 61.878 60.000 2.24 1.81 41.52 5.19
2639 2821 2.366153 TTTTCTTTCCGGCCAGGGCT 62.366 55.000 12.03 0.00 41.52 5.19
2640 2822 2.366153 TTTCTTTCCGGCCAGGGCTT 62.366 55.000 12.03 0.00 41.52 4.35
2641 2823 3.064324 CTTTCCGGCCAGGGCTTG 61.064 66.667 12.03 2.04 41.52 4.01
2648 2830 3.387947 GCCAGGGCTTGCAGCATT 61.388 61.111 2.30 0.00 44.75 3.56
2649 2831 2.951101 GCCAGGGCTTGCAGCATTT 61.951 57.895 2.30 0.00 44.75 2.32
2650 2832 1.217244 CCAGGGCTTGCAGCATTTC 59.783 57.895 0.00 0.00 44.75 2.17
2651 2833 1.255667 CCAGGGCTTGCAGCATTTCT 61.256 55.000 0.00 0.00 44.75 2.52
2652 2834 0.172803 CAGGGCTTGCAGCATTTCTC 59.827 55.000 0.00 0.00 44.75 2.87
2653 2835 0.039326 AGGGCTTGCAGCATTTCTCT 59.961 50.000 0.00 0.00 44.75 3.10
2654 2836 1.283029 AGGGCTTGCAGCATTTCTCTA 59.717 47.619 0.00 0.00 44.75 2.43
2655 2837 1.674962 GGGCTTGCAGCATTTCTCTAG 59.325 52.381 0.00 0.00 44.75 2.43
2656 2838 1.674962 GGCTTGCAGCATTTCTCTAGG 59.325 52.381 0.00 0.00 44.75 3.02
2657 2839 2.636830 GCTTGCAGCATTTCTCTAGGA 58.363 47.619 0.00 0.00 41.89 2.94
2658 2840 2.354199 GCTTGCAGCATTTCTCTAGGAC 59.646 50.000 0.00 0.00 41.89 3.85
2659 2841 2.299993 TGCAGCATTTCTCTAGGACG 57.700 50.000 0.00 0.00 0.00 4.79
2660 2842 1.824852 TGCAGCATTTCTCTAGGACGA 59.175 47.619 0.00 0.00 0.00 4.20
2661 2843 2.197577 GCAGCATTTCTCTAGGACGAC 58.802 52.381 0.00 0.00 0.00 4.34
2662 2844 2.455032 CAGCATTTCTCTAGGACGACG 58.545 52.381 0.00 0.00 0.00 5.12
2663 2845 1.405821 AGCATTTCTCTAGGACGACGG 59.594 52.381 0.00 0.00 0.00 4.79
2664 2846 1.841450 CATTTCTCTAGGACGACGGC 58.159 55.000 0.00 0.00 0.00 5.68
2665 2847 0.745468 ATTTCTCTAGGACGACGGCC 59.255 55.000 13.34 13.34 0.00 6.13
2666 2848 1.651240 TTTCTCTAGGACGACGGCCG 61.651 60.000 26.86 26.86 45.44 6.13
2675 2857 3.108343 CGACGGCCGTCTCTACAT 58.892 61.111 44.83 18.45 42.54 2.29
2676 2858 1.432251 CGACGGCCGTCTCTACATT 59.568 57.895 44.83 17.66 42.54 2.71
2677 2859 0.591741 CGACGGCCGTCTCTACATTC 60.592 60.000 44.83 24.09 42.54 2.67
2678 2860 0.739561 GACGGCCGTCTCTACATTCT 59.260 55.000 43.32 13.87 41.57 2.40
2679 2861 1.134560 GACGGCCGTCTCTACATTCTT 59.865 52.381 43.32 13.65 41.57 2.52
2680 2862 1.134560 ACGGCCGTCTCTACATTCTTC 59.865 52.381 28.70 0.00 0.00 2.87
2681 2863 1.405821 CGGCCGTCTCTACATTCTTCT 59.594 52.381 19.50 0.00 0.00 2.85
2682 2864 2.159226 CGGCCGTCTCTACATTCTTCTT 60.159 50.000 19.50 0.00 0.00 2.52
2683 2865 3.449632 GGCCGTCTCTACATTCTTCTTC 58.550 50.000 0.00 0.00 0.00 2.87
2684 2866 3.131400 GGCCGTCTCTACATTCTTCTTCT 59.869 47.826 0.00 0.00 0.00 2.85
2685 2867 4.382147 GGCCGTCTCTACATTCTTCTTCTT 60.382 45.833 0.00 0.00 0.00 2.52
2686 2868 5.172205 GCCGTCTCTACATTCTTCTTCTTT 58.828 41.667 0.00 0.00 0.00 2.52
2687 2869 5.639931 GCCGTCTCTACATTCTTCTTCTTTT 59.360 40.000 0.00 0.00 0.00 2.27
2688 2870 6.183360 GCCGTCTCTACATTCTTCTTCTTTTC 60.183 42.308 0.00 0.00 0.00 2.29
2689 2871 7.093992 CCGTCTCTACATTCTTCTTCTTTTCT 58.906 38.462 0.00 0.00 0.00 2.52
2690 2872 7.600752 CCGTCTCTACATTCTTCTTCTTTTCTT 59.399 37.037 0.00 0.00 0.00 2.52
2691 2873 8.983724 CGTCTCTACATTCTTCTTCTTTTCTTT 58.016 33.333 0.00 0.00 0.00 2.52
2693 2875 9.495572 TCTCTACATTCTTCTTCTTTTCTTTCC 57.504 33.333 0.00 0.00 0.00 3.13
2694 2876 8.311650 TCTACATTCTTCTTCTTTTCTTTCCG 57.688 34.615 0.00 0.00 0.00 4.30
2695 2877 6.319141 ACATTCTTCTTCTTTTCTTTCCGG 57.681 37.500 0.00 0.00 0.00 5.14
2696 2878 4.830826 TTCTTCTTCTTTTCTTTCCGGC 57.169 40.909 0.00 0.00 0.00 6.13
2697 2879 3.146847 TCTTCTTCTTTTCTTTCCGGCC 58.853 45.455 0.00 0.00 0.00 6.13
2698 2880 2.649531 TCTTCTTTTCTTTCCGGCCA 57.350 45.000 2.24 0.00 0.00 5.36
2699 2881 2.504367 TCTTCTTTTCTTTCCGGCCAG 58.496 47.619 2.24 0.00 0.00 4.85
2700 2882 1.541588 CTTCTTTTCTTTCCGGCCAGG 59.458 52.381 2.24 5.27 42.97 4.45
2701 2883 0.251165 TCTTTTCTTTCCGGCCAGGG 60.251 55.000 2.24 0.00 41.52 4.45
2702 2884 1.877576 CTTTTCTTTCCGGCCAGGGC 61.878 60.000 2.24 1.81 41.52 5.19
2703 2885 2.366153 TTTTCTTTCCGGCCAGGGCT 62.366 55.000 12.03 0.00 41.52 5.19
2704 2886 2.366153 TTTCTTTCCGGCCAGGGCTT 62.366 55.000 12.03 0.00 41.52 4.35
2705 2887 3.064324 CTTTCCGGCCAGGGCTTG 61.064 66.667 12.03 2.04 41.52 4.01
2712 2894 3.387947 GCCAGGGCTTGCAGCATT 61.388 61.111 2.30 0.00 44.75 3.56
2713 2895 2.951101 GCCAGGGCTTGCAGCATTT 61.951 57.895 2.30 0.00 44.75 2.32
2714 2896 1.217244 CCAGGGCTTGCAGCATTTC 59.783 57.895 0.00 0.00 44.75 2.17
2715 2897 1.255667 CCAGGGCTTGCAGCATTTCT 61.256 55.000 0.00 0.00 44.75 2.52
2716 2898 0.172803 CAGGGCTTGCAGCATTTCTC 59.827 55.000 0.00 0.00 44.75 2.87
2717 2899 0.039326 AGGGCTTGCAGCATTTCTCT 59.961 50.000 0.00 0.00 44.75 3.10
2718 2900 1.283029 AGGGCTTGCAGCATTTCTCTA 59.717 47.619 0.00 0.00 44.75 2.43
2719 2901 1.674962 GGGCTTGCAGCATTTCTCTAG 59.325 52.381 0.00 0.00 44.75 2.43
2720 2902 1.674962 GGCTTGCAGCATTTCTCTAGG 59.325 52.381 0.00 0.00 44.75 3.02
2721 2903 2.636830 GCTTGCAGCATTTCTCTAGGA 58.363 47.619 0.00 0.00 41.89 2.94
2722 2904 2.354199 GCTTGCAGCATTTCTCTAGGAC 59.646 50.000 0.00 0.00 41.89 3.85
2723 2905 2.299993 TGCAGCATTTCTCTAGGACG 57.700 50.000 0.00 0.00 0.00 4.79
2724 2906 1.824852 TGCAGCATTTCTCTAGGACGA 59.175 47.619 0.00 0.00 0.00 4.20
2725 2907 2.197577 GCAGCATTTCTCTAGGACGAC 58.802 52.381 0.00 0.00 0.00 4.34
2726 2908 2.455032 CAGCATTTCTCTAGGACGACG 58.545 52.381 0.00 0.00 0.00 5.12
2727 2909 1.405821 AGCATTTCTCTAGGACGACGG 59.594 52.381 0.00 0.00 0.00 4.79
2728 2910 1.841450 CATTTCTCTAGGACGACGGC 58.159 55.000 0.00 0.00 0.00 5.68
2729 2911 0.745468 ATTTCTCTAGGACGACGGCC 59.255 55.000 13.34 13.34 0.00 6.13
2730 2912 1.651240 TTTCTCTAGGACGACGGCCG 61.651 60.000 26.86 26.86 45.44 6.13
2739 2921 3.108343 CGACGGCCGTCTCTACAT 58.892 61.111 44.83 18.45 42.54 2.29
2740 2922 1.432251 CGACGGCCGTCTCTACATT 59.568 57.895 44.83 17.66 42.54 2.71
2741 2923 0.591741 CGACGGCCGTCTCTACATTC 60.592 60.000 44.83 24.09 42.54 2.67
2742 2924 0.739561 GACGGCCGTCTCTACATTCT 59.260 55.000 43.32 13.87 41.57 2.40
2743 2925 1.134560 GACGGCCGTCTCTACATTCTT 59.865 52.381 43.32 13.65 41.57 2.52
2744 2926 1.134560 ACGGCCGTCTCTACATTCTTC 59.865 52.381 28.70 0.00 0.00 2.87
2745 2927 1.405821 CGGCCGTCTCTACATTCTTCT 59.594 52.381 19.50 0.00 0.00 2.85
2746 2928 2.159226 CGGCCGTCTCTACATTCTTCTT 60.159 50.000 19.50 0.00 0.00 2.52
2747 2929 3.449632 GGCCGTCTCTACATTCTTCTTC 58.550 50.000 0.00 0.00 0.00 2.87
2748 2930 3.131400 GGCCGTCTCTACATTCTTCTTCT 59.869 47.826 0.00 0.00 0.00 2.85
2749 2931 4.382147 GGCCGTCTCTACATTCTTCTTCTT 60.382 45.833 0.00 0.00 0.00 2.52
2750 2932 5.172205 GCCGTCTCTACATTCTTCTTCTTT 58.828 41.667 0.00 0.00 0.00 2.52
