Multiple sequence alignment - TraesCS2A01G551400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G551400 chr2A 100.000 4337 0 0 1 4337 758274329 758278665 0.000000e+00 8010.0
1 TraesCS2A01G551400 chr2B 94.298 3525 171 16 726 4238 770063407 770066913 0.000000e+00 5369.0
2 TraesCS2A01G551400 chr2B 87.097 93 11 1 726 817 152501241 152501333 2.130000e-18 104.0
3 TraesCS2A01G551400 chr2D 93.794 3561 148 30 450 3974 627815348 627818871 0.000000e+00 5284.0
4 TraesCS2A01G551400 chr2D 91.545 343 16 5 3971 4312 627819018 627819348 1.100000e-125 460.0
5 TraesCS2A01G551400 chr2D 93.248 311 18 3 1 309 627626059 627625750 5.110000e-124 455.0
6 TraesCS2A01G551400 chr2D 94.681 94 5 0 361 454 627815153 627815246 3.500000e-31 147.0
7 TraesCS2A01G551400 chr2D 85.366 82 7 4 737 818 100949608 100949532 3.600000e-11 80.5
8 TraesCS2A01G551400 chr5B 80.612 490 68 14 3377 3854 586711801 586712275 1.920000e-93 353.0
9 TraesCS2A01G551400 chr7A 88.889 135 11 2 274 404 48778584 48778450 3.470000e-36 163.0
10 TraesCS2A01G551400 chr7A 80.645 93 13 4 726 818 342009336 342009249 2.800000e-07 67.6
11 TraesCS2A01G551400 chr6D 82.482 137 17 3 726 862 386179295 386179424 3.540000e-21 113.0
12 TraesCS2A01G551400 chr1A 80.469 128 15 8 739 865 394878202 394878084 5.970000e-14 89.8
13 TraesCS2A01G551400 chr7D 88.525 61 4 3 759 818 109301579 109301521 2.160000e-08 71.3
14 TraesCS2A01G551400 chr4D 92.500 40 3 0 779 818 507756149 507756188 1.680000e-04 58.4
15 TraesCS2A01G551400 chr1D 94.595 37 2 0 790 826 490577946 490577982 1.680000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G551400 chr2A 758274329 758278665 4336 False 8010.000000 8010 100.000 1 4337 1 chr2A.!!$F1 4336
1 TraesCS2A01G551400 chr2B 770063407 770066913 3506 False 5369.000000 5369 94.298 726 4238 1 chr2B.!!$F2 3512
2 TraesCS2A01G551400 chr2D 627815153 627819348 4195 False 1963.666667 5284 93.340 361 4312 3 chr2D.!!$F1 3951

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.038159 AAAGAGGTTCTCGCCACTCG 60.038 55.0 0.0 0.0 35.36 4.18 F
996 1140 0.106149 GCGAATCCCCACTTCCGTAT 59.894 55.0 0.0 0.0 0.00 3.06 F
1575 1725 0.323542 TCTCCTGGAACTCCCTCGTC 60.324 60.0 0.0 0.0 35.38 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 2256 0.610687 AGGCTTTCTCCAGAGAACCG 59.389 55.0 9.6 5.72 46.13 4.44 R
2265 2415 5.014755 TGGAAGTACATTCACCAGGGTTATT 59.985 40.0 0.0 0.00 39.91 1.40 R
3532 3682 0.536724 ATACAGTGCAGCCATCGACA 59.463 50.0 0.0 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.768253 CCAAGAAAATTGGCCTTCCC 57.232 50.000 3.32 0.00 32.18 3.97
26 27 1.977129 CCAAGAAAATTGGCCTTCCCA 59.023 47.619 3.32 0.00 43.51 4.37
27 28 2.289631 CCAAGAAAATTGGCCTTCCCAC 60.290 50.000 3.32 0.00 45.34 4.61
28 29 2.368221 CAAGAAAATTGGCCTTCCCACA 59.632 45.455 3.32 0.00 45.34 4.17
29 30 2.688477 AGAAAATTGGCCTTCCCACAA 58.312 42.857 3.32 0.00 45.34 3.33
30 31 3.044894 AGAAAATTGGCCTTCCCACAAA 58.955 40.909 3.32 0.00 45.34 2.83
31 32 3.457749 AGAAAATTGGCCTTCCCACAAAA 59.542 39.130 3.32 0.00 45.34 2.44
32 33 3.490439 AAATTGGCCTTCCCACAAAAG 57.510 42.857 3.32 0.00 45.34 2.27
33 34 2.397044 ATTGGCCTTCCCACAAAAGA 57.603 45.000 3.32 0.00 45.34 2.52
34 35 2.397044 TTGGCCTTCCCACAAAAGAT 57.603 45.000 3.32 0.00 45.34 2.40
35 36 3.534357 TTGGCCTTCCCACAAAAGATA 57.466 42.857 3.32 0.00 45.34 1.98
36 37 3.534357 TGGCCTTCCCACAAAAGATAA 57.466 42.857 3.32 0.00 39.18 1.75
37 38 3.850752 TGGCCTTCCCACAAAAGATAAA 58.149 40.909 3.32 0.00 39.18 1.40
38 39 4.424842 TGGCCTTCCCACAAAAGATAAAT 58.575 39.130 3.32 0.00 39.18 1.40
39 40 5.584913 TGGCCTTCCCACAAAAGATAAATA 58.415 37.500 3.32 0.00 39.18 1.40
40 41 6.019748 TGGCCTTCCCACAAAAGATAAATAA 58.980 36.000 3.32 0.00 39.18 1.40
41 42 6.154363 TGGCCTTCCCACAAAAGATAAATAAG 59.846 38.462 3.32 0.00 39.18 1.73
42 43 6.379988 GGCCTTCCCACAAAAGATAAATAAGA 59.620 38.462 0.00 0.00 0.00 2.10
43 44 7.093509 GGCCTTCCCACAAAAGATAAATAAGAA 60.094 37.037 0.00 0.00 0.00 2.52
44 45 8.478066 GCCTTCCCACAAAAGATAAATAAGAAT 58.522 33.333 0.00 0.00 0.00 2.40
57 58 9.658799 AGATAAATAAGAATATGGGTCATCGTG 57.341 33.333 0.00 0.00 0.00 4.35
58 59 9.436957 GATAAATAAGAATATGGGTCATCGTGT 57.563 33.333 0.00 0.00 0.00 4.49
61 62 9.793259 AAATAAGAATATGGGTCATCGTGTATT 57.207 29.630 0.00 0.00 0.00 1.89
62 63 9.793259 AATAAGAATATGGGTCATCGTGTATTT 57.207 29.630 0.00 0.00 0.00 1.40
65 66 9.621629 AAGAATATGGGTCATCGTGTATTTAAA 57.378 29.630 0.00 0.00 0.00 1.52
66 67 9.793259 AGAATATGGGTCATCGTGTATTTAAAT 57.207 29.630 5.89 5.89 0.00 1.40
70 71 7.090953 TGGGTCATCGTGTATTTAAATTTCC 57.909 36.000 5.91 0.00 0.00 3.13
71 72 6.887545 TGGGTCATCGTGTATTTAAATTTCCT 59.112 34.615 5.91 0.00 0.00 3.36
72 73 7.394923 TGGGTCATCGTGTATTTAAATTTCCTT 59.605 33.333 5.91 0.00 0.00 3.36
73 74 7.700656 GGGTCATCGTGTATTTAAATTTCCTTG 59.299 37.037 5.91 0.00 0.00 3.61
74 75 7.220108 GGTCATCGTGTATTTAAATTTCCTTGC 59.780 37.037 5.91 0.00 0.00 4.01
75 76 7.753132 GTCATCGTGTATTTAAATTTCCTTGCA 59.247 33.333 5.91 0.00 0.00 4.08
76 77 7.967854 TCATCGTGTATTTAAATTTCCTTGCAG 59.032 33.333 5.91 0.00 0.00 4.41
77 78 7.209471 TCGTGTATTTAAATTTCCTTGCAGT 57.791 32.000 5.91 0.00 0.00 4.40
78 79 7.653647 TCGTGTATTTAAATTTCCTTGCAGTT 58.346 30.769 5.91 0.00 0.00 3.16
79 80 8.138712 TCGTGTATTTAAATTTCCTTGCAGTTT 58.861 29.630 5.91 0.00 0.00 2.66
80 81 9.400638 CGTGTATTTAAATTTCCTTGCAGTTTA 57.599 29.630 5.91 0.00 0.00 2.01
93 94 9.474920 TTCCTTGCAGTTTATTAGTTTCATTTG 57.525 29.630 0.00 0.00 0.00 2.32
94 95 8.637986 TCCTTGCAGTTTATTAGTTTCATTTGT 58.362 29.630 0.00 0.00 0.00 2.83
95 96 9.260002 CCTTGCAGTTTATTAGTTTCATTTGTT 57.740 29.630 0.00 0.00 0.00 2.83
98 99 9.039870 TGCAGTTTATTAGTTTCATTTGTTTGG 57.960 29.630 0.00 0.00 0.00 3.28
99 100 9.040939 GCAGTTTATTAGTTTCATTTGTTTGGT 57.959 29.630 0.00 0.00 0.00 3.67
105 106 7.556733 TTAGTTTCATTTGTTTGGTACGAGT 57.443 32.000 0.00 0.00 0.00 4.18
106 107 6.445357 AGTTTCATTTGTTTGGTACGAGTT 57.555 33.333 0.00 0.00 0.00 3.01
107 108 6.492254 AGTTTCATTTGTTTGGTACGAGTTC 58.508 36.000 0.00 0.00 0.00 3.01
108 109 6.094325 AGTTTCATTTGTTTGGTACGAGTTCA 59.906 34.615 0.00 0.00 0.00 3.18
109 110 6.438259 TTCATTTGTTTGGTACGAGTTCAA 57.562 33.333 0.00 0.00 0.00 2.69
110 111 6.055231 TCATTTGTTTGGTACGAGTTCAAG 57.945 37.500 0.00 0.00 0.00 3.02
