Multiple sequence alignment - TraesCS2A01G550000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G550000 chr2A 100.000 3750 0 0 1 3750 757555902 757552153 0.000000e+00 6926.0
1 TraesCS2A01G550000 chr2A 86.551 1331 162 14 1512 2835 624966639 624965319 0.000000e+00 1450.0
2 TraesCS2A01G550000 chr2A 92.222 90 7 0 3031 3120 757552782 757552693 1.090000e-25 128.0
3 TraesCS2A01G550000 chr2A 92.222 90 7 0 3121 3210 757552872 757552783 1.090000e-25 128.0
4 TraesCS2A01G550000 chr2B 94.932 3394 144 19 1 3379 768106290 768102910 0.000000e+00 5289.0
5 TraesCS2A01G550000 chr2B 95.809 2959 100 10 24 2980 768060445 768057509 0.000000e+00 4756.0
6 TraesCS2A01G550000 chr2B 87.690 1251 150 3 1512 2761 687206446 687205199 0.000000e+00 1454.0
7 TraesCS2A01G550000 chr2B 87.352 1265 151 7 1512 2772 566402135 566400876 0.000000e+00 1441.0
8 TraesCS2A01G550000 chr2B 79.680 1314 233 27 99 1404 687207795 687206508 0.000000e+00 917.0
9 TraesCS2A01G550000 chr2B 91.111 90 8 0 3121 3210 768103258 768103169 5.090000e-24 122.0
10 TraesCS2A01G550000 chr2D 96.150 2883 86 13 5 2880 626595434 626592570 0.000000e+00 4686.0
11 TraesCS2A01G550000 chr2D 86.702 1331 159 12 1512 2835 482381231 482379912 0.000000e+00 1461.0
12 TraesCS2A01G550000 chr2D 87.772 1243 148 3 1520 2761 572256177 572254938 0.000000e+00 1450.0
13 TraesCS2A01G550000 chr2D 86.759 1299 165 5 1511 2805 482349738 482348443 0.000000e+00 1439.0
14 TraesCS2A01G550000 chr2D 78.875 1316 238 33 98 1404 572257531 572256247 0.000000e+00 854.0
15 TraesCS2A01G550000 chr2D 97.419 155 2 2 2826 2980 626592585 626592433 2.870000e-66 263.0
16 TraesCS2A01G550000 chr2D 90.741 54 4 1 3388 3440 128486533 128486586 1.870000e-08 71.3
17 TraesCS2A01G550000 chr2D 87.302 63 6 2 3686 3748 197190107 197190047 1.870000e-08 71.3
18 TraesCS2A01G550000 chr2D 87.302 63 7 1 3686 3748 477303241 477303180 1.870000e-08 71.3
19 TraesCS2A01G550000 chr4B 73.259 359 77 17 3386 3731 651478987 651479339 3.060000e-21 113.0
20 TraesCS2A01G550000 chr3D 82.796 93 15 1 3389 3480 18659420 18659328 8.630000e-12 82.4
21 TraesCS2A01G550000 chr3D 84.810 79 11 1 3389 3466 529905182 529905260 1.120000e-10 78.7
22 TraesCS2A01G550000 chr6D 91.228 57 5 0 3692 3748 78599142 78599198 1.120000e-10 78.7
23 TraesCS2A01G550000 chr4D 91.228 57 5 0 3692 3748 396221383 396221327 1.120000e-10 78.7
24 TraesCS2A01G550000 chr3B 91.228 57 5 0 3692 3748 660087549 660087605 1.120000e-10 78.7
25 TraesCS2A01G550000 chr3B 74.766 214 33 14 3389 3596 816611962 816611764 4.020000e-10 76.8
26 TraesCS2A01G550000 chr3B 84.507 71 10 1 3388 3457 603632683 603632613 6.720000e-08 69.4
27 TraesCS2A01G550000 chr1A 92.453 53 4 0 3696 3748 232649493 232649441 4.020000e-10 76.8
28 TraesCS2A01G550000 chr5B 83.544 79 12 1 3388 3465 148495685 148495763 5.200000e-09 73.1
29 TraesCS2A01G550000 chr5B 95.000 40 1 1 3389 3427 493132792 493132831 1.120000e-05 62.1
30 TraesCS2A01G550000 chr7A 80.220 91 17 1 3386 3475 32874707 32874617 2.420000e-07 67.6
31 TraesCS2A01G550000 chr7A 73.438 192 44 7 3539 3727 543798823 543798636 8.690000e-07 65.8
32 TraesCS2A01G550000 chr7A 88.235 51 5 1 3388 3437 220539141 220539191 4.040000e-05 60.2
33 TraesCS2A01G550000 chr4A 83.824 68 9 2 3682 3748 529872089 529872023 3.130000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G550000 chr2A 757552153 757555902 3749 True 2394.0 6926 94.814667 1 3750 3 chr2A.!!$R2 3749
1 TraesCS2A01G550000 chr2A 624965319 624966639 1320 True 1450.0 1450 86.551000 1512 2835 1 chr2A.!!$R1 1323
2 TraesCS2A01G550000 chr2B 768057509 768060445 2936 True 4756.0 4756 95.809000 24 2980 1 chr2B.!!$R2 2956
3 TraesCS2A01G550000 chr2B 768102910 768106290 3380 True 2705.5 5289 93.021500 1 3379 2 chr2B.!!$R4 3378
4 TraesCS2A01G550000 chr2B 566400876 566402135 1259 True 1441.0 1441 87.352000 1512 2772 1 chr2B.!!$R1 1260
5 TraesCS2A01G550000 chr2B 687205199 687207795 2596 True 1185.5 1454 83.685000 99 2761 2 chr2B.!!$R3 2662
6 TraesCS2A01G550000 chr2D 626592433 626595434 3001 True 2474.5 4686 96.784500 5 2980 2 chr2D.!!$R6 2975
7 TraesCS2A01G550000 chr2D 482379912 482381231 1319 True 1461.0 1461 86.702000 1512 2835 1 chr2D.!!$R4 1323
8 TraesCS2A01G550000 chr2D 482348443 482349738 1295 True 1439.0 1439 86.759000 1511 2805 1 chr2D.!!$R3 1294
9 TraesCS2A01G550000 chr2D 572254938 572257531 2593 True 1152.0 1450 83.323500 98 2761 2 chr2D.!!$R5 2663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 700 1.040646 GTATCGGATGCTCCCAGACA 58.959 55.000 0.0 0.0 31.13 3.41 F
1498 1523 2.370189 CTCTCTCTCTCTCTCTCTCCCC 59.630 59.091 0.0 0.0 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 1616 1.133363 TTTGTCCCCAGAAGACGGAA 58.867 50.0 0.00 0.00 37.04 4.30 R
3433 3498 0.026027 CACGTCTAGACTACGCGGTC 59.974 60.0 20.34 9.46 44.04 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 60 3.996363 GCCTCAATTTTCATTCCACCAAC 59.004 43.478 0.00 0.00 0.00 3.77
161 164 5.934625 GTGTCACATTTATTGACTCTCCAGT 59.065 40.000 0.00 0.00 43.30 4.00
178 181 3.018856 CCAGTGGAAGAATATGCAAGCA 58.981 45.455 1.68 0.00 0.00 3.91
385 388 2.111384 GAGAGGCCATTCAGGAGTGTA 58.889 52.381 5.01 0.00 41.22 2.90
664 670 1.137086 CAGTCGGACCTAGTTGATGGG 59.863 57.143 4.14 0.00 35.12 4.00
