Multiple sequence alignment - TraesCS2A01G550100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G550100 chr2A 100.000 4798 0 0 1 4798 757565811 757561014 0.000000e+00 8861.0
1 TraesCS2A01G550100 chr2A 90.578 467 35 7 4143 4603 757542997 757542534 1.140000e-170 610.0
2 TraesCS2A01G550100 chr2A 76.602 671 143 9 2122 2784 756543344 756544008 1.640000e-94 357.0
3 TraesCS2A01G550100 chr2A 88.583 254 18 5 4143 4387 757544674 757544423 1.010000e-76 298.0
4 TraesCS2A01G550100 chr2A 80.339 295 48 9 1708 2000 756543009 756543295 1.050000e-51 215.0
5 TraesCS2A01G550100 chr2A 91.803 61 3 2 2035 2095 384337784 384337726 3.080000e-12 84.2
6 TraesCS2A01G550100 chr2A 81.633 98 18 0 2125 2222 138527103 138527006 1.110000e-11 82.4
7 TraesCS2A01G550100 chr2D 92.472 1687 88 13 2055 3713 626599936 626598261 0.000000e+00 2375.0
8 TraesCS2A01G550100 chr2D 94.109 1324 63 7 2090 3401 626607274 626608594 0.000000e+00 1999.0
9 TraesCS2A01G550100 chr2D 92.547 966 51 12 3707 4662 626597720 626596766 0.000000e+00 1365.0
10 TraesCS2A01G550100 chr2D 83.670 1090 124 30 910 1972 626713846 626712784 0.000000e+00 977.0
11 TraesCS2A01G550100 chr2D 92.749 662 19 6 1335 1991 626606606 626607243 0.000000e+00 929.0
12 TraesCS2A01G550100 chr2D 86.676 728 77 7 2093 2804 626712737 626712014 0.000000e+00 789.0
13 TraesCS2A01G550100 chr2D 88.095 672 65 4 2125 2784 626749479 626748811 0.000000e+00 784.0
14 TraesCS2A01G550100 chr2D 91.129 496 34 4 4170 4662 626602677 626602189 0.000000e+00 664.0
15 TraesCS2A01G550100 chr2D 90.948 464 31 5 4143 4603 626592383 626591928 8.830000e-172 614.0
16 TraesCS2A01G550100 chr2D 91.729 399 18 4 1127 1525 626601792 626601409 1.520000e-149 540.0
17 TraesCS2A01G550100 chr2D 91.553 367 20 3 1635 1997 626600302 626599943 3.340000e-136 496.0
18 TraesCS2A01G550100 chr2D 79.666 659 92 27 1324 1972 626750187 626749561 2.050000e-118 436.0
19 TraesCS2A01G550100 chr2D 77.386 681 134 11 2122 2786 625587400 625588076 2.090000e-103 387.0
20 TraesCS2A01G550100 chr2D 86.624 314 30 8 995 1299 626606296 626606606 2.140000e-88 337.0
21 TraesCS2A01G550100 chr2D 95.408 196 9 0 1131 1326 626755304 626755109 3.610000e-81 313.0
22 TraesCS2A01G550100 chr2D 88.942 208 16 5 3894 4100 626613409 626613610 2.870000e-62 250.0
23 TraesCS2A01G550100 chr2D 96.721 122 4 0 1516 1637 626600646 626600525 2.260000e-48 204.0
24 TraesCS2A01G550100 chr2D 86.598 97 9 3 1510 1604 625586624 625586718 2.360000e-18 104.0
25 TraesCS2A01G550100 chr2D 93.333 60 2 1 2035 2094 634780590 634780647 2.380000e-13 87.9
26 TraesCS2A01G550100 chr2D 94.340 53 3 0 840 892 626713889 626713837 1.110000e-11 82.4
27 TraesCS2A01G550100 chr2D 91.525 59 3 1 2036 2094 584237622 584237678 3.980000e-11 80.5
28 TraesCS2A01G550100 chr2B 88.386 1834 181 17 2125 3954 768064141 768062336 0.000000e+00 2178.0
29 TraesCS2A01G550100 chr2B 88.168 1834 186 17 2125 3954 768074905 768073099 0.000000e+00 2156.0
30 TraesCS2A01G550100 chr2B 87.915 753 63 19 4009 4749 768062327 768061591 0.000000e+00 861.0
31 TraesCS2A01G550100 chr2B 83.962 742 91 15 2093 2812 768081336 768080601 0.000000e+00 686.0
32 TraesCS2A01G550100 chr2B 85.270 611 64 17 4139 4744 768057464 768056875 1.480000e-169 606.0
33 TraesCS2A01G550100 chr2B 90.811 370 23 8 4009 4369 768073090 768072723 7.220000e-133 484.0
34 TraesCS2A01G550100 chr2B 85.024 414 45 13 4340 4749 768109292 768108892 5.780000e-109 405.0
35 TraesCS2A01G550100 chr2B 82.184 348 43 14 4407 4749 768072719 768072386 1.020000e-71 281.0
36 TraesCS2A01G550100 chr2B 76.080 602 106 28 207 780 725815305 725814714 3.660000e-71 279.0
37 TraesCS2A01G550100 chr2B 80.397 403 44 18 1132 1524 768071646 768071269 1.700000e-69 274.0
38 TraesCS2A01G550100 chr2B 84.074 270 40 2 1712 1981 768070851 768070585 1.710000e-64 257.0
39 TraesCS2A01G550100 chr2B 83.333 270 42 2 1712 1981 768081644 768081378 3.710000e-61 246.0
40 TraesCS2A01G550100 chr2B 83.838 99 14 2 2125 2222 185761717 185761620 5.110000e-15 93.5
41 TraesCS2A01G550100 chr2B 89.394 66 5 1 2036 2101 703352876 703352939 1.110000e-11 82.4
42 TraesCS2A01G550100 chr2B 100.000 40 0 0 4759 4798 768061599 768061560 1.850000e-09 75.0
43 TraesCS2A01G550100 chr2B 100.000 40 0 0 4759 4798 768072394 768072355 1.850000e-09 75.0
44 TraesCS2A01G550100 chr2B 100.000 40 0 0 4759 4798 768108900 768108861 1.850000e-09 75.0
45 TraesCS2A01G550100 chr2B 97.436 39 1 0 4759 4797 768056877 768056839 3.100000e-07 67.6
46 TraesCS2A01G550100 chr4B 77.578 611 97 34 194 780 527964398 527963804 2.770000e-87 333.0
47 TraesCS2A01G550100 chr4B 75.542 646 116 28 183 799 602778085 602777453 3.660000e-71 279.0
48 TraesCS2A01G550100 chr4B 75.733 614 92 41 194 780 489654517 489655100 6.160000e-64 255.0
49 TraesCS2A01G550100 chr4B 80.531 339 51 11 442 777 37346133 37346459 3.710000e-61 246.0
50 TraesCS2A01G550100 chr4B 81.210 314 42 14 491 799 637982360 637982661 2.230000e-58 237.0
51 TraesCS2A01G550100 chr4B 78.167 371 60 17 109 472 68986871 68987227 2.910000e-52 217.0
52 TraesCS2A01G550100 chr4B 91.525 59 3 1 2036 2094 564134519 564134575 3.980000e-11 80.5
53 TraesCS2A01G550100 chr4B 91.111 45 4 0 2054 2098 667919305 667919261 1.440000e-05 62.1
54 TraesCS2A01G550100 chrUn 76.782 547 88 27 194 712 331160602 331161137 2.200000e-68 270.0
55 TraesCS2A01G550100 chr5B 75.397 630 108 33 183 782 547291358 547291970 1.320000e-65 261.0
56 TraesCS2A01G550100 chr5B 78.827 307 55 9 176 478 358616402 358616102 1.050000e-46 198.0
57 TraesCS2A01G550100 chr6D 80.226 354 48 16 441 788 453168267 453167930 3.710000e-61 246.0