2751 2933 5.639931 GCCGTCTCTACATTCTTCTTCTTTT 59.360 40.000 0.00 0.00 0.00 2.27
2752 2934 6.183360 GCCGTCTCTACATTCTTCTTCTTTTC 60.183 42.308 0.00 0.00 0.00 2.29
2753 2935 7.093992 CCGTCTCTACATTCTTCTTCTTTTCT 58.906 38.462 0.00 0.00 0.00 2.52
2754 2936 7.600752 CCGTCTCTACATTCTTCTTCTTTTCTT 59.399 37.037 0.00 0.00 0.00 2.52
2755 2937 8.983724 CGTCTCTACATTCTTCTTCTTTTCTTT 58.016 33.333 0.00 0.00 0.00 2.52
2759 2941 9.277783 TCTACATTCTTCTTCTTTTCTTTCTGG 57.722 33.333 0.00 0.00 0.00 3.86
2760 2942 6.743110 ACATTCTTCTTCTTTTCTTTCTGGC 58.257 36.000 0.00 0.00 0.00 4.85
2761 2943 5.774498 TTCTTCTTCTTTTCTTTCTGGCC 57.226 39.130 0.00 0.00 0.00 5.36
2762 2944 4.792068 TCTTCTTCTTTTCTTTCTGGCCA 58.208 39.130 4.71 4.71 0.00 5.36
2763 2945 4.823989 TCTTCTTCTTTTCTTTCTGGCCAG 59.176 41.667 27.87 27.87 0.00 4.85
2764 2946 3.490348 TCTTCTTTTCTTTCTGGCCAGG 58.510 45.455 32.23 16.79 0.00 4.45
2765 2947 2.292828 TCTTTTCTTTCTGGCCAGGG 57.707 50.000 32.23 21.22 0.00 4.45
2766 2948 0.605083 CTTTTCTTTCTGGCCAGGGC 59.395 55.000 32.23 5.91 41.06 5.19
2767 2949 0.188342 TTTTCTTTCTGGCCAGGGCT 59.812 50.000 32.23 0.00 41.60 5.19
2768 2950 0.188342 TTTCTTTCTGGCCAGGGCTT 59.812 50.000 32.23 0.00 41.60 4.35
2769 2951 0.540365 TTCTTTCTGGCCAGGGCTTG 60.540 55.000 32.23 17.28 41.60 4.01
2770 2952 2.601367 TTTCTGGCCAGGGCTTGC 60.601 61.111 32.23 0.00 41.60 4.01
2771 2953 3.449494 TTTCTGGCCAGGGCTTGCA 62.449 57.895 32.23 8.58 41.60 4.08
2772 2954 3.873679 TTCTGGCCAGGGCTTGCAG 62.874 63.158 32.23 11.23 41.60 4.41
2776 2958 3.387947 GCCAGGGCTTGCAGCATT 61.388 61.111 2.30 0.00 44.75 3.56
2777 2959 2.951101 GCCAGGGCTTGCAGCATTT 61.951 57.895 2.30 0.00 44.75 2.32
2778 2960 1.217244 CCAGGGCTTGCAGCATTTC 59.783 57.895 0.00 0.00 44.75 2.17
2779 2961 1.255667 CCAGGGCTTGCAGCATTTCT 61.256 55.000 0.00 0.00 44.75 2.52
2780 2962 0.172803 CAGGGCTTGCAGCATTTCTC 59.827 55.000 0.00 0.00 44.75 2.87
2781 2963 0.039326 AGGGCTTGCAGCATTTCTCT 59.961 50.000 0.00 0.00 44.75 3.10
2782 2964 1.283029 AGGGCTTGCAGCATTTCTCTA 59.717 47.619 0.00 0.00 44.75 2.43
2783 2965 1.674962 GGGCTTGCAGCATTTCTCTAG 59.325 52.381 0.00 0.00 44.75 2.43
2784 2966 1.674962 GGCTTGCAGCATTTCTCTAGG 59.325 52.381 0.00 0.00 44.75 3.02
2785 2967 2.636830 GCTTGCAGCATTTCTCTAGGA 58.363 47.619 0.00 0.00 41.89 2.94
2786 2968 2.354199 GCTTGCAGCATTTCTCTAGGAC 59.646 50.000 0.00 0.00 41.89 3.85
2787 2969 2.299993 TGCAGCATTTCTCTAGGACG 57.700 50.000 0.00 0.00 0.00 4.79
2788 2970 1.824852 TGCAGCATTTCTCTAGGACGA 59.175 47.619 0.00 0.00 0.00 4.20
2789 2971 2.197577 GCAGCATTTCTCTAGGACGAC 58.802 52.381 0.00 0.00 0.00 4.34
2790 2972 2.455032 CAGCATTTCTCTAGGACGACG 58.545 52.381 0.00 0.00 0.00 5.12
2791 2973 1.405821 AGCATTTCTCTAGGACGACGG 59.594 52.381 0.00 0.00 0.00 4.79
2792 2974 1.841450 CATTTCTCTAGGACGACGGC 58.159 55.000 0.00 0.00 0.00 5.68
2793 2975 0.745468 ATTTCTCTAGGACGACGGCC 59.255 55.000 13.34 13.34 0.00 6.13
2794 2976 1.651240 TTTCTCTAGGACGACGGCCG 61.651 60.000 26.86 26.86 45.44 6.13
2803 2985 3.108343 CGACGGCCGTCTCTACAT 58.892 61.111 44.83 18.45 42.54 2.29
2804 2986 1.432251 CGACGGCCGTCTCTACATT 59.568 57.895 44.83 17.66 42.54 2.71
2805 2987 0.591741 CGACGGCCGTCTCTACATTC 60.592 60.000 44.83 24.09 42.54 2.67
2806 2988 0.739561 GACGGCCGTCTCTACATTCT 59.260 55.000 43.32 13.87 41.57 2.40
2807 2989 1.134560 GACGGCCGTCTCTACATTCTT 59.865 52.381 43.32 13.65 41.57 2.52
2808 2990 1.134560 ACGGCCGTCTCTACATTCTTC 59.865 52.381 28.70 0.00 0.00 2.87
2809 2991 1.405821 CGGCCGTCTCTACATTCTTCT 59.594 52.381 19.50 0.00 0.00 2.85
2810 2992 2.159226 CGGCCGTCTCTACATTCTTCTT 60.159 50.000 19.50 0.00 0.00 2.52
2811 2993 3.449632 GGCCGTCTCTACATTCTTCTTC 58.550 50.000 0.00 0.00 0.00 2.87
2812 2994 3.131400 GGCCGTCTCTACATTCTTCTTCT 59.869 47.826 0.00 0.00 0.00 2.85
2813 2995 4.382147 GGCCGTCTCTACATTCTTCTTCTT 60.382 45.833 0.00 0.00 0.00 2.52
2814 2996 5.172205 GCCGTCTCTACATTCTTCTTCTTT 58.828 41.667 0.00 0.00 0.00 2.52
2815 2997 5.639931 GCCGTCTCTACATTCTTCTTCTTTT 59.360 40.000 0.00 0.00 0.00 2.27
2816 2998 6.183360 GCCGTCTCTACATTCTTCTTCTTTTC 60.183 42.308 0.00 0.00 0.00 2.29
2817 2999 7.093992 CCGTCTCTACATTCTTCTTCTTTTCT 58.906 38.462 0.00 0.00 0.00 2.52
2818 3000 7.600752 CCGTCTCTACATTCTTCTTCTTTTCTT 59.399 37.037 0.00 0.00 0.00 2.52
2819 3001 8.983724 CGTCTCTACATTCTTCTTCTTTTCTTT 58.016 33.333 0.00 0.00 0.00 2.52
2821 3003 9.495572 TCTCTACATTCTTCTTCTTTTCTTTCC 57.504 33.333 0.00 0.00 0.00 3.13
2822 3004 8.311650 TCTACATTCTTCTTCTTTTCTTTCCG 57.688 34.615 0.00 0.00 0.00 4.30
2823 3005 6.319141 ACATTCTTCTTCTTTTCTTTCCGG 57.681 37.500 0.00 0.00 0.00 5.14
2824 3006 4.830826 TTCTTCTTCTTTTCTTTCCGGC 57.169 40.909 0.00 0.00 0.00 6.13
2825 3007 3.146847 TCTTCTTCTTTTCTTTCCGGCC 58.853 45.455 0.00 0.00 0.00 6.13
2826 3008 2.649531 TCTTCTTTTCTTTCCGGCCA 57.350 45.000 2.24 0.00 0.00 5.36
2827 3009 2.504367 TCTTCTTTTCTTTCCGGCCAG 58.496 47.619 2.24 0.00 0.00 4.85
2828 3010 1.541588 CTTCTTTTCTTTCCGGCCAGG 59.458 52.381 2.24 5.27 42.97 4.45
2829 3011 0.251165 TCTTTTCTTTCCGGCCAGGG 60.251 55.000 2.24 0.00 41.52 4.45
2830 3012 1.877576 CTTTTCTTTCCGGCCAGGGC 61.878 60.000 2.24 1.81 41.52 5.19
2831 3013 2.366153 TTTTCTTTCCGGCCAGGGCT 62.366 55.000 12.03 0.00 41.52 5.19
2832 3014 2.366153 TTTCTTTCCGGCCAGGGCTT 62.366 55.000 12.03 0.00 41.52 4.35
2833 3015 3.064324 CTTTCCGGCCAGGGCTTG 61.064 66.667 12.03 2.04 41.52 4.01
2840 3022 3.387947 GCCAGGGCTTGCAGCATT 61.388 61.111 2.30 0.00 44.75 3.56
2841 3023 2.951101 GCCAGGGCTTGCAGCATTT 61.951 57.895 2.30 0.00 44.75 2.32
2842 3024 1.217244 CCAGGGCTTGCAGCATTTC 59.783 57.895 0.00 0.00 44.75 2.17
2843 3025 1.255667 CCAGGGCTTGCAGCATTTCT 61.256 55.000 0.00 0.00 44.75 2.52
2844 3026 0.172803 CAGGGCTTGCAGCATTTCTC 59.827 55.000 0.00 0.00 44.75 2.87
2845 3027 0.039326 AGGGCTTGCAGCATTTCTCT 59.961 50.000 0.00 0.00 44.75 3.10
2846 3028 1.283029 AGGGCTTGCAGCATTTCTCTA 59.717 47.619 0.00 0.00 44.75 2.43
2847 3029 1.674962 GGGCTTGCAGCATTTCTCTAG 59.325 52.381 0.00 0.00 44.75 2.43
2848 3030 1.674962 GGCTTGCAGCATTTCTCTAGG 59.325 52.381 0.00 0.00 44.75 3.02
2849 3031 2.636830 GCTTGCAGCATTTCTCTAGGA 58.363 47.619 0.00 0.00 41.89 2.94
2850 3032 2.354199 GCTTGCAGCATTTCTCTAGGAC 59.646 50.000 0.00 0.00 41.89 3.85
2851 3033 2.299993 TGCAGCATTTCTCTAGGACG 57.700 50.000 0.00 0.00 0.00 4.79
2852 3034 1.824852 TGCAGCATTTCTCTAGGACGA 59.175 47.619 0.00 0.00 0.00 4.20
2853 3035 2.197577 GCAGCATTTCTCTAGGACGAC 58.802 52.381 0.00 0.00 0.00 4.34
2854 3036 2.455032 CAGCATTTCTCTAGGACGACG 58.545 52.381 0.00 0.00 0.00 5.12
2855 3037 1.405821 AGCATTTCTCTAGGACGACGG 59.594 52.381 0.00 0.00 0.00 4.79