673 679 2.503356 CCTAGTTGATGGGTCTTGCTCT 59.497 50.000 0.00 0.00 0.00 4.09
694 700 1.040646 GTATCGGATGCTCCCAGACA 58.959 55.000 0.00 0.00 31.13 3.41
939 945 8.267036 GATGCTGCAAAACAGAATAAGACCGA 62.267 42.308 6.36 0.00 45.52 4.69
1088 1098 2.409651 GCTCCGAGCTAGTGACGG 59.590 66.667 13.42 14.74 46.71 4.79
1473 1484 7.556275 CCAACTATGTTCTACTCTCTCTCTCTT 59.444 40.741 0.00 0.00 0.00 2.85
1496 1521 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
1498 1523 2.370189 CTCTCTCTCTCTCTCTCTCCCC 59.630 59.091 0.00 0.00 0.00 4.81
1712 1737 5.725822 AGGATGAGATCAGAGAAAGGTCTTT 59.274 40.000 0.00 0.00 32.80 2.52
1894 1919 6.318112 ACAGAAGAAGGAATTTGGGAAAGAT 58.682 36.000 0.00 0.00 0.00 2.40
2614 2639 4.595781 TCACTACATCCTTGGGTACAACTT 59.404 41.667 0.00 0.00 32.14 2.66
2630 2655 3.584406 ACAACTTGAGATGGAGATGGACA 59.416 43.478 0.00 0.00 0.00 4.02
2830 2859 6.052405 ACCTCGGTACCACATGTATTTTTA 57.948 37.500 13.54 0.00 0.00 1.52
2964 3029 7.814587 TGTGTGATGTATGTTCAACAACAAAAA 59.185 29.630 0.00 0.00 45.78 1.94
3021 3086 9.479549 AGACCCAAATGAAATATACAATTCACT 57.520 29.630 0.00 0.00 38.29 3.41
3039 3104 2.480037 CACTCACGCATGCTACTTGAAA 59.520 45.455 17.13 0.00 0.00 2.69
3063 3128 1.967066 ACTATCTCCGATCCAAGGCAG 59.033 52.381 0.00 0.00 0.00 4.85
3082 3147 8.517878 CAAGGCAGATCCTATTATATTGGTTTG 58.482 37.037 0.00 0.00 46.94 2.93
3085 3150 8.860088 GGCAGATCCTATTATATTGGTTTGTTT 58.140 33.333 0.00 0.00 0.00 2.83
3164 3229 5.114780 CGATCCAAGGCAGATCCTATTATG 58.885 45.833 6.61 0.00 46.94 1.90
3175 3240 7.489113 GGCAGATCCTATTATGTTTGTTTGTTG 59.511 37.037 0.00 0.00 0.00 3.33
3253 3318 4.516365 AGTAGTTGTCCCTACTTCGTTG 57.484 45.455 0.00 0.00 44.01 4.10
3351 3416 2.489329 AGCAATGCACATTCACACCTAC 59.511 45.455 8.35 0.00 0.00 3.18
3379 3444 3.472283 TGAACCAATTGTGCATTTGCT 57.528 38.095 4.43 0.00 42.66 3.91
3380 3445 3.806380 TGAACCAATTGTGCATTTGCTT 58.194 36.364 4.43 0.00 42.66 3.91
3381 3446 4.197750 TGAACCAATTGTGCATTTGCTTT 58.802 34.783 4.43 0.00 42.66 3.51
3382 3447 4.639310 TGAACCAATTGTGCATTTGCTTTT 59.361 33.333 4.43 0.00 42.66 2.27
3383 3448 4.816786 ACCAATTGTGCATTTGCTTTTC 57.183 36.364 4.43 0.00 42.66 2.29
3384 3449 4.453751 ACCAATTGTGCATTTGCTTTTCT 58.546 34.783 4.43 0.00 42.66 2.52
3385 3450 4.273969 ACCAATTGTGCATTTGCTTTTCTG 59.726 37.500 4.43 0.00 42.66 3.02
3386 3451 4.215965 CAATTGTGCATTTGCTTTTCTGC 58.784 39.130 3.94 0.00 42.66 4.26
3387 3452 1.868469 TGTGCATTTGCTTTTCTGCC 58.132 45.000 3.94 0.00 42.66 4.85
3388 3453 1.413445 TGTGCATTTGCTTTTCTGCCT 59.587 42.857 3.94 0.00 42.66 4.75
3389 3454 2.627221 TGTGCATTTGCTTTTCTGCCTA 59.373 40.909 3.94 0.00 42.66 3.93
3390 3455 3.069300 TGTGCATTTGCTTTTCTGCCTAA 59.931 39.130 3.94 0.00 42.66 2.69
3391 3456 3.676646 GTGCATTTGCTTTTCTGCCTAAG 59.323 43.478 3.94 0.00 42.66 2.18
3392 3457 3.256558 GCATTTGCTTTTCTGCCTAAGG 58.743 45.455 0.00 0.00 38.21 2.69
3393 3458 3.853475 CATTTGCTTTTCTGCCTAAGGG 58.147 45.455 0.00 0.00 0.00 3.95
3404 3469 3.386543 CCTAAGGGCATCTCCAACG 57.613 57.895 0.00 0.00 36.21 4.10
3405 3470 0.815615 CCTAAGGGCATCTCCAACGC 60.816 60.000 0.00 0.00 36.21 4.84
3406 3471 1.153449 TAAGGGCATCTCCAACGCG 60.153 57.895 3.53 3.53 36.21 6.01
3407 3472 2.587322 TAAGGGCATCTCCAACGCGG 62.587 60.000 12.47 0.00 36.21 6.46
3408 3473 4.467084 GGGCATCTCCAACGCGGA 62.467 66.667 12.47 0.00 43.61 5.54
3409 3474 3.195698 GGCATCTCCAACGCGGAC 61.196 66.667 12.47 0.00 39.64 4.79
3410 3475 3.195698 GCATCTCCAACGCGGACC 61.196 66.667 12.47 0.00 39.64 4.46
3411 3476 2.511600 CATCTCCAACGCGGACCC 60.512 66.667 12.47 0.00 39.64 4.46
3412 3477 2.683933 ATCTCCAACGCGGACCCT 60.684 61.111 12.47 0.00 39.64 4.34
3413 3478 2.722201 ATCTCCAACGCGGACCCTC 61.722 63.158 12.47 0.00 39.64 4.30
3414 3479 3.691342 CTCCAACGCGGACCCTCA 61.691 66.667 12.47 0.00 39.64 3.86
3415 3480 3.234630 CTCCAACGCGGACCCTCAA 62.235 63.158 12.47 0.00 39.64 3.02
3416 3481 3.047877 CCAACGCGGACCCTCAAC 61.048 66.667 12.47 0.00 36.56 3.18
3417 3482 3.047877 CAACGCGGACCCTCAACC 61.048 66.667 12.47 0.00 0.00 3.77
3426 3491 4.169696 CCCTCAACCGCCCGCATA 62.170 66.667 0.00 0.00 0.00 3.14
3427 3492 2.111043 CCTCAACCGCCCGCATAT 59.889 61.111 0.00 0.00 0.00 1.78
3428 3493 2.253758 CCTCAACCGCCCGCATATG 61.254 63.158 0.00 0.00 0.00 1.78
3429 3494 1.523711 CTCAACCGCCCGCATATGT 60.524 57.895 4.29 0.00 0.00 2.29
3430 3495 1.498865 CTCAACCGCCCGCATATGTC 61.499 60.000 4.29 0.00 0.00 3.06
3431 3496 1.523711 CAACCGCCCGCATATGTCT 60.524 57.895 4.29 0.00 0.00 3.41
3432 3497 0.249699 CAACCGCCCGCATATGTCTA 60.250 55.000 4.29 0.00 0.00 2.59
3433 3498 0.033504 AACCGCCCGCATATGTCTAG 59.966 55.000 4.29 0.00 0.00 2.43
3434 3499 0.826256 ACCGCCCGCATATGTCTAGA 60.826 55.000 4.29 0.00 0.00 2.43
3435 3500 0.388649 CCGCCCGCATATGTCTAGAC 60.389 60.000 16.32 16.32 0.00 2.59
3436 3501 0.388649 CGCCCGCATATGTCTAGACC 60.389 60.000 20.11 3.32 0.00 3.85
3437 3502 0.388649 GCCCGCATATGTCTAGACCG 60.389 60.000 20.11 14.72 0.00 4.79
3438 3503 0.388649 CCCGCATATGTCTAGACCGC 60.389 60.000 20.11 15.15 0.00 5.68
3439 3504 0.729478 CCGCATATGTCTAGACCGCG 60.729 60.000 26.24 26.24 40.83 6.46
3440 3505 0.040336 CGCATATGTCTAGACCGCGT 60.040 55.000 25.47 12.51 36.69 6.01
3441 3506 1.196127 CGCATATGTCTAGACCGCGTA 59.804 52.381 25.47 13.84 36.69 4.42
3442 3507 2.725145 CGCATATGTCTAGACCGCGTAG 60.725 54.545 25.47 12.56 36.69 3.51