58 TraesCS2A01G550100 chr6D 89.655 58 4 2 2037 2094 307118761 307118816 6.660000e-09 73.1
59 TraesCS2A01G550100 chr6D 90.196 51 5 0 2051 2101 96724448 96724398 3.100000e-07 67.6
60 TraesCS2A01G550100 chr7B 77.167 473 73 23 351 799 9636206 9635745 4.800000e-60 243.0
61 TraesCS2A01G550100 chr7B 79.783 277 43 10 217 488 656418040 656417772 6.340000e-44 189.0
62 TraesCS2A01G550100 chr5A 75.306 490 91 19 6 472 467057700 467058182 1.750000e-49 207.0
63 TraesCS2A01G550100 chr7A 74.545 495 90 25 6 478 119688332 119687852 2.950000e-42 183.0
64 TraesCS2A01G550100 chr4A 78.571 294 50 11 188 472 487544519 487544808 1.060000e-41 182.0
65 TraesCS2A01G550100 chr7D 78.041 296 53 9 189 478 32095698 32095409 4.940000e-40 176.0
66 TraesCS2A01G550100 chr7D 88.333 60 5 1 2036 2095 87510801 87510744 2.400000e-08 71.3
67 TraesCS2A01G550100 chr1D 78.799 283 44 9 194 472 391235615 391235885 4.940000e-40 176.0
68 TraesCS2A01G550100 chr1D 91.525 59 3 1 2036 2094 307342372 307342428 3.980000e-11 80.5
69 TraesCS2A01G550100 chr6B 74.617 457 61 26 242 675 256483927 256484351 2.990000e-32 150.0
70 TraesCS2A01G550100 chr3A 89.394 66 5 2 2036 2101 736118081 736118144 1.110000e-11 82.4
71 TraesCS2A01G550100 chr5D 90.323 62 4 1 2036 2097 524638498 524638439 3.980000e-11 80.5
72 TraesCS2A01G550100 chr3D 91.525 59 3 2 2036 2094 5602999 5603055 3.980000e-11 80.5
73 TraesCS2A01G550100 chr6A 91.379 58 3 1 2037 2094 374419381 374419326 1.430000e-10 78.7
74 TraesCS2A01G550100 chr6A 88.136 59 5 1 2036 2094 26632898 26632954 8.620000e-08 69.4
75 TraesCS2A01G550100 chr4D 89.062 64 5 1 2036 2099 483559732 483559793 1.430000e-10 78.7
76 TraesCS2A01G550100 chr1A 85.526 76 6 4 2036 2108 5651168 5651095 1.850000e-09 75.0
77 TraesCS2A01G550100 chr1A 89.831 59 4 1 2036 2094 385890120 385890176 1.850000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G550100 chr2A 757561014 757565811 4797 True 8861.000000 8861 100.000000 1 4798 1 chr2A.!!$R3 4797
1 TraesCS2A01G550100 chr2A 757542534 757544674 2140 True 454.000000 610 89.580500 4143 4603 2 chr2A.!!$R4 460
2 TraesCS2A01G550100 chr2A 756543009 756544008 999 False 286.000000 357 78.470500 1708 2784 2 chr2A.!!$F1 1076
3 TraesCS2A01G550100 chr2D 626606296 626608594 2298 False 1088.333333 1999 91.160667 995 3401 3 chr2D.!!$F5 2406
4 TraesCS2A01G550100 chr2D 626596766 626602677 5911 True 940.666667 2375 92.691833 1127 4662 6 chr2D.!!$R3 3535
5 TraesCS2A01G550100 chr2D 626712014 626713889 1875 True 616.133333 977 88.228667 840 2804 3 chr2D.!!$R4 1964
6 TraesCS2A01G550100 chr2D 626748811 626750187 1376 True 610.000000 784 83.880500 1324 2784 2 chr2D.!!$R5 1460
7 TraesCS2A01G550100 chr2D 625586624 625588076 1452 False 245.500000 387 81.992000 1510 2786 2 chr2D.!!$F4 1276
8 TraesCS2A01G550100 chr2B 768061560 768064141 2581 True 1038.000000 2178 92.100333 2125 4798 3 chr2B.!!$R4 2673
9 TraesCS2A01G550100 chr2B 768070585 768074905 4320 True 587.833333 2156 87.605667 1132 4798 6 chr2B.!!$R5 3666
10 TraesCS2A01G550100 chr2B 768080601 768081644 1043 True 466.000000 686 83.647500 1712 2812 2 chr2B.!!$R6 1100
11 TraesCS2A01G550100 chr2B 768056839 768057464 625 True 336.800000 606 91.353000 4139 4797 2 chr2B.!!$R3 658
12 TraesCS2A01G550100 chr2B 725814714 725815305 591 True 279.000000 279 76.080000 207 780 1 chr2B.!!$R2 573
13 TraesCS2A01G550100 chr4B 527963804 527964398 594 True 333.000000 333 77.578000 194 780 1 chr4B.!!$R1 586
14 TraesCS2A01G550100 chr4B 602777453 602778085 632 True 279.000000 279 75.542000 183 799 1 chr4B.!!$R2 616
15 TraesCS2A01G550100 chr4B 489654517 489655100 583 False 255.000000 255 75.733000 194 780 1 chr4B.!!$F3 586
16 TraesCS2A01G550100 chrUn 331160602 331161137 535 False 270.000000 270 76.782000 194 712 1 chrUn.!!$F1 518
17 TraesCS2A01G550100 chr5B 547291358 547291970 612 False 261.000000 261 75.397000 183 782 1 chr5B.!!$F1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.032130 TCACTTGACGTGCTCTCACC 59.968 55.0 0.00 0.0 43.46 4.02 F
822 868 0.035056 CTGGCTTCGGGATGGAAACT 60.035 55.0 0.00 0.0 0.00 2.66 F
823 869 0.035439 TGGCTTCGGGATGGAAACTC 60.035 55.0 0.00 0.0 0.00 3.01 F
824 870 0.253327 GGCTTCGGGATGGAAACTCT 59.747 55.0 0.00 0.0 0.00 3.24 F
905 951 1.129326 GGACGATCGATTAGTTGCCG 58.871 55.0 24.34 0.0 0.00 5.69 F
2770 4052 0.882042 ATCTCGATGAATGGGCGTGC 60.882 55.0 0.00 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1306 1366 0.101399 CTCGTCATCCAACTCCTCCG 59.899 60.000 0.00 0.0 0.00 4.63 R
1651 2831 0.526211 CGGACAGACGGATCAACAGA 59.474 55.000 0.00 0.0 0.00 3.41 R
1728 2960 1.141657 GGGACTGATCAAGGCTGCATA 59.858 52.381 0.50 0.0 32.61 3.14 R
1877 3113 1.744368 AGCATCTCTGGCAGCAACG 60.744 57.895 10.34 0.0 0.00 4.10 R
2796 4078 2.313041 CCTTGAGGAAAAGGGAGGGATT 59.687 50.000 0.00 0.0 42.68 3.01 R
4671 8203 0.458543 ATCAACACCGCAGCTAGTCG 60.459 55.000 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.569916 GTCACTTGACGTGCTCTCA 57.430 52.632 0.00 0.00 43.46 3.27
26 27 1.132588 GTCACTTGACGTGCTCTCAC 58.867 55.000 0.00 0.00 43.46 3.51
27 28 0.032130 TCACTTGACGTGCTCTCACC 59.968 55.000 0.00 0.00 43.46 4.02
30 31 3.858868 TTGACGTGCTCTCACCGCC 62.859 63.158 0.00 0.00 40.04 6.13
37 38 4.457496 CTCTCACCGCCGCCACAT 62.457 66.667 0.00 0.00 0.00 3.21
41 42 4.403137 CACCGCCGCCACATGTTG 62.403 66.667 0.00 0.00 0.00 3.33
48 49 2.158300 CGCCACATGTTGCGTTCTA 58.842 52.632 30.10 0.00 45.43 2.10
49 50 0.179225 CGCCACATGTTGCGTTCTAC 60.179 55.000 30.10 0.00 45.43 2.59
59 60 3.676742 CGTTCTACGCGCTTCCTC 58.323 61.111 5.73 0.00 33.65 3.71