2856 3038 1.841450 CATTTCTCTAGGACGACGGC 58.159 55.000 0.00 0.00 0.00 5.68
2857 3039 0.745468 ATTTCTCTAGGACGACGGCC 59.255 55.000 13.34 13.34 0.00 6.13
2858 3040 1.651240 TTTCTCTAGGACGACGGCCG 61.651 60.000 26.86 26.86 45.44 6.13
2867 3049 3.108343 CGACGGCCGTCTCTACAT 58.892 61.111 44.83 18.45 42.54 2.29
2868 3050 1.432251 CGACGGCCGTCTCTACATT 59.568 57.895 44.83 17.66 42.54 2.71
2869 3051 0.591741 CGACGGCCGTCTCTACATTC 60.592 60.000 44.83 24.09 42.54 2.67
2870 3052 0.739561 GACGGCCGTCTCTACATTCT 59.260 55.000 43.32 13.87 41.57 2.40
2871 3053 1.134560 GACGGCCGTCTCTACATTCTT 59.865 52.381 43.32 13.65 41.57 2.52
2872 3054 1.134560 ACGGCCGTCTCTACATTCTTC 59.865 52.381 28.70 0.00 0.00 2.87
2873 3055 1.405821 CGGCCGTCTCTACATTCTTCT 59.594 52.381 19.50 0.00 0.00 2.85
2874 3056 2.159226 CGGCCGTCTCTACATTCTTCTT 60.159 50.000 19.50 0.00 0.00 2.52
2875 3057 3.449632 GGCCGTCTCTACATTCTTCTTC 58.550 50.000 0.00 0.00 0.00 2.87
2876 3058 3.131400 GGCCGTCTCTACATTCTTCTTCT 59.869 47.826 0.00 0.00 0.00 2.85
2877 3059 4.382147 GGCCGTCTCTACATTCTTCTTCTT 60.382 45.833 0.00 0.00 0.00 2.52
2878 3060 5.172205 GCCGTCTCTACATTCTTCTTCTTT 58.828 41.667 0.00 0.00 0.00 2.52
2879 3061 5.639931 GCCGTCTCTACATTCTTCTTCTTTT 59.360 40.000 0.00 0.00 0.00 2.27
2880 3062 6.183360 GCCGTCTCTACATTCTTCTTCTTTTC 60.183 42.308 0.00 0.00 0.00 2.29
2881 3063 7.093992 CCGTCTCTACATTCTTCTTCTTTTCT 58.906 38.462 0.00 0.00 0.00 2.52
2882 3064 7.600752 CCGTCTCTACATTCTTCTTCTTTTCTT 59.399 37.037 0.00 0.00 0.00 2.52
2883 3065 8.983724 CGTCTCTACATTCTTCTTCTTTTCTTT 58.016 33.333 0.00 0.00 0.00 2.52
2885 3067 9.495572 TCTCTACATTCTTCTTCTTTTCTTTCC 57.504 33.333 0.00 0.00 0.00 3.13
2886 3068 8.311650 TCTACATTCTTCTTCTTTTCTTTCCG 57.688 34.615 0.00 0.00 0.00 4.30
2887 3069 6.319141 ACATTCTTCTTCTTTTCTTTCCGG 57.681 37.500 0.00 0.00 0.00 5.14
2888 3070 4.830826 TTCTTCTTCTTTTCTTTCCGGC 57.169 40.909 0.00 0.00 0.00 6.13
2889 3071 3.146847 TCTTCTTCTTTTCTTTCCGGCC 58.853 45.455 0.00 0.00 0.00 6.13
2890 3072 2.649531 TCTTCTTTTCTTTCCGGCCA 57.350 45.000 2.24 0.00 0.00 5.36
2891 3073 2.504367 TCTTCTTTTCTTTCCGGCCAG 58.496 47.619 2.24 0.00 0.00 4.85
2892 3074 1.541588 CTTCTTTTCTTTCCGGCCAGG 59.458 52.381 2.24 5.27 42.97 4.45
2893 3075 0.251165 TCTTTTCTTTCCGGCCAGGG 60.251 55.000 2.24 0.00 41.52 4.45
2894 3076 1.877576 CTTTTCTTTCCGGCCAGGGC 61.878 60.000 2.24 1.81 41.52 5.19
2895 3077 2.366153 TTTTCTTTCCGGCCAGGGCT 62.366 55.000 12.03 0.00 41.52 5.19
2896 3078 2.366153 TTTCTTTCCGGCCAGGGCTT 62.366 55.000 12.03 0.00 41.52 4.35
2897 3079 3.064324 CTTTCCGGCCAGGGCTTG 61.064 66.667 12.03 2.04 41.52 4.01
2904 3086 3.387947 GCCAGGGCTTGCAGCATT 61.388 61.111 2.30 0.00 44.75 3.56
2905 3087 2.951101 GCCAGGGCTTGCAGCATTT 61.951 57.895 2.30 0.00 44.75 2.32
2906 3088 1.217244 CCAGGGCTTGCAGCATTTC 59.783 57.895 0.00 0.00 44.75 2.17
2907 3089 1.255667 CCAGGGCTTGCAGCATTTCT 61.256 55.000 0.00 0.00 44.75 2.52
2908 3090 0.172803 CAGGGCTTGCAGCATTTCTC 59.827 55.000 0.00 0.00 44.75 2.87
2909 3091 0.039326 AGGGCTTGCAGCATTTCTCT 59.961 50.000 0.00 0.00 44.75 3.10
2910 3092 1.283029 AGGGCTTGCAGCATTTCTCTA 59.717 47.619 0.00 0.00 44.75 2.43
2911 3093 1.674962 GGGCTTGCAGCATTTCTCTAG 59.325 52.381 0.00 0.00 44.75 2.43
2912 3094 1.674962 GGCTTGCAGCATTTCTCTAGG 59.325 52.381 0.00 0.00 44.75 3.02
2913 3095 2.636830 GCTTGCAGCATTTCTCTAGGA 58.363 47.619 0.00 0.00 41.89 2.94
2914 3096 2.354199 GCTTGCAGCATTTCTCTAGGAC 59.646 50.000 0.00 0.00 41.89 3.85
2915 3097 2.299993 TGCAGCATTTCTCTAGGACG 57.700 50.000 0.00 0.00 0.00 4.79
2916 3098 1.824852 TGCAGCATTTCTCTAGGACGA 59.175 47.619 0.00 0.00 0.00 4.20
2917 3099 2.197577 GCAGCATTTCTCTAGGACGAC 58.802 52.381 0.00 0.00 0.00 4.34
2918 3100 2.455032 CAGCATTTCTCTAGGACGACG 58.545 52.381 0.00 0.00 0.00 5.12
2919 3101 1.405821 AGCATTTCTCTAGGACGACGG 59.594 52.381 0.00 0.00 0.00 4.79
2920 3102 1.841450 CATTTCTCTAGGACGACGGC 58.159 55.000 0.00 0.00 0.00 5.68
2921 3103 0.745468 ATTTCTCTAGGACGACGGCC 59.255 55.000 13.34 13.34 0.00 6.13
2922 3104 1.651240 TTTCTCTAGGACGACGGCCG 61.651 60.000 26.86 26.86 45.44 6.13
2931 3113 2.403987 CGACGGCCGTCTCTACAG 59.596 66.667 44.83 29.74 42.54 2.74
2932 3114 2.396955 CGACGGCCGTCTCTACAGT 61.397 63.158 44.83 17.66 42.54 3.55
2933 3115 1.428620 GACGGCCGTCTCTACAGTC 59.571 63.158 43.32 20.46 41.57 3.51
2934 3116 1.002379 ACGGCCGTCTCTACAGTCT 60.002 57.895 28.70 0.00 0.00 3.24
2935 3117 0.608582 ACGGCCGTCTCTACAGTCTT 60.609 55.000 28.70 0.00 0.00 3.01
2936 3118 0.099082 CGGCCGTCTCTACAGTCTTC 59.901 60.000 19.50 0.00 0.00 2.87
2937 3119 1.465794 GGCCGTCTCTACAGTCTTCT 58.534 55.000 0.00 0.00 0.00 2.85
2938 3120 1.819903 GGCCGTCTCTACAGTCTTCTT 59.180 52.381 0.00 0.00 0.00 2.52
2939 3121 2.159352 GGCCGTCTCTACAGTCTTCTTC 60.159 54.545 0.00 0.00 0.00 2.87
2940 3122 2.750712 GCCGTCTCTACAGTCTTCTTCT 59.249 50.000 0.00 0.00 0.00 2.85
2941 3123 3.191791 GCCGTCTCTACAGTCTTCTTCTT 59.808 47.826 0.00 0.00 0.00 2.52
2942 3124 4.321378 GCCGTCTCTACAGTCTTCTTCTTT 60.321 45.833 0.00 0.00 0.00 2.52
2943 3125 5.395642 CCGTCTCTACAGTCTTCTTCTTTC 58.604 45.833 0.00 0.00 0.00 2.62
3006 3188 5.359194 TCGGAAGAAAATAGCAAGAGGAT 57.641 39.130 0.00 0.00 37.03 3.24
3007 3189 5.745227 TCGGAAGAAAATAGCAAGAGGATT 58.255 37.500 0.00 0.00 37.03 3.01
3008 3190 5.817816 TCGGAAGAAAATAGCAAGAGGATTC 59.182 40.000 0.00 0.00 37.03 2.52
3009 3191 5.819901 CGGAAGAAAATAGCAAGAGGATTCT 59.180 40.000 0.00 0.00 34.29 2.40
3010 3192 6.986817 CGGAAGAAAATAGCAAGAGGATTCTA 59.013 38.462 0.00 0.00 31.96 2.10
3011 3193 7.042389 CGGAAGAAAATAGCAAGAGGATTCTAC 60.042 40.741 0.00 0.00 31.96 2.59
3012 3194 7.770897 GGAAGAAAATAGCAAGAGGATTCTACA 59.229 37.037 0.00 0.00 31.96 2.74
3013 3195 9.167311 GAAGAAAATAGCAAGAGGATTCTACAA 57.833 33.333 0.00 0.00 31.96 2.41
3014 3196 8.499403 AGAAAATAGCAAGAGGATTCTACAAC 57.501 34.615 0.00 0.00 31.96 3.32
3015 3197 8.325046 AGAAAATAGCAAGAGGATTCTACAACT 58.675 33.333 0.00 0.00 31.96 3.16
3019 3201 8.998277 ATAGCAAGAGGATTCTACAACTACTA 57.002 34.615 0.00 0.00 31.96 1.82
3021 3203 6.893005 AGCAAGAGGATTCTACAACTACTACT 59.107 38.462 0.00 0.00 31.96 2.57
3022 3204 6.975772 GCAAGAGGATTCTACAACTACTACTG 59.024 42.308 0.00 0.00 31.96 2.74
3023 3205 7.484975 CAAGAGGATTCTACAACTACTACTGG 58.515 42.308 0.00 0.00 31.96 4.00
3024 3206 5.595133 AGAGGATTCTACAACTACTACTGGC 59.405 44.000 0.00 0.00 0.00 4.85
3025 3207 5.269991 AGGATTCTACAACTACTACTGGCA 58.730 41.667 0.00 0.00 0.00 4.92
3042 3243 1.199624 GCAACAGGTCGCTGTTTTTG 58.800 50.000 5.78 0.00 44.18 2.44
3050 3251 0.881118 TCGCTGTTTTTGGCTCATCC 59.119 50.000 0.00 0.00 0.00 3.51