111 112 5.818336 TCATTTGTTTGGTACGAGTTCAAGA 59.182 36.000 0.00 0.00 0.00 3.02
112 113 6.316640 TCATTTGTTTGGTACGAGTTCAAGAA 59.683 34.615 0.00 0.00 0.00 2.52
113 114 6.497785 TTTGTTTGGTACGAGTTCAAGAAA 57.502 33.333 0.00 0.00 0.00 2.52
114 115 6.497785 TTGTTTGGTACGAGTTCAAGAAAA 57.502 33.333 0.00 0.00 0.00 2.29
115 116 6.497785 TGTTTGGTACGAGTTCAAGAAAAA 57.502 33.333 0.00 0.00 0.00 1.94
116 117 6.548171 TGTTTGGTACGAGTTCAAGAAAAAG 58.452 36.000 0.00 0.00 0.00 2.27
117 118 5.744666 TTGGTACGAGTTCAAGAAAAAGG 57.255 39.130 0.00 0.00 0.00 3.11
118 119 4.773013 TGGTACGAGTTCAAGAAAAAGGT 58.227 39.130 0.00 0.00 0.00 3.50
119 120 4.812626 TGGTACGAGTTCAAGAAAAAGGTC 59.187 41.667 0.00 0.00 0.00 3.85
120 121 4.812626 GGTACGAGTTCAAGAAAAAGGTCA 59.187 41.667 0.00 0.00 0.00 4.02
121 122 5.469084 GGTACGAGTTCAAGAAAAAGGTCAT 59.531 40.000 0.00 0.00 0.00 3.06
122 123 6.017357 GGTACGAGTTCAAGAAAAAGGTCATT 60.017 38.462 0.00 0.00 0.00 2.57
123 124 5.821204 ACGAGTTCAAGAAAAAGGTCATTG 58.179 37.500 0.00 0.00 0.00 2.82
124 125 5.357032 ACGAGTTCAAGAAAAAGGTCATTGT 59.643 36.000 0.00 0.00 0.00 2.71
125 126 5.682862 CGAGTTCAAGAAAAAGGTCATTGTG 59.317 40.000 0.00 0.00 0.00 3.33
126 127 6.530019 AGTTCAAGAAAAAGGTCATTGTGT 57.470 33.333 0.00 0.00 0.00 3.72
127 128 6.935167 AGTTCAAGAAAAAGGTCATTGTGTT 58.065 32.000 0.00 0.00 0.00 3.32
128 129 7.386059 AGTTCAAGAAAAAGGTCATTGTGTTT 58.614 30.769 0.00 0.00 0.00 2.83
129 130 7.877612 AGTTCAAGAAAAAGGTCATTGTGTTTT 59.122 29.630 0.00 0.00 0.00 2.43
130 131 8.503196 GTTCAAGAAAAAGGTCATTGTGTTTTT 58.497 29.630 0.00 0.00 35.36 1.94
157 158 8.581253 AGGGAAGGTAATCATGTTTTAGAAAG 57.419 34.615 0.00 0.00 0.00 2.62
158 159 7.122799 AGGGAAGGTAATCATGTTTTAGAAAGC 59.877 37.037 0.00 0.00 0.00 3.51
159 160 7.093945 GGGAAGGTAATCATGTTTTAGAAAGCA 60.094 37.037 0.00 0.00 33.67 3.91
160 161 8.303876 GGAAGGTAATCATGTTTTAGAAAGCAA 58.696 33.333 0.00 0.00 32.89 3.91
161 162 9.860898 GAAGGTAATCATGTTTTAGAAAGCAAT 57.139 29.630 0.00 0.00 32.89 3.56
219 220 6.936968 AGTATAACTTGTCCTTCTTCCAGT 57.063 37.500 0.00 0.00 0.00 4.00
220 221 6.937392 AGTATAACTTGTCCTTCTTCCAGTC 58.063 40.000 0.00 0.00 0.00 3.51
221 222 5.825593 ATAACTTGTCCTTCTTCCAGTCA 57.174 39.130 0.00 0.00 0.00 3.41
222 223 3.477210 ACTTGTCCTTCTTCCAGTCAC 57.523 47.619 0.00 0.00 0.00 3.67
223 224 2.104963 ACTTGTCCTTCTTCCAGTCACC 59.895 50.000 0.00 0.00 0.00 4.02
224 225 1.056660 TGTCCTTCTTCCAGTCACCC 58.943 55.000 0.00 0.00 0.00 4.61
225 226 1.056660 GTCCTTCTTCCAGTCACCCA 58.943 55.000 0.00 0.00 0.00 4.51
226 227 1.420138 GTCCTTCTTCCAGTCACCCAA 59.580 52.381 0.00 0.00 0.00 4.12
227 228 1.699634 TCCTTCTTCCAGTCACCCAAG 59.300 52.381 0.00 0.00 0.00 3.61
228 229 1.528129 CTTCTTCCAGTCACCCAAGC 58.472 55.000 0.00 0.00 0.00 4.01
229 230 0.843309 TTCTTCCAGTCACCCAAGCA 59.157 50.000 0.00 0.00 0.00 3.91
230 231 0.843309 TCTTCCAGTCACCCAAGCAA 59.157 50.000 0.00 0.00 0.00 3.91
231 232 1.425066 TCTTCCAGTCACCCAAGCAAT 59.575 47.619 0.00 0.00 0.00 3.56
232 233 1.542915 CTTCCAGTCACCCAAGCAATG 59.457 52.381 0.00 0.00 0.00 2.82
233 234 0.895100 TCCAGTCACCCAAGCAATGC 60.895 55.000 0.00 0.00 0.00 3.56
234 235 1.180456 CCAGTCACCCAAGCAATGCA 61.180 55.000 8.35 0.00 0.00 3.96
235 236 0.892755 CAGTCACCCAAGCAATGCAT 59.107 50.000 8.35 0.00 0.00 3.96
236 237 1.135199 CAGTCACCCAAGCAATGCATC 60.135 52.381 8.35 0.00 0.00 3.91
237 238 1.180029 GTCACCCAAGCAATGCATCT 58.820 50.000 8.35 0.00 0.00 2.90
238 239 2.025981 AGTCACCCAAGCAATGCATCTA 60.026 45.455 8.35 0.00 0.00 1.98
239 240 2.754552 GTCACCCAAGCAATGCATCTAA 59.245 45.455 8.35 0.00 0.00 2.10
240 241 3.018856 TCACCCAAGCAATGCATCTAAG 58.981 45.455 8.35 0.00 0.00 2.18
241 242 3.018856 CACCCAAGCAATGCATCTAAGA 58.981 45.455 8.35 0.00 0.00 2.10
242 243 3.444742 CACCCAAGCAATGCATCTAAGAA 59.555 43.478 8.35 0.00 0.00 2.52
243 244 4.082081 CACCCAAGCAATGCATCTAAGAAA 60.082 41.667 8.35 0.00 0.00 2.52
244 245 4.713321 ACCCAAGCAATGCATCTAAGAAAT 59.287 37.500 8.35 0.00 0.00 2.17
245 246 5.893255 ACCCAAGCAATGCATCTAAGAAATA 59.107 36.000 8.35 0.00 0.00 1.40
246 247 6.380846 ACCCAAGCAATGCATCTAAGAAATAA 59.619 34.615 8.35 0.00 0.00 1.40
247 248 7.093377 ACCCAAGCAATGCATCTAAGAAATAAA 60.093 33.333 8.35 0.00 0.00 1.40
248 249 7.437267 CCCAAGCAATGCATCTAAGAAATAAAG 59.563 37.037 8.35 0.00 0.00 1.85
249 250 8.192774 CCAAGCAATGCATCTAAGAAATAAAGA 58.807 33.333 8.35 0.00 0.00 2.52
250 251 9.234384 CAAGCAATGCATCTAAGAAATAAAGAG 57.766 33.333 8.35 0.00 0.00 2.85
251 252 7.938715 AGCAATGCATCTAAGAAATAAAGAGG 58.061 34.615 8.35 0.00 0.00 3.69
252 253 7.559170 AGCAATGCATCTAAGAAATAAAGAGGT 59.441 33.333 8.35 0.00 0.00 3.85
253 254 8.193438 GCAATGCATCTAAGAAATAAAGAGGTT 58.807 33.333 0.00 0.00 0.00 3.50
254 255 9.727627 CAATGCATCTAAGAAATAAAGAGGTTC 57.272 33.333 0.00 0.00 0.00 3.62
255 256 9.692325 AATGCATCTAAGAAATAAAGAGGTTCT 57.308 29.630 0.00 0.00 33.01 3.01
256 257 8.723942 TGCATCTAAGAAATAAAGAGGTTCTC 57.276 34.615 0.00 0.00 31.26 2.87
257 258 7.492669 TGCATCTAAGAAATAAAGAGGTTCTCG 59.507 37.037 0.00 0.00 35.36 4.04
258 259 7.517575 GCATCTAAGAAATAAAGAGGTTCTCGC 60.518 40.741 0.00 0.00 35.36 5.03
259 260 6.338937 TCTAAGAAATAAAGAGGTTCTCGCC 58.661 40.000 0.00 0.00 35.36 5.54
260 261 4.553330 AGAAATAAAGAGGTTCTCGCCA 57.447 40.909 0.00 0.00 35.36 5.69
261 262 4.254492 AGAAATAAAGAGGTTCTCGCCAC 58.746 43.478 0.00 0.00 35.36 5.01
262 263 3.983044 AATAAAGAGGTTCTCGCCACT 57.017 42.857 0.00 0.00 35.36 4.00
263 264 3.528597 ATAAAGAGGTTCTCGCCACTC 57.471 47.619 0.00 0.00 35.36 3.51
264 265 0.038159 AAAGAGGTTCTCGCCACTCG 60.038 55.000 0.00 0.00 35.36 4.18
265 266 1.179814 AAGAGGTTCTCGCCACTCGT 61.180 55.000 0.00 0.00 39.67 4.18
266 267 0.322277 AGAGGTTCTCGCCACTCGTA 60.322 55.000 0.00 0.00 39.67 3.43
267 268 0.739561 GAGGTTCTCGCCACTCGTAT 59.260 55.000 0.00 0.00 39.67 3.06
268 269 0.456221 AGGTTCTCGCCACTCGTATG 59.544 55.000 0.00 0.00 39.67 2.39
269 270 0.172803 GGTTCTCGCCACTCGTATGT 59.827 55.000 0.00 0.00 39.67 2.29
270 271 1.402968 GGTTCTCGCCACTCGTATGTA 59.597 52.381 0.00 0.00 39.67 2.29
271 272 2.541178 GGTTCTCGCCACTCGTATGTAG 60.541 54.545 0.00 0.00 39.67 2.74
272 273 0.661552 TCTCGCCACTCGTATGTAGC 59.338 55.000 0.00 0.00 39.67 3.58