61 62 1.214589 GTTCTACGCGCTTCCTCCA 59.785 57.895 5.73 0.00 0.00 3.86
63 64 0.963856 TTCTACGCGCTTCCTCCAGA 60.964 55.000 5.73 0.00 0.00 3.86
64 65 0.752009 TCTACGCGCTTCCTCCAGAT 60.752 55.000 5.73 0.00 0.00 2.90
65 66 0.103208 CTACGCGCTTCCTCCAGATT 59.897 55.000 5.73 0.00 0.00 2.40
66 67 0.535335 TACGCGCTTCCTCCAGATTT 59.465 50.000 5.73 0.00 0.00 2.17
67 68 0.741221 ACGCGCTTCCTCCAGATTTC 60.741 55.000 5.73 0.00 0.00 2.17
68 69 0.740868 CGCGCTTCCTCCAGATTTCA 60.741 55.000 5.56 0.00 0.00 2.69
69 70 1.673168 GCGCTTCCTCCAGATTTCAT 58.327 50.000 0.00 0.00 0.00 2.57
70 71 2.019984 GCGCTTCCTCCAGATTTCATT 58.980 47.619 0.00 0.00 0.00 2.57
71 72 2.424956 GCGCTTCCTCCAGATTTCATTT 59.575 45.455 0.00 0.00 0.00 2.32
72 73 3.119352 GCGCTTCCTCCAGATTTCATTTT 60.119 43.478 0.00 0.00 0.00 1.82
73 74 4.096382 GCGCTTCCTCCAGATTTCATTTTA 59.904 41.667 0.00 0.00 0.00 1.52
74 75 5.221126 GCGCTTCCTCCAGATTTCATTTTAT 60.221 40.000 0.00 0.00 0.00 1.40
76 77 7.260603 CGCTTCCTCCAGATTTCATTTTATTT 58.739 34.615 0.00 0.00 0.00 1.40
77 78 7.761249 CGCTTCCTCCAGATTTCATTTTATTTT 59.239 33.333 0.00 0.00 0.00 1.82
78 79 9.440773 GCTTCCTCCAGATTTCATTTTATTTTT 57.559 29.630 0.00 0.00 0.00 1.94
83 84 9.709495 CTCCAGATTTCATTTTATTTTTCCACA 57.291 29.630 0.00 0.00 0.00 4.17
84 85 9.487790 TCCAGATTTCATTTTATTTTTCCACAC 57.512 29.630 0.00 0.00 0.00 3.82
85 86 9.270640 CCAGATTTCATTTTATTTTTCCACACA 57.729 29.630 0.00 0.00 0.00 3.72
88 89 8.655651 ATTTCATTTTATTTTTCCACACACGT 57.344 26.923 0.00 0.00 0.00 4.49
89 90 8.480643 TTTCATTTTATTTTTCCACACACGTT 57.519 26.923 0.00 0.00 0.00 3.99
90 91 8.480643 TTCATTTTATTTTTCCACACACGTTT 57.519 26.923 0.00 0.00 0.00 3.60
91 92 8.480643 TCATTTTATTTTTCCACACACGTTTT 57.519 26.923 0.00 0.00 0.00 2.43
92 93 8.936864 TCATTTTATTTTTCCACACACGTTTTT 58.063 25.926 0.00 0.00 0.00 1.94
93 94 8.993856 CATTTTATTTTTCCACACACGTTTTTG 58.006 29.630 0.00 0.00 0.00 2.44
94 95 6.648725 TTATTTTTCCACACACGTTTTTGG 57.351 33.333 0.24 0.24 0.00 3.28
95 96 1.997669 TTTCCACACACGTTTTTGGC 58.002 45.000 1.89 0.00 0.00 4.52
96 97 1.178276 TTCCACACACGTTTTTGGCT 58.822 45.000 1.89 0.00 0.00 4.75
97 98 1.178276 TCCACACACGTTTTTGGCTT 58.822 45.000 1.89 0.00 0.00 4.35
98 99 1.546476 TCCACACACGTTTTTGGCTTT 59.454 42.857 1.89 0.00 0.00 3.51
99 100 2.028930 TCCACACACGTTTTTGGCTTTT 60.029 40.909 1.89 0.00 0.00 2.27
100 101 2.739379 CCACACACGTTTTTGGCTTTTT 59.261 40.909 0.00 0.00 0.00 1.94
101 102 3.927142 CCACACACGTTTTTGGCTTTTTA 59.073 39.130 0.00 0.00 0.00 1.52
102 103 4.032331 CCACACACGTTTTTGGCTTTTTAG 59.968 41.667 0.00 0.00 0.00 1.85
104 105 5.518487 CACACACGTTTTTGGCTTTTTAGAT 59.482 36.000 0.00 0.00 0.00 1.98
105 106 5.518487 ACACACGTTTTTGGCTTTTTAGATG 59.482 36.000 0.00 0.00 0.00 2.90
106 107 5.518487 CACACGTTTTTGGCTTTTTAGATGT 59.482 36.000 0.00 0.00 0.00 3.06
107 108 6.035542 CACACGTTTTTGGCTTTTTAGATGTT 59.964 34.615 0.00 0.00 0.00 2.71
109 110 7.118535 ACACGTTTTTGGCTTTTTAGATGTTTT 59.881 29.630 0.00 0.00 0.00 2.43
110 111 7.960195 CACGTTTTTGGCTTTTTAGATGTTTTT 59.040 29.630 0.00 0.00 0.00 1.94
149 150 5.299531 GGTTTTTCACCAGTCTTTCTTAGCT 59.700 40.000 0.00 0.00 46.42 3.32
150 151 6.183360 GGTTTTTCACCAGTCTTTCTTAGCTT 60.183 38.462 0.00 0.00 46.42 3.74
151 152 7.258441 GTTTTTCACCAGTCTTTCTTAGCTTT 58.742 34.615 0.00 0.00 0.00 3.51
152 153 7.404671 TTTTCACCAGTCTTTCTTAGCTTTT 57.595 32.000 0.00 0.00 0.00 2.27
153 154 6.619801 TTCACCAGTCTTTCTTAGCTTTTC 57.380 37.500 0.00 0.00 0.00 2.29
154 155 4.750098 TCACCAGTCTTTCTTAGCTTTTCG 59.250 41.667 0.00 0.00 0.00 3.46
155 156 4.750098 CACCAGTCTTTCTTAGCTTTTCGA 59.250 41.667 0.00 0.00 0.00 3.71
156 157 4.750598 ACCAGTCTTTCTTAGCTTTTCGAC 59.249 41.667 0.00 0.00 0.00 4.20
157 158 4.152580 CCAGTCTTTCTTAGCTTTTCGACC 59.847 45.833 0.00 0.00 0.00 4.79
158 159 4.750098 CAGTCTTTCTTAGCTTTTCGACCA 59.250 41.667 0.00 0.00 0.00 4.02
159 160 5.236478 CAGTCTTTCTTAGCTTTTCGACCAA 59.764 40.000 0.00 0.00 0.00 3.67
160 161 5.998363 AGTCTTTCTTAGCTTTTCGACCAAT 59.002 36.000 0.00 0.00 0.00 3.16
161 162 6.486993 AGTCTTTCTTAGCTTTTCGACCAATT 59.513 34.615 0.00 0.00 0.00 2.32
162 163 7.013369 AGTCTTTCTTAGCTTTTCGACCAATTT 59.987 33.333 0.00 0.00 0.00 1.82
163 164 7.648112 GTCTTTCTTAGCTTTTCGACCAATTTT 59.352 33.333 0.00 0.00 0.00 1.82
164 165 8.194769 TCTTTCTTAGCTTTTCGACCAATTTTT 58.805 29.630 0.00 0.00 0.00 1.94
226 230 2.435059 GCTTCCGTGAGAGGCACC 60.435 66.667 0.00 0.00 46.54 5.01
245 249 1.282248 CGTTTTGCTTCCGCGAGAGA 61.282 55.000 8.23 0.00 39.65 3.10
253 257 0.320374 TTCCGCGAGAGACATGGTTT 59.680 50.000 8.23 0.00 0.00 3.27
265 269 2.028130 ACATGGTTTTGCTTCCGTGAA 58.972 42.857 9.88 0.00 41.65 3.18
278 282 3.284449 GTGAAAGGCACGCCCGTT 61.284 61.111 3.95 0.00 37.83 4.44
286 292 2.664851 CACGCCCGTTGCTCTCAA 60.665 61.111 0.00 0.00 38.05 3.02
291 297 0.383949 GCCCGTTGCTCTCAAAAACA 59.616 50.000 0.00 0.00 36.87 2.83
356 363 1.757682 TTTATTTTCGCGGGAGGCAT 58.242 45.000 6.13 0.00 43.84 4.40
358 365 0.179234 TATTTTCGCGGGAGGCATGA 59.821 50.000 6.13 0.00 43.84 3.07
361 368 0.679640 TTTCGCGGGAGGCATGATTT 60.680 50.000 6.13 0.00 43.84 2.17
367 377 1.202336 CGGGAGGCATGATTTTGCTTC 60.202 52.381 0.00 0.43 45.20 3.86
397 407 0.678048 AAGGCCATGCTCTCGGAAAC 60.678 55.000 5.01 0.00 0.00 2.78
486 506 1.476110 GCACGGGTATGCCTATTGGAA 60.476 52.381 0.00 0.00 39.86 3.53
489 509 3.066203 CACGGGTATGCCTATTGGAAAAC 59.934 47.826 0.00 0.00 34.57 2.43
500 538 7.209475 TGCCTATTGGAAAACTTCTGAAAAAG 58.791 34.615 0.00 0.00 34.57 2.27
600 644 7.556275 GTCAAAACCTATCAACATGGGATCTAA 59.444 37.037 5.52 0.00 34.16 2.10
742 788 0.307453 GACAAGTGACGCACATGCAA 59.693 50.000 12.77 0.00 36.67 4.08