3066 3267 4.453819 GCTCATCCTCATGTGTAATTAGCC 59.546 45.833 0.00 0.00 0.00 3.93
3067 3268 5.614308 CTCATCCTCATGTGTAATTAGCCA 58.386 41.667 0.00 0.00 0.00 4.75
3069 3270 5.130975 TCATCCTCATGTGTAATTAGCCACT 59.869 40.000 7.50 0.00 32.76 4.00
3070 3271 6.326323 TCATCCTCATGTGTAATTAGCCACTA 59.674 38.462 7.50 0.00 32.76 2.74
3071 3272 5.914033 TCCTCATGTGTAATTAGCCACTAC 58.086 41.667 7.50 0.00 32.76 2.73
3072 3273 4.745125 CCTCATGTGTAATTAGCCACTACG 59.255 45.833 7.50 0.00 32.76 3.51
3111 3312 6.018433 ACCCTGAGGATGCAGTAAATAAAT 57.982 37.500 0.00 0.00 36.73 1.40
3132 3333 9.740239 ATAAATGCATATTGCTTTCTAGTGTTG 57.260 29.630 0.00 0.00 45.31 3.33
3133 3334 7.395190 AATGCATATTGCTTTCTAGTGTTGA 57.605 32.000 0.00 0.00 45.31 3.18
3134 3335 6.182039 TGCATATTGCTTTCTAGTGTTGAC 57.818 37.500 0.75 0.00 45.31 3.18
3135 3336 5.939883 TGCATATTGCTTTCTAGTGTTGACT 59.060 36.000 0.75 0.00 45.31 3.41
3136 3337 6.092670 TGCATATTGCTTTCTAGTGTTGACTC 59.907 38.462 0.75 0.00 45.31 3.36
3137 3338 6.092670 GCATATTGCTTTCTAGTGTTGACTCA 59.907 38.462 0.00 0.00 40.96 3.41
3138 3339 7.201679 GCATATTGCTTTCTAGTGTTGACTCAT 60.202 37.037 0.00 0.00 40.96 2.90
3140 3341 5.213891 TGCTTTCTAGTGTTGACTCATCA 57.786 39.130 0.00 0.00 33.21 3.07
3141 3342 5.233225 TGCTTTCTAGTGTTGACTCATCAG 58.767 41.667 0.00 0.00 35.83 2.90
3142 3343 5.221521 TGCTTTCTAGTGTTGACTCATCAGT 60.222 40.000 3.47 3.47 35.83 3.41
3145 3346 6.894339 TTCTAGTGTTGACTCATCAGTGTA 57.106 37.500 7.46 0.00 35.83 2.90
3146 3347 6.502136 TCTAGTGTTGACTCATCAGTGTAG 57.498 41.667 7.46 2.86 35.83 2.74
3147 3348 6.238648 TCTAGTGTTGACTCATCAGTGTAGA 58.761 40.000 7.46 4.61 35.83 2.59
3148 3349 5.791336 AGTGTTGACTCATCAGTGTAGAA 57.209 39.130 0.00 0.00 35.83 2.10
3152 3353 8.031864 AGTGTTGACTCATCAGTGTAGAATTAG 58.968 37.037 0.00 0.00 35.83 1.73
3181 3385 2.370281 AGATGAGTGCGTGTTAGGTG 57.630 50.000 0.00 0.00 0.00 4.00
3227 3431 0.096454 GTTAATGGCGCACGGACTTC 59.904 55.000 10.83 0.00 0.00 3.01
3248 3456 2.101249 CACAGTTGGTTGGTTGAATGCT 59.899 45.455 0.00 0.00 0.00 3.79
3279 3488 0.323725 GCTTCCCTTGCCTTCATCCA 60.324 55.000 0.00 0.00 0.00 3.41
3288 3497 4.221262 CCTTGCCTTCATCCAGATCAAAAA 59.779 41.667 0.00 0.00 0.00 1.94
3332 3541 3.196463 CTCATGCTCAGATCGAAGCTTT 58.804 45.455 19.03 7.79 0.00 3.51
3333 3542 3.193263 TCATGCTCAGATCGAAGCTTTC 58.807 45.455 19.03 0.00 0.00 2.62
3334 3543 2.749280 TGCTCAGATCGAAGCTTTCA 57.251 45.000 19.03 0.00 0.00 2.69
3335 3544 2.341257 TGCTCAGATCGAAGCTTTCAC 58.659 47.619 19.03 0.00 0.00 3.18
3336 3545 2.289010 TGCTCAGATCGAAGCTTTCACA 60.289 45.455 19.03 0.46 0.00 3.58
3337 3546 2.348059 GCTCAGATCGAAGCTTTCACAG 59.652 50.000 13.27 0.00 0.00 3.66
3338 3547 3.583806 CTCAGATCGAAGCTTTCACAGT 58.416 45.455 0.00 0.00 0.00 3.55
3339 3548 4.738124 CTCAGATCGAAGCTTTCACAGTA 58.262 43.478 0.00 0.00 0.00 2.74
3365 3607 5.612725 TTGGCATAAATGAGGGAATTTCC 57.387 39.130 6.91 6.91 35.23 3.13
3379 3621 6.314917 AGGGAATTTCCACAGTAATTCAACT 58.685 36.000 17.08 4.66 39.97 3.16
3409 3651 2.322658 AGGACTGTTCGGTGAAGGTAA 58.677 47.619 0.00 0.00 0.00 2.85
3410 3652 2.701951 AGGACTGTTCGGTGAAGGTAAA 59.298 45.455 0.00 0.00 0.00 2.01
3411 3653 2.804527 GGACTGTTCGGTGAAGGTAAAC 59.195 50.000 0.00 0.00 0.00 2.01
3412 3654 3.460103 GACTGTTCGGTGAAGGTAAACA 58.540 45.455 0.00 0.00 0.00 2.83
3417 3659 1.598601 TCGGTGAAGGTAAACAAACGC 59.401 47.619 0.00 0.00 0.00 4.84
3462 3704 3.220507 TGCTGGAAATGAAGCAATTCG 57.779 42.857 0.00 0.00 46.06 3.34
3470 3712 2.975410 TGAAGCAATTCGCACTGAAG 57.025 45.000 3.32 0.00 46.13 3.02
3504 3749 8.919777 ACAAGATAATAGGGGTAATTTACAGC 57.080 34.615 8.73 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 5.818678 TTGGTATGATATGGGACCACTAC 57.181 43.478 0.00 0.00 41.63 2.73
70 71 6.121776 TGTATTGGTATGATATGGGACCAC 57.878 41.667 0.00 0.00 41.63 4.16
230 232 8.196771 TGGAAGCGCAGATAATTGAATTTATTT 58.803 29.630 11.47 0.00 0.00 1.40
246 249 5.545658 TTAATTCTAAACTGGAAGCGCAG 57.454 39.130 11.47 0.00 37.60 5.18
270 273 7.924412 CCTTACTGATCATGGATTCCATTTTTG 59.076 37.037 15.75 6.57 42.23 2.44
280 283 4.141088 ACCAATGCCTTACTGATCATGGAT 60.141 41.667 12.06 0.00 0.00 3.41
281 284 3.202818 ACCAATGCCTTACTGATCATGGA 59.797 43.478 12.06 0.00 0.00 3.41
282 285 3.317149 CACCAATGCCTTACTGATCATGG 59.683 47.826 0.00 0.00 0.00 3.66
283 286 4.036027 GTCACCAATGCCTTACTGATCATG 59.964 45.833 0.00 0.00 0.00 3.07
284 287 4.202441 GTCACCAATGCCTTACTGATCAT 58.798 43.478 0.00 0.00 0.00 2.45
285 288 3.008923 TGTCACCAATGCCTTACTGATCA 59.991 43.478 0.00 0.00 0.00 2.92
286 289 3.609853 TGTCACCAATGCCTTACTGATC 58.390 45.455 0.00 0.00 0.00 2.92
848 853 3.689161 TGAACTTTCCACGCCTTATCATG 59.311 43.478 0.00 0.00 0.00 3.07
914 919 1.449956 GAGCAGCAGGAGAAGGCAG 60.450 63.158 0.00 0.00 0.00 4.85
974 982 7.809238 TGGAGTAGAGTACTATGCTACCTTTA 58.191 38.462 14.37 0.00 39.59 1.85
980 988 6.010850 CCCATTGGAGTAGAGTACTATGCTA 58.989 44.000 8.16 0.00 39.59 3.49
1029 1043 2.291540 CCATGGACCTTTCTTTAGGCCA 60.292 50.000 5.56 0.00 42.04 5.36
1053 1067 1.133199 AGCTTCTCATCCTCCTCCGAT 60.133 52.381 0.00 0.00 0.00 4.18
1054 1068 0.260230 AGCTTCTCATCCTCCTCCGA 59.740 55.000 0.00 0.00 0.00 4.55
1065 1079 0.473755 TGTGGGCAAGAAGCTTCTCA 59.526 50.000 28.58 18.91 44.79 3.27
1098 1112 4.783621 GCACGCCAGCTCCCATGA 62.784 66.667 0.00 0.00 0.00 3.07
1101 1115 4.349503 AATGCACGCCAGCTCCCA 62.350 61.111 0.00 0.00 34.99 4.37
1122 1136 0.543410 TAGACTCACCGGCCTTGGAA 60.543 55.000 0.00 0.00 0.00 3.53
1199 1213 1.909302 AGATGTTGGTCGAACCCTCAT 59.091 47.619 0.00 0.00 37.50 2.90
1247 1261 1.351076 TGGTCCATCTCAGTCTGCAA 58.649 50.000 0.00 0.00 0.00 4.08
1390 1408 4.755123 AGTTGGTAACTGTGCTGTGATAAC 59.245 41.667 0.00 0.00 41.01 1.89
1395 1413 4.554723 GCTTAAGTTGGTAACTGTGCTGTG 60.555 45.833 4.02 0.00 41.91 3.66
1423 1441 7.397892 CAGAAGGATCTGTACTACTCTGAAA 57.602 40.000 0.00 0.00 46.60 2.69
1488 1506 5.125257 CAGAGACTCTGCACTTGATCTTAGA 59.875 44.000 19.25 0.00 37.72 2.10
1551 1569 1.577922 CGAAACACCCGTCGAGAGA 59.422 57.895 0.00 0.00 39.64 3.10
1552 1570 1.443872 CCGAAACACCCGTCGAGAG 60.444 63.158 0.00 0.00 39.64 3.20
1553 1571 1.246056 ATCCGAAACACCCGTCGAGA 61.246 55.000 0.00 0.00 39.64 4.04
1556 1574 1.930567 ATTATCCGAAACACCCGTCG 58.069 50.000 0.00 0.00 37.01 5.12
1559 1577 4.632688 ACTACAAATTATCCGAAACACCCG 59.367 41.667 0.00 0.00 0.00 5.28
1560 1578 5.413523 ACACTACAAATTATCCGAAACACCC 59.586 40.000 0.00 0.00 0.00 4.61
1561 1579 6.490566 ACACTACAAATTATCCGAAACACC 57.509 37.500 0.00 0.00 0.00 4.16
1562 1580 7.577979 TCAACACTACAAATTATCCGAAACAC 58.422 34.615 0.00 0.00 0.00 3.32