3443 3508 2.225963 GCATATGTCTAGACCGCGTAGT 59.774 50.000 20.11 0.00 0.00 2.73
3444 3509 3.667430 GCATATGTCTAGACCGCGTAGTC 60.667 52.174 20.11 6.36 37.01 2.59
3446 3511 2.967599 TGTCTAGACCGCGTAGTCTA 57.032 50.000 20.11 19.65 45.31 2.59
3450 3515 1.845266 TAGACCGCGTAGTCTAGACG 58.155 55.000 17.74 7.64 45.31 4.18
3451 3516 0.108424 AGACCGCGTAGTCTAGACGT 60.108 55.000 17.07 7.82 45.31 4.34
3452 3517 2.331032 AGACCGCGTAGTCTAGACGTG 61.331 57.143 17.07 12.41 45.31 4.49
3453 3518 0.671781 ACCGCGTAGTCTAGACGTGT 60.672 55.000 17.07 2.80 46.62 4.49
3454 3519 0.445436 CCGCGTAGTCTAGACGTGTT 59.555 55.000 17.07 2.42 46.62 3.32
3455 3520 1.521411 CGCGTAGTCTAGACGTGTTG 58.479 55.000 17.07 8.02 43.86 3.33
3456 3521 1.136141 CGCGTAGTCTAGACGTGTTGT 60.136 52.381 17.07 1.30 43.86 3.32
3457 3522 2.092681 CGCGTAGTCTAGACGTGTTGTA 59.907 50.000 17.07 0.30 43.86 2.41
3458 3523 3.411751 GCGTAGTCTAGACGTGTTGTAC 58.588 50.000 17.07 11.50 42.31 2.90
3459 3524 3.726190 GCGTAGTCTAGACGTGTTGTACC 60.726 52.174 17.07 4.45 42.31 3.34
3460 3525 3.433274 CGTAGTCTAGACGTGTTGTACCA 59.567 47.826 17.07 0.00 35.58 3.25
3461 3526 4.093998 CGTAGTCTAGACGTGTTGTACCAT 59.906 45.833 17.07 0.00 35.58 3.55
3462 3527 4.698583 AGTCTAGACGTGTTGTACCATC 57.301 45.455 17.07 0.00 36.20 3.51
3463 3528 3.442977 AGTCTAGACGTGTTGTACCATCC 59.557 47.826 17.07 0.00 36.20 3.51
3464 3529 3.192001 GTCTAGACGTGTTGTACCATCCA 59.808 47.826 7.22 0.00 0.00 3.41
3465 3530 3.827876 TCTAGACGTGTTGTACCATCCAA 59.172 43.478 0.00 0.00 0.00 3.53
3466 3531 3.695830 AGACGTGTTGTACCATCCAAT 57.304 42.857 0.00 0.00 0.00 3.16
3467 3532 3.334691 AGACGTGTTGTACCATCCAATG 58.665 45.455 0.00 0.00 0.00 2.82
3468 3533 1.810151 ACGTGTTGTACCATCCAATGC 59.190 47.619 0.00 0.00 0.00 3.56
3469 3534 1.202020 CGTGTTGTACCATCCAATGCG 60.202 52.381 0.00 0.00 0.00 4.73
3470 3535 1.132262 GTGTTGTACCATCCAATGCGG 59.868 52.381 0.00 0.00 0.00 5.69
3471 3536 1.271652 TGTTGTACCATCCAATGCGGT 60.272 47.619 0.00 0.00 36.79 5.68
3472 3537 1.400494 GTTGTACCATCCAATGCGGTC 59.600 52.381 0.00 0.00 34.12 4.79
3473 3538 0.107410 TGTACCATCCAATGCGGTCC 60.107 55.000 0.00 0.00 34.12 4.46
3474 3539 0.180406 GTACCATCCAATGCGGTCCT 59.820 55.000 0.00 0.00 34.12 3.85
3475 3540 0.180171 TACCATCCAATGCGGTCCTG 59.820 55.000 0.00 0.00 34.12 3.86
3476 3541 1.077501 CCATCCAATGCGGTCCTGT 60.078 57.895 0.00 0.00 35.57 4.00
3477 3542 1.378882 CCATCCAATGCGGTCCTGTG 61.379 60.000 0.00 0.00 35.57 3.66
3478 3543 0.677731 CATCCAATGCGGTCCTGTGT 60.678 55.000 0.00 0.00 35.57 3.72
3479 3544 0.392998 ATCCAATGCGGTCCTGTGTC 60.393 55.000 0.00 0.00 35.57 3.67
3480 3545 1.302431 CCAATGCGGTCCTGTGTCA 60.302 57.895 0.00 0.00 0.00 3.58
3481 3546 0.888736 CCAATGCGGTCCTGTGTCAA 60.889 55.000 0.00 0.00 0.00 3.18
3482 3547 1.167851 CAATGCGGTCCTGTGTCAAT 58.832 50.000 0.00 0.00 0.00 2.57
3483 3548 1.131126 CAATGCGGTCCTGTGTCAATC 59.869 52.381 0.00 0.00 0.00 2.67
3484 3549 0.392998 ATGCGGTCCTGTGTCAATCC 60.393 55.000 0.00 0.00 0.00 3.01
3485 3550 1.003839 GCGGTCCTGTGTCAATCCA 60.004 57.895 0.00 0.00 0.00 3.41
3486 3551 0.605319 GCGGTCCTGTGTCAATCCAA 60.605 55.000 0.00 0.00 0.00 3.53
3487 3552 1.156736 CGGTCCTGTGTCAATCCAAC 58.843 55.000 0.00 0.00 0.00 3.77
3488 3553 1.156736 GGTCCTGTGTCAATCCAACG 58.843 55.000 0.00 0.00 0.00 4.10
3489 3554 1.270625 GGTCCTGTGTCAATCCAACGA 60.271 52.381 0.00 0.00 0.00 3.85
3490 3555 2.069273 GTCCTGTGTCAATCCAACGAG 58.931 52.381 0.00 0.00 0.00 4.18
3491 3556 1.967779 TCCTGTGTCAATCCAACGAGA 59.032 47.619 0.00 0.00 0.00 4.04
3492 3557 2.029020 TCCTGTGTCAATCCAACGAGAG 60.029 50.000 0.00 0.00 0.00 3.20
3493 3558 2.341257 CTGTGTCAATCCAACGAGAGG 58.659 52.381 0.00 0.00 0.00 3.69
3494 3559 1.691976 TGTGTCAATCCAACGAGAGGT 59.308 47.619 0.00 0.00 0.00 3.85
3495 3560 2.288825 TGTGTCAATCCAACGAGAGGTC 60.289 50.000 0.00 0.00 0.00 3.85
3496 3561 1.275291 TGTCAATCCAACGAGAGGTCC 59.725 52.381 0.00 0.00 0.00 4.46
3497 3562 0.530744 TCAATCCAACGAGAGGTCCG 59.469 55.000 0.00 0.00 0.00 4.79
3498 3563 0.460284 CAATCCAACGAGAGGTCCGG 60.460 60.000 0.00 0.00 0.00 5.14
3499 3564 0.613853 AATCCAACGAGAGGTCCGGA 60.614 55.000 0.00 0.00 35.33 5.14
3500 3565 0.397254 ATCCAACGAGAGGTCCGGAT 60.397 55.000 7.81 0.00 36.50 4.18
3501 3566 1.141881 CCAACGAGAGGTCCGGATG 59.858 63.158 7.81 0.00 0.00 3.51
3502 3567 1.605058 CCAACGAGAGGTCCGGATGT 61.605 60.000 7.81 0.00 0.00 3.06
3503 3568 1.100510 CAACGAGAGGTCCGGATGTA 58.899 55.000 7.81 0.00 0.00 2.29
3504 3569 1.101331 AACGAGAGGTCCGGATGTAC 58.899 55.000 7.81 0.00 0.00 2.90
3505 3570 0.255318 ACGAGAGGTCCGGATGTACT 59.745 55.000 7.81 3.75 0.00 2.73
3506 3571 1.340795 ACGAGAGGTCCGGATGTACTT 60.341 52.381 7.81 0.00 0.00 2.24
3507 3572 1.749634 CGAGAGGTCCGGATGTACTTT 59.250 52.381 7.81 0.00 0.00 2.66
3508 3573 2.165845 CGAGAGGTCCGGATGTACTTTT 59.834 50.000 7.81 0.00 0.00 2.27
3509 3574 3.368116 CGAGAGGTCCGGATGTACTTTTT 60.368 47.826 7.81 0.00 0.00 1.94
3510 3575 4.182339 GAGAGGTCCGGATGTACTTTTTC 58.818 47.826 7.81 0.99 0.00 2.29
3511 3576 3.838903 AGAGGTCCGGATGTACTTTTTCT 59.161 43.478 7.81 0.00 0.00 2.52
3512 3577 5.021458 AGAGGTCCGGATGTACTTTTTCTA 58.979 41.667 7.81 0.00 0.00 2.10
3513 3578 5.127356 AGAGGTCCGGATGTACTTTTTCTAG 59.873 44.000 7.81 0.00 0.00 2.43
3514 3579 3.869832 GGTCCGGATGTACTTTTTCTAGC 59.130 47.826 7.81 0.00 0.00 3.42