273 274 0.663688 CTCGCCACTCGTATGTAGCT 59.336 55.000 0.00 0.00 39.67 3.32
274 275 1.871676 CTCGCCACTCGTATGTAGCTA 59.128 52.381 0.00 0.00 39.67 3.32
275 276 1.871676 TCGCCACTCGTATGTAGCTAG 59.128 52.381 0.00 0.00 39.67 3.42
276 277 1.602851 CGCCACTCGTATGTAGCTAGT 59.397 52.381 0.00 0.00 0.00 2.57
277 278 2.033049 CGCCACTCGTATGTAGCTAGTT 59.967 50.000 0.00 0.00 0.00 2.24
278 279 3.630101 GCCACTCGTATGTAGCTAGTTC 58.370 50.000 0.00 0.00 0.00 3.01
279 280 3.066342 GCCACTCGTATGTAGCTAGTTCA 59.934 47.826 0.00 0.00 0.00 3.18
280 281 4.790123 GCCACTCGTATGTAGCTAGTTCAG 60.790 50.000 0.00 0.00 0.00 3.02
281 282 4.575236 CCACTCGTATGTAGCTAGTTCAGA 59.425 45.833 0.00 0.00 0.00 3.27
282 283 5.503498 CACTCGTATGTAGCTAGTTCAGAC 58.497 45.833 0.00 0.00 0.00 3.51
283 284 5.294799 CACTCGTATGTAGCTAGTTCAGACT 59.705 44.000 0.00 0.00 39.97 3.24
284 285 5.524646 ACTCGTATGTAGCTAGTTCAGACTC 59.475 44.000 0.00 0.00 37.33 3.36
285 286 4.815308 TCGTATGTAGCTAGTTCAGACTCC 59.185 45.833 0.00 0.00 37.33 3.85
286 287 4.575236 CGTATGTAGCTAGTTCAGACTCCA 59.425 45.833 0.00 0.00 37.33 3.86
287 288 5.066117 CGTATGTAGCTAGTTCAGACTCCAA 59.934 44.000 0.00 0.00 37.33 3.53
288 289 6.238786 CGTATGTAGCTAGTTCAGACTCCAAT 60.239 42.308 0.00 0.00 37.33 3.16
289 290 5.330455 TGTAGCTAGTTCAGACTCCAATG 57.670 43.478 0.00 0.00 37.33 2.82
290 291 3.902881 AGCTAGTTCAGACTCCAATGG 57.097 47.619 0.00 0.00 37.33 3.16
291 292 3.445008 AGCTAGTTCAGACTCCAATGGA 58.555 45.455 0.48 0.48 37.33 3.41
302 303 2.118313 TCCAATGGAGATGCACACTG 57.882 50.000 0.00 0.00 0.00 3.66
303 304 1.352017 TCCAATGGAGATGCACACTGT 59.648 47.619 0.00 0.00 0.00 3.55
304 305 1.741706 CCAATGGAGATGCACACTGTC 59.258 52.381 0.00 0.00 0.00 3.51
305 306 2.617276 CCAATGGAGATGCACACTGTCT 60.617 50.000 0.00 0.00 0.00 3.41
306 307 2.676839 CAATGGAGATGCACACTGTCTC 59.323 50.000 5.82 5.82 38.08 3.36
307 308 1.341080 TGGAGATGCACACTGTCTCA 58.659 50.000 14.51 0.98 40.04 3.27
308 309 1.274447 TGGAGATGCACACTGTCTCAG 59.726 52.381 14.51 0.00 40.04 3.35
309 310 1.274728 GGAGATGCACACTGTCTCAGT 59.725 52.381 14.51 0.00 46.51 3.41
310 311 2.289320 GGAGATGCACACTGTCTCAGTT 60.289 50.000 14.51 0.00 42.59 3.16
311 312 2.992543 GAGATGCACACTGTCTCAGTTC 59.007 50.000 8.98 0.00 42.59 3.01
312 313 1.723542 GATGCACACTGTCTCAGTTCG 59.276 52.381 0.00 0.00 42.59 3.95
313 314 0.875908 TGCACACTGTCTCAGTTCGC 60.876 55.000 11.13 11.13 42.59 4.70
314 315 1.880601 GCACACTGTCTCAGTTCGCG 61.881 60.000 0.00 0.00 42.59 5.87
315 316 1.007271 ACACTGTCTCAGTTCGCGG 60.007 57.895 6.13 0.00 42.59 6.46
316 317 2.049063 ACTGTCTCAGTTCGCGGC 60.049 61.111 6.13 0.00 42.59 6.53
317 318 3.175240 CTGTCTCAGTTCGCGGCG 61.175 66.667 17.70 17.70 0.00 6.46
318 319 4.717629 TGTCTCAGTTCGCGGCGG 62.718 66.667 23.46 6.26 0.00 6.13
337 338 3.907894 GGGACGAGTAGATGATCACTC 57.092 52.381 0.00 12.16 38.24 3.51
338 339 2.554893 GGGACGAGTAGATGATCACTCC 59.445 54.545 14.81 6.44 38.35 3.85
339 340 2.554893 GGACGAGTAGATGATCACTCCC 59.445 54.545 14.81 9.96 38.35 4.30
340 341 2.554893 GACGAGTAGATGATCACTCCCC 59.445 54.545 14.81 7.16 38.35 4.81
341 342 2.175931 ACGAGTAGATGATCACTCCCCT 59.824 50.000 14.81 0.00 38.35 4.79
342 343 3.394940 ACGAGTAGATGATCACTCCCCTA 59.605 47.826 14.81 0.00 38.35 3.53
343 344 4.043561 ACGAGTAGATGATCACTCCCCTAT 59.956 45.833 14.81 0.00 38.35 2.57
344 345 5.251005 ACGAGTAGATGATCACTCCCCTATA 59.749 44.000 14.81 0.00 38.35 1.31
345 346 5.587043 CGAGTAGATGATCACTCCCCTATAC 59.413 48.000 14.81 0.00 38.35 1.47
346 347 5.502079 AGTAGATGATCACTCCCCTATACG 58.498 45.833 0.00 0.00 0.00 3.06
347 348 4.390129 AGATGATCACTCCCCTATACGT 57.610 45.455 0.00 0.00 0.00 3.57
348 349 5.516059 AGATGATCACTCCCCTATACGTA 57.484 43.478 0.00 0.00 0.00 3.57
349 350 5.502079 AGATGATCACTCCCCTATACGTAG 58.498 45.833 0.00 0.00 0.00 3.51
350 351 4.030314 TGATCACTCCCCTATACGTAGG 57.970 50.000 0.08 0.00 46.03 3.18
360 361 3.577649 CTATACGTAGGACCATGCCAG 57.422 52.381 0.08 0.00 0.00 4.85
361 362 0.393077 ATACGTAGGACCATGCCAGC 59.607 55.000 0.08 0.00 0.00 4.85
362 363 1.682451 TACGTAGGACCATGCCAGCC 61.682 60.000 0.00 0.00 0.00 4.85
363 364 2.193248 GTAGGACCATGCCAGCCC 59.807 66.667 0.00 0.00 0.00 5.19
364 365 3.096495 TAGGACCATGCCAGCCCC 61.096 66.667 0.00 0.00 0.00 5.80
365 366 3.658346 TAGGACCATGCCAGCCCCT 62.658 63.158 0.00 0.00 0.00 4.79
366 367 4.828296 GGACCATGCCAGCCCCTG 62.828 72.222 0.00 0.00 0.00 4.45
367 368 3.731728 GACCATGCCAGCCCCTGA 61.732 66.667 0.00 0.00 32.44 3.86
376 377 1.612726 GCCAGCCCCTGATGTATCATC 60.613 57.143 3.16 3.16 36.02 2.92
386 387 7.385267 CCCCTGATGTATCATCTTTCTCTAAG 58.615 42.308 10.40 0.00 36.02 2.18
448 556 1.037493 ATATGGGCAAGCTCGTCGTA 58.963 50.000 0.00 0.00 0.00 3.43
452 560 1.084289 GGGCAAGCTCGTCGTATTTT 58.916 50.000 0.00 0.00 0.00 1.82
478 586 3.323403 AGAAGATCCCCATGAGAATCGAC 59.677 47.826 0.00 0.00 38.61 4.20
486 594 2.159240 CCATGAGAATCGACCGACTTCA 60.159 50.000 0.00 9.51 38.61 3.02
489 597 4.288670 TGAGAATCGACCGACTTCATAC 57.711 45.455 13.02 7.61 38.61 2.39
502 610 3.883489 GACTTCATACCAATACCAAGGCC 59.117 47.826 0.00 0.00 0.00 5.19
520 628 2.124695 GGGAAGACATGCCCGTCC 60.125 66.667 10.72 10.72 36.52 4.79
521 629 2.124695 GGAAGACATGCCCGTCCC 60.125 66.667 8.74 0.00 36.52 4.46
522 630 2.124695 GAAGACATGCCCGTCCCC 60.125 66.667 0.00 0.00 36.52 4.81
523 631 3.699134 GAAGACATGCCCGTCCCCC 62.699 68.421 0.00 0.00 36.52 5.40
549 657 4.983671 CCCCCTTGTTTAACATAAGAGC 57.016 45.455 0.00 0.00 0.00 4.09
570 678 1.957877 GGGAATGGAGAGACGGTAGAG 59.042 57.143 0.00 0.00 0.00 2.43
574 682 4.261825 GGAATGGAGAGACGGTAGAGATTG 60.262 50.000 0.00 0.00 0.00 2.67
588 696 2.168728 AGAGATTGCCGGTAGAAACTCC 59.831 50.000 1.90 0.00 0.00 3.85
591 699 1.053424 TTGCCGGTAGAAACTCCTGT 58.947 50.000 1.90 0.00 0.00 4.00
599 707 1.705873 AGAAACTCCTGTCGGTGAGT 58.294 50.000 0.00 0.00 43.47 3.41
605 713 0.179001 TCCTGTCGGTGAGTGAGTCA 60.179 55.000 0.00 0.00 0.00 3.41
606 714 0.891373 CCTGTCGGTGAGTGAGTCAT 59.109 55.000 0.00 0.00 37.56 3.06
617 725 3.190744 TGAGTGAGTCATTGTCGGAGTAC 59.809 47.826 0.00 0.00 0.00 2.73
624 732 6.588756 TGAGTCATTGTCGGAGTACAATAAAC 59.411 38.462 2.17 4.70 45.92 2.01
625 733 5.873164 AGTCATTGTCGGAGTACAATAAACC 59.127 40.000 2.17 0.00 45.92 3.27
631 751 4.800471 GTCGGAGTACAATAAACCCTAACG 59.200 45.833 0.00 0.00 0.00 3.18