1563 1581 7.731882 TCAACACTACAAATTATCCGAAACA 57.268 32.000 0.00 0.00 0.00 2.83
1564 1582 9.061610 CATTCAACACTACAAATTATCCGAAAC 57.938 33.333 0.00 0.00 0.00 2.78
1565 1583 7.753132 GCATTCAACACTACAAATTATCCGAAA 59.247 33.333 0.00 0.00 0.00 3.46
1880 1969 1.258445 CCTACAGGAGCTCCGTTGGT 61.258 60.000 30.57 26.11 42.08 3.67
1884 1973 2.037367 TGCCTACAGGAGCTCCGT 59.963 61.111 26.95 26.40 42.08 4.69
1912 2028 0.409092 ATTGGGCCATGTGGTTGAGA 59.591 50.000 7.26 0.00 37.57 3.27
1917 2033 2.039299 CCCATTGGGCCATGTGGT 59.961 61.111 27.18 4.38 35.35 4.16
2023 2139 1.340991 GGCTCTGGCAGGTTTATTGGA 60.341 52.381 15.73 0.00 40.87 3.53
2119 2238 7.259882 TGTTATTATTACCGATGAACGTCAGT 58.740 34.615 0.00 0.00 40.78 3.41
2155 2274 1.600916 GTTGCTTTCAGACGCCCCT 60.601 57.895 0.00 0.00 0.00 4.79
2159 2278 1.493311 CGGAGTTGCTTTCAGACGC 59.507 57.895 0.00 0.00 0.00 5.19
2160 2279 1.493311 GCGGAGTTGCTTTCAGACG 59.507 57.895 0.00 0.00 0.00 4.18
2161 2280 0.944311 TCGCGGAGTTGCTTTCAGAC 60.944 55.000 6.13 0.00 0.00 3.51
2167 2286 2.034879 CCACATCGCGGAGTTGCTT 61.035 57.895 6.13 0.00 0.00 3.91
2168 2287 2.434884 CCACATCGCGGAGTTGCT 60.435 61.111 6.13 0.00 0.00 3.91
2171 2290 0.034896 AACTTCCACATCGCGGAGTT 59.965 50.000 6.13 3.03 33.01 3.01
2174 2293 0.389817 CTCAACTTCCACATCGCGGA 60.390 55.000 6.13 0.00 0.00 5.54
2177 2296 1.129437 GCTTCTCAACTTCCACATCGC 59.871 52.381 0.00 0.00 0.00 4.58
2181 2300 2.037121 TCATCGCTTCTCAACTTCCACA 59.963 45.455 0.00 0.00 0.00 4.17
2210 2329 1.372997 GGACGCTGTTCTCTTCGCA 60.373 57.895 0.00 0.00 0.00 5.10
2219 2338 0.180406 AGGAACTTGTGGACGCTGTT 59.820 50.000 0.00 0.00 27.25 3.16
2227 2346 1.738099 CTCGCGGAGGAACTTGTGG 60.738 63.158 6.13 0.00 41.55 4.17
2229 2348 2.048127 GCTCGCGGAGGAACTTGT 60.048 61.111 6.13 0.00 41.55 3.16
2260 2379 1.684049 CCTCTCCTCGCCTTCCAGT 60.684 63.158 0.00 0.00 0.00 4.00
2271 2390 0.985490 GATGTGCCTTCCCCTCTCCT 60.985 60.000 0.00 0.00 0.00 3.69
2282 2401 2.412323 CGCAGCCAATGATGTGCCT 61.412 57.895 0.00 0.00 30.87 4.75
2283 2402 2.103538 CGCAGCCAATGATGTGCC 59.896 61.111 0.00 0.00 30.87 5.01
2365 2490 2.633488 GACTCACCCCAGCAATCTAAC 58.367 52.381 0.00 0.00 0.00 2.34
2367 2492 1.204146 GGACTCACCCCAGCAATCTA 58.796 55.000 0.00 0.00 0.00 1.98
2368 2493 0.842030 TGGACTCACCCCAGCAATCT 60.842 55.000 0.00 0.00 38.00 2.40
2425 2574 4.200283 CTGCCGCTCTCTCCGTCC 62.200 72.222 0.00 0.00 0.00 4.79
2520 2669 0.896940 ACGGCCGTTGTCCTAGAGAA 60.897 55.000 28.70 0.00 0.00 2.87
2521 2670 1.303888 ACGGCCGTTGTCCTAGAGA 60.304 57.895 28.70 0.00 0.00 3.10
2522 2671 1.139095 GACGGCCGTTGTCCTAGAG 59.861 63.158 34.65 0.00 0.00 2.43
2523 2672 1.303888 AGACGGCCGTTGTCCTAGA 60.304 57.895 34.65 0.00 37.04 2.43
2524 2673 1.139095 GAGACGGCCGTTGTCCTAG 59.861 63.158 34.65 0.00 37.04 3.02
2525 2674 0.035152 TAGAGACGGCCGTTGTCCTA 60.035 55.000 34.65 24.85 37.04 2.94
2526 2675 1.303888 TAGAGACGGCCGTTGTCCT 60.304 57.895 34.65 24.80 37.04 3.85
2527 2676 1.153881 GTAGAGACGGCCGTTGTCC 60.154 63.158 34.65 19.93 37.04 4.02
2528 2677 0.172803 ATGTAGAGACGGCCGTTGTC 59.827 55.000 34.65 29.60 36.60 3.18
2529 2678 0.606604 AATGTAGAGACGGCCGTTGT 59.393 50.000 34.65 23.35 0.00 3.32
2530 2679 1.135083 AGAATGTAGAGACGGCCGTTG 60.135 52.381 34.65 2.63 0.00 4.10
2531 2680 1.183549 AGAATGTAGAGACGGCCGTT 58.816 50.000 34.65 21.99 0.00 4.44
2532 2681 1.134560 GAAGAATGTAGAGACGGCCGT 59.865 52.381 34.89 34.89 0.00 5.68
2533 2682 1.405821 AGAAGAATGTAGAGACGGCCG 59.594 52.381 26.86 26.86 0.00 6.13
2534 2683 3.131400 AGAAGAAGAATGTAGAGACGGCC 59.869 47.826 0.00 0.00 0.00 6.13
2535 2684 4.379339 AGAAGAAGAATGTAGAGACGGC 57.621 45.455 0.00 0.00 0.00 5.68
2536 2685 7.093992 AGAAAAGAAGAAGAATGTAGAGACGG 58.906 38.462 0.00 0.00 0.00 4.79
2537 2686 8.527567 AAGAAAAGAAGAAGAATGTAGAGACG 57.472 34.615 0.00 0.00 0.00 4.18
2539 2688 9.495572 GGAAAGAAAAGAAGAAGAATGTAGAGA 57.504 33.333 0.00 0.00 0.00 3.10
2540 2689 8.439286 CGGAAAGAAAAGAAGAAGAATGTAGAG 58.561 37.037 0.00 0.00 0.00 2.43
2541 2690 7.387948 CCGGAAAGAAAAGAAGAAGAATGTAGA 59.612 37.037 0.00 0.00 0.00 2.59
2542 2691 7.522374 CCGGAAAGAAAAGAAGAAGAATGTAG 58.478 38.462 0.00 0.00 0.00 2.74
2543 2692 6.072673 GCCGGAAAGAAAAGAAGAAGAATGTA 60.073 38.462 5.05 0.00 0.00 2.29
2544 2693 5.278512 GCCGGAAAGAAAAGAAGAAGAATGT 60.279 40.000 5.05 0.00 0.00 2.71
2545 2694 5.157067 GCCGGAAAGAAAAGAAGAAGAATG 58.843 41.667 5.05 0.00 0.00 2.67
2546 2695 4.218635 GGCCGGAAAGAAAAGAAGAAGAAT 59.781 41.667 5.05 0.00 0.00 2.40
2547 2696 3.568430 GGCCGGAAAGAAAAGAAGAAGAA 59.432 43.478 5.05 0.00 0.00 2.52
2548 2697 3.146847 GGCCGGAAAGAAAAGAAGAAGA 58.853 45.455 5.05 0.00 0.00 2.87
2549 2698 2.884639 TGGCCGGAAAGAAAAGAAGAAG 59.115 45.455 5.05 0.00 0.00 2.85
2550 2699 2.884639 CTGGCCGGAAAGAAAAGAAGAA 59.115 45.455 5.28 0.00 0.00 2.52
2551 2700 2.504367 CTGGCCGGAAAGAAAAGAAGA 58.496 47.619 5.28 0.00 0.00 2.87
2552 2701 1.541588 CCTGGCCGGAAAGAAAAGAAG 59.458 52.381 15.09 0.00 33.16 2.85
2553 2702 1.616159 CCTGGCCGGAAAGAAAAGAA 58.384 50.000 15.09 0.00 33.16 2.52
2554 2703 0.251165 CCCTGGCCGGAAAGAAAAGA 60.251 55.000 15.09 0.00 33.16 2.52
2555 2704 1.877576 GCCCTGGCCGGAAAGAAAAG 61.878 60.000 15.09 0.00 34.56 2.27
2556 2705 1.906333 GCCCTGGCCGGAAAGAAAA 60.906 57.895 15.09 0.00 34.56 2.29
2557 2706 2.282887 GCCCTGGCCGGAAAGAAA 60.283 61.111 15.09 0.00 34.56 2.52
2558 2707 2.840753 AAGCCCTGGCCGGAAAGAA 61.841 57.895 15.09 0.00 43.17 2.52
2559 2708 3.256960 AAGCCCTGGCCGGAAAGA 61.257 61.111 15.09 0.00 43.17 2.52
2560 2709 3.064324 CAAGCCCTGGCCGGAAAG 61.064 66.667 15.09 0.02 43.17 2.62
2574 2723 2.606725 CGTCCTAGAGAAATGCTGCAAG 59.393 50.000 6.36 0.00 0.00 4.01
2575 2724 2.233676 TCGTCCTAGAGAAATGCTGCAA 59.766 45.455 6.36 0.00 0.00 4.08
2576 2725 1.824852 TCGTCCTAGAGAAATGCTGCA 59.175 47.619 4.13 4.13 0.00 4.41
2577 2726 2.197577 GTCGTCCTAGAGAAATGCTGC 58.802 52.381 0.00 0.00 0.00 5.25
2578 2727 2.455032 CGTCGTCCTAGAGAAATGCTG 58.545 52.381 0.00 0.00 0.00 4.41
2579 2728 1.405821 CCGTCGTCCTAGAGAAATGCT 59.594 52.381 0.00 0.00 0.00 3.79
2580 2729 1.841450 CCGTCGTCCTAGAGAAATGC 58.159 55.000 0.00 0.00 0.00 3.56
2581 2730 1.536284 GGCCGTCGTCCTAGAGAAATG 60.536 57.143 0.00 0.00 0.00 2.32
2582 2731 0.745468 GGCCGTCGTCCTAGAGAAAT 59.255 55.000 0.00 0.00 0.00 2.17
2583 2732 1.651240 CGGCCGTCGTCCTAGAGAAA 61.651 60.000 19.50 0.00 0.00 2.52
2624 2806 3.064324 CAAGCCCTGGCCGGAAAG 61.064 66.667 15.09 0.02 43.17 2.62
2638 2820 2.606725 CGTCCTAGAGAAATGCTGCAAG 59.393 50.000 6.36 0.00 0.00 4.01
2639 2821 2.233676 TCGTCCTAGAGAAATGCTGCAA 59.766 45.455 6.36 0.00 0.00 4.08
2640 2822 1.824852 TCGTCCTAGAGAAATGCTGCA 59.175 47.619 4.13 4.13 0.00 4.41