745 791 1.436195 AAGTGACGCACATGCAACGT 61.436 50.000 7.84 7.84 43.83 3.99
747 793 0.179250 GTGACGCACATGCAACGTAG 60.179 55.000 8.06 1.35 40.69 3.51
768 814 6.742718 CGTAGCATTTGTCATAACCTGAAAAG 59.257 38.462 0.00 0.00 32.60 2.27
782 828 7.830099 AACCTGAAAAGATGAGAGTGATTTT 57.170 32.000 0.00 0.00 0.00 1.82
785 831 7.088905 CCTGAAAAGATGAGAGTGATTTTTGG 58.911 38.462 0.00 0.00 0.00 3.28
791 837 8.469309 AAGATGAGAGTGATTTTTGGAAGAAA 57.531 30.769 0.00 0.00 0.00 2.52
792 838 8.108551 AGATGAGAGTGATTTTTGGAAGAAAG 57.891 34.615 0.00 0.00 0.00 2.62
793 839 7.723172 AGATGAGAGTGATTTTTGGAAGAAAGT 59.277 33.333 0.00 0.00 0.00 2.66
794 840 8.924511 ATGAGAGTGATTTTTGGAAGAAAGTA 57.075 30.769 0.00 0.00 0.00 2.24
795 841 8.383318 TGAGAGTGATTTTTGGAAGAAAGTAG 57.617 34.615 0.00 0.00 0.00 2.57
800 846 6.490381 GTGATTTTTGGAAGAAAGTAGTCCCT 59.510 38.462 0.00 0.00 0.00 4.20
801 847 6.715264 TGATTTTTGGAAGAAAGTAGTCCCTC 59.285 38.462 0.00 0.00 0.00 4.30
802 848 5.906772 TTTTGGAAGAAAGTAGTCCCTCT 57.093 39.130 0.00 0.00 0.00 3.69
803 849 5.485209 TTTGGAAGAAAGTAGTCCCTCTC 57.515 43.478 0.00 0.00 0.00 3.20
804 850 4.405756 TGGAAGAAAGTAGTCCCTCTCT 57.594 45.455 0.00 0.00 0.00 3.10
805 851 4.090090 TGGAAGAAAGTAGTCCCTCTCTG 58.910 47.826 0.00 0.00 0.00 3.35
806 852 3.449377 GGAAGAAAGTAGTCCCTCTCTGG 59.551 52.174 0.00 0.00 0.00 3.86
808 854 2.043801 AGAAAGTAGTCCCTCTCTGGCT 59.956 50.000 0.00 0.00 0.00 4.75
809 855 2.632763 AAGTAGTCCCTCTCTGGCTT 57.367 50.000 0.00 0.00 0.00 4.35
810 856 2.153034 AGTAGTCCCTCTCTGGCTTC 57.847 55.000 0.00 0.00 0.00 3.86
811 857 0.741915 GTAGTCCCTCTCTGGCTTCG 59.258 60.000 0.00 0.00 0.00 3.79
812 858 0.395862 TAGTCCCTCTCTGGCTTCGG 60.396 60.000 0.00 0.00 0.00 4.30
813 859 2.364317 TCCCTCTCTGGCTTCGGG 60.364 66.667 0.00 0.00 36.21 5.14
814 860 2.364317 CCCTCTCTGGCTTCGGGA 60.364 66.667 0.00 0.00 37.05 5.14
815 861 1.764054 CCCTCTCTGGCTTCGGGAT 60.764 63.158 0.00 0.00 37.05 3.85
818 864 1.001631 TCTCTGGCTTCGGGATGGA 59.998 57.895 0.00 0.00 0.00 3.41
820 866 0.253044 CTCTGGCTTCGGGATGGAAA 59.747 55.000 0.00 0.00 0.00 3.13
822 868 0.035056 CTGGCTTCGGGATGGAAACT 60.035 55.000 0.00 0.00 0.00 2.66
823 869 0.035439 TGGCTTCGGGATGGAAACTC 60.035 55.000 0.00 0.00 0.00 3.01
824 870 0.253327 GGCTTCGGGATGGAAACTCT 59.747 55.000 0.00 0.00 0.00 3.24
827 873 2.827652 CTTCGGGATGGAAACTCTAGC 58.172 52.381 0.00 0.00 0.00 3.42
828 874 2.160721 TCGGGATGGAAACTCTAGCT 57.839 50.000 0.00 0.00 0.00 3.32
829 875 1.757118 TCGGGATGGAAACTCTAGCTG 59.243 52.381 0.00 0.00 0.00 4.24
830 876 1.482593 CGGGATGGAAACTCTAGCTGT 59.517 52.381 0.00 0.00 0.00 4.40
833 879 3.526534 GGATGGAAACTCTAGCTGTGAC 58.473 50.000 0.00 0.00 0.00 3.67
834 880 3.526534 GATGGAAACTCTAGCTGTGACC 58.473 50.000 0.00 0.00 0.00 4.02
835 881 1.272490 TGGAAACTCTAGCTGTGACCG 59.728 52.381 0.00 0.00 0.00 4.79
836 882 1.544691 GGAAACTCTAGCTGTGACCGA 59.455 52.381 0.00 0.00 0.00 4.69
837 883 2.416162 GGAAACTCTAGCTGTGACCGAG 60.416 54.545 0.00 0.00 0.00 4.63
903 949 2.395654 GGAGGACGATCGATTAGTTGC 58.604 52.381 24.34 2.98 0.00 4.17
904 950 2.395654 GAGGACGATCGATTAGTTGCC 58.604 52.381 24.34 9.13 0.00 4.52
905 951 1.129326 GGACGATCGATTAGTTGCCG 58.871 55.000 24.34 0.00 0.00 5.69
906 952 1.268896 GGACGATCGATTAGTTGCCGA 60.269 52.381 24.34 0.00 36.72 5.54
907 953 2.607282 GGACGATCGATTAGTTGCCGAT 60.607 50.000 24.34 0.00 44.49 4.18
908 954 3.365666 GGACGATCGATTAGTTGCCGATA 60.366 47.826 24.34 0.00 42.26 2.92
952 998 4.681781 CGATTCCTAGTCTGAGTTGCCAAT 60.682 45.833 0.00 0.00 0.00 3.16
964 1010 4.405680 TGAGTTGCCAATCTAGCTAGCTAA 59.594 41.667 24.20 15.53 0.00 3.09
972 1018 8.762645 TGCCAATCTAGCTAGCTAACATATATT 58.237 33.333 24.20 13.62 0.00 1.28
973 1019 9.255304 GCCAATCTAGCTAGCTAACATATATTC 57.745 37.037 24.20 5.97 0.00 1.75
974 1020 9.757227 CCAATCTAGCTAGCTAACATATATTCC 57.243 37.037 24.20 0.00 0.00 3.01
977 1023 9.707957 ATCTAGCTAGCTAACATATATTCCTGT 57.292 33.333 24.20 0.00 0.00 4.00
1061 1109 1.871080 AATCAATGGGCGAGACGATC 58.129 50.000 0.00 0.00 0.00 3.69
1273 1333 2.366533 GATCTCGGATACTATCGGGCA 58.633 52.381 4.30 0.00 0.00 5.36
1274 1334 1.531423 TCTCGGATACTATCGGGCAC 58.469 55.000 4.30 0.00 0.00 5.01
1377 1476 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1606 2518 4.331992 CCTGAGTGAGTAAACATGCATCTG 59.668 45.833 0.00 0.00 0.00 2.90
1649 2829 5.531122 TCTCTTATTACTCGTCCCAATGG 57.469 43.478 0.00 0.00 0.00 3.16
1651 2831 3.709653 TCTTATTACTCGTCCCAATGGCT 59.290 43.478 0.00 0.00 0.00 4.75
1653 2833 1.568504 TTACTCGTCCCAATGGCTCT 58.431 50.000 0.00 0.00 0.00 4.09
1724 2956 2.910319 TCCCTACTTAACTGGCATGTGT 59.090 45.455 0.00 0.00 0.00 3.72
1728 2960 5.428253 CCTACTTAACTGGCATGTGTATGT 58.572 41.667 0.00 0.00 36.65 2.29
2031 3275 2.104792 CAGTCAGTTCTTGGAGGTTGGA 59.895 50.000 0.00 0.00 0.00 3.53
2035 3279 2.880890 CAGTTCTTGGAGGTTGGACTTG 59.119 50.000 0.00 0.00 0.00 3.16
2036 3280 2.509964 AGTTCTTGGAGGTTGGACTTGT 59.490 45.455 0.00 0.00 0.00 3.16
2038 3282 3.662759 TCTTGGAGGTTGGACTTGTTT 57.337 42.857 0.00 0.00 0.00 2.83
2039 3283 4.781775 TCTTGGAGGTTGGACTTGTTTA 57.218 40.909 0.00 0.00 0.00 2.01
2040 3284 4.714632 TCTTGGAGGTTGGACTTGTTTAG 58.285 43.478 0.00 0.00 0.00 1.85
2041 3285 4.410883 TCTTGGAGGTTGGACTTGTTTAGA 59.589 41.667 0.00 0.00 0.00 2.10
2042 3286 4.993705 TGGAGGTTGGACTTGTTTAGAT 57.006 40.909 0.00 0.00 0.00 1.98
2043 3287 4.906618 TGGAGGTTGGACTTGTTTAGATC 58.093 43.478 0.00 0.00 0.00 2.75
2044 3288 4.349636 TGGAGGTTGGACTTGTTTAGATCA 59.650 41.667 0.00 0.00 0.00 2.92
2045 3289 4.695928 GGAGGTTGGACTTGTTTAGATCAC 59.304 45.833 0.00 0.00 0.00 3.06