632 752 4.704540 TCGGAGTACAATAAACCCTAACGA 59.295 41.667 0.00 0.00 0.00 3.85
671 797 8.694540 TGCTGCCATTTTATTCTACAAATATGT 58.305 29.630 0.00 0.00 43.74 2.29
694 820 8.357290 TGTACTATATCTACGGCACCAATATT 57.643 34.615 0.00 0.00 0.00 1.28
695 821 8.464404 TGTACTATATCTACGGCACCAATATTC 58.536 37.037 0.00 0.00 0.00 1.75
696 822 6.875076 ACTATATCTACGGCACCAATATTCC 58.125 40.000 0.00 0.00 0.00 3.01
697 823 2.922740 TCTACGGCACCAATATTCCC 57.077 50.000 0.00 0.00 0.00 3.97
698 824 2.404559 TCTACGGCACCAATATTCCCT 58.595 47.619 0.00 0.00 0.00 4.20
699 825 2.367567 TCTACGGCACCAATATTCCCTC 59.632 50.000 0.00 0.00 0.00 4.30
700 826 0.182775 ACGGCACCAATATTCCCTCC 59.817 55.000 0.00 0.00 0.00 4.30
701 827 0.182537 CGGCACCAATATTCCCTCCA 59.817 55.000 0.00 0.00 0.00 3.86
702 828 1.202927 CGGCACCAATATTCCCTCCAT 60.203 52.381 0.00 0.00 0.00 3.41
703 829 2.752829 CGGCACCAATATTCCCTCCATT 60.753 50.000 0.00 0.00 0.00 3.16
704 830 2.893489 GGCACCAATATTCCCTCCATTC 59.107 50.000 0.00 0.00 0.00 2.67
705 831 3.565307 GCACCAATATTCCCTCCATTCA 58.435 45.455 0.00 0.00 0.00 2.57
706 832 3.319122 GCACCAATATTCCCTCCATTCAC 59.681 47.826 0.00 0.00 0.00 3.18
707 833 4.796606 CACCAATATTCCCTCCATTCACT 58.203 43.478 0.00 0.00 0.00 3.41
708 834 5.203528 CACCAATATTCCCTCCATTCACTT 58.796 41.667 0.00 0.00 0.00 3.16
709 835 6.364701 CACCAATATTCCCTCCATTCACTTA 58.635 40.000 0.00 0.00 0.00 2.24
710 836 6.833416 CACCAATATTCCCTCCATTCACTTAA 59.167 38.462 0.00 0.00 0.00 1.85
711 837 7.506938 CACCAATATTCCCTCCATTCACTTAAT 59.493 37.037 0.00 0.00 0.00 1.40
712 838 7.725844 ACCAATATTCCCTCCATTCACTTAATC 59.274 37.037 0.00 0.00 0.00 1.75
713 839 7.725397 CCAATATTCCCTCCATTCACTTAATCA 59.275 37.037 0.00 0.00 0.00 2.57
714 840 9.135189 CAATATTCCCTCCATTCACTTAATCAA 57.865 33.333 0.00 0.00 0.00 2.57
715 841 9.713684 AATATTCCCTCCATTCACTTAATCAAA 57.286 29.630 0.00 0.00 0.00 2.69
716 842 9.713684 ATATTCCCTCCATTCACTTAATCAAAA 57.286 29.630 0.00 0.00 0.00 2.44
717 843 7.847711 TTCCCTCCATTCACTTAATCAAAAA 57.152 32.000 0.00 0.00 0.00 1.94
750 876 6.716628 TCCCTCCATTCACAAATATTAGATGC 59.283 38.462 0.00 0.00 0.00 3.91
809 935 7.382898 ACACCTTTTAATGTGTTTGTTCACTT 58.617 30.769 0.00 0.00 42.82 3.16
820 946 7.821652 TGTGTTTGTTCACTTATTTCAGTTCA 58.178 30.769 0.00 0.00 38.90 3.18
877 1003 2.820728 TCTTGTACTCCCTCCGATCA 57.179 50.000 0.00 0.00 0.00 2.92
891 1018 6.712095 TCCCTCCGATCAATAAATCATCAAAG 59.288 38.462 0.00 0.00 0.00 2.77
921 1063 2.829023 TGGAGGGAGTACTTTGGTAGG 58.171 52.381 0.00 0.00 0.00 3.18
963 1107 9.671279 AAAATGGTCCATTTCTTATTTGAATCC 57.329 29.630 26.51 0.00 42.32 3.01
973 1117 2.143876 ATTTGAATCCCCGGAACAGG 57.856 50.000 0.73 0.00 0.00 4.00
993 1137 1.521681 GAGCGAATCCCCACTTCCG 60.522 63.158 0.00 0.00 0.00 4.30
994 1138 2.240162 GAGCGAATCCCCACTTCCGT 62.240 60.000 0.00 0.00 0.00 4.69
995 1139 0.974010 AGCGAATCCCCACTTCCGTA 60.974 55.000 0.00 0.00 0.00 4.02
996 1140 0.106149 GCGAATCCCCACTTCCGTAT 59.894 55.000 0.00 0.00 0.00 3.06
997 1141 1.865865 CGAATCCCCACTTCCGTATG 58.134 55.000 0.00 0.00 0.00 2.39
999 1143 1.141053 GAATCCCCACTTCCGTATGCT 59.859 52.381 0.00 0.00 0.00 3.79
1416 1566 4.077184 CACGCGGACAAGGGCCTA 62.077 66.667 12.47 0.00 0.00 3.93
1575 1725 0.323542 TCTCCTGGAACTCCCTCGTC 60.324 60.000 0.00 0.00 35.38 4.20
1578 1728 1.658686 CCTGGAACTCCCTCGTCTCG 61.659 65.000 0.00 0.00 35.38 4.04
1725 1875 0.774491 AGGGGTTTGGGTTGGCTCTA 60.774 55.000 0.00 0.00 0.00 2.43
1780 1930 3.578688 GTGGTCAATCTTGGAAATGCAC 58.421 45.455 0.00 0.00 0.00 4.57
1944 2094 2.024176 TTAGGGAAATGTCAGAGCGC 57.976 50.000 0.00 0.00 0.00 5.92
1968 2118 0.752658 TCATGCCAGGGTCTATCACG 59.247 55.000 0.00 0.00 0.00 4.35
1974 2124 2.607282 GCCAGGGTCTATCACGTTATCG 60.607 54.545 0.00 0.00 43.34 2.92
2019 2169 3.448660 AGCTTGGTTATTTTGATCTGGGC 59.551 43.478 0.00 0.00 0.00 5.36
2070 2220 6.991531 AGAGAGCAATGGACTCAGATATTTTC 59.008 38.462 0.00 0.00 36.58 2.29
2106 2256 5.590259 ACTTGTGGATATGTATGCCAAACTC 59.410 40.000 0.00 0.00 32.68 3.01
2265 2415 0.252012 ATGGGGAACGGCCAAATTCA 60.252 50.000 2.24 0.00 38.95 2.57
2475 2625 3.118629 AGGATGATGTGTCATACAACGCT 60.119 43.478 3.68 0.00 46.41 5.07
2553 2703 2.104963 GGAGATAAGGTCTGCGGGAATT 59.895 50.000 0.00 0.00 37.29 2.17
2583 2733 2.760092 TGCTATTTCTTTCATGGGTGCC 59.240 45.455 0.00 0.00 0.00 5.01
2584 2734 3.026694 GCTATTTCTTTCATGGGTGCCT 58.973 45.455 0.00 0.00 0.00 4.75
3180 3330 2.224305 GCCAGAGCATTCGGGTTACTAT 60.224 50.000 0.00 0.00 40.41 2.12
3343 3493 0.548510 GGGGAATGGTTAGCTCTGCT 59.451 55.000 0.00 0.00 43.41 4.24
3359 3509 5.007136 AGCTCTGCTGCGATAAGTTTAAATC 59.993 40.000 0.00 0.00 37.57 2.17
3363 3513 4.033587 TGCTGCGATAAGTTTAAATCGACC 59.966 41.667 11.96 1.75 46.08 4.79
3370 3520 3.757745 AGTTTAAATCGACCGGCAATG 57.242 42.857 0.00 0.00 0.00 2.82
3383 3533 1.202177 CGGCAATGTAACAGATGGTGC 60.202 52.381 0.00 0.00 0.00 5.01
3401 3551 3.181473 GGTGCACTTATATGGTGGTACGA 60.181 47.826 17.98 0.00 35.47 3.43
3532 3682 6.147328 GCAATGACTTTTAGAAGACCGTAGTT 59.853 38.462 0.00 0.00 36.69 2.24
3599 3749 6.633500 TGAGCAATATTAATTGGCACTACC 57.367 37.500 0.00 0.00 42.39 3.18
3613 3763 5.451354 TGGCACTACCACAGTCTACATATA 58.549 41.667 0.00 0.00 46.36 0.86
3643 3793 4.437682 TGGAATTTAGCCTAGTGATGGG 57.562 45.455 0.00 0.00 0.00 4.00
3645 3795 4.141482 TGGAATTTAGCCTAGTGATGGGAC 60.141 45.833 0.00 0.00 0.00 4.46
3667 3817 7.147637 GGGACAGAAGGTAATCATTCTTAGACT 60.148 40.741 0.00 0.00 41.05 3.24
3669 3819 9.738832 GACAGAAGGTAATCATTCTTAGACTAC 57.261 37.037 0.00 0.00 41.05 2.73
3732 3882 2.105649 TGTCCAGCTGTTTGTGTCCATA 59.894 45.455 13.81 0.00 0.00 2.74
3787 3938 2.356695 GTGACGTACCTTTTGCCAGTTT 59.643 45.455 0.00 0.00 0.00 2.66
3802 3953 4.038642 TGCCAGTTTCCCAACTTTGAATAC 59.961 41.667 0.00 0.00 40.66 1.89
3828 3979 2.297701 GCGATGGGGATAAGCAAGAAA 58.702 47.619 0.00 0.00 0.00 2.52
4040 4340 3.318839 TGCTGCACTAAAGTTGCTGAAAT 59.681 39.130 0.00 0.00 0.00 2.17
4057 4357 9.598517 TTGCTGAAATTTCATATTGGGTTATTC 57.401 29.630 20.76 0.00 36.46 1.75
4180 4481 6.882610 TGCTCATTAGATTGTTTCTTGTGT 57.117 33.333 0.00 0.00 35.79 3.72
4199 4500 3.065233 GTGTGTGTGACTGAAGCATCAAA 59.935 43.478 0.00 0.00 34.49 2.69