2641 2823 2.197577 GTCGTCCTAGAGAAATGCTGC 58.802 52.381 0.00 0.00 0.00 5.25
2642 2824 2.455032 CGTCGTCCTAGAGAAATGCTG 58.545 52.381 0.00 0.00 0.00 4.41
2643 2825 1.405821 CCGTCGTCCTAGAGAAATGCT 59.594 52.381 0.00 0.00 0.00 3.79
2644 2826 1.841450 CCGTCGTCCTAGAGAAATGC 58.159 55.000 0.00 0.00 0.00 3.56
2645 2827 1.536284 GGCCGTCGTCCTAGAGAAATG 60.536 57.143 0.00 0.00 0.00 2.32
2646 2828 0.745468 GGCCGTCGTCCTAGAGAAAT 59.255 55.000 0.00 0.00 0.00 2.17
2647 2829 1.651240 CGGCCGTCGTCCTAGAGAAA 61.651 60.000 19.50 0.00 0.00 2.52
2648 2830 2.110967 CGGCCGTCGTCCTAGAGAA 61.111 63.158 19.50 0.00 0.00 2.87
2649 2831 2.513204 CGGCCGTCGTCCTAGAGA 60.513 66.667 19.50 0.00 0.00 3.10
2659 2841 0.739561 AGAATGTAGAGACGGCCGTC 59.260 55.000 43.92 43.92 44.86 4.79
2660 2842 1.134560 GAAGAATGTAGAGACGGCCGT 59.865 52.381 34.89 34.89 0.00 5.68
2661 2843 1.405821 AGAAGAATGTAGAGACGGCCG 59.594 52.381 26.86 26.86 0.00 6.13
2662 2844 3.131400 AGAAGAAGAATGTAGAGACGGCC 59.869 47.826 0.00 0.00 0.00 6.13
2663 2845 4.379339 AGAAGAAGAATGTAGAGACGGC 57.621 45.455 0.00 0.00 0.00 5.68
2664 2846 7.093992 AGAAAAGAAGAAGAATGTAGAGACGG 58.906 38.462 0.00 0.00 0.00 4.79
2665 2847 8.527567 AAGAAAAGAAGAAGAATGTAGAGACG 57.472 34.615 0.00 0.00 0.00 4.18
2667 2849 9.495572 GGAAAGAAAAGAAGAAGAATGTAGAGA 57.504 33.333 0.00 0.00 0.00 3.10
2668 2850 8.439286 CGGAAAGAAAAGAAGAAGAATGTAGAG 58.561 37.037 0.00 0.00 0.00 2.43
2669 2851 7.387948 CCGGAAAGAAAAGAAGAAGAATGTAGA 59.612 37.037 0.00 0.00 0.00 2.59
2670 2852 7.522374 CCGGAAAGAAAAGAAGAAGAATGTAG 58.478 38.462 0.00 0.00 0.00 2.74
2671 2853 6.072673 GCCGGAAAGAAAAGAAGAAGAATGTA 60.073 38.462 5.05 0.00 0.00 2.29
2672 2854 5.278512 GCCGGAAAGAAAAGAAGAAGAATGT 60.279 40.000 5.05 0.00 0.00 2.71
2673 2855 5.157067 GCCGGAAAGAAAAGAAGAAGAATG 58.843 41.667 5.05 0.00 0.00 2.67
2674 2856 4.218635 GGCCGGAAAGAAAAGAAGAAGAAT 59.781 41.667 5.05 0.00 0.00 2.40
2675 2857 3.568430 GGCCGGAAAGAAAAGAAGAAGAA 59.432 43.478 5.05 0.00 0.00 2.52
2676 2858 3.146847 GGCCGGAAAGAAAAGAAGAAGA 58.853 45.455 5.05 0.00 0.00 2.87
2677 2859 2.884639 TGGCCGGAAAGAAAAGAAGAAG 59.115 45.455 5.05 0.00 0.00 2.85
2678 2860 2.884639 CTGGCCGGAAAGAAAAGAAGAA 59.115 45.455 5.28 0.00 0.00 2.52
2679 2861 2.504367 CTGGCCGGAAAGAAAAGAAGA 58.496 47.619 5.28 0.00 0.00 2.87
2680 2862 1.541588 CCTGGCCGGAAAGAAAAGAAG 59.458 52.381 15.09 0.00 33.16 2.85
2681 2863 1.616159 CCTGGCCGGAAAGAAAAGAA 58.384 50.000 15.09 0.00 33.16 2.52
2682 2864 0.251165 CCCTGGCCGGAAAGAAAAGA 60.251 55.000 15.09 0.00 33.16 2.52
2683 2865 1.877576 GCCCTGGCCGGAAAGAAAAG 61.878 60.000 15.09 0.00 34.56 2.27
2684 2866 1.906333 GCCCTGGCCGGAAAGAAAA 60.906 57.895 15.09 0.00 34.56 2.29
2685 2867 2.282887 GCCCTGGCCGGAAAGAAA 60.283 61.111 15.09 0.00 34.56 2.52
2686 2868 2.840753 AAGCCCTGGCCGGAAAGAA 61.841 57.895 15.09 0.00 43.17 2.52
2687 2869 3.256960 AAGCCCTGGCCGGAAAGA 61.257 61.111 15.09 0.00 43.17 2.52
2688 2870 3.064324 CAAGCCCTGGCCGGAAAG 61.064 66.667 15.09 0.02 43.17 2.62
2702 2884 2.606725 CGTCCTAGAGAAATGCTGCAAG 59.393 50.000 6.36 0.00 0.00 4.01
2703 2885 2.233676 TCGTCCTAGAGAAATGCTGCAA 59.766 45.455 6.36 0.00 0.00 4.08
2704 2886 1.824852 TCGTCCTAGAGAAATGCTGCA 59.175 47.619 4.13 4.13 0.00 4.41
2705 2887 2.197577 GTCGTCCTAGAGAAATGCTGC 58.802 52.381 0.00 0.00 0.00 5.25
2706 2888 2.455032 CGTCGTCCTAGAGAAATGCTG 58.545 52.381 0.00 0.00 0.00 4.41
2707 2889 1.405821 CCGTCGTCCTAGAGAAATGCT 59.594 52.381 0.00 0.00 0.00 3.79
2708 2890 1.841450 CCGTCGTCCTAGAGAAATGC 58.159 55.000 0.00 0.00 0.00 3.56
2709 2891 1.536284 GGCCGTCGTCCTAGAGAAATG 60.536 57.143 0.00 0.00 0.00 2.32
2710 2892 0.745468 GGCCGTCGTCCTAGAGAAAT 59.255 55.000 0.00 0.00 0.00 2.17
2711 2893 1.651240 CGGCCGTCGTCCTAGAGAAA 61.651 60.000 19.50 0.00 0.00 2.52
2712 2894 2.110967 CGGCCGTCGTCCTAGAGAA 61.111 63.158 19.50 0.00 0.00 2.87
2713 2895 2.513204 CGGCCGTCGTCCTAGAGA 60.513 66.667 19.50 0.00 0.00 3.10
2723 2905 0.739561 AGAATGTAGAGACGGCCGTC 59.260 55.000 43.92 43.92 44.86 4.79
2724 2906 1.134560 GAAGAATGTAGAGACGGCCGT 59.865 52.381 34.89 34.89 0.00 5.68
2725 2907 1.405821 AGAAGAATGTAGAGACGGCCG 59.594 52.381 26.86 26.86 0.00 6.13
2726 2908 3.131400 AGAAGAAGAATGTAGAGACGGCC 59.869 47.826 0.00 0.00 0.00 6.13
2727 2909 4.379339 AGAAGAAGAATGTAGAGACGGC 57.621 45.455 0.00 0.00 0.00 5.68
2728 2910 7.093992 AGAAAAGAAGAAGAATGTAGAGACGG 58.906 38.462 0.00 0.00 0.00 4.79
2729 2911 8.527567 AAGAAAAGAAGAAGAATGTAGAGACG 57.472 34.615 0.00 0.00 0.00 4.18
2733 2915 9.277783 CCAGAAAGAAAAGAAGAAGAATGTAGA 57.722 33.333 0.00 0.00 0.00 2.59
2734 2916 8.020244 GCCAGAAAGAAAAGAAGAAGAATGTAG 58.980 37.037 0.00 0.00 0.00 2.74
2735 2917 7.040409 GGCCAGAAAGAAAAGAAGAAGAATGTA 60.040 37.037 0.00 0.00 0.00 2.29
2736 2918 6.239148 GGCCAGAAAGAAAAGAAGAAGAATGT 60.239 38.462 0.00 0.00 0.00 2.71
2737 2919 6.155136 GGCCAGAAAGAAAAGAAGAAGAATG 58.845 40.000 0.00 0.00 0.00 2.67
2738 2920 5.835280 TGGCCAGAAAGAAAAGAAGAAGAAT 59.165 36.000 0.00 0.00 0.00 2.40
2739 2921 5.200483 TGGCCAGAAAGAAAAGAAGAAGAA 58.800 37.500 0.00 0.00 0.00 2.52
2740 2922 4.792068 TGGCCAGAAAGAAAAGAAGAAGA 58.208 39.130 0.00 0.00 0.00 2.87
2741 2923 4.022503 CCTGGCCAGAAAGAAAAGAAGAAG 60.023 45.833 34.91 7.23 0.00 2.85
2742 2924 3.891366 CCTGGCCAGAAAGAAAAGAAGAA 59.109 43.478 34.91 0.00 0.00 2.52
2743 2925 3.490348 CCTGGCCAGAAAGAAAAGAAGA 58.510 45.455 34.91 0.00 0.00 2.87
2744 2926 2.560105 CCCTGGCCAGAAAGAAAAGAAG 59.440 50.000 34.91 12.14 0.00 2.85
2745 2927 2.597455 CCCTGGCCAGAAAGAAAAGAA 58.403 47.619 34.91 0.00 0.00 2.52
2746 2928 1.823250 GCCCTGGCCAGAAAGAAAAGA 60.823 52.381 34.91 0.00 34.56 2.52
2747 2929 0.605083 GCCCTGGCCAGAAAGAAAAG 59.395 55.000 34.91 14.22 34.56 2.27
2748 2930 0.188342 AGCCCTGGCCAGAAAGAAAA 59.812 50.000 34.91 0.00 43.17 2.29
2749 2931 0.188342 AAGCCCTGGCCAGAAAGAAA 59.812 50.000 34.91 0.00 43.17 2.52
2750 2932 0.540365 CAAGCCCTGGCCAGAAAGAA 60.540 55.000 34.91 0.00 43.17 2.52
2751 2933 1.075482 CAAGCCCTGGCCAGAAAGA 59.925 57.895 34.91 0.00 43.17 2.52
2752 2934 2.643232 GCAAGCCCTGGCCAGAAAG 61.643 63.158 34.91 21.95 43.17 2.62
2753 2935 2.601367 GCAAGCCCTGGCCAGAAA 60.601 61.111 34.91 0.00 43.17 2.52
2754 2936 3.873679 CTGCAAGCCCTGGCCAGAA 62.874 63.158 34.91 0.08 43.17 3.02
2755 2937 4.355720 CTGCAAGCCCTGGCCAGA 62.356 66.667 34.91 11.29 43.17 3.86
2766 2948 2.606725 CGTCCTAGAGAAATGCTGCAAG 59.393 50.000 6.36 0.00 0.00 4.01
2767 2949 2.233676 TCGTCCTAGAGAAATGCTGCAA 59.766 45.455 6.36 0.00 0.00 4.08
2768 2950 1.824852 TCGTCCTAGAGAAATGCTGCA 59.175 47.619 4.13 4.13 0.00 4.41