2046 3290 5.513267 GGAGGTTGGACTTGTTTAGATCACT 60.513 44.000 0.00 0.00 0.00 3.41
2047 3291 5.308825 AGGTTGGACTTGTTTAGATCACTG 58.691 41.667 0.00 0.00 0.00 3.66
2048 3292 5.071788 AGGTTGGACTTGTTTAGATCACTGA 59.928 40.000 0.00 0.00 0.00 3.41
2049 3293 5.763204 GGTTGGACTTGTTTAGATCACTGAA 59.237 40.000 0.00 0.00 0.00 3.02
2050 3294 6.073003 GGTTGGACTTGTTTAGATCACTGAAG 60.073 42.308 0.00 0.00 0.00 3.02
2051 3295 6.174720 TGGACTTGTTTAGATCACTGAAGT 57.825 37.500 0.00 0.00 0.00 3.01
2052 3296 7.297936 TGGACTTGTTTAGATCACTGAAGTA 57.702 36.000 0.00 0.00 0.00 2.24
2053 3297 7.907389 TGGACTTGTTTAGATCACTGAAGTAT 58.093 34.615 0.00 0.00 0.00 2.12
2088 3332 9.490379 AAATGCTCTTATATTACTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
2103 3347 8.985922 ACTTTACGGAGGGAGTAGTTATTAATT 58.014 33.333 0.00 0.00 0.00 1.40
2498 3770 5.129634 TCTATGGAAGTTGTGTTGCTTGAA 58.870 37.500 0.00 0.00 0.00 2.69
2755 4037 5.851720 TGTTCAAGATGAGGAGCATATCTC 58.148 41.667 0.00 0.00 37.34 2.75
2770 4052 0.882042 ATCTCGATGAATGGGCGTGC 60.882 55.000 0.00 0.00 0.00 5.34
2787 4069 2.700773 GCGGATCCTTTGGCACCAC 61.701 63.158 10.75 0.00 0.00 4.16
2792 4074 2.764637 ATCCTTTGGCACCACGTCCC 62.765 60.000 0.00 0.00 0.00 4.46
2793 4075 3.353836 CTTTGGCACCACGTCCCG 61.354 66.667 0.00 0.00 0.00 5.14
2796 4078 2.321263 TTTGGCACCACGTCCCGTAA 62.321 55.000 0.00 0.00 38.32 3.18
2822 4104 1.985895 TCCCTTTTCCTCAAGGAGACC 59.014 52.381 0.77 0.00 45.79 3.85
2828 4110 2.583441 CCTCAAGGAGACCACGGCA 61.583 63.158 0.00 0.00 37.39 5.69
2849 4131 4.214758 GCAAAACCGACAAAGGTAGTACAT 59.785 41.667 2.06 0.00 45.21 2.29
3099 4381 3.054802 AGTTGAAACCAATGCCCAAACAA 60.055 39.130 0.00 0.00 0.00 2.83
3133 4415 4.051237 TGGAATGCTAGATGTTTCGATCG 58.949 43.478 9.36 9.36 0.00 3.69
3181 4463 4.518970 TGAAATACAAGAGCTTTGTGGGAC 59.481 41.667 18.57 11.10 34.11 4.46
3220 4502 5.623824 GCTTAGTATTCACGACAAGGGAAGA 60.624 44.000 0.00 0.00 46.80 2.87
3261 4543 1.879380 GTGCAGAACAATGTAGTGCCA 59.121 47.619 14.77 3.71 32.99 4.92
3479 4765 9.806448 TGGTTTTGGTAGCATGATATATTGTAT 57.194 29.630 0.00 0.00 0.00 2.29
3580 4873 3.252215 TCTGGTTGCATACGTCAAAAAGG 59.748 43.478 0.00 0.00 0.00 3.11
3581 4874 2.952978 TGGTTGCATACGTCAAAAAGGT 59.047 40.909 0.00 0.00 0.00 3.50
3601 4894 8.603242 AAAGGTATACTCTTTATATTGCACGG 57.397 34.615 14.15 0.00 33.23 4.94
3675 4976 4.020485 GGACCTACACAACCACAATAGTCT 60.020 45.833 0.00 0.00 0.00 3.24
3720 5568 2.906458 CTGATTGGCTCCCTCGCT 59.094 61.111 0.00 0.00 0.00 4.93
3726 5574 3.157252 GGCTCCCTCGCTCCATCA 61.157 66.667 0.00 0.00 0.00 3.07
3739 5587 2.616510 GCTCCATCAAACTAGTGCACCT 60.617 50.000 14.63 3.48 0.00 4.00
3778 5626 2.140792 AGTCACAGAAGGCCCACGT 61.141 57.895 0.00 0.00 0.00 4.49
3793 5641 3.492656 GCCCACGTGTCATACTGATGTAT 60.493 47.826 15.65 0.00 39.76 2.29
3794 5642 4.693283 CCCACGTGTCATACTGATGTATT 58.307 43.478 15.65 0.00 37.28 1.89
3795 5643 5.737922 GCCCACGTGTCATACTGATGTATTA 60.738 44.000 15.65 0.00 37.28 0.98
3888 5736 0.984230 AAGAAGATCCAACGGCCAGA 59.016 50.000 2.24 0.00 0.00 3.86
3892 5740 0.400213 AGATCCAACGGCCAGAAACA 59.600 50.000 2.24 0.00 0.00 2.83
3916 5764 1.304282 CATGGGAGGGTGAAGGGTG 59.696 63.158 0.00 0.00 0.00 4.61
3921 5769 1.134438 GGAGGGTGAAGGGTGGACTT 61.134 60.000 0.00 0.00 0.00 3.01
3926 5774 2.841881 GGGTGAAGGGTGGACTTACATA 59.158 50.000 0.00 0.00 0.00 2.29
3932 5780 7.612633 GGTGAAGGGTGGACTTACATATTTTTA 59.387 37.037 0.00 0.00 0.00 1.52
3934 5782 9.238368 TGAAGGGTGGACTTACATATTTTTAAG 57.762 33.333 0.00 0.00 0.00 1.85
3965 5813 4.744795 AAGCAGGATGTACTGTAGAAGG 57.255 45.455 0.00 0.00 40.59 3.46
3966 5814 2.432510 AGCAGGATGTACTGTAGAAGGC 59.567 50.000 0.00 0.00 40.59 4.35
4029 5878 7.925993 TGTGTAATAATTCATCCGGATCAAAC 58.074 34.615 15.88 3.17 0.00 2.93
4366 7898 4.111016 CGACCAGCGCTACCACGA 62.111 66.667 10.99 0.00 34.06 4.35
4615 8147 2.264480 CCATCTTCGTGCGTGGGA 59.736 61.111 0.00 0.00 0.00 4.37
4616 8148 1.811266 CCATCTTCGTGCGTGGGAG 60.811 63.158 0.00 0.00 0.00 4.30
4636 8168 1.383523 GAGGGAAGATTTTGAGCGGG 58.616 55.000 0.00 0.00 0.00 6.13
4667 8199 1.869767 CCTGATTAGGCGATGTTGAGC 59.130 52.381 0.00 0.00 37.25 4.26
4672 8204 3.554692 GGCGATGTTGAGCCGACG 61.555 66.667 0.00 0.00 44.22 5.12
4673 8205 2.506217 GCGATGTTGAGCCGACGA 60.506 61.111 0.00 0.00 0.00 4.20
4674 8206 2.789203 GCGATGTTGAGCCGACGAC 61.789 63.158 0.00 0.00 0.00 4.34
4675 8207 1.154016 CGATGTTGAGCCGACGACT 60.154 57.895 0.00 0.00 0.00 4.18
4681 8228 2.278271 GAGCCGACGACTAGCTGC 60.278 66.667 0.00 0.00 36.87 5.25
4689 8236 1.080772 CGACTAGCTGCGGTGTTGA 60.081 57.895 0.00 0.00 0.00 3.18
4703 8250 4.084433 GCGGTGTTGATCTGTTAACGTTAA 60.084 41.667 16.59 16.59 0.00 2.01
4711 8258 8.709646 GTTGATCTGTTAACGTTAACTGAGAAT 58.290 33.333 39.32 31.21 47.00 2.40
4746 8295 2.435059 GAGTGAACTCAGGCCGGC 60.435 66.667 21.18 21.18 42.42 6.13
4747 8296 3.959991 GAGTGAACTCAGGCCGGCC 62.960 68.421 39.29 39.29 42.42 6.13
4750 8299 4.162690 GAACTCAGGCCGGCCGAT 62.163 66.667 38.88 23.54 41.95 4.18
4751 8300 3.682292 GAACTCAGGCCGGCCGATT 62.682 63.158 38.88 29.20 41.95 3.34
4752 8301 3.976701 AACTCAGGCCGGCCGATTG 62.977 63.158 38.88 30.83 41.95 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.007271 CGGTGAGAGCACGTCAAGT 60.007 57.895 0.00 0.00 46.09 3.16
11 12 2.375766 GCGGTGAGAGCACGTCAAG 61.376 63.158 0.00 0.00 46.09 3.02
20 21 4.457496 ATGTGGCGGCGGTGAGAG 62.457 66.667 9.78 0.00 0.00 3.20
23 24 4.634703 AACATGTGGCGGCGGTGA 62.635 61.111 9.78 0.00 0.00 4.02
24 25 4.403137 CAACATGTGGCGGCGGTG 62.403 66.667 9.78 5.48 0.00 4.94
31 32 0.179225 CGTAGAACGCAACATGTGGC 60.179 55.000 15.73 15.73 33.65 5.01