4210 4515 5.217978 TGAAGCATCAAATGGAAAAAGCT 57.782 34.783 0.00 0.00 30.99 3.74
4211 4516 5.613329 TGAAGCATCAAATGGAAAAAGCTT 58.387 33.333 0.00 0.00 43.03 3.74
4212 4517 6.056884 TGAAGCATCAAATGGAAAAAGCTTT 58.943 32.000 5.69 5.69 40.73 3.51
4213 4518 6.543100 TGAAGCATCAAATGGAAAAAGCTTTT 59.457 30.769 18.74 18.74 40.73 2.27
4214 4519 6.549912 AGCATCAAATGGAAAAAGCTTTTC 57.450 33.333 24.04 16.44 0.00 2.29
4215 4520 6.056884 AGCATCAAATGGAAAAAGCTTTTCA 58.943 32.000 24.04 18.40 34.44 2.69
4216 4521 6.543100 AGCATCAAATGGAAAAAGCTTTTCAA 59.457 30.769 24.04 13.16 33.62 2.69
4217 4522 7.067251 AGCATCAAATGGAAAAAGCTTTTCAAA 59.933 29.630 24.04 12.82 33.62 2.69
4218 4523 7.701501 GCATCAAATGGAAAAAGCTTTTCAAAA 59.298 29.630 24.04 11.16 33.62 2.44
4219 4524 9.012448 CATCAAATGGAAAAAGCTTTTCAAAAC 57.988 29.630 24.04 12.95 33.62 2.43
4269 4574 8.047911 AGATCTGTCTCACAAGAAATGATGAAT 58.952 33.333 0.00 0.00 31.93 2.57
4312 4617 7.147915 GCATTGAATAGGAAATGTTGGGACTTA 60.148 37.037 0.00 0.00 36.39 2.24
4313 4618 8.917088 CATTGAATAGGAAATGTTGGGACTTAT 58.083 33.333 0.00 0.00 0.00 1.73
4314 4619 8.893563 TTGAATAGGAAATGTTGGGACTTATT 57.106 30.769 0.00 0.00 0.00 1.40
4315 4620 8.519799 TGAATAGGAAATGTTGGGACTTATTC 57.480 34.615 0.00 0.00 0.00 1.75
4316 4621 7.282224 TGAATAGGAAATGTTGGGACTTATTCG 59.718 37.037 0.00 0.00 0.00 3.34
4317 4622 4.918588 AGGAAATGTTGGGACTTATTCGT 58.081 39.130 0.00 0.00 0.00 3.85
4318 4623 4.941873 AGGAAATGTTGGGACTTATTCGTC 59.058 41.667 0.00 0.00 0.00 4.20
4319 4624 4.941873 GGAAATGTTGGGACTTATTCGTCT 59.058 41.667 0.00 0.00 34.38 4.18
4320 4625 5.163754 GGAAATGTTGGGACTTATTCGTCTG 60.164 44.000 0.00 0.00 34.38 3.51
4321 4626 2.695359 TGTTGGGACTTATTCGTCTGC 58.305 47.619 0.00 0.00 34.38 4.26
4322 4627 2.037902 TGTTGGGACTTATTCGTCTGCA 59.962 45.455 0.00 0.00 34.38 4.41
4323 4628 2.672961 TGGGACTTATTCGTCTGCAG 57.327 50.000 7.63 7.63 34.38 4.41
4324 4629 2.176045 TGGGACTTATTCGTCTGCAGA 58.824 47.619 13.74 13.74 34.38 4.26
4325 4630 2.766263 TGGGACTTATTCGTCTGCAGAT 59.234 45.455 21.47 6.20 34.38 2.90
4326 4631 3.126831 GGGACTTATTCGTCTGCAGATG 58.873 50.000 27.02 27.02 34.38 2.90
4327 4632 3.181475 GGGACTTATTCGTCTGCAGATGA 60.181 47.826 30.49 30.49 38.23 2.92
4328 4633 4.502259 GGGACTTATTCGTCTGCAGATGAT 60.502 45.833 33.44 24.97 39.56 2.45
4329 4634 4.447054 GGACTTATTCGTCTGCAGATGATG 59.553 45.833 33.44 24.82 39.56 3.07
4330 4635 5.268118 ACTTATTCGTCTGCAGATGATGA 57.732 39.130 33.44 22.69 39.56 2.92
4331 4636 5.288015 ACTTATTCGTCTGCAGATGATGAG 58.712 41.667 33.44 29.10 39.56 2.90
4332 4637 1.931906 TTCGTCTGCAGATGATGAGC 58.068 50.000 33.44 13.06 39.56 4.26
4333 4638 0.819582 TCGTCTGCAGATGATGAGCA 59.180 50.000 30.49 11.16 35.33 4.26
4334 4639 1.411612 TCGTCTGCAGATGATGAGCAT 59.588 47.619 30.49 0.00 40.77 3.79
4335 4640 1.527311 CGTCTGCAGATGATGAGCATG 59.473 52.381 28.61 0.48 37.34 4.06
4336 4641 2.802057 CGTCTGCAGATGATGAGCATGA 60.802 50.000 28.61 0.00 37.34 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.977129 TGGGAAGGCCAATTTTCTTGG 59.023 47.619 5.01 0.00 42.37 3.61
7 8 2.368221 TGTGGGAAGGCCAATTTTCTTG 59.632 45.455 5.01 0.00 35.15 3.02
8 9 2.688477 TGTGGGAAGGCCAATTTTCTT 58.312 42.857 5.01 0.00 35.15 2.52
9 10 2.397044 TGTGGGAAGGCCAATTTTCT 57.603 45.000 5.01 0.00 35.15 2.52
10 11 3.483808 TTTGTGGGAAGGCCAATTTTC 57.516 42.857 5.01 0.00 35.15 2.29
11 12 3.457749 TCTTTTGTGGGAAGGCCAATTTT 59.542 39.130 5.01 0.00 35.15 1.82
12 13 3.044894 TCTTTTGTGGGAAGGCCAATTT 58.955 40.909 5.01 0.00 35.15 1.82
13 14 2.688477 TCTTTTGTGGGAAGGCCAATT 58.312 42.857 5.01 0.00 35.15 2.32
14 15 2.397044 TCTTTTGTGGGAAGGCCAAT 57.603 45.000 5.01 0.00 35.15 3.16
15 16 2.397044 ATCTTTTGTGGGAAGGCCAA 57.603 45.000 5.01 0.00 35.15 4.52
16 17 3.534357 TTATCTTTTGTGGGAAGGCCA 57.466 42.857 5.01 0.00 35.15 5.36
17 18 6.379988 TCTTATTTATCTTTTGTGGGAAGGCC 59.620 38.462 0.00 0.00 0.00 5.19
18 19 7.404671 TCTTATTTATCTTTTGTGGGAAGGC 57.595 36.000 0.00 0.00 0.00 4.35
31 32 9.658799 CACGATGACCCATATTCTTATTTATCT 57.341 33.333 0.00 0.00 0.00 1.98
32 33 9.436957 ACACGATGACCCATATTCTTATTTATC 57.563 33.333 0.00 0.00 0.00 1.75
35 36 9.793259 AATACACGATGACCCATATTCTTATTT 57.207 29.630 0.00 0.00 0.00 1.40
36 37 9.793259 AAATACACGATGACCCATATTCTTATT 57.207 29.630 0.00 0.00 0.00 1.40
39 40 9.621629 TTTAAATACACGATGACCCATATTCTT 57.378 29.630 0.00 0.00 0.00 2.52
40 41 9.793259 ATTTAAATACACGATGACCCATATTCT 57.207 29.630 0.00 0.00 0.00 2.40
44 45 8.842280 GGAAATTTAAATACACGATGACCCATA 58.158 33.333 0.01 0.00 0.00 2.74
45 46 7.559897 AGGAAATTTAAATACACGATGACCCAT 59.440 33.333 0.01 0.00 0.00 4.00
46 47 6.887545 AGGAAATTTAAATACACGATGACCCA 59.112 34.615 0.01 0.00 0.00 4.51
47 48 7.329588 AGGAAATTTAAATACACGATGACCC 57.670 36.000 0.01 0.00 0.00 4.46
48 49 7.220108 GCAAGGAAATTTAAATACACGATGACC 59.780 37.037 0.01 0.00 0.00 4.02
49 50 7.753132 TGCAAGGAAATTTAAATACACGATGAC 59.247 33.333 0.01 0.00 0.00 3.06
50 51 7.821652 TGCAAGGAAATTTAAATACACGATGA 58.178 30.769 0.01 0.00 0.00 2.92
51 52 7.754924 ACTGCAAGGAAATTTAAATACACGATG 59.245 33.333 0.01 0.00 39.30 3.84
52 53 7.826690 ACTGCAAGGAAATTTAAATACACGAT 58.173 30.769 0.01 0.00 39.30 3.73
53 54 7.209471 ACTGCAAGGAAATTTAAATACACGA 57.791 32.000 0.01 0.00 39.30 4.35
54 55 7.867445 AACTGCAAGGAAATTTAAATACACG 57.133 32.000 0.01 0.00 39.30 4.49
67 68 9.474920 CAAATGAAACTAATAAACTGCAAGGAA 57.525 29.630 0.00 0.00 39.30 3.36
68 69 8.637986 ACAAATGAAACTAATAAACTGCAAGGA 58.362 29.630 0.00 0.00 39.30 3.36
69 70 8.816640 ACAAATGAAACTAATAAACTGCAAGG 57.183 30.769 0.00 0.00 39.30 3.61
72 73 9.039870 CCAAACAAATGAAACTAATAAACTGCA 57.960 29.630 0.00 0.00 0.00 4.41
73 74 9.040939 ACCAAACAAATGAAACTAATAAACTGC 57.959 29.630 0.00 0.00 0.00 4.40
79 80 9.275398 ACTCGTACCAAACAAATGAAACTAATA 57.725 29.630 0.00 0.00 0.00 0.98
80 81 8.161699 ACTCGTACCAAACAAATGAAACTAAT 57.838 30.769 0.00 0.00 0.00 1.73
81 82 7.556733 ACTCGTACCAAACAAATGAAACTAA 57.443 32.000 0.00 0.00 0.00 2.24
82 83 7.280428 TGAACTCGTACCAAACAAATGAAACTA 59.720 33.333 0.00 0.00 0.00 2.24
83 84 6.094325 TGAACTCGTACCAAACAAATGAAACT 59.906 34.615 0.00 0.00 0.00 2.66
84 85 6.259638 TGAACTCGTACCAAACAAATGAAAC 58.740 36.000 0.00 0.00 0.00 2.78
85 86 6.438259 TGAACTCGTACCAAACAAATGAAA 57.562 33.333 0.00 0.00 0.00 2.69