3515 3580 4.501071 GTCCGGATGTACTTTTTCTAGCA 58.499 43.478 7.81 0.00 0.00 3.49
3516 3581 4.933400 GTCCGGATGTACTTTTTCTAGCAA 59.067 41.667 7.81 0.00 0.00 3.91
3517 3582 5.410439 GTCCGGATGTACTTTTTCTAGCAAA 59.590 40.000 7.81 0.00 0.00 3.68
3518 3583 5.410439 TCCGGATGTACTTTTTCTAGCAAAC 59.590 40.000 0.00 0.00 0.00 2.93
3519 3584 5.411669 CCGGATGTACTTTTTCTAGCAAACT 59.588 40.000 0.00 0.00 0.00 2.66
3520 3585 6.307155 CGGATGTACTTTTTCTAGCAAACTG 58.693 40.000 0.00 0.00 0.00 3.16
3521 3586 6.612306 GGATGTACTTTTTCTAGCAAACTGG 58.388 40.000 0.00 0.00 0.00 4.00
3522 3587 6.430000 GGATGTACTTTTTCTAGCAAACTGGA 59.570 38.462 0.00 0.00 0.00 3.86
3523 3588 6.861065 TGTACTTTTTCTAGCAAACTGGAG 57.139 37.500 0.00 0.00 34.53 3.86
3524 3589 6.588204 TGTACTTTTTCTAGCAAACTGGAGA 58.412 36.000 0.00 0.00 34.53 3.71
3525 3590 7.051623 TGTACTTTTTCTAGCAAACTGGAGAA 58.948 34.615 0.00 0.00 34.53 2.87
3526 3591 7.554835 TGTACTTTTTCTAGCAAACTGGAGAAA 59.445 33.333 0.00 0.00 35.84 2.52
3528 3593 7.032377 CTTTTTCTAGCAAACTGGAGAAAGT 57.968 36.000 11.74 0.00 44.15 2.66
3529 3594 6.377327 TTTTCTAGCAAACTGGAGAAAGTG 57.623 37.500 0.00 0.00 38.70 3.16
3530 3595 4.008074 TCTAGCAAACTGGAGAAAGTGG 57.992 45.455 0.00 0.00 0.00 4.00
3531 3596 1.986882 AGCAAACTGGAGAAAGTGGG 58.013 50.000 0.00 0.00 0.00 4.61
3532 3597 0.961753 GCAAACTGGAGAAAGTGGGG 59.038 55.000 0.00 0.00 0.00 4.96
3533 3598 1.754201 GCAAACTGGAGAAAGTGGGGT 60.754 52.381 0.00 0.00 0.00 4.95
3534 3599 2.666317 CAAACTGGAGAAAGTGGGGTT 58.334 47.619 0.00 0.00 0.00 4.11
3535 3600 2.362077 CAAACTGGAGAAAGTGGGGTTG 59.638 50.000 0.00 0.00 0.00 3.77
3536 3601 0.478507 ACTGGAGAAAGTGGGGTTGG 59.521 55.000 0.00 0.00 0.00 3.77
3537 3602 0.251341 CTGGAGAAAGTGGGGTTGGG 60.251 60.000 0.00 0.00 0.00 4.12
3538 3603 1.606601 GGAGAAAGTGGGGTTGGGC 60.607 63.158 0.00 0.00 0.00 5.36
3539 3604 1.460699 GAGAAAGTGGGGTTGGGCT 59.539 57.895 0.00 0.00 0.00 5.19
3540 3605 0.178961 GAGAAAGTGGGGTTGGGCTT 60.179 55.000 0.00 0.00 0.00 4.35
3541 3606 0.264657 AGAAAGTGGGGTTGGGCTTT 59.735 50.000 0.00 0.00 34.34 3.51
3542 3607 0.392706 GAAAGTGGGGTTGGGCTTTG 59.607 55.000 0.00 0.00 32.14 2.77
3543 3608 1.695114 AAAGTGGGGTTGGGCTTTGC 61.695 55.000 0.00 0.00 30.97 3.68
3544 3609 3.989787 GTGGGGTTGGGCTTTGCG 61.990 66.667 0.00 0.00 0.00 4.85
3563 3628 4.980805 GCGACCAGGACGTTGCCA 62.981 66.667 13.01 0.00 37.20 4.92
3564 3629 3.041940 CGACCAGGACGTTGCCAC 61.042 66.667 2.81 0.00 0.00 5.01
3595 3660 4.659172 CGCCCTGGCCCACTGAAA 62.659 66.667 0.00 0.00 37.98 2.69
3596 3661 2.203625 GCCCTGGCCCACTGAAAA 60.204 61.111 0.00 0.00 34.56 2.29
3597 3662 2.574018 GCCCTGGCCCACTGAAAAC 61.574 63.158 0.00 0.00 34.56 2.43
3598 3663 1.908299 CCCTGGCCCACTGAAAACC 60.908 63.158 0.00 0.00 0.00 3.27
3599 3664 1.908299 CCTGGCCCACTGAAAACCC 60.908 63.158 0.00 0.00 0.00 4.11
3600 3665 2.203422 TGGCCCACTGAAAACCCG 60.203 61.111 0.00 0.00 0.00 5.28
3601 3666 2.203437 GGCCCACTGAAAACCCGT 60.203 61.111 0.00 0.00 0.00 5.28
3602 3667 2.265904 GGCCCACTGAAAACCCGTC 61.266 63.158 0.00 0.00 0.00 4.79
3603 3668 1.228154 GCCCACTGAAAACCCGTCT 60.228 57.895 0.00 0.00 0.00 4.18
3604 3669 0.822121 GCCCACTGAAAACCCGTCTT 60.822 55.000 0.00 0.00 0.00 3.01
3605 3670 1.235724 CCCACTGAAAACCCGTCTTC 58.764 55.000 0.00 0.00 0.00 2.87
3606 3671 1.235724 CCACTGAAAACCCGTCTTCC 58.764 55.000 0.00 0.00 0.00 3.46
3607 3672 1.202770 CCACTGAAAACCCGTCTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
3608 3673 2.143925 CACTGAAAACCCGTCTTCCTC 58.856 52.381 0.00 0.00 0.00 3.71
3609 3674 2.047830 ACTGAAAACCCGTCTTCCTCT 58.952 47.619 0.00 0.00 0.00 3.69
3610 3675 2.037381 ACTGAAAACCCGTCTTCCTCTC 59.963 50.000 0.00 0.00 0.00 3.20
3611 3676 1.346722 TGAAAACCCGTCTTCCTCTCC 59.653 52.381 0.00 0.00 0.00 3.71
3612 3677 0.691332 AAAACCCGTCTTCCTCTCCC 59.309 55.000 0.00 0.00 0.00 4.30
3613 3678 1.542187 AAACCCGTCTTCCTCTCCCG 61.542 60.000 0.00 0.00 0.00 5.14
3614 3679 3.839432 CCCGTCTTCCTCTCCCGC 61.839 72.222 0.00 0.00 0.00 6.13
3615 3680 4.194720 CCGTCTTCCTCTCCCGCG 62.195 72.222 0.00 0.00 0.00 6.46
3616 3681 3.441290 CGTCTTCCTCTCCCGCGT 61.441 66.667 4.92 0.00 0.00 6.01
3617 3682 2.182030 GTCTTCCTCTCCCGCGTG 59.818 66.667 4.92 0.00 0.00 5.34
3618 3683 2.282958 TCTTCCTCTCCCGCGTGT 60.283 61.111 4.92 0.00 0.00 4.49
3619 3684 2.125912 CTTCCTCTCCCGCGTGTG 60.126 66.667 4.92 0.00 0.00 3.82
3620 3685 2.915659 TTCCTCTCCCGCGTGTGT 60.916 61.111 4.92 0.00 0.00 3.72
3621 3686 2.436087 CTTCCTCTCCCGCGTGTGTT 62.436 60.000 4.92 0.00 0.00 3.32
3622 3687 2.030562 CCTCTCCCGCGTGTGTTT 59.969 61.111 4.92 0.00 0.00 2.83
3623 3688 1.597027 CCTCTCCCGCGTGTGTTTT 60.597 57.895 4.92 0.00 0.00 2.43
3624 3689 1.566018 CCTCTCCCGCGTGTGTTTTC 61.566 60.000 4.92 0.00 0.00 2.29
3625 3690 0.878523 CTCTCCCGCGTGTGTTTTCA 60.879 55.000 4.92 0.00 0.00 2.69
3635 3700 2.824489 TGTTTTCACACGGCGCCA 60.824 55.556 28.98 2.40 0.00 5.69
3636 3701 2.051345 GTTTTCACACGGCGCCAG 60.051 61.111 28.98 20.85 0.00 4.85
3637 3702 3.959975 TTTTCACACGGCGCCAGC 61.960 61.111 28.98 0.00 44.18 4.85
3638 3703 4.927782 TTTCACACGGCGCCAGCT 62.928 61.111 28.98 4.56 44.37 4.24
3639 3704 2.997952 TTTTCACACGGCGCCAGCTA 62.998 55.000 28.98 6.95 44.37 3.32
3640 3705 3.932580 TTCACACGGCGCCAGCTAG 62.933 63.158 28.98 12.44 44.37 3.42