2769 2951 2.197577 GTCGTCCTAGAGAAATGCTGC 58.802 52.381 0.00 0.00 0.00 5.25
2770 2952 2.455032 CGTCGTCCTAGAGAAATGCTG 58.545 52.381 0.00 0.00 0.00 4.41
2771 2953 1.405821 CCGTCGTCCTAGAGAAATGCT 59.594 52.381 0.00 0.00 0.00 3.79
2772 2954 1.841450 CCGTCGTCCTAGAGAAATGC 58.159 55.000 0.00 0.00 0.00 3.56
2773 2955 1.536284 GGCCGTCGTCCTAGAGAAATG 60.536 57.143 0.00 0.00 0.00 2.32
2774 2956 0.745468 GGCCGTCGTCCTAGAGAAAT 59.255 55.000 0.00 0.00 0.00 2.17
2775 2957 1.651240 CGGCCGTCGTCCTAGAGAAA 61.651 60.000 19.50 0.00 0.00 2.52
2776 2958 2.110967 CGGCCGTCGTCCTAGAGAA 61.111 63.158 19.50 0.00 0.00 2.87
2777 2959 2.513204 CGGCCGTCGTCCTAGAGA 60.513 66.667 19.50 0.00 0.00 3.10
2787 2969 0.739561 AGAATGTAGAGACGGCCGTC 59.260 55.000 43.92 43.92 44.86 4.79
2788 2970 1.134560 GAAGAATGTAGAGACGGCCGT 59.865 52.381 34.89 34.89 0.00 5.68
2789 2971 1.405821 AGAAGAATGTAGAGACGGCCG 59.594 52.381 26.86 26.86 0.00 6.13
2790 2972 3.131400 AGAAGAAGAATGTAGAGACGGCC 59.869 47.826 0.00 0.00 0.00 6.13
2791 2973 4.379339 AGAAGAAGAATGTAGAGACGGC 57.621 45.455 0.00 0.00 0.00 5.68
2792 2974 7.093992 AGAAAAGAAGAAGAATGTAGAGACGG 58.906 38.462 0.00 0.00 0.00 4.79
2793 2975 8.527567 AAGAAAAGAAGAAGAATGTAGAGACG 57.472 34.615 0.00 0.00 0.00 4.18
2795 2977 9.495572 GGAAAGAAAAGAAGAAGAATGTAGAGA 57.504 33.333 0.00 0.00 0.00 3.10
2796 2978 8.439286 CGGAAAGAAAAGAAGAAGAATGTAGAG 58.561 37.037 0.00 0.00 0.00 2.43
2797 2979 7.387948 CCGGAAAGAAAAGAAGAAGAATGTAGA 59.612 37.037 0.00 0.00 0.00 2.59
2798 2980 7.522374 CCGGAAAGAAAAGAAGAAGAATGTAG 58.478 38.462 0.00 0.00 0.00 2.74
2799 2981 6.072673 GCCGGAAAGAAAAGAAGAAGAATGTA 60.073 38.462 5.05 0.00 0.00 2.29
2800 2982 5.278512 GCCGGAAAGAAAAGAAGAAGAATGT 60.279 40.000 5.05 0.00 0.00 2.71
2801 2983 5.157067 GCCGGAAAGAAAAGAAGAAGAATG 58.843 41.667 5.05 0.00 0.00 2.67
2802 2984 4.218635 GGCCGGAAAGAAAAGAAGAAGAAT 59.781 41.667 5.05 0.00 0.00 2.40
2803 2985 3.568430 GGCCGGAAAGAAAAGAAGAAGAA 59.432 43.478 5.05 0.00 0.00 2.52
2804 2986 3.146847 GGCCGGAAAGAAAAGAAGAAGA 58.853 45.455 5.05 0.00 0.00 2.87
2805 2987 2.884639 TGGCCGGAAAGAAAAGAAGAAG 59.115 45.455 5.05 0.00 0.00 2.85
2806 2988 2.884639 CTGGCCGGAAAGAAAAGAAGAA 59.115 45.455 5.28 0.00 0.00 2.52
2807 2989 2.504367 CTGGCCGGAAAGAAAAGAAGA 58.496 47.619 5.28 0.00 0.00 2.87
2808 2990 1.541588 CCTGGCCGGAAAGAAAAGAAG 59.458 52.381 15.09 0.00 33.16 2.85
2809 2991 1.616159 CCTGGCCGGAAAGAAAAGAA 58.384 50.000 15.09 0.00 33.16 2.52
2810 2992 0.251165 CCCTGGCCGGAAAGAAAAGA 60.251 55.000 15.09 0.00 33.16 2.52
2811 2993 1.877576 GCCCTGGCCGGAAAGAAAAG 61.878 60.000 15.09 0.00 34.56 2.27
2812 2994 1.906333 GCCCTGGCCGGAAAGAAAA 60.906 57.895 15.09 0.00 34.56 2.29
2813 2995 2.282887 GCCCTGGCCGGAAAGAAA 60.283 61.111 15.09 0.00 34.56 2.52
2814 2996 2.840753 AAGCCCTGGCCGGAAAGAA 61.841 57.895 15.09 0.00 43.17 2.52
2815 2997 3.256960 AAGCCCTGGCCGGAAAGA 61.257 61.111 15.09 0.00 43.17 2.52
2816 2998 3.064324 CAAGCCCTGGCCGGAAAG 61.064 66.667 15.09 0.02 43.17 2.62
2830 3012 2.606725 CGTCCTAGAGAAATGCTGCAAG 59.393 50.000 6.36 0.00 0.00 4.01
2831 3013 2.233676 TCGTCCTAGAGAAATGCTGCAA 59.766 45.455 6.36 0.00 0.00 4.08
2832 3014 1.824852 TCGTCCTAGAGAAATGCTGCA 59.175 47.619 4.13 4.13 0.00 4.41
2833 3015 2.197577 GTCGTCCTAGAGAAATGCTGC 58.802 52.381 0.00 0.00 0.00 5.25
2834 3016 2.455032 CGTCGTCCTAGAGAAATGCTG 58.545 52.381 0.00 0.00 0.00 4.41
2835 3017 1.405821 CCGTCGTCCTAGAGAAATGCT 59.594 52.381 0.00 0.00 0.00 3.79
2836 3018 1.841450 CCGTCGTCCTAGAGAAATGC 58.159 55.000 0.00 0.00 0.00 3.56
2837 3019 1.536284 GGCCGTCGTCCTAGAGAAATG 60.536 57.143 0.00 0.00 0.00 2.32
2838 3020 0.745468 GGCCGTCGTCCTAGAGAAAT 59.255 55.000 0.00 0.00 0.00 2.17
2839 3021 1.651240 CGGCCGTCGTCCTAGAGAAA 61.651 60.000 19.50 0.00 0.00 2.52
2840 3022 2.110967 CGGCCGTCGTCCTAGAGAA 61.111 63.158 19.50 0.00 0.00 2.87
2841 3023 2.513204 CGGCCGTCGTCCTAGAGA 60.513 66.667 19.50 0.00 0.00 3.10
2851 3033 0.739561 AGAATGTAGAGACGGCCGTC 59.260 55.000 43.92 43.92 44.86 4.79
2852 3034 1.134560 GAAGAATGTAGAGACGGCCGT 59.865 52.381 34.89 34.89 0.00 5.68
2853 3035 1.405821 AGAAGAATGTAGAGACGGCCG 59.594 52.381 26.86 26.86 0.00 6.13
2854 3036 3.131400 AGAAGAAGAATGTAGAGACGGCC 59.869 47.826 0.00 0.00 0.00 6.13
2855 3037 4.379339 AGAAGAAGAATGTAGAGACGGC 57.621 45.455 0.00 0.00 0.00 5.68
2856 3038 7.093992 AGAAAAGAAGAAGAATGTAGAGACGG 58.906 38.462 0.00 0.00 0.00 4.79
2857 3039 8.527567 AAGAAAAGAAGAAGAATGTAGAGACG 57.472 34.615 0.00 0.00 0.00 4.18
2859 3041 9.495572 GGAAAGAAAAGAAGAAGAATGTAGAGA 57.504 33.333 0.00 0.00 0.00 3.10
2860 3042 8.439286 CGGAAAGAAAAGAAGAAGAATGTAGAG 58.561 37.037 0.00 0.00 0.00 2.43
2861 3043 7.387948 CCGGAAAGAAAAGAAGAAGAATGTAGA 59.612 37.037 0.00 0.00 0.00 2.59
2862 3044 7.522374 CCGGAAAGAAAAGAAGAAGAATGTAG 58.478 38.462 0.00 0.00 0.00 2.74
2863 3045 6.072673 GCCGGAAAGAAAAGAAGAAGAATGTA 60.073 38.462 5.05 0.00 0.00 2.29
2864 3046 5.278512 GCCGGAAAGAAAAGAAGAAGAATGT 60.279 40.000 5.05 0.00 0.00 2.71
2865 3047 5.157067 GCCGGAAAGAAAAGAAGAAGAATG 58.843 41.667 5.05 0.00 0.00 2.67
2866 3048 4.218635 GGCCGGAAAGAAAAGAAGAAGAAT 59.781 41.667 5.05 0.00 0.00 2.40
2867 3049 3.568430 GGCCGGAAAGAAAAGAAGAAGAA 59.432 43.478 5.05 0.00 0.00 2.52
2868 3050 3.146847 GGCCGGAAAGAAAAGAAGAAGA 58.853 45.455 5.05 0.00 0.00 2.87
2869 3051 2.884639 TGGCCGGAAAGAAAAGAAGAAG 59.115 45.455 5.05 0.00 0.00 2.85
2870 3052 2.884639 CTGGCCGGAAAGAAAAGAAGAA 59.115 45.455 5.28 0.00 0.00 2.52
2871 3053 2.504367 CTGGCCGGAAAGAAAAGAAGA 58.496 47.619 5.28 0.00 0.00 2.87
2872 3054 1.541588 CCTGGCCGGAAAGAAAAGAAG 59.458 52.381 15.09 0.00 33.16 2.85
2873 3055 1.616159 CCTGGCCGGAAAGAAAAGAA 58.384 50.000 15.09 0.00 33.16 2.52
2874 3056 0.251165 CCCTGGCCGGAAAGAAAAGA 60.251 55.000 15.09 0.00 33.16 2.52
2875 3057 1.877576 GCCCTGGCCGGAAAGAAAAG 61.878 60.000 15.09 0.00 34.56 2.27
2876 3058 1.906333 GCCCTGGCCGGAAAGAAAA 60.906 57.895 15.09 0.00 34.56 2.29
2877 3059 2.282887 GCCCTGGCCGGAAAGAAA 60.283 61.111 15.09 0.00 34.56 2.52
2878 3060 2.840753 AAGCCCTGGCCGGAAAGAA 61.841 57.895 15.09 0.00 43.17 2.52
2879 3061 3.256960 AAGCCCTGGCCGGAAAGA 61.257 61.111 15.09 0.00 43.17 2.52
2880 3062 3.064324 CAAGCCCTGGCCGGAAAG 61.064 66.667 15.09 0.02 43.17 2.62
2894 3076 2.606725 CGTCCTAGAGAAATGCTGCAAG 59.393 50.000 6.36 0.00 0.00 4.01
2895 3077 2.233676 TCGTCCTAGAGAAATGCTGCAA 59.766 45.455 6.36 0.00 0.00 4.08
2896 3078 1.824852 TCGTCCTAGAGAAATGCTGCA 59.175 47.619 4.13 4.13 0.00 4.41
2897 3079 2.197577 GTCGTCCTAGAGAAATGCTGC 58.802 52.381 0.00 0.00 0.00 5.25
2898 3080 2.455032 CGTCGTCCTAGAGAAATGCTG 58.545 52.381 0.00 0.00 0.00 4.41