86 87 6.316640 TCTTGAACTCGTACCAAACAAATGAA 59.683 34.615 0.00 0.00 0.00 2.57
87 88 5.818336 TCTTGAACTCGTACCAAACAAATGA 59.182 36.000 0.00 0.00 0.00 2.57
88 89 6.055231 TCTTGAACTCGTACCAAACAAATG 57.945 37.500 0.00 0.00 0.00 2.32
89 90 6.687081 TTCTTGAACTCGTACCAAACAAAT 57.313 33.333 0.00 0.00 0.00 2.32
90 91 6.497785 TTTCTTGAACTCGTACCAAACAAA 57.502 33.333 0.00 0.00 0.00 2.83
91 92 6.497785 TTTTCTTGAACTCGTACCAAACAA 57.502 33.333 0.00 0.00 0.00 2.83
92 93 6.403855 CCTTTTTCTTGAACTCGTACCAAACA 60.404 38.462 0.00 0.00 0.00 2.83
93 94 5.969435 CCTTTTTCTTGAACTCGTACCAAAC 59.031 40.000 0.00 0.00 0.00 2.93
94 95 5.648960 ACCTTTTTCTTGAACTCGTACCAAA 59.351 36.000 0.00 0.00 0.00 3.28
95 96 5.187687 ACCTTTTTCTTGAACTCGTACCAA 58.812 37.500 0.00 0.00 0.00 3.67
96 97 4.773013 ACCTTTTTCTTGAACTCGTACCA 58.227 39.130 0.00 0.00 0.00 3.25
97 98 4.812626 TGACCTTTTTCTTGAACTCGTACC 59.187 41.667 0.00 0.00 0.00 3.34
98 99 5.978934 TGACCTTTTTCTTGAACTCGTAC 57.021 39.130 0.00 0.00 0.00 3.67
99 100 6.540914 ACAATGACCTTTTTCTTGAACTCGTA 59.459 34.615 0.00 0.00 0.00 3.43
100 101 5.357032 ACAATGACCTTTTTCTTGAACTCGT 59.643 36.000 0.00 0.00 0.00 4.18
101 102 5.682862 CACAATGACCTTTTTCTTGAACTCG 59.317 40.000 0.00 0.00 0.00 4.18
102 103 6.564328 ACACAATGACCTTTTTCTTGAACTC 58.436 36.000 0.00 0.00 0.00 3.01
103 104 6.530019 ACACAATGACCTTTTTCTTGAACT 57.470 33.333 0.00 0.00 0.00 3.01
104 105 7.595311 AAACACAATGACCTTTTTCTTGAAC 57.405 32.000 0.00 0.00 0.00 3.18
105 106 8.614469 AAAAACACAATGACCTTTTTCTTGAA 57.386 26.923 0.00 0.00 0.00 2.69
131 132 9.681062 CTTTCTAAAACATGATTACCTTCCCTA 57.319 33.333 0.00 0.00 0.00 3.53
132 133 7.122799 GCTTTCTAAAACATGATTACCTTCCCT 59.877 37.037 0.00 0.00 0.00 4.20
133 134 7.093945 TGCTTTCTAAAACATGATTACCTTCCC 60.094 37.037 0.00 0.00 0.00 3.97
134 135 7.826690 TGCTTTCTAAAACATGATTACCTTCC 58.173 34.615 0.00 0.00 0.00 3.46
135 136 9.860898 ATTGCTTTCTAAAACATGATTACCTTC 57.139 29.630 0.00 0.00 0.00 3.46
193 194 9.710818 ACTGGAAGAAGGACAAGTTATACTATA 57.289 33.333 0.00 0.00 37.43 1.31
194 195 8.611051 ACTGGAAGAAGGACAAGTTATACTAT 57.389 34.615 0.00 0.00 37.43 2.12
195 196 7.672660 TGACTGGAAGAAGGACAAGTTATACTA 59.327 37.037 0.00 0.00 37.43 1.82
196 197 6.497259 TGACTGGAAGAAGGACAAGTTATACT 59.503 38.462 0.00 0.00 37.43 2.12
197 198 6.590677 GTGACTGGAAGAAGGACAAGTTATAC 59.409 42.308 0.00 0.00 37.43 1.47
198 199 6.295688 GGTGACTGGAAGAAGGACAAGTTATA 60.296 42.308 0.00 0.00 37.43 0.98
199 200 5.513267 GGTGACTGGAAGAAGGACAAGTTAT 60.513 44.000 0.00 0.00 37.43 1.89
200 201 4.202326 GGTGACTGGAAGAAGGACAAGTTA 60.202 45.833 0.00 0.00 37.43 2.24
201 202 3.433740 GGTGACTGGAAGAAGGACAAGTT 60.434 47.826 0.00 0.00 37.43 2.66
202 203 2.104963 GGTGACTGGAAGAAGGACAAGT 59.895 50.000 0.00 0.00 37.43 3.16
203 204 2.551071 GGGTGACTGGAAGAAGGACAAG 60.551 54.545 0.00 0.00 37.43 3.16
204 205 1.420138 GGGTGACTGGAAGAAGGACAA 59.580 52.381 0.00 0.00 37.43 3.18
205 206 1.056660 GGGTGACTGGAAGAAGGACA 58.943 55.000 0.00 0.00 37.43 4.02
206 207 1.056660 TGGGTGACTGGAAGAAGGAC 58.943 55.000 0.00 0.00 37.43 3.85
207 208 1.699634 CTTGGGTGACTGGAAGAAGGA 59.300 52.381 0.00 0.00 37.43 3.36
208 209 1.884067 GCTTGGGTGACTGGAAGAAGG 60.884 57.143 0.00 0.00 37.43 3.46
209 210 1.202806 TGCTTGGGTGACTGGAAGAAG 60.203 52.381 0.00 0.00 37.43 2.85
210 211 0.843309 TGCTTGGGTGACTGGAAGAA 59.157 50.000 0.00 0.00 37.43 2.52
211 212 0.843309 TTGCTTGGGTGACTGGAAGA 59.157 50.000 0.00 0.00 37.43 2.87
212 213 1.542915 CATTGCTTGGGTGACTGGAAG 59.457 52.381 0.00 0.00 42.29 3.46
213 214 1.619654 CATTGCTTGGGTGACTGGAA 58.380 50.000 0.00 0.00 0.00 3.53
214 215 0.895100 GCATTGCTTGGGTGACTGGA 60.895 55.000 0.16 0.00 0.00 3.86
215 216 1.180456 TGCATTGCTTGGGTGACTGG 61.180 55.000 10.49 0.00 0.00 4.00
216 217 0.892755 ATGCATTGCTTGGGTGACTG 59.107 50.000 10.49 0.00 0.00 3.51
217 218 1.180029 GATGCATTGCTTGGGTGACT 58.820 50.000 10.49 0.00 0.00 3.41
218 219 1.180029 AGATGCATTGCTTGGGTGAC 58.820 50.000 10.49 0.00 0.00 3.67
219 220 2.804986 TAGATGCATTGCTTGGGTGA 57.195 45.000 10.49 0.00 0.00 4.02
220 221 3.018856 TCTTAGATGCATTGCTTGGGTG 58.981 45.455 10.49 0.00 0.00 4.61
221 222 3.370840 TCTTAGATGCATTGCTTGGGT 57.629 42.857 10.49 0.00 0.00 4.51
222 223 4.724074 TTTCTTAGATGCATTGCTTGGG 57.276 40.909 10.49 0.00 0.00 4.12
223 224 8.192774 TCTTTATTTCTTAGATGCATTGCTTGG 58.807 33.333 10.49 0.00 0.00 3.61
224 225 9.234384 CTCTTTATTTCTTAGATGCATTGCTTG 57.766 33.333 10.49 0.00 0.00 4.01
225 226 8.411683 CCTCTTTATTTCTTAGATGCATTGCTT 58.588 33.333 10.49 3.11 0.00 3.91
226 227 7.559170 ACCTCTTTATTTCTTAGATGCATTGCT 59.441 33.333 10.49 0.00 0.00 3.91
227 228 7.710896 ACCTCTTTATTTCTTAGATGCATTGC 58.289 34.615 0.00 0.46 0.00 3.56
228 229 9.727627 GAACCTCTTTATTTCTTAGATGCATTG 57.272 33.333 0.00 0.00 0.00 2.82
229 230 9.692325 AGAACCTCTTTATTTCTTAGATGCATT 57.308 29.630 0.00 0.00 0.00 3.56
230 231 9.336171 GAGAACCTCTTTATTTCTTAGATGCAT 57.664 33.333 0.00 0.00 29.54 3.96
231 232 7.492669 CGAGAACCTCTTTATTTCTTAGATGCA 59.507 37.037 0.00 0.00 29.54 3.96
232 233 7.517575 GCGAGAACCTCTTTATTTCTTAGATGC 60.518 40.741 0.00 0.00 29.54 3.91
233 234 7.042389 GGCGAGAACCTCTTTATTTCTTAGATG 60.042 40.741 0.00 0.00 29.54 2.90
234 235 6.987404 GGCGAGAACCTCTTTATTTCTTAGAT 59.013 38.462 0.00 0.00 29.54 1.98
235 236 6.070995 TGGCGAGAACCTCTTTATTTCTTAGA 60.071 38.462 0.00 0.00 29.54 2.10
236 237 6.036191 GTGGCGAGAACCTCTTTATTTCTTAG 59.964 42.308 0.00 0.00 29.54 2.18
237 238 5.873164 GTGGCGAGAACCTCTTTATTTCTTA 59.127 40.000 0.00 0.00 29.54 2.10
238 239 4.695928 GTGGCGAGAACCTCTTTATTTCTT 59.304 41.667 0.00 0.00 29.54 2.52
239 240 4.020128 AGTGGCGAGAACCTCTTTATTTCT 60.020 41.667 0.00 0.00 29.20 2.52
240 241 4.254492 AGTGGCGAGAACCTCTTTATTTC 58.746 43.478 0.00 0.00 29.20 2.17
241 242 4.254492 GAGTGGCGAGAACCTCTTTATTT 58.746 43.478 0.00 0.00 33.74 1.40
242 243 3.676324 CGAGTGGCGAGAACCTCTTTATT 60.676 47.826 0.00 0.00 44.57 1.40
243 244 2.159226 CGAGTGGCGAGAACCTCTTTAT 60.159 50.000 0.00 0.00 44.57 1.40
244 245 1.201647 CGAGTGGCGAGAACCTCTTTA 59.798 52.381 0.00 0.00 44.57 1.85
245 246 0.038159 CGAGTGGCGAGAACCTCTTT 60.038 55.000 0.00 0.00 44.57 2.52
246 247 1.179814 ACGAGTGGCGAGAACCTCTT 61.180 55.000 0.00 0.00 44.57 2.85