3641 3706 4.742201 CACACGGCGCCAGCTAGT 62.742 66.667 28.98 13.21 44.37 2.57
3642 3707 4.436998 ACACGGCGCCAGCTAGTC 62.437 66.667 28.98 0.00 44.37 2.59
3645 3710 3.884350 CGGCGCCAGCTAGTCGTA 61.884 66.667 28.98 0.00 44.37 3.43
3646 3711 2.728817 GGCGCCAGCTAGTCGTAT 59.271 61.111 24.80 0.00 44.37 3.06
3647 3712 1.067582 GGCGCCAGCTAGTCGTATT 59.932 57.895 24.80 0.00 44.37 1.89
3648 3713 0.940047 GGCGCCAGCTAGTCGTATTC 60.940 60.000 24.80 0.00 44.37 1.75
3649 3714 0.248907 GCGCCAGCTAGTCGTATTCA 60.249 55.000 0.00 0.00 41.01 2.57
3650 3715 1.603172 GCGCCAGCTAGTCGTATTCAT 60.603 52.381 0.00 0.00 41.01 2.57
3651 3716 2.054363 CGCCAGCTAGTCGTATTCATG 58.946 52.381 0.00 0.00 0.00 3.07
3652 3717 1.795286 GCCAGCTAGTCGTATTCATGC 59.205 52.381 0.00 0.00 0.00 4.06
3653 3718 2.546795 GCCAGCTAGTCGTATTCATGCT 60.547 50.000 0.00 0.00 0.00 3.79
3654 3719 3.055591 CCAGCTAGTCGTATTCATGCTG 58.944 50.000 0.00 0.00 43.92 4.41
3655 3720 2.474359 CAGCTAGTCGTATTCATGCTGC 59.526 50.000 0.00 0.00 39.60 5.25
3656 3721 2.363680 AGCTAGTCGTATTCATGCTGCT 59.636 45.455 0.00 0.00 0.00 4.24
3657 3722 3.570125 AGCTAGTCGTATTCATGCTGCTA 59.430 43.478 0.00 0.00 0.00 3.49
3658 3723 4.219507 AGCTAGTCGTATTCATGCTGCTAT 59.780 41.667 0.00 0.00 0.00 2.97
3659 3724 5.416013 AGCTAGTCGTATTCATGCTGCTATA 59.584 40.000 0.00 0.00 0.00 1.31
3660 3725 5.741510 GCTAGTCGTATTCATGCTGCTATAG 59.258 44.000 0.00 0.00 0.00 1.31
3661 3726 5.966742 AGTCGTATTCATGCTGCTATAGA 57.033 39.130 3.21 0.00 0.00 1.98
3662 3727 5.948588 AGTCGTATTCATGCTGCTATAGAG 58.051 41.667 3.21 0.00 0.00 2.43
3663 3728 5.098893 GTCGTATTCATGCTGCTATAGAGG 58.901 45.833 3.21 0.00 0.00 3.69
3664 3729 4.158579 TCGTATTCATGCTGCTATAGAGGG 59.841 45.833 3.21 0.00 0.00 4.30
3665 3730 3.996921 ATTCATGCTGCTATAGAGGGG 57.003 47.619 3.21 0.00 0.00 4.79
3666 3731 2.702270 TCATGCTGCTATAGAGGGGA 57.298 50.000 3.21 0.00 0.00 4.81
3667 3732 2.251818 TCATGCTGCTATAGAGGGGAC 58.748 52.381 3.21 0.00 0.00 4.46
3668 3733 1.067283 CATGCTGCTATAGAGGGGACG 60.067 57.143 3.21 0.00 0.00 4.79
3669 3734 1.290639 GCTGCTATAGAGGGGACGC 59.709 63.158 3.21 0.00 0.00 5.19
3670 3735 1.182385 GCTGCTATAGAGGGGACGCT 61.182 60.000 3.21 0.00 45.08 5.07
3671 3736 1.333177 CTGCTATAGAGGGGACGCTT 58.667 55.000 3.21 0.00 42.15 4.68
3672 3737 1.271102 CTGCTATAGAGGGGACGCTTC 59.729 57.143 3.21 0.00 42.15 3.86
3673 3738 0.241481 GCTATAGAGGGGACGCTTCG 59.759 60.000 3.21 0.00 42.15 3.79
3674 3739 0.241481 CTATAGAGGGGACGCTTCGC 59.759 60.000 0.00 0.00 42.15 4.70
3675 3740 0.466739 TATAGAGGGGACGCTTCGCA 60.467 55.000 9.50 0.00 42.15 5.10
3676 3741 1.327690 ATAGAGGGGACGCTTCGCAA 61.328 55.000 9.50 0.00 42.15 4.85
3677 3742 1.327690 TAGAGGGGACGCTTCGCAAT 61.328 55.000 9.50 0.00 42.15 3.56
3678 3743 2.436646 AGGGGACGCTTCGCAATG 60.437 61.111 9.50 0.00 36.39 2.82
3679 3744 2.435938 GGGGACGCTTCGCAATGA 60.436 61.111 9.50 0.00 36.39 2.57
3680 3745 2.750888 GGGGACGCTTCGCAATGAC 61.751 63.158 9.50 0.00 36.39 3.06
3681 3746 2.395690 GGACGCTTCGCAATGACG 59.604 61.111 0.00 0.00 0.00 4.35
3682 3747 2.276058 GACGCTTCGCAATGACGC 60.276 61.111 0.00 0.00 38.43 5.19
3683 3748 2.730672 GACGCTTCGCAATGACGCT 61.731 57.895 0.00 0.00 39.58 5.07
3684 3749 1.410737 GACGCTTCGCAATGACGCTA 61.411 55.000 0.00 0.00 39.58 4.26
3685 3750 1.270968 CGCTTCGCAATGACGCTAG 59.729 57.895 0.00 0.00 39.58 3.42
3686 3751 1.011794 GCTTCGCAATGACGCTAGC 60.012 57.895 4.06 4.06 38.73 3.42
3687 3752 1.638467 CTTCGCAATGACGCTAGCC 59.362 57.895 9.66 0.00 0.00 3.93
3688 3753 1.079474 TTCGCAATGACGCTAGCCA 60.079 52.632 9.66 2.16 0.00 4.75
3689 3754 0.672091 TTCGCAATGACGCTAGCCAA 60.672 50.000 9.66 0.00 0.00 4.52
3690 3755 0.672091 TCGCAATGACGCTAGCCAAA 60.672 50.000 9.66 0.00 0.00 3.28
3691 3756 0.167908 CGCAATGACGCTAGCCAAAA 59.832 50.000 9.66 0.00 0.00 2.44
3692 3757 1.791555 CGCAATGACGCTAGCCAAAAG 60.792 52.381 9.66 0.00 0.00 2.27
3693 3758 1.900237 CAATGACGCTAGCCAAAAGC 58.100 50.000 9.66 0.00 44.25 3.51
3702 3767 2.251371 GCCAAAAGCGGACACGAC 59.749 61.111 0.00 0.00 44.60 4.34
3703 3768 2.943653 CCAAAAGCGGACACGACC 59.056 61.111 0.00 0.00 44.60 4.79
3704 3769 1.597027 CCAAAAGCGGACACGACCT 60.597 57.895 0.00 0.00 44.60 3.85
3705 3770 1.566018 CCAAAAGCGGACACGACCTC 61.566 60.000 0.00 0.00 44.60 3.85
3706 3771 0.600255 CAAAAGCGGACACGACCTCT 60.600 55.000 0.00 0.00 44.60 3.69
3707 3772 0.319641 AAAAGCGGACACGACCTCTC 60.320 55.000 0.00 0.00 44.60 3.20
3708 3773 1.461091 AAAGCGGACACGACCTCTCA 61.461 55.000 0.00 0.00 44.60 3.27
3709 3774 2.126424 GCGGACACGACCTCTCAC 60.126 66.667 0.00 0.00 44.60 3.51
3710 3775 2.627737 GCGGACACGACCTCTCACT 61.628 63.158 0.00 0.00 44.60 3.41
3711 3776 1.210413 CGGACACGACCTCTCACTG 59.790 63.158 0.00 0.00 44.60 3.66
3712 3777 1.587054 GGACACGACCTCTCACTGG 59.413 63.158 0.00 0.00 0.00 4.00
3713 3778 1.080434 GACACGACCTCTCACTGGC 60.080 63.158 0.00 0.00 0.00 4.85
3714 3779 2.126307 CACGACCTCTCACTGGCG 60.126 66.667 0.00 0.00 0.00 5.69
3715 3780 4.057428 ACGACCTCTCACTGGCGC 62.057 66.667 0.00 0.00 0.00 6.53
3716 3781 4.803426 CGACCTCTCACTGGCGCC 62.803 72.222 22.73 22.73 0.00 6.53
3717 3782 4.803426 GACCTCTCACTGGCGCCG 62.803 72.222 23.90 18.98 0.00 6.46
3719 3784 4.803426 CCTCTCACTGGCGCCGAC 62.803 72.222 23.90 0.00 0.00 4.79
3720 3785 4.056125 CTCTCACTGGCGCCGACA 62.056 66.667 23.90 2.68 0.00 4.35