2899 3081 1.405821 CCGTCGTCCTAGAGAAATGCT 59.594 52.381 0.00 0.00 0.00 3.79
2900 3082 1.841450 CCGTCGTCCTAGAGAAATGC 58.159 55.000 0.00 0.00 0.00 3.56
2901 3083 1.536284 GGCCGTCGTCCTAGAGAAATG 60.536 57.143 0.00 0.00 0.00 2.32
2902 3084 0.745468 GGCCGTCGTCCTAGAGAAAT 59.255 55.000 0.00 0.00 0.00 2.17
2903 3085 1.651240 CGGCCGTCGTCCTAGAGAAA 61.651 60.000 19.50 0.00 0.00 2.52
2904 3086 2.110967 CGGCCGTCGTCCTAGAGAA 61.111 63.158 19.50 0.00 0.00 2.87
2905 3087 2.513204 CGGCCGTCGTCCTAGAGA 60.513 66.667 19.50 0.00 0.00 3.10
2915 3097 1.025647 AGACTGTAGAGACGGCCGTC 61.026 60.000 43.92 43.92 44.86 4.79
2916 3098 0.608582 AAGACTGTAGAGACGGCCGT 60.609 55.000 34.89 34.89 35.07 5.68
2917 3099 0.099082 GAAGACTGTAGAGACGGCCG 59.901 60.000 26.86 26.86 35.07 6.13
2918 3100 1.465794 AGAAGACTGTAGAGACGGCC 58.534 55.000 0.00 0.00 35.07 6.13
2919 3101 2.750712 AGAAGAAGACTGTAGAGACGGC 59.249 50.000 0.00 0.00 35.07 5.68
2920 3102 5.379732 AAAGAAGAAGACTGTAGAGACGG 57.620 43.478 0.00 0.00 38.01 4.79
2921 3103 5.395642 GGAAAGAAGAAGACTGTAGAGACG 58.604 45.833 0.00 0.00 0.00 4.18
2922 3104 5.395642 CGGAAAGAAGAAGACTGTAGAGAC 58.604 45.833 0.00 0.00 0.00 3.36
2923 3105 4.459685 CCGGAAAGAAGAAGACTGTAGAGA 59.540 45.833 0.00 0.00 0.00 3.10
2924 3106 4.739195 CCGGAAAGAAGAAGACTGTAGAG 58.261 47.826 0.00 0.00 0.00 2.43
2925 3107 3.056749 GCCGGAAAGAAGAAGACTGTAGA 60.057 47.826 5.05 0.00 0.00 2.59
2926 3108 3.254892 GCCGGAAAGAAGAAGACTGTAG 58.745 50.000 5.05 0.00 0.00 2.74
2927 3109 2.028385 GGCCGGAAAGAAGAAGACTGTA 60.028 50.000 5.05 0.00 0.00 2.74
2928 3110 1.270893 GGCCGGAAAGAAGAAGACTGT 60.271 52.381 5.05 0.00 0.00 3.55
2929 3111 1.270839 TGGCCGGAAAGAAGAAGACTG 60.271 52.381 5.05 0.00 0.00 3.51
2930 3112 1.002544 CTGGCCGGAAAGAAGAAGACT 59.997 52.381 5.28 0.00 0.00 3.24
2931 3113 1.443802 CTGGCCGGAAAGAAGAAGAC 58.556 55.000 5.28 0.00 0.00 3.01
2932 3114 0.324943 CCTGGCCGGAAAGAAGAAGA 59.675 55.000 15.09 0.00 33.16 2.87
2933 3115 0.678048 CCCTGGCCGGAAAGAAGAAG 60.678 60.000 15.09 0.00 33.16 2.85
2934 3116 1.378762 CCCTGGCCGGAAAGAAGAA 59.621 57.895 15.09 0.00 33.16 2.52
2935 3117 3.077907 CCCTGGCCGGAAAGAAGA 58.922 61.111 15.09 0.00 33.16 2.87
2936 3118 2.751837 GCCCTGGCCGGAAAGAAG 60.752 66.667 15.09 0.00 34.56 2.85
2937 3119 2.840753 AAGCCCTGGCCGGAAAGAA 61.841 57.895 15.09 0.00 43.17 2.52
2938 3120 3.256960 AAGCCCTGGCCGGAAAGA 61.257 61.111 15.09 0.00 43.17 2.52
2939 3121 3.064324 CAAGCCCTGGCCGGAAAG 61.064 66.667 15.09 0.02 43.17 2.62
3006 3188 5.279306 CCTGTTGCCAGTAGTAGTTGTAGAA 60.279 44.000 0.00 0.00 36.95 2.10
3007 3189 4.219944 CCTGTTGCCAGTAGTAGTTGTAGA 59.780 45.833 0.00 0.00 36.95 2.59
3008 3190 4.021368 ACCTGTTGCCAGTAGTAGTTGTAG 60.021 45.833 0.00 0.00 36.95 2.74
3009 3191 3.899360 ACCTGTTGCCAGTAGTAGTTGTA 59.101 43.478 0.00 0.00 36.95 2.41
3010 3192 2.704065 ACCTGTTGCCAGTAGTAGTTGT 59.296 45.455 0.00 0.00 36.95 3.32
3011 3193 3.326747 GACCTGTTGCCAGTAGTAGTTG 58.673 50.000 0.00 0.00 36.95 3.16
3012 3194 2.029290 CGACCTGTTGCCAGTAGTAGTT 60.029 50.000 0.00 0.00 36.95 2.24
3013 3195 1.544691 CGACCTGTTGCCAGTAGTAGT 59.455 52.381 0.00 0.00 36.95 2.73
3014 3196 1.736032 GCGACCTGTTGCCAGTAGTAG 60.736 57.143 0.00 0.00 36.95 2.57
3015 3197 0.245539 GCGACCTGTTGCCAGTAGTA 59.754 55.000 0.00 0.00 36.95 1.82
3019 3201 2.281070 CAGCGACCTGTTGCCAGT 60.281 61.111 5.89 0.00 40.86 4.00
3042 3243 4.453819 GCTAATTACACATGAGGATGAGCC 59.546 45.833 0.00 0.00 33.36 4.70
3050 3251 5.348986 ACGTAGTGGCTAATTACACATGAG 58.651 41.667 0.00 0.00 42.51 2.90
3066 3267 6.253746 GGTCACAATACAGTAGTACGTAGTG 58.746 44.000 20.61 20.61 45.73 2.74
3069 3270 5.355071 CAGGGTCACAATACAGTAGTACGTA 59.645 44.000 0.00 0.00 31.96 3.57
3070 3271 4.157289 CAGGGTCACAATACAGTAGTACGT 59.843 45.833 0.00 0.00 31.96 3.57
3071 3272 4.397103 TCAGGGTCACAATACAGTAGTACG 59.603 45.833 0.00 0.00 31.96 3.67
3072 3273 5.163540 CCTCAGGGTCACAATACAGTAGTAC 60.164 48.000 0.00 0.00 31.96 2.73
3111 3312 6.092670 GAGTCAACACTAGAAAGCAATATGCA 59.907 38.462 5.01 0.00 38.41 3.96
3127 3328 8.029522 TCTAATTCTACACTGATGAGTCAACAC 58.970 37.037 0.00 0.00 33.05 3.32
3145 3346 8.897752 GCACTCATCTTGGTTATTTCTAATTCT 58.102 33.333 0.00 0.00 0.00 2.40
3146 3347 7.852945 CGCACTCATCTTGGTTATTTCTAATTC 59.147 37.037 0.00 0.00 0.00 2.17
3147 3348 7.336931 ACGCACTCATCTTGGTTATTTCTAATT 59.663 33.333 0.00 0.00 0.00 1.40
3148 3349 6.823689 ACGCACTCATCTTGGTTATTTCTAAT 59.176 34.615 0.00 0.00 0.00 1.73
3152 3353 4.154195 ACACGCACTCATCTTGGTTATTTC 59.846 41.667 0.00 0.00 0.00 2.17
3157 3358 1.967319 AACACGCACTCATCTTGGTT 58.033 45.000 0.00 0.00 0.00 3.67
3181 3385 1.517257 CGTCGGTCCTGCATGACTC 60.517 63.158 19.65 10.31 35.54 3.36
3227 3431 2.101249 AGCATTCAACCAACCAACTGTG 59.899 45.455 0.00 0.00 0.00 3.66
3248 3456 4.742201 GGAAGCACGGCAGCTCGA 62.742 66.667 9.87 0.00 45.89 4.04
3261 3469 1.283029 TCTGGATGAAGGCAAGGGAAG 59.717 52.381 0.00 0.00 0.00 3.46
3279 3488 6.349611 CGGTCAATCATTCTGGTTTTTGATCT 60.350 38.462 0.00 0.00 0.00 2.75
3288 3497 2.838202 AGTACCGGTCAATCATTCTGGT 59.162 45.455 12.40 0.00 42.55 4.00
3332 3541 7.363705 CCCTCATTTATGCCAAAATTACTGTGA 60.364 37.037 0.00 0.00 0.00 3.58
3333 3542 6.757947 CCCTCATTTATGCCAAAATTACTGTG 59.242 38.462 0.00 0.00 0.00 3.66
3334 3543 6.667414 TCCCTCATTTATGCCAAAATTACTGT 59.333 34.615 0.00 0.00 0.00 3.55
3335 3544 7.111247 TCCCTCATTTATGCCAAAATTACTG 57.889 36.000 0.00 0.00 0.00 2.74
3336 3545 7.732222 TTCCCTCATTTATGCCAAAATTACT 57.268 32.000 0.00 0.00 0.00 2.24
3337 3546 8.962884 AATTCCCTCATTTATGCCAAAATTAC 57.037 30.769 0.00 0.00 0.00 1.89
3338 3547 9.612066 GAAATTCCCTCATTTATGCCAAAATTA 57.388 29.630 0.00 0.00 0.00 1.40
3339 3548 7.557358 GGAAATTCCCTCATTTATGCCAAAATT 59.443 33.333 0.00 0.00 0.00 1.82
3365 3607 7.920151 CCTAGATCTCAGAGTTGAATTACTGTG 59.080 40.741 0.00 0.16 39.92 3.66
3379 3621 3.054287 ACCGAACAGTCCTAGATCTCAGA 60.054 47.826 0.00 0.00 0.00 3.27
3409 3651 4.500716 CCAAATGGAGTAAAGGCGTTTGTT 60.501 41.667 14.42 2.44 37.39 2.83
3410 3652 3.005367 CCAAATGGAGTAAAGGCGTTTGT 59.995 43.478 14.42 1.66 37.39 2.83
3411 3653 3.254657 TCCAAATGGAGTAAAGGCGTTTG 59.745 43.478 14.42 0.00 39.78 2.93
3412 3654 3.492337 TCCAAATGGAGTAAAGGCGTTT 58.508 40.909 9.63 9.63 39.78 3.60
3450 3692 2.415090 GCTTCAGTGCGAATTGCTTCAT 60.415 45.455 0.00 0.00 46.63 2.57
3462 3704 3.691118 TCTTGTATTGATGGCTTCAGTGC 59.309 43.478 8.39 7.64 35.27 4.40
3470 3712 6.485171 ACCCCTATTATCTTGTATTGATGGC 58.515 40.000 0.00 0.00 0.00 4.40
3504 3749 4.744795 AGCTAATGGTCTGTTACTGGAG 57.255 45.455 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.