32 33 3.947279 CGTAGAACGCAACATGTGG 57.053 52.632 0.00 0.00 33.65 4.17
43 44 0.802607 CTGGAGGAAGCGCGTAGAAC 60.803 60.000 8.43 0.00 0.00 3.01
45 46 0.752009 ATCTGGAGGAAGCGCGTAGA 60.752 55.000 8.43 0.00 0.00 2.59
48 49 0.741221 GAAATCTGGAGGAAGCGCGT 60.741 55.000 8.43 0.00 0.00 6.01
49 50 0.740868 TGAAATCTGGAGGAAGCGCG 60.741 55.000 0.00 0.00 0.00 6.86
51 52 4.708726 AAAATGAAATCTGGAGGAAGCG 57.291 40.909 0.00 0.00 0.00 4.68
52 53 9.440773 AAAAATAAAATGAAATCTGGAGGAAGC 57.559 29.630 0.00 0.00 0.00 3.86
54 55 9.942850 GGAAAAATAAAATGAAATCTGGAGGAA 57.057 29.630 0.00 0.00 0.00 3.36
55 56 9.099071 TGGAAAAATAAAATGAAATCTGGAGGA 57.901 29.630 0.00 0.00 0.00 3.71
56 57 9.154847 GTGGAAAAATAAAATGAAATCTGGAGG 57.845 33.333 0.00 0.00 0.00 4.30
58 59 9.487790 GTGTGGAAAAATAAAATGAAATCTGGA 57.512 29.630 0.00 0.00 0.00 3.86
59 60 9.270640 TGTGTGGAAAAATAAAATGAAATCTGG 57.729 29.630 0.00 0.00 0.00 3.86
61 62 8.977505 CGTGTGTGGAAAAATAAAATGAAATCT 58.022 29.630 0.00 0.00 0.00 2.40
63 64 8.655651 ACGTGTGTGGAAAAATAAAATGAAAT 57.344 26.923 0.00 0.00 0.00 2.17
64 65 8.480643 AACGTGTGTGGAAAAATAAAATGAAA 57.519 26.923 0.00 0.00 0.00 2.69
65 66 8.480643 AAACGTGTGTGGAAAAATAAAATGAA 57.519 26.923 0.00 0.00 0.00 2.57
66 67 8.480643 AAAACGTGTGTGGAAAAATAAAATGA 57.519 26.923 0.00 0.00 0.00 2.57
67 68 8.993856 CAAAAACGTGTGTGGAAAAATAAAATG 58.006 29.630 0.00 0.00 0.00 2.32
68 69 8.178313 CCAAAAACGTGTGTGGAAAAATAAAAT 58.822 29.630 9.64 0.00 32.54 1.82
69 70 7.519002 CCAAAAACGTGTGTGGAAAAATAAAA 58.481 30.769 9.64 0.00 32.54 1.52
70 71 6.402226 GCCAAAAACGTGTGTGGAAAAATAAA 60.402 34.615 19.93 0.00 32.54 1.40
71 72 5.063564 GCCAAAAACGTGTGTGGAAAAATAA 59.936 36.000 19.93 0.00 32.54 1.40
72 73 4.567159 GCCAAAAACGTGTGTGGAAAAATA 59.433 37.500 19.93 0.00 32.54 1.40
73 74 3.372514 GCCAAAAACGTGTGTGGAAAAAT 59.627 39.130 19.93 0.00 32.54 1.82
74 75 2.737252 GCCAAAAACGTGTGTGGAAAAA 59.263 40.909 19.93 0.00 32.54 1.94
76 77 1.546476 AGCCAAAAACGTGTGTGGAAA 59.454 42.857 19.93 0.00 32.54 3.13
77 78 1.178276 AGCCAAAAACGTGTGTGGAA 58.822 45.000 19.93 0.00 32.54 3.53
78 79 1.178276 AAGCCAAAAACGTGTGTGGA 58.822 45.000 19.93 0.00 32.54 4.02
79 80 2.003196 AAAGCCAAAAACGTGTGTGG 57.997 45.000 10.98 10.98 0.00 4.17
83 84 5.656480 ACATCTAAAAAGCCAAAAACGTGT 58.344 33.333 0.00 0.00 0.00 4.49
84 85 6.582437 AACATCTAAAAAGCCAAAAACGTG 57.418 33.333 0.00 0.00 0.00 4.49
85 86 7.603963 AAAACATCTAAAAAGCCAAAAACGT 57.396 28.000 0.00 0.00 0.00 3.99
126 127 6.378710 AGCTAAGAAAGACTGGTGAAAAAC 57.621 37.500 0.00 0.00 0.00 2.43
128 129 7.404671 AAAAGCTAAGAAAGACTGGTGAAAA 57.595 32.000 0.00 0.00 0.00 2.29
129 130 6.238374 CGAAAAGCTAAGAAAGACTGGTGAAA 60.238 38.462 0.00 0.00 0.00 2.69
130 131 5.236478 CGAAAAGCTAAGAAAGACTGGTGAA 59.764 40.000 0.00 0.00 0.00 3.18
131 132 4.750098 CGAAAAGCTAAGAAAGACTGGTGA 59.250 41.667 0.00 0.00 0.00 4.02
133 134 4.750598 GTCGAAAAGCTAAGAAAGACTGGT 59.249 41.667 0.00 0.00 0.00 4.00
134 135 4.152580 GGTCGAAAAGCTAAGAAAGACTGG 59.847 45.833 0.00 0.00 0.00 4.00
135 136 4.750098 TGGTCGAAAAGCTAAGAAAGACTG 59.250 41.667 0.00 0.00 0.00 3.51
136 137 4.957296 TGGTCGAAAAGCTAAGAAAGACT 58.043 39.130 0.00 0.00 0.00 3.24
137 138 5.668558 TTGGTCGAAAAGCTAAGAAAGAC 57.331 39.130 0.00 0.00 0.00 3.01
138 139 6.877611 AATTGGTCGAAAAGCTAAGAAAGA 57.122 33.333 0.00 0.00 0.00 2.52
139 140 7.930513 AAAATTGGTCGAAAAGCTAAGAAAG 57.069 32.000 0.00 0.00 0.00 2.62
203 207 2.290008 TGCCTCTCACGGAAGCAAATTA 60.290 45.455 0.00 0.00 38.32 1.40
204 208 1.168714 GCCTCTCACGGAAGCAAATT 58.831 50.000 0.00 0.00 32.03 1.82
205 209 0.036732 TGCCTCTCACGGAAGCAAAT 59.963 50.000 0.00 0.00 38.32 2.32
245 249 1.686355 TCACGGAAGCAAAACCATGT 58.314 45.000 0.00 0.00 0.00 3.21
253 257 2.029743 GTGCCTTTCACGGAAGCAA 58.970 52.632 0.00 0.00 35.76 3.91
273 277 2.861462 TTGTTTTTGAGAGCAACGGG 57.139 45.000 0.00 0.00 32.79 5.28
299 305 8.335356 CACAGAAGAAAATTAGAGAAAACGTGA 58.665 33.333 0.00 0.00 0.00 4.35
302 308 8.765219 TCTCACAGAAGAAAATTAGAGAAAACG 58.235 33.333 0.00 0.00 0.00 3.60
312 319 3.499918 CGTGCCTCTCACAGAAGAAAATT 59.500 43.478 0.00 0.00 45.92 1.82
340 347 0.466189 ATCATGCCTCCCGCGAAAAT 60.466 50.000 8.23 0.00 42.08 1.82
356 363 1.533625 CTCCCACGGAAGCAAAATCA 58.466 50.000 0.00 0.00 0.00 2.57
358 365 1.250840 GCCTCCCACGGAAGCAAAAT 61.251 55.000 0.00 0.00 38.87 1.82
361 368 3.565214 TGCCTCCCACGGAAGCAA 61.565 61.111 1.42 0.00 44.91 3.91
379 389 1.078143 GTTTCCGAGAGCATGGCCT 60.078 57.895 3.32 0.00 0.00 5.19
388 398 7.916450 ACACATTTTTATTTTTCGTTTCCGAGA 59.084 29.630 0.00 0.00 45.24 4.04
389 399 8.056710 ACACATTTTTATTTTTCGTTTCCGAG 57.943 30.769 0.00 0.00 45.24 4.63
433 453 4.454728 GCAAAACCATGCCTCATAAGAA 57.545 40.909 0.00 0.00 40.49 2.52
472 492 7.391148 TTCAGAAGTTTTCCAATAGGCATAC 57.609 36.000 0.00 0.00 33.74 2.39
474 494 6.916360 TTTCAGAAGTTTTCCAATAGGCAT 57.084 33.333 0.00 0.00 33.74 4.40
506 546 1.981256 AAACCGAACCATGAGCACTT 58.019 45.000 0.00 0.00 0.00 3.16
507 548 1.981256 AAAACCGAACCATGAGCACT 58.019 45.000 0.00 0.00 0.00 4.40
600 644 2.876091 TCGCGTCGAGATCTTCAAAAT 58.124 42.857 5.77 0.00 0.00 1.82
622 666 8.021898 TCTTGAACCTTTTTCATCTTGGATTT 57.978 30.769 0.00 0.00 0.00 2.17
705 751 3.950397 TGTCGCAACCTATGGATTTTCT 58.050 40.909 0.00 0.00 0.00 2.52
712 758 1.732259 GTCACTTGTCGCAACCTATGG 59.268 52.381 0.00 0.00 0.00 2.74
714 760 1.710013 CGTCACTTGTCGCAACCTAT 58.290 50.000 0.00 0.00 0.00 2.57
715 761 3.188773 CGTCACTTGTCGCAACCTA 57.811 52.632 0.00 0.00 0.00 3.08
742 788 4.827692 TCAGGTTATGACAAATGCTACGT 58.172 39.130 0.00 0.00 31.12 3.57
745 791 7.994425 TCTTTTCAGGTTATGACAAATGCTA 57.006 32.000 0.00 0.00 37.77 3.49