3721 3786 3.362399 CTCTCACTGGCGCCGACAT 62.362 63.158 23.90 3.46 0.00 3.06
3722 3787 2.434884 CTCACTGGCGCCGACATT 60.435 61.111 23.90 0.00 0.00 2.71
3723 3788 2.741985 TCACTGGCGCCGACATTG 60.742 61.111 23.90 13.71 0.00 2.82
3724 3789 2.741985 CACTGGCGCCGACATTGA 60.742 61.111 23.90 0.00 0.00 2.57
3725 3790 2.031919 ACTGGCGCCGACATTGAA 59.968 55.556 23.90 0.00 0.00 2.69
3726 3791 2.034879 ACTGGCGCCGACATTGAAG 61.035 57.895 23.90 13.44 0.00 3.02
3727 3792 3.386867 CTGGCGCCGACATTGAAGC 62.387 63.158 23.90 0.00 0.00 3.86
3728 3793 3.430862 GGCGCCGACATTGAAGCA 61.431 61.111 12.58 0.00 0.00 3.91
3729 3794 2.764314 GGCGCCGACATTGAAGCAT 61.764 57.895 12.58 0.00 0.00 3.79
3730 3795 1.297893 GCGCCGACATTGAAGCATC 60.298 57.895 0.00 0.00 0.00 3.91
3731 3796 1.011904 CGCCGACATTGAAGCATCG 60.012 57.895 0.00 0.00 0.00 3.84
3732 3797 1.695893 CGCCGACATTGAAGCATCGT 61.696 55.000 0.00 0.00 32.70 3.73
3733 3798 0.247814 GCCGACATTGAAGCATCGTG 60.248 55.000 0.00 0.00 32.70 4.35
3734 3799 1.078709 CCGACATTGAAGCATCGTGT 58.921 50.000 0.20 0.20 32.70 4.49
3735 3800 1.464608 CCGACATTGAAGCATCGTGTT 59.535 47.619 2.05 0.00 32.70 3.32
3736 3801 2.498905 CGACATTGAAGCATCGTGTTG 58.501 47.619 2.05 1.84 30.15 3.33
3737 3802 2.725759 CGACATTGAAGCATCGTGTTGG 60.726 50.000 6.62 0.00 30.15 3.77
3738 3803 2.226437 GACATTGAAGCATCGTGTTGGT 59.774 45.455 2.05 0.00 30.15 3.67
3739 3804 2.226437 ACATTGAAGCATCGTGTTGGTC 59.774 45.455 0.00 0.00 0.00 4.02
3740 3805 0.865111 TTGAAGCATCGTGTTGGTCG 59.135 50.000 0.00 0.00 0.00 4.79
3741 3806 0.032815 TGAAGCATCGTGTTGGTCGA 59.967 50.000 0.00 0.00 41.45 4.20
3742 3807 0.716108 GAAGCATCGTGTTGGTCGAG 59.284 55.000 0.00 0.00 40.57 4.04
3743 3808 0.317160 AAGCATCGTGTTGGTCGAGA 59.683 50.000 0.00 0.00 40.57 4.04
3744 3809 0.109086 AGCATCGTGTTGGTCGAGAG 60.109 55.000 0.00 0.00 40.57 3.20
3745 3810 0.109272 GCATCGTGTTGGTCGAGAGA 60.109 55.000 0.00 0.00 40.57 3.10
3746 3811 1.901538 CATCGTGTTGGTCGAGAGAG 58.098 55.000 0.00 0.00 43.49 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 164 5.412640 CAACAATGCTTGCATATTCTTCCA 58.587 37.500 8.61 0.00 0.00 3.53
178 181 0.541296 AGAGGCCAAGCTGCAACAAT 60.541 50.000 5.01 0.00 0.00 2.71
385 388 2.432510 GGAGATGTCGAGGACCTCAAAT 59.567 50.000 21.49 10.81 31.33 2.32
664 670 2.748605 CATCCGATACCAGAGCAAGAC 58.251 52.381 0.00 0.00 0.00 3.01
694 700 4.205587 AGTACATCCTCTTCGGTATCGTT 58.794 43.478 0.00 0.00 37.69 3.85
741 747 6.806668 TCCATATCTGACTATTGTTGACCA 57.193 37.500 0.00 0.00 0.00 4.02
939 945 2.795231 ACTGAGGCATGCATAAGTGT 57.205 45.000 21.42 7.31 0.00 3.55
1316 1327 4.448060 GTCGTTACCTATTATGAAGCCTGC 59.552 45.833 0.00 0.00 0.00 4.85
1473 1484 4.651503 GGAGAGAGAGAGAGAGAGAGAGAA 59.348 50.000 0.00 0.00 0.00 2.87
1502 1527 7.124750 AGAGAATTATTTTTGAGACCAATGGGG 59.875 37.037 3.55 0.00 44.81 4.96
1591 1616 1.133363 TTTGTCCCCAGAAGACGGAA 58.867 50.000 0.00 0.00 37.04 4.30
1712 1737 8.394971 TCAGCTTCTGAAAATACATTGAAAGA 57.605 30.769 0.00 0.00 37.57 2.52
1894 1919 8.351461 TGATTGATTTGCGATAAAATGAGCATA 58.649 29.630 0.00 0.00 39.50 3.14
2614 2639 5.503634 TTTCTTTGTCCATCTCCATCTCA 57.496 39.130 0.00 0.00 0.00 3.27
2773 2802 9.529325 GAACAGATGTAACTGCATGTAGTAATA 57.471 33.333 17.28 4.10 41.06 0.98
2830 2859 7.557719 ACATTAGCAGCAATACTACCTCAAAAT 59.442 33.333 0.00 0.00 0.00 1.82
3039 3104 4.200092 GCCTTGGATCGGAGATAGTTTTT 58.800 43.478 0.00 0.00 45.12 1.94
3351 3416 2.350772 GCACAATTGGTTCAACTCCTCG 60.351 50.000 10.83 0.00 0.00 4.63
3386 3451 0.815615 GCGTTGGAGATGCCCTTAGG 60.816 60.000 0.00 0.00 34.03 2.69
3387 3452 1.154205 CGCGTTGGAGATGCCCTTAG 61.154 60.000 0.00 0.00 36.93 2.18
3388 3453 1.153449 CGCGTTGGAGATGCCCTTA 60.153 57.895 0.00 0.00 36.93 2.69
3389 3454 2.436646 CGCGTTGGAGATGCCCTT 60.437 61.111 0.00 0.00 36.93 3.95
3390 3455 4.473520 CCGCGTTGGAGATGCCCT 62.474 66.667 4.92 0.00 42.00 5.19
3391 3456 4.467084 TCCGCGTTGGAGATGCCC 62.467 66.667 4.92 0.00 43.74 5.36
3399 3464 3.047877 GTTGAGGGTCCGCGTTGG 61.048 66.667 4.92 0.00 40.09 3.77
3400 3465 3.047877 GGTTGAGGGTCCGCGTTG 61.048 66.667 4.92 0.00 0.00 4.10
3401 3466 4.675029 CGGTTGAGGGTCCGCGTT 62.675 66.667 4.92 0.00 40.28 4.84
3409 3474 3.476031 ATATGCGGGCGGTTGAGGG 62.476 63.158 0.00 0.00 0.00 4.30
3410 3475 2.111043 ATATGCGGGCGGTTGAGG 59.889 61.111 0.00 0.00 0.00 3.86
3411 3476 1.498865 GACATATGCGGGCGGTTGAG 61.499 60.000 1.58 0.00 0.00 3.02
3412 3477 1.522806 GACATATGCGGGCGGTTGA 60.523 57.895 1.58 0.00 0.00 3.18
3413 3478 0.249699 TAGACATATGCGGGCGGTTG 60.250 55.000 1.58 0.00 0.00 3.77
3414 3479 0.033504 CTAGACATATGCGGGCGGTT 59.966 55.000 1.58 0.00 0.00 4.44
3415 3480 0.826256 TCTAGACATATGCGGGCGGT 60.826 55.000 1.58 0.00 0.00 5.68
3416 3481 0.388649 GTCTAGACATATGCGGGCGG 60.389 60.000 18.20 0.00 0.00 6.13
3417 3482 0.388649 GGTCTAGACATATGCGGGCG 60.389 60.000 23.91 0.00 0.00 6.13
3418 3483 0.388649 CGGTCTAGACATATGCGGGC 60.389 60.000 23.91 2.82 0.00 6.13
3419 3484 0.388649 GCGGTCTAGACATATGCGGG 60.389 60.000 23.91 4.13 0.00 6.13
3420 3485 0.729478 CGCGGTCTAGACATATGCGG 60.729 60.000 28.31 17.26 36.94 5.69
3421 3486 0.040336 ACGCGGTCTAGACATATGCG 60.040 55.000 31.35 31.35 41.96 4.73
3422 3487 2.225963 ACTACGCGGTCTAGACATATGC 59.774 50.000 23.91 18.70 0.00 3.14
3423 3488 3.747010 AGACTACGCGGTCTAGACATATG 59.253 47.826 23.91 12.58 43.76 1.78