247 248 0.322277 TACGAGTGGCGAGAACCTCT 60.322 55.000 0.00 0.00 44.57 3.69
248 249 0.739561 ATACGAGTGGCGAGAACCTC 59.260 55.000 0.00 0.00 44.57 3.85
249 250 0.456221 CATACGAGTGGCGAGAACCT 59.544 55.000 0.00 0.00 44.57 3.50
250 251 0.172803 ACATACGAGTGGCGAGAACC 59.827 55.000 0.00 0.00 44.57 3.62
251 252 2.717530 CTACATACGAGTGGCGAGAAC 58.282 52.381 0.00 0.00 44.57 3.01
252 253 1.065102 GCTACATACGAGTGGCGAGAA 59.935 52.381 0.00 0.00 44.57 2.87
253 254 0.661552 GCTACATACGAGTGGCGAGA 59.338 55.000 0.00 0.00 44.57 4.04
254 255 3.165559 GCTACATACGAGTGGCGAG 57.834 57.895 0.00 0.00 44.57 5.03
257 258 3.066342 TGAACTAGCTACATACGAGTGGC 59.934 47.826 7.43 7.43 45.16 5.01
258 259 4.575236 TCTGAACTAGCTACATACGAGTGG 59.425 45.833 0.00 0.00 0.00 4.00
259 260 5.294799 AGTCTGAACTAGCTACATACGAGTG 59.705 44.000 0.00 0.00 32.59 3.51
260 261 5.430007 AGTCTGAACTAGCTACATACGAGT 58.570 41.667 0.00 0.00 32.59 4.18
261 262 5.049954 GGAGTCTGAACTAGCTACATACGAG 60.050 48.000 0.00 0.00 35.28 4.18
262 263 4.815308 GGAGTCTGAACTAGCTACATACGA 59.185 45.833 0.00 0.00 35.28 3.43
263 264 4.575236 TGGAGTCTGAACTAGCTACATACG 59.425 45.833 0.00 0.00 35.28 3.06
264 265 6.452494 TTGGAGTCTGAACTAGCTACATAC 57.548 41.667 0.00 0.00 35.28 2.39
265 266 6.040955 CCATTGGAGTCTGAACTAGCTACATA 59.959 42.308 0.00 0.00 35.28 2.29
266 267 5.163364 CCATTGGAGTCTGAACTAGCTACAT 60.163 44.000 0.00 0.00 35.28 2.29
267 268 4.160439 CCATTGGAGTCTGAACTAGCTACA 59.840 45.833 0.00 0.00 35.28 2.74
268 269 4.402793 TCCATTGGAGTCTGAACTAGCTAC 59.597 45.833 0.00 0.00 35.28 3.58
269 270 4.610333 TCCATTGGAGTCTGAACTAGCTA 58.390 43.478 0.00 0.00 35.28 3.32
270 271 3.445008 TCCATTGGAGTCTGAACTAGCT 58.555 45.455 0.00 0.00 35.28 3.32
271 272 3.791245 CTCCATTGGAGTCTGAACTAGC 58.209 50.000 22.45 0.00 44.25 3.42
283 284 1.352017 ACAGTGTGCATCTCCATTGGA 59.648 47.619 5.05 5.05 0.00 3.53
284 285 1.741706 GACAGTGTGCATCTCCATTGG 59.258 52.381 0.00 0.00 0.00 3.16
285 286 2.676839 GAGACAGTGTGCATCTCCATTG 59.323 50.000 0.00 0.20 34.06 2.82
286 287 2.303890 TGAGACAGTGTGCATCTCCATT 59.696 45.455 0.00 0.00 38.49 3.16
287 288 1.904537 TGAGACAGTGTGCATCTCCAT 59.095 47.619 0.00 0.00 38.49 3.41
288 289 1.274447 CTGAGACAGTGTGCATCTCCA 59.726 52.381 0.00 0.00 38.49 3.86
289 290 1.274728 ACTGAGACAGTGTGCATCTCC 59.725 52.381 0.00 0.00 43.63 3.71
290 291 2.739885 ACTGAGACAGTGTGCATCTC 57.260 50.000 0.00 7.23 43.63 2.75
291 292 2.608998 CGAACTGAGACAGTGTGCATCT 60.609 50.000 0.00 0.00 44.62 2.90
292 293 1.723542 CGAACTGAGACAGTGTGCATC 59.276 52.381 0.00 0.00 44.62 3.91
293 294 1.788258 CGAACTGAGACAGTGTGCAT 58.212 50.000 0.00 0.00 44.62 3.96
294 295 0.875908 GCGAACTGAGACAGTGTGCA 60.876 55.000 0.00 0.00 44.62 4.57
295 296 1.856012 GCGAACTGAGACAGTGTGC 59.144 57.895 0.00 8.58 44.62 4.57
296 297 1.278172 CCGCGAACTGAGACAGTGTG 61.278 60.000 8.23 2.88 44.62 3.82
297 298 1.007271 CCGCGAACTGAGACAGTGT 60.007 57.895 8.23 0.00 44.62 3.55
298 299 2.375766 GCCGCGAACTGAGACAGTG 61.376 63.158 8.23 0.00 44.62 3.66
300 301 3.175240 CGCCGCGAACTGAGACAG 61.175 66.667 8.23 0.00 37.52 3.51
301 302 4.717629 CCGCCGCGAACTGAGACA 62.718 66.667 15.93 0.00 0.00 3.41
312 313 3.593794 ATCTACTCGTCCCGCCGC 61.594 66.667 0.00 0.00 0.00 6.53
313 314 1.516365 ATCATCTACTCGTCCCGCCG 61.516 60.000 0.00 0.00 0.00 6.46
314 315 0.241481 GATCATCTACTCGTCCCGCC 59.759 60.000 0.00 0.00 0.00 6.13
315 316 0.952280 TGATCATCTACTCGTCCCGC 59.048 55.000 0.00 0.00 0.00 6.13
316 317 2.222886 AGTGATCATCTACTCGTCCCG 58.777 52.381 0.00 0.00 0.00 5.14
317 318 2.554893 GGAGTGATCATCTACTCGTCCC 59.445 54.545 0.00 0.00 43.24 4.46
318 319 2.554893 GGGAGTGATCATCTACTCGTCC 59.445 54.545 0.00 0.00 43.24 4.79
319 320 2.554893 GGGGAGTGATCATCTACTCGTC 59.445 54.545 0.00 0.00 43.24 4.20
320 321 2.175931 AGGGGAGTGATCATCTACTCGT 59.824 50.000 0.00 0.00 43.24 4.18
321 322 2.870175 AGGGGAGTGATCATCTACTCG 58.130 52.381 0.00 0.00 43.24 4.18
322 323 5.587043 CGTATAGGGGAGTGATCATCTACTC 59.413 48.000 0.00 0.08 41.95 2.59
323 324 5.014333 ACGTATAGGGGAGTGATCATCTACT 59.986 44.000 0.00 0.00 0.00 2.57
324 325 5.254901 ACGTATAGGGGAGTGATCATCTAC 58.745 45.833 0.00 0.00 0.00 2.59
325 326 5.516059 ACGTATAGGGGAGTGATCATCTA 57.484 43.478 0.00 0.00 0.00 1.98
326 327 4.390129 ACGTATAGGGGAGTGATCATCT 57.610 45.455 0.00 0.00 0.00 2.90
327 328 4.641094 CCTACGTATAGGGGAGTGATCATC 59.359 50.000 0.00 0.00 44.06 2.92
328 329 4.601084 CCTACGTATAGGGGAGTGATCAT 58.399 47.826 0.00 0.00 44.06 2.45
329 330 4.030314 CCTACGTATAGGGGAGTGATCA 57.970 50.000 0.00 0.00 44.06 2.92
340 341 2.352814 GCTGGCATGGTCCTACGTATAG 60.353 54.545 0.00 0.00 0.00 1.31
341 342 1.616865 GCTGGCATGGTCCTACGTATA 59.383 52.381 0.00 0.00 0.00 1.47
342 343 0.393077 GCTGGCATGGTCCTACGTAT 59.607 55.000 0.00 0.00 0.00 3.06
343 344 1.682451 GGCTGGCATGGTCCTACGTA 61.682 60.000 0.00 0.00 0.00 3.57
344 345 2.584608 GCTGGCATGGTCCTACGT 59.415 61.111 0.00 0.00 0.00 3.57
345 346 2.203070 GGCTGGCATGGTCCTACG 60.203 66.667 0.00 0.00 0.00 3.51
346 347 2.193248 GGGCTGGCATGGTCCTAC 59.807 66.667 2.88 0.00 0.00 3.18
347 348 3.096495 GGGGCTGGCATGGTCCTA 61.096 66.667 2.88 0.00 0.00 2.94
349 350 4.828296 CAGGGGCTGGCATGGTCC 62.828 72.222 2.88 0.00 0.00 4.46
350 351 3.065787 ATCAGGGGCTGGCATGGTC 62.066 63.158 2.88 0.00 31.51 4.02
351 352 3.025599 ATCAGGGGCTGGCATGGT 61.026 61.111 2.88 0.00 31.51 3.55
352 353 1.998444 TACATCAGGGGCTGGCATGG 61.998 60.000 2.88 0.00 31.51 3.66
353 354 0.111832 ATACATCAGGGGCTGGCATG 59.888 55.000 2.88 1.25 31.51 4.06
354 355 0.403271 GATACATCAGGGGCTGGCAT 59.597 55.000 2.88 0.00 31.51 4.40
355 356 0.987613 TGATACATCAGGGGCTGGCA 60.988 55.000 2.88 0.00 32.11 4.92
356 357 0.403271 ATGATACATCAGGGGCTGGC 59.597 55.000 0.00 0.00 40.64 4.85
357 358 1.983691 AGATGATACATCAGGGGCTGG 59.016 52.381 13.06 0.00 40.64 4.85
358 359 3.784511 AAGATGATACATCAGGGGCTG 57.215 47.619 13.06 0.00 40.64 4.85
359 360 3.979347 AGAAAGATGATACATCAGGGGCT 59.021 43.478 13.06 2.18 40.64 5.19
360 361 4.041444 AGAGAAAGATGATACATCAGGGGC 59.959 45.833 13.06 1.72 40.64 5.80
361 362 5.822132 AGAGAAAGATGATACATCAGGGG 57.178 43.478 13.06 0.00 40.64 4.79
362 363 8.187913 TCTTAGAGAAAGATGATACATCAGGG 57.812 38.462 13.06 0.00 39.36 4.45
367 368 9.709495 GCTCATTCTTAGAGAAAGATGATACAT 57.291 33.333 0.00 0.00 43.75 2.29