747 793 7.315142 TCATCTTTTCAGGTTATGACAAATGC 58.685 34.615 0.00 0.00 37.77 3.56
757 803 8.924511 AAAATCACTCTCATCTTTTCAGGTTA 57.075 30.769 0.00 0.00 0.00 2.85
768 814 7.880105 ACTTTCTTCCAAAAATCACTCTCATC 58.120 34.615 0.00 0.00 0.00 2.92
782 828 4.528596 CAGAGAGGGACTACTTTCTTCCAA 59.471 45.833 0.00 0.00 41.55 3.53
785 831 3.118920 GCCAGAGAGGGACTACTTTCTTC 60.119 52.174 0.00 0.00 41.55 2.87
791 837 1.683629 CGAAGCCAGAGAGGGACTACT 60.684 57.143 0.00 0.00 41.55 2.57
792 838 0.741915 CGAAGCCAGAGAGGGACTAC 59.258 60.000 0.00 0.00 41.55 2.73
793 839 0.395862 CCGAAGCCAGAGAGGGACTA 60.396 60.000 0.00 0.00 41.55 2.59
795 841 2.726351 CCCGAAGCCAGAGAGGGAC 61.726 68.421 0.00 0.00 44.70 4.46
800 846 0.617535 TTCCATCCCGAAGCCAGAGA 60.618 55.000 0.00 0.00 0.00 3.10
801 847 0.253044 TTTCCATCCCGAAGCCAGAG 59.747 55.000 0.00 0.00 0.00 3.35
802 848 0.035439 GTTTCCATCCCGAAGCCAGA 60.035 55.000 0.00 0.00 0.00 3.86
803 849 0.035056 AGTTTCCATCCCGAAGCCAG 60.035 55.000 0.00 0.00 0.00 4.85
804 850 0.035439 GAGTTTCCATCCCGAAGCCA 60.035 55.000 0.00 0.00 0.00 4.75
805 851 0.253327 AGAGTTTCCATCCCGAAGCC 59.747 55.000 0.00 0.00 0.00 4.35
806 852 2.827652 CTAGAGTTTCCATCCCGAAGC 58.172 52.381 0.00 0.00 0.00 3.86
808 854 2.168521 CAGCTAGAGTTTCCATCCCGAA 59.831 50.000 0.00 0.00 0.00 4.30
809 855 1.757118 CAGCTAGAGTTTCCATCCCGA 59.243 52.381 0.00 0.00 0.00 5.14
810 856 1.482593 ACAGCTAGAGTTTCCATCCCG 59.517 52.381 0.00 0.00 0.00 5.14
811 857 2.501723 TCACAGCTAGAGTTTCCATCCC 59.498 50.000 0.00 0.00 0.00 3.85
812 858 3.526534 GTCACAGCTAGAGTTTCCATCC 58.473 50.000 0.00 0.00 0.00 3.51
813 859 3.526534 GGTCACAGCTAGAGTTTCCATC 58.473 50.000 0.00 0.00 0.00 3.51
814 860 2.093973 CGGTCACAGCTAGAGTTTCCAT 60.094 50.000 0.00 0.00 0.00 3.41
815 861 1.272490 CGGTCACAGCTAGAGTTTCCA 59.728 52.381 0.00 0.00 0.00 3.53
818 864 2.515854 TCTCGGTCACAGCTAGAGTTT 58.484 47.619 0.00 0.00 0.00 2.66
820 866 2.088423 CTTCTCGGTCACAGCTAGAGT 58.912 52.381 0.00 0.00 0.00 3.24
822 868 1.464734 CCTTCTCGGTCACAGCTAGA 58.535 55.000 0.00 0.00 0.00 2.43
823 869 0.457851 CCCTTCTCGGTCACAGCTAG 59.542 60.000 0.00 0.00 0.00 3.42
824 870 0.970937 CCCCTTCTCGGTCACAGCTA 60.971 60.000 0.00 0.00 0.00 3.32
827 873 2.982130 CCCCCTTCTCGGTCACAG 59.018 66.667 0.00 0.00 0.00 3.66
882 928 2.651701 CAACTAATCGATCGTCCTCCG 58.348 52.381 15.94 2.98 38.13 4.63
883 929 2.395654 GCAACTAATCGATCGTCCTCC 58.604 52.381 15.94 0.00 0.00 4.30
884 930 2.395654 GGCAACTAATCGATCGTCCTC 58.604 52.381 15.94 0.00 0.00 3.71
885 931 1.269102 CGGCAACTAATCGATCGTCCT 60.269 52.381 15.94 3.37 0.00 3.85
886 932 1.129326 CGGCAACTAATCGATCGTCC 58.871 55.000 15.94 4.13 0.00 4.79
887 933 2.115348 TCGGCAACTAATCGATCGTC 57.885 50.000 15.94 0.00 0.00 4.20
888 934 2.795175 ATCGGCAACTAATCGATCGT 57.205 45.000 15.94 0.00 39.05 3.73
889 935 2.588539 CGTATCGGCAACTAATCGATCG 59.411 50.000 9.36 9.36 41.82 3.69
890 936 2.915463 CCGTATCGGCAACTAATCGATC 59.085 50.000 0.00 0.00 41.17 3.69
891 937 2.942710 CCGTATCGGCAACTAATCGAT 58.057 47.619 0.00 0.00 41.17 3.59
892 938 2.410785 CCGTATCGGCAACTAATCGA 57.589 50.000 0.00 0.00 41.17 3.59
904 950 1.970092 AGAGTTCCTCCTCCGTATCG 58.030 55.000 0.00 0.00 31.53 2.92
905 951 4.036616 GTGTAAGAGTTCCTCCTCCGTATC 59.963 50.000 0.00 0.00 31.53 2.24
906 952 3.952967 GTGTAAGAGTTCCTCCTCCGTAT 59.047 47.826 0.00 0.00 31.53 3.06
907 953 3.350833 GTGTAAGAGTTCCTCCTCCGTA 58.649 50.000 0.00 0.00 31.53 4.02
908 954 2.169330 GTGTAAGAGTTCCTCCTCCGT 58.831 52.381 0.00 0.00 31.53 4.69
952 998 8.961634 CACAGGAATATATGTTAGCTAGCTAGA 58.038 37.037 25.15 14.90 0.00 2.43
964 1010 2.135139 CGCACGCACAGGAATATATGT 58.865 47.619 0.00 0.00 0.00 2.29
974 1020 4.046998 GACGACACGCACGCACAG 62.047 66.667 0.00 0.00 0.00 3.66
1061 1109 2.173669 ATCGCGTGCCAAATCCTCG 61.174 57.895 5.77 0.00 0.00 4.63
1089 1137 1.283793 CGTTGGCCTGCAGAAACAG 59.716 57.895 17.39 9.18 37.42 3.16
1129 1189 2.592102 ACATATCCCCATGTCCATGC 57.408 50.000 1.64 0.00 33.89 4.06
1130 1190 3.949754 GCATACATATCCCCATGTCCATG 59.050 47.826 0.14 0.14 39.77 3.66
1243 1303 0.817654 ATCCGAGATCGACTGCAACA 59.182 50.000 3.31 0.00 43.02 3.33
1299 1359 0.178973 TCCAACTCCTCCGTGACTGA 60.179 55.000 0.00 0.00 0.00 3.41
1301 1361 0.898320 CATCCAACTCCTCCGTGACT 59.102 55.000 0.00 0.00 0.00 3.41
1303 1363 0.895530 GTCATCCAACTCCTCCGTGA 59.104 55.000 0.00 0.00 0.00 4.35
1306 1366 0.101399 CTCGTCATCCAACTCCTCCG 59.899 60.000 0.00 0.00 0.00 4.63
1307 1367 1.475403 TCTCGTCATCCAACTCCTCC 58.525 55.000 0.00 0.00 0.00 4.30
1377 1476 3.516615 CCGTCTCATCAAGTTCCTCTTC 58.483 50.000 0.00 0.00 33.63 2.87
1466 1580 4.097361 GGGTTGGTCTCCGCCTCC 62.097 72.222 0.00 0.00 0.00 4.30
1467 1581 4.452733 CGGGTTGGTCTCCGCCTC 62.453 72.222 0.00 0.00 39.78 4.70
1471 1585 3.771160 CTCCCGGGTTGGTCTCCG 61.771 72.222 22.86 0.00 45.29 4.63
1499 1613 3.736482 CTCGTGCTCGGCGTAGTCC 62.736 68.421 6.85 0.00 37.69 3.85
1606 2518 6.152492 AGAGAAGCAAAAATCCCAGAAGATTC 59.848 38.462 0.00 0.00 35.40 2.52
1649 2829 1.634702 GACAGACGGATCAACAGAGC 58.365 55.000 0.00 0.00 0.00 4.09
1651 2831 0.526211 CGGACAGACGGATCAACAGA 59.474 55.000 0.00 0.00 0.00 3.41
1724 2956 4.503817 GGACTGATCAAGGCTGCATACATA 60.504 45.833 0.50 0.00 32.61 2.29
1728 2960 1.141657 GGGACTGATCAAGGCTGCATA 59.858 52.381 0.50 0.00 32.61 3.14
1877 3113 1.744368 AGCATCTCTGGCAGCAACG 60.744 57.895 10.34 0.00 0.00 4.10
1991 3227 5.757320 TGACTGCAAGAAGAAGAAGAAGAAG 59.243 40.000 0.00 0.00 37.43 2.85
1997 3233 5.055812 AGAACTGACTGCAAGAAGAAGAAG 58.944 41.667 0.00 0.00 37.43 2.85
2031 3275 9.862371 CACTATACTTCAGTGATCTAAACAAGT 57.138 33.333 0.00 0.00 45.10 3.16