3424 3489 4.005487 AGACTACGCGGTCTAGACATAT 57.995 45.455 23.91 8.97 43.76 1.78
3425 3490 3.465742 AGACTACGCGGTCTAGACATA 57.534 47.619 23.91 9.61 43.76 2.29
3426 3491 2.328819 AGACTACGCGGTCTAGACAT 57.671 50.000 23.91 8.98 43.76 3.06
3427 3492 2.967599 TAGACTACGCGGTCTAGACA 57.032 50.000 23.91 2.46 43.76 3.41
3431 3496 1.135139 ACGTCTAGACTACGCGGTCTA 59.865 52.381 20.34 19.65 43.76 2.59
3432 3497 0.108424 ACGTCTAGACTACGCGGTCT 60.108 55.000 20.34 19.53 46.68 3.85
3433 3498 0.026027 CACGTCTAGACTACGCGGTC 59.974 60.000 20.34 9.46 44.04 4.79
3434 3499 0.671781 ACACGTCTAGACTACGCGGT 60.672 55.000 20.34 7.13 44.04 5.68
3435 3500 0.445436 AACACGTCTAGACTACGCGG 59.555 55.000 20.34 6.49 44.04 6.46
3436 3501 1.136141 ACAACACGTCTAGACTACGCG 60.136 52.381 20.34 3.53 44.04 6.01
3437 3502 2.608467 ACAACACGTCTAGACTACGC 57.392 50.000 20.34 0.00 44.04 4.42
3438 3503 3.433274 TGGTACAACACGTCTAGACTACG 59.567 47.826 20.34 10.83 40.43 3.51
3450 3515 3.455313 ACCGCATTGGATGGTACAACAC 61.455 50.000 0.00 0.00 42.30 3.32
3451 3516 1.271652 ACCGCATTGGATGGTACAACA 60.272 47.619 0.00 0.00 42.30 3.33
3452 3517 1.400494 GACCGCATTGGATGGTACAAC 59.600 52.381 0.00 0.00 42.30 3.32
3453 3518 1.680555 GGACCGCATTGGATGGTACAA 60.681 52.381 0.00 0.00 42.30 2.41
3454 3519 0.107410 GGACCGCATTGGATGGTACA 60.107 55.000 0.00 0.00 43.09 2.90
3455 3520 0.180406 AGGACCGCATTGGATGGTAC 59.820 55.000 0.00 0.00 42.00 3.34
3456 3521 0.180171 CAGGACCGCATTGGATGGTA 59.820 55.000 0.00 0.00 42.00 3.25
3457 3522 1.077501 CAGGACCGCATTGGATGGT 60.078 57.895 0.00 0.00 42.00 3.55
3458 3523 1.077501 ACAGGACCGCATTGGATGG 60.078 57.895 0.00 0.00 42.00 3.51
3459 3524 0.677731 ACACAGGACCGCATTGGATG 60.678 55.000 0.00 0.00 42.00 3.51
3460 3525 0.392998 GACACAGGACCGCATTGGAT 60.393 55.000 0.00 0.00 42.00 3.41
3461 3526 1.003839 GACACAGGACCGCATTGGA 60.004 57.895 0.00 0.00 42.00 3.53
3462 3527 0.888736 TTGACACAGGACCGCATTGG 60.889 55.000 0.00 0.00 46.41 3.16
3463 3528 1.131126 GATTGACACAGGACCGCATTG 59.869 52.381 0.00 0.00 0.00 2.82
3464 3529 1.453155 GATTGACACAGGACCGCATT 58.547 50.000 0.00 0.00 0.00 3.56
3465 3530 0.392998 GGATTGACACAGGACCGCAT 60.393 55.000 0.00 0.00 0.00 4.73
3466 3531 1.003839 GGATTGACACAGGACCGCA 60.004 57.895 0.00 0.00 0.00 5.69
3467 3532 0.605319 TTGGATTGACACAGGACCGC 60.605 55.000 0.00 0.00 0.00 5.68
3468 3533 1.156736 GTTGGATTGACACAGGACCG 58.843 55.000 0.00 0.00 0.00 4.79
3469 3534 1.156736 CGTTGGATTGACACAGGACC 58.843 55.000 0.00 0.00 0.00 4.46
3470 3535 2.069273 CTCGTTGGATTGACACAGGAC 58.931 52.381 0.00 0.00 0.00 3.85
3471 3536 1.967779 TCTCGTTGGATTGACACAGGA 59.032 47.619 0.00 0.00 0.00 3.86
3472 3537 2.341257 CTCTCGTTGGATTGACACAGG 58.659 52.381 0.00 0.00 0.00 4.00
3473 3538 2.289072 ACCTCTCGTTGGATTGACACAG 60.289 50.000 0.00 0.00 0.00 3.66
3474 3539 1.691976 ACCTCTCGTTGGATTGACACA 59.308 47.619 0.00 0.00 0.00 3.72
3475 3540 2.338500 GACCTCTCGTTGGATTGACAC 58.662 52.381 0.00 0.00 0.00 3.67
3476 3541 1.275291 GGACCTCTCGTTGGATTGACA 59.725 52.381 0.00 0.00 0.00 3.58
3477 3542 1.736032 CGGACCTCTCGTTGGATTGAC 60.736 57.143 0.00 0.00 0.00 3.18
3478 3543 0.530744 CGGACCTCTCGTTGGATTGA 59.469 55.000 0.00 0.00 0.00 2.57
3479 3544 0.460284 CCGGACCTCTCGTTGGATTG 60.460 60.000 0.00 0.00 0.00 2.67
3480 3545 0.613853 TCCGGACCTCTCGTTGGATT 60.614 55.000 0.00 0.00 0.00 3.01
3481 3546 0.397254 ATCCGGACCTCTCGTTGGAT 60.397 55.000 6.12 0.00 35.99 3.41
3482 3547 1.000019 ATCCGGACCTCTCGTTGGA 60.000 57.895 6.12 0.00 34.78 3.53
3483 3548 1.141881 CATCCGGACCTCTCGTTGG 59.858 63.158 6.12 0.00 0.00 3.77
3484 3549 1.100510 TACATCCGGACCTCTCGTTG 58.899 55.000 6.12 0.00 0.00 4.10
3485 3550 1.101331 GTACATCCGGACCTCTCGTT 58.899 55.000 6.12 0.00 0.00 3.85
3486 3551 0.255318 AGTACATCCGGACCTCTCGT 59.745 55.000 6.12 0.00 0.00 4.18
3487 3552 1.390565 AAGTACATCCGGACCTCTCG 58.609 55.000 6.12 0.00 0.00 4.04
3488 3553 3.889520 AAAAGTACATCCGGACCTCTC 57.110 47.619 6.12 0.00 0.00 3.20
3489 3554 3.838903 AGAAAAAGTACATCCGGACCTCT 59.161 43.478 6.12 0.00 0.00 3.69
3490 3555 4.203654 AGAAAAAGTACATCCGGACCTC 57.796 45.455 6.12 0.00 0.00 3.85
3491 3556 4.382793 GCTAGAAAAAGTACATCCGGACCT 60.383 45.833 6.12 0.00 0.00 3.85
3492 3557 3.869832 GCTAGAAAAAGTACATCCGGACC 59.130 47.826 6.12 0.00 0.00 4.46
3493 3558 4.501071 TGCTAGAAAAAGTACATCCGGAC 58.499 43.478 6.12 0.00 0.00 4.79
3494 3559 4.811969 TGCTAGAAAAAGTACATCCGGA 57.188 40.909 6.61 6.61 0.00 5.14
3495 3560 5.411669 AGTTTGCTAGAAAAAGTACATCCGG 59.588 40.000 0.00 0.00 0.00 5.14
3496 3561 6.307155 CAGTTTGCTAGAAAAAGTACATCCG 58.693 40.000 0.00 0.00 0.00 4.18
3497 3562 6.430000 TCCAGTTTGCTAGAAAAAGTACATCC 59.570 38.462 0.00 0.00 0.00 3.51
3498 3563 7.387948 TCTCCAGTTTGCTAGAAAAAGTACATC 59.612 37.037 0.00 0.00 0.00 3.06
3499 3564 7.224297 TCTCCAGTTTGCTAGAAAAAGTACAT 58.776 34.615 0.00 0.00 0.00 2.29
3500 3565 6.588204 TCTCCAGTTTGCTAGAAAAAGTACA 58.412 36.000 0.00 0.00 0.00 2.90
3501 3566 7.492352 TTCTCCAGTTTGCTAGAAAAAGTAC 57.508 36.000 0.00 0.00 0.00 2.73
3502 3567 7.773690 ACTTTCTCCAGTTTGCTAGAAAAAGTA 59.226 33.333 0.00 0.00 37.47 2.24
3503 3568 6.603599 ACTTTCTCCAGTTTGCTAGAAAAAGT 59.396 34.615 0.00 0.00 37.47 2.66
3504 3569 6.914757 CACTTTCTCCAGTTTGCTAGAAAAAG 59.085 38.462 0.00 0.00 37.47 2.27
3505 3570 6.183360 CCACTTTCTCCAGTTTGCTAGAAAAA 60.183 38.462 0.00 0.00 37.47 1.94