376 377 7.804843 ATTGATGGCTCATTCTTAGAGAAAG 57.195 36.000 0.00 0.00 37.82 2.62
386 387 6.995091 AGGTAAAGAGTATTGATGGCTCATTC 59.005 38.462 0.00 0.00 0.00 2.67
448 556 5.104360 TCTCATGGGGATCTTCTCGAAAAAT 60.104 40.000 0.00 0.00 0.00 1.82
452 560 3.032265 TCTCATGGGGATCTTCTCGAA 57.968 47.619 0.00 0.00 0.00 3.71
478 586 4.127171 CCTTGGTATTGGTATGAAGTCGG 58.873 47.826 0.00 0.00 0.00 4.79
486 594 0.476771 CCCGGCCTTGGTATTGGTAT 59.523 55.000 0.00 0.00 0.00 2.73
489 597 0.751643 CTTCCCGGCCTTGGTATTGG 60.752 60.000 0.00 0.00 0.00 3.16
532 640 5.873179 TTCCCGCTCTTATGTTAAACAAG 57.127 39.130 0.00 0.00 0.00 3.16
542 650 2.630580 GTCTCTCCATTCCCGCTCTTAT 59.369 50.000 0.00 0.00 0.00 1.73
549 657 0.669077 CTACCGTCTCTCCATTCCCG 59.331 60.000 0.00 0.00 0.00 5.14
570 678 2.280628 CAGGAGTTTCTACCGGCAATC 58.719 52.381 0.00 0.00 0.00 2.67
574 682 0.458025 CGACAGGAGTTTCTACCGGC 60.458 60.000 0.00 0.00 0.00 6.13
588 696 2.288457 ACAATGACTCACTCACCGACAG 60.288 50.000 0.00 0.00 0.00 3.51
591 699 1.068541 CGACAATGACTCACTCACCGA 60.069 52.381 0.00 0.00 0.00 4.69
599 707 4.801330 ATTGTACTCCGACAATGACTCA 57.199 40.909 1.14 0.00 46.00 3.41
606 714 4.895668 AGGGTTTATTGTACTCCGACAA 57.104 40.909 0.00 0.00 43.23 3.18
625 733 1.457346 ACACGTACCCTCTCGTTAGG 58.543 55.000 0.00 0.00 38.23 2.69
631 751 1.014564 GCAGCAACACGTACCCTCTC 61.015 60.000 0.00 0.00 0.00 3.20
632 752 1.004918 GCAGCAACACGTACCCTCT 60.005 57.895 0.00 0.00 0.00 3.69
639 759 3.255642 AGAATAAAATGGCAGCAACACGT 59.744 39.130 0.00 0.00 0.00 4.49
643 763 7.832503 ATTTGTAGAATAAAATGGCAGCAAC 57.167 32.000 0.00 0.00 0.00 4.17
671 797 7.069085 GGGAATATTGGTGCCGTAGATATAGTA 59.931 40.741 0.00 0.00 0.00 1.82
679 805 2.550208 GGAGGGAATATTGGTGCCGTAG 60.550 54.545 0.00 0.00 0.00 3.51
683 809 2.683211 ATGGAGGGAATATTGGTGCC 57.317 50.000 0.00 0.00 0.00 5.01
684 810 3.319122 GTGAATGGAGGGAATATTGGTGC 59.681 47.826 0.00 0.00 0.00 5.01
685 811 4.796606 AGTGAATGGAGGGAATATTGGTG 58.203 43.478 0.00 0.00 0.00 4.17
721 847 9.713684 TCTAATATTTGTGAATGGAGGGATTTT 57.286 29.630 0.00 0.00 0.00 1.82
722 848 9.887862 ATCTAATATTTGTGAATGGAGGGATTT 57.112 29.630 0.00 0.00 0.00 2.17
723 849 9.305555 CATCTAATATTTGTGAATGGAGGGATT 57.694 33.333 0.00 0.00 0.00 3.01
724 850 7.395489 GCATCTAATATTTGTGAATGGAGGGAT 59.605 37.037 0.00 0.00 0.00 3.85
727 853 7.756395 AGCATCTAATATTTGTGAATGGAGG 57.244 36.000 0.00 0.00 0.00 4.30
862 988 6.097915 TGATTTATTGATCGGAGGGAGTAC 57.902 41.667 0.00 0.00 0.00 2.73
877 1003 8.863086 CCATATGGACCACTTTGATGATTTATT 58.137 33.333 17.49 0.00 37.39 1.40
891 1018 1.807814 ACTCCCTCCATATGGACCAC 58.192 55.000 20.98 0.00 39.78 4.16
921 1063 6.313658 GGACCATTTTTGTGATTTATCCAAGC 59.686 38.462 0.00 0.00 0.00 4.01
1406 1556 1.081092 TGGAGCTCTAGGCCCTTGT 59.919 57.895 14.64 0.00 43.05 3.16
1458 1608 2.970324 GTGTTGCCCGCGAAGACA 60.970 61.111 8.23 3.87 0.00 3.41
1627 1777 1.843376 CCCCGCTCCCCATCATACT 60.843 63.158 0.00 0.00 0.00 2.12
1725 1875 1.005037 TTTCAGCGCGAGTCCATGT 60.005 52.632 12.10 0.00 0.00 3.21
1780 1930 4.402056 ACTTCCCGTACATATCAACCAG 57.598 45.455 0.00 0.00 0.00 4.00
1944 2094 1.043116 TAGACCCTGGCATGACTCCG 61.043 60.000 0.00 0.00 0.00 4.63
1968 2118 3.927552 GCAGGTAGCAAACTCGATAAC 57.072 47.619 0.00 0.00 44.79 1.89
2019 2169 3.858135 ACTATACCCATGTACCTCCCTG 58.142 50.000 0.00 0.00 0.00 4.45
2070 2220 1.336440 TCCACAAGTGAATTGGCAACG 59.664 47.619 0.00 0.00 43.68 4.10
2106 2256 0.610687 AGGCTTTCTCCAGAGAACCG 59.389 55.000 9.60 5.72 46.13 4.44
2265 2415 5.014755 TGGAAGTACATTCACCAGGGTTATT 59.985 40.000 0.00 0.00 39.91 1.40
2475 2625 5.221925 ACTCTGAGAATAACCCAGAAGCAAA 60.222 40.000 12.44 0.00 0.00 3.68
2553 2703 7.446319 CCCATGAAAGAAATAGCATCATACTCA 59.554 37.037 0.00 0.00 0.00 3.41
2583 2733 6.748658 CACATAAATTGGTACATGCAGTCAAG 59.251 38.462 0.00 0.00 39.30 3.02
2584 2734 6.619744 CACATAAATTGGTACATGCAGTCAA 58.380 36.000 0.00 0.00 39.30 3.18
3126 3276 2.497107 AATGTTCCGCTGCATATTGC 57.503 45.000 0.00 0.00 45.29 3.56
3138 3288 4.507756 GGCTTCAACTCAAACAAATGTTCC 59.492 41.667 0.00 0.00 37.25 3.62
3180 3330 4.565166 GCGTACATGTTTATCAGCAGTGTA 59.435 41.667 2.30 0.00 0.00 2.90
3343 3493 3.552699 CCGGTCGATTTAAACTTATCGCA 59.447 43.478 0.00 0.00 42.42 5.10
3359 3509 1.327460 CATCTGTTACATTGCCGGTCG 59.673 52.381 1.90 0.00 0.00 4.79
3363 3513 1.202177 GCACCATCTGTTACATTGCCG 60.202 52.381 0.00 0.00 0.00 5.69
3370 3520 6.017934 CACCATATAAGTGCACCATCTGTTAC 60.018 42.308 14.63 0.00 0.00 2.50
3383 3533 6.145338 AGACTTCGTACCACCATATAAGTG 57.855 41.667 0.00 0.36 34.91 3.16
3532 3682 0.536724 ATACAGTGCAGCCATCGACA 59.463 50.000 0.00 0.00 0.00 4.35
3599 3749 9.710900 TCCATTAGCAAATATATGTAGACTGTG 57.289 33.333 0.00 0.00 0.00 3.66
3626 3776 4.298626 TCTGTCCCATCACTAGGCTAAAT 58.701 43.478 0.00 0.00 0.00 1.40
3638 3788 5.934781 AGAATGATTACCTTCTGTCCCATC 58.065 41.667 0.00 0.00 31.68 3.51
3643 3793 9.738832 GTAGTCTAAGAATGATTACCTTCTGTC 57.261 37.037 0.00 0.00 32.84 3.51
3787 3938 5.941058 TCGCATTTAGTATTCAAAGTTGGGA 59.059 36.000 0.00 0.00 0.00 4.37
3802 3953 3.411446 TGCTTATCCCCATCGCATTTAG 58.589 45.455 0.00 0.00 0.00 1.85
3828 3979 9.499479 CTGTTCTATTAGCACATCAGGATTATT 57.501 33.333 0.00 0.00 0.00 1.40
3899 4050 5.366460 CAGAGTTGAGGATTAGCACATCAT 58.634 41.667 0.00 0.00 0.00 2.45
4040 4340 8.972458 TCAAGATCGAATAACCCAATATGAAA 57.028 30.769 0.00 0.00 0.00 2.69
4057 4357 6.199908 ACTCGAAATCATTTAGCTCAAGATCG 59.800 38.462 0.00 0.00 0.00 3.69
4164 4465 6.037062 CAGTCACACACACAAGAAACAATCTA 59.963 38.462 0.00 0.00 37.42 1.98
4180 4481 3.253921 CCATTTGATGCTTCAGTCACACA 59.746 43.478 2.23 0.00 32.27 3.72
4199 4500 9.783081 ATATCAGTTTTGAAAAGCTTTTTCCAT 57.217 25.926 24.58 2.69 36.78 3.41
4269 4574 8.922931 ATTCAATGCATATAGTAACATGACCA 57.077 30.769 0.00 0.00 0.00 4.02
4312 4617 2.159000 TGCTCATCATCTGCAGACGAAT 60.159 45.455 20.97 9.98 32.55 3.34
4313 4618 1.205417 TGCTCATCATCTGCAGACGAA 59.795 47.619 20.97 7.82 32.55 3.85
4314 4619 0.819582 TGCTCATCATCTGCAGACGA 59.180 50.000 20.97 18.26 32.55 4.20
4315 4620 1.527311 CATGCTCATCATCTGCAGACG 59.473 52.381 20.97 11.99 40.18 4.18
4316 4621 2.835027 TCATGCTCATCATCTGCAGAC 58.165 47.619 20.97 4.80 40.18 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.