2043 3287 9.190858 GAGCATTTAGATCACTATACTTCAGTG 57.809 37.037 0.00 0.00 43.92 3.66
2044 3288 9.142014 AGAGCATTTAGATCACTATACTTCAGT 57.858 33.333 0.00 0.00 34.30 3.41
2045 3289 9.979578 AAGAGCATTTAGATCACTATACTTCAG 57.020 33.333 0.00 0.00 34.30 3.02
2065 3309 6.779049 TCCCTCCGTAAAGTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
2088 3332 8.287503 CCGTATTTGCCAATTAATAACTACTCC 58.712 37.037 0.00 0.00 0.00 3.85
2172 3423 2.434359 GTGAACGGGCTTCTCGGG 60.434 66.667 0.00 0.00 0.00 5.14
2498 3770 4.616835 GCATGCTTTCTTCCAACTTTCGAT 60.617 41.667 11.37 0.00 0.00 3.59
2755 4037 3.940640 CCGCACGCCCATTCATCG 61.941 66.667 0.00 0.00 0.00 3.84
2770 4052 2.398554 CGTGGTGCCAAAGGATCCG 61.399 63.158 5.98 0.00 0.00 4.18
2792 4074 3.054655 TGAGGAAAAGGGAGGGATTTACG 60.055 47.826 0.00 0.00 0.00 3.18
2793 4075 4.586306 TGAGGAAAAGGGAGGGATTTAC 57.414 45.455 0.00 0.00 0.00 2.01
2796 4078 2.313041 CCTTGAGGAAAAGGGAGGGATT 59.687 50.000 0.00 0.00 42.68 3.01
2828 4110 8.508875 CATTTATGTACTACCTTTGTCGGTTTT 58.491 33.333 0.00 0.00 38.49 2.43
2849 4131 4.464008 GATGATCAGGAGGTTGCCATTTA 58.536 43.478 0.09 0.00 0.00 1.40
3099 4381 2.811410 AGCATTCCACATGTTCACCAT 58.189 42.857 0.00 0.00 0.00 3.55
3133 4415 0.461961 AGTGGCAGCTATCTCGGAAC 59.538 55.000 0.00 0.00 0.00 3.62
3194 4476 2.858344 CCTTGTCGTGAATACTAAGCGG 59.142 50.000 0.00 0.00 0.00 5.52
3220 4502 3.194116 ACAAAGATGCGCCAATTCATTCT 59.806 39.130 4.18 0.00 0.00 2.40
3246 4528 4.081642 TCTCCTAGTGGCACTACATTGTTC 60.082 45.833 22.96 0.00 0.00 3.18
3261 4543 6.893020 AATCCATAAACACCTTCTCCTAGT 57.107 37.500 0.00 0.00 0.00 2.57
3297 4579 0.400213 ACACAATCGGCAAGGAAGGA 59.600 50.000 0.00 0.00 0.00 3.36
3349 4631 3.384668 TCAAGAACACTCAAGAGCTTCG 58.615 45.455 0.00 0.00 0.00 3.79
3409 4692 9.791838 GTGTACACACAAAAGAAAAAGAAAAAG 57.208 29.630 21.14 0.00 45.75 2.27
3544 4830 6.701145 TGCAACCAGAATTAAGTTGTGTTA 57.299 33.333 13.30 0.84 42.25 2.41
3545 4831 5.590530 TGCAACCAGAATTAAGTTGTGTT 57.409 34.783 13.30 0.00 42.25 3.32
3580 4873 6.866770 TCAGCCGTGCAATATAAAGAGTATAC 59.133 38.462 0.00 0.00 0.00 1.47
3581 4874 6.988522 TCAGCCGTGCAATATAAAGAGTATA 58.011 36.000 0.00 0.00 0.00 1.47
3720 5568 3.580895 TGTAGGTGCACTAGTTTGATGGA 59.419 43.478 17.98 0.00 30.77 3.41
3726 5574 4.036380 GCTTGTTTGTAGGTGCACTAGTTT 59.964 41.667 17.98 0.43 30.77 2.66
3739 5587 2.303175 GGGTCCAACAGCTTGTTTGTA 58.697 47.619 0.00 0.00 38.77 2.41
3793 5641 7.670009 TTTGTTACCGCTGCTAGTTATTTAA 57.330 32.000 0.00 0.00 0.00 1.52
3794 5642 7.670009 TTTTGTTACCGCTGCTAGTTATTTA 57.330 32.000 0.00 0.00 0.00 1.40
3795 5643 6.563222 TTTTGTTACCGCTGCTAGTTATTT 57.437 33.333 0.00 0.00 0.00 1.40
3888 5736 1.606885 CCCTCCCATGCGCAATGTTT 61.607 55.000 17.11 0.00 34.11 2.83
3892 5740 2.440796 CACCCTCCCATGCGCAAT 60.441 61.111 17.11 0.00 0.00 3.56
3946 5794 2.432510 AGCCTTCTACAGTACATCCTGC 59.567 50.000 0.00 0.00 35.83 4.85
3947 5795 3.449018 ACAGCCTTCTACAGTACATCCTG 59.551 47.826 0.00 0.00 38.45 3.86
3956 5804 1.802960 CTGCACAACAGCCTTCTACAG 59.197 52.381 0.00 0.00 40.19 2.74
3957 5805 1.416030 TCTGCACAACAGCCTTCTACA 59.584 47.619 0.00 0.00 46.76 2.74
3959 5807 4.551702 TTATCTGCACAACAGCCTTCTA 57.448 40.909 0.00 0.00 46.76 2.10
3960 5808 3.423539 TTATCTGCACAACAGCCTTCT 57.576 42.857 0.00 0.00 46.76 2.85
3961 5809 4.156556 TCATTTATCTGCACAACAGCCTTC 59.843 41.667 0.00 0.00 46.76 3.46
3962 5810 4.081406 TCATTTATCTGCACAACAGCCTT 58.919 39.130 0.00 0.00 46.76 4.35
3963 5811 3.689347 TCATTTATCTGCACAACAGCCT 58.311 40.909 0.00 0.00 46.76 4.58
3964 5812 4.096833 TGATCATTTATCTGCACAACAGCC 59.903 41.667 0.00 0.00 46.76 4.85
3965 5813 5.239359 TGATCATTTATCTGCACAACAGC 57.761 39.130 0.00 0.00 46.76 4.40
4005 5853 7.042321 TCGTTTGATCCGGATGAATTATTACAC 60.042 37.037 24.82 11.75 0.00 2.90
4006 5854 6.987404 TCGTTTGATCCGGATGAATTATTACA 59.013 34.615 24.82 7.17 0.00 2.41
4029 5878 1.862201 TGCACCGTTGTAAGTTTCTCG 59.138 47.619 0.00 0.00 0.00 4.04
4269 7798 2.123382 GGGGAGGAGGTCTACGGG 60.123 72.222 0.00 0.00 0.00 5.28
4484 8016 4.415332 TCGTGAAGACGCTCGCCC 62.415 66.667 0.00 0.00 45.68 6.13
4515 8047 2.023414 GACACGACGGGCATCCCATA 62.023 60.000 0.00 0.00 45.83 2.74
4609 8141 0.912486 AAATCTTCCCTCCTCCCACG 59.088 55.000 0.00 0.00 0.00 4.94
4615 8147 1.065126 CCGCTCAAAATCTTCCCTCCT 60.065 52.381 0.00 0.00 0.00 3.69
4616 8148 1.383523 CCGCTCAAAATCTTCCCTCC 58.616 55.000 0.00 0.00 0.00 4.30
4636 8168 0.815615 CTAATCAGGCGGCCAAGACC 60.816 60.000 23.09 0.00 0.00 3.85
4662 8194 1.506718 CAGCTAGTCGTCGGCTCAA 59.493 57.895 0.73 0.00 33.74 3.02
4664 8196 2.278271 GCAGCTAGTCGTCGGCTC 60.278 66.667 0.73 0.00 33.74 4.70
4667 8199 3.812019 ACCGCAGCTAGTCGTCGG 61.812 66.667 11.40 11.40 45.04 4.79
4669 8201 1.080705 AACACCGCAGCTAGTCGTC 60.081 57.895 0.00 0.00 0.00 4.20
4670 8202 1.372997 CAACACCGCAGCTAGTCGT 60.373 57.895 0.00 0.00 0.00 4.34
4671 8203 0.458543 ATCAACACCGCAGCTAGTCG 60.459 55.000 0.00 0.00 0.00 4.18
4672 8204 1.134965 AGATCAACACCGCAGCTAGTC 60.135 52.381 0.00 0.00 0.00 2.59
4673 8205 0.898320 AGATCAACACCGCAGCTAGT 59.102 50.000 0.00 0.00 0.00 2.57
4674 8206 1.284657 CAGATCAACACCGCAGCTAG 58.715 55.000 0.00 0.00 0.00 3.42
4675 8207 0.608130 ACAGATCAACACCGCAGCTA 59.392 50.000 0.00 0.00 0.00 3.32
4681 8228 5.176223 AGTTAACGTTAACAGATCAACACCG 59.824 40.000 38.51 0.00 44.14 4.94
4689 8236 6.594159 CCCATTCTCAGTTAACGTTAACAGAT 59.406 38.462 38.51 24.73 44.14 2.90
4703 8250 8.811017 CAGAGTTCATATATACCCATTCTCAGT 58.189 37.037 0.00 0.00 0.00 3.41
4711 8258 7.785028 AGTTCACTCAGAGTTCATATATACCCA 59.215 37.037 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.