3506 3571 5.299279 CCACTTTCTCCAGTTTGCTAGAAAA 59.701 40.000 0.00 0.00 37.47 2.29
3507 3572 4.821805 CCACTTTCTCCAGTTTGCTAGAAA 59.178 41.667 0.00 0.00 36.71 2.52
3508 3573 4.389374 CCACTTTCTCCAGTTTGCTAGAA 58.611 43.478 0.00 0.00 0.00 2.10
3509 3574 3.244561 CCCACTTTCTCCAGTTTGCTAGA 60.245 47.826 0.00 0.00 0.00 2.43
3510 3575 3.077359 CCCACTTTCTCCAGTTTGCTAG 58.923 50.000 0.00 0.00 0.00 3.42
3511 3576 2.224769 CCCCACTTTCTCCAGTTTGCTA 60.225 50.000 0.00 0.00 0.00 3.49
3512 3577 1.479389 CCCCACTTTCTCCAGTTTGCT 60.479 52.381 0.00 0.00 0.00 3.91
3513 3578 0.961753 CCCCACTTTCTCCAGTTTGC 59.038 55.000 0.00 0.00 0.00 3.68
3514 3579 2.362077 CAACCCCACTTTCTCCAGTTTG 59.638 50.000 0.00 0.00 0.00 2.93
3515 3580 2.666317 CAACCCCACTTTCTCCAGTTT 58.334 47.619 0.00 0.00 0.00 2.66
3516 3581 1.133482 CCAACCCCACTTTCTCCAGTT 60.133 52.381 0.00 0.00 0.00 3.16
3517 3582 0.478507 CCAACCCCACTTTCTCCAGT 59.521 55.000 0.00 0.00 0.00 4.00
3518 3583 0.251341 CCCAACCCCACTTTCTCCAG 60.251 60.000 0.00 0.00 0.00 3.86
3519 3584 1.850549 CCCAACCCCACTTTCTCCA 59.149 57.895 0.00 0.00 0.00 3.86
3520 3585 1.606601 GCCCAACCCCACTTTCTCC 60.607 63.158 0.00 0.00 0.00 3.71
3521 3586 0.178961 AAGCCCAACCCCACTTTCTC 60.179 55.000 0.00 0.00 0.00 2.87
3522 3587 0.264657 AAAGCCCAACCCCACTTTCT 59.735 50.000 0.00 0.00 0.00 2.52
3523 3588 0.392706 CAAAGCCCAACCCCACTTTC 59.607 55.000 0.00 0.00 30.16 2.62
3524 3589 1.695114 GCAAAGCCCAACCCCACTTT 61.695 55.000 0.00 0.00 32.73 2.66
3525 3590 2.140138 GCAAAGCCCAACCCCACTT 61.140 57.895 0.00 0.00 0.00 3.16
3526 3591 2.524148 GCAAAGCCCAACCCCACT 60.524 61.111 0.00 0.00 0.00 4.00
3527 3592 3.989787 CGCAAAGCCCAACCCCAC 61.990 66.667 0.00 0.00 0.00 4.61
3538 3603 4.697756 TCCTGGTCGCCCGCAAAG 62.698 66.667 0.00 0.00 0.00 2.77
3546 3611 4.980805 TGGCAACGTCCTGGTCGC 62.981 66.667 13.13 0.71 42.51 5.19
3547 3612 3.041940 GTGGCAACGTCCTGGTCG 61.042 66.667 11.71 11.71 42.51 4.79
3548 3613 3.041940 CGTGGCAACGTCCTGGTC 61.042 66.667 5.16 0.00 44.93 4.02
3578 3643 4.659172 TTTCAGTGGGCCAGGGCG 62.659 66.667 6.40 0.00 43.06 6.13
3579 3644 2.203625 TTTTCAGTGGGCCAGGGC 60.204 61.111 6.40 3.77 41.06 5.19
3580 3645 1.908299 GGTTTTCAGTGGGCCAGGG 60.908 63.158 6.40 1.25 0.00 4.45
3581 3646 1.908299 GGGTTTTCAGTGGGCCAGG 60.908 63.158 6.40 1.71 0.00 4.45
3582 3647 2.268076 CGGGTTTTCAGTGGGCCAG 61.268 63.158 6.40 0.00 0.00 4.85
3583 3648 2.203422 CGGGTTTTCAGTGGGCCA 60.203 61.111 0.00 0.00 0.00 5.36
3584 3649 2.203437 ACGGGTTTTCAGTGGGCC 60.203 61.111 0.00 0.00 0.00 5.80
3585 3650 0.822121 AAGACGGGTTTTCAGTGGGC 60.822 55.000 0.00 0.00 0.00 5.36
3586 3651 1.235724 GAAGACGGGTTTTCAGTGGG 58.764 55.000 0.00 0.00 0.00 4.61
3587 3652 1.202770 AGGAAGACGGGTTTTCAGTGG 60.203 52.381 4.74 0.00 0.00 4.00
3588 3653 2.143925 GAGGAAGACGGGTTTTCAGTG 58.856 52.381 4.74 0.00 0.00 3.66
3589 3654 2.037381 GAGAGGAAGACGGGTTTTCAGT 59.963 50.000 4.74 0.00 0.00 3.41
3590 3655 2.613223 GGAGAGGAAGACGGGTTTTCAG 60.613 54.545 4.74 0.00 0.00 3.02
3591 3656 1.346722 GGAGAGGAAGACGGGTTTTCA 59.653 52.381 4.74 0.00 0.00 2.69
3592 3657 1.338864 GGGAGAGGAAGACGGGTTTTC 60.339 57.143 0.00 0.00 0.00 2.29
3593 3658 0.691332 GGGAGAGGAAGACGGGTTTT 59.309 55.000 0.00 0.00 0.00 2.43
3594 3659 1.542187 CGGGAGAGGAAGACGGGTTT 61.542 60.000 0.00 0.00 0.00 3.27
3595 3660 1.982938 CGGGAGAGGAAGACGGGTT 60.983 63.158 0.00 0.00 0.00 4.11
3596 3661 2.362632 CGGGAGAGGAAGACGGGT 60.363 66.667 0.00 0.00 0.00 5.28
3597 3662 3.839432 GCGGGAGAGGAAGACGGG 61.839 72.222 0.00 0.00 0.00 5.28
3598 3663 4.194720 CGCGGGAGAGGAAGACGG 62.195 72.222 0.00 0.00 0.00 4.79
3599 3664 3.441290 ACGCGGGAGAGGAAGACG 61.441 66.667 12.47 0.00 0.00 4.18
3600 3665 2.182030 CACGCGGGAGAGGAAGAC 59.818 66.667 12.47 0.00 0.00 3.01
3601 3666 2.282958 ACACGCGGGAGAGGAAGA 60.283 61.111 19.19 0.00 0.00 2.87
3602 3667 2.125912 CACACGCGGGAGAGGAAG 60.126 66.667 19.19 0.00 0.00 3.46
3603 3668 2.035237 AAACACACGCGGGAGAGGAA 62.035 55.000 19.19 0.00 0.00 3.36
3604 3669 2.035237 AAAACACACGCGGGAGAGGA 62.035 55.000 19.19 0.00 0.00 3.71
3605 3670 1.566018 GAAAACACACGCGGGAGAGG 61.566 60.000 19.19 3.61 0.00 3.69
3606 3671 0.878523 TGAAAACACACGCGGGAGAG 60.879 55.000 19.19 7.07 0.00 3.20
3607 3672 1.144276 TGAAAACACACGCGGGAGA 59.856 52.632 19.19 0.00 0.00 3.71
3608 3673 1.278637 GTGAAAACACACGCGGGAG 59.721 57.895 19.19 10.92 0.00 4.30
3609 3674 1.449778 TGTGAAAACACACGCGGGA 60.450 52.632 19.19 0.00 42.86 5.14
3610 3675 1.298041 GTGTGAAAACACACGCGGG 60.298 57.895 6.92 6.92 44.66 6.13
3611 3676 4.278609 GTGTGAAAACACACGCGG 57.721 55.556 12.47 1.27 44.66 6.46
3616 3681 2.405594 GCGCCGTGTGAAAACACA 59.594 55.556 9.45 0.00 40.42 3.72
3617 3682 2.353030 GGCGCCGTGTGAAAACAC 60.353 61.111 12.58 0.00 37.27 3.32
3618 3683 2.824489 TGGCGCCGTGTGAAAACA 60.824 55.556 23.90 0.00 0.00 2.83
3619 3684 2.051345 CTGGCGCCGTGTGAAAAC 60.051 61.111 23.90 0.00 0.00 2.43
3620 3685 2.997952 TAGCTGGCGCCGTGTGAAAA 62.998 55.000 23.90 0.00 36.60 2.29
3621 3686 3.523087 TAGCTGGCGCCGTGTGAAA 62.523 57.895 23.90 0.00 36.60 2.69
3622 3687 3.932580 CTAGCTGGCGCCGTGTGAA 62.933 63.158 23.90 0.87 36.60 3.18
3623 3688 4.435436 CTAGCTGGCGCCGTGTGA 62.435 66.667 23.90 1.77 36.60 3.58
3624 3689 4.742201 ACTAGCTGGCGCCGTGTG 62.742 66.667 23.90 12.92 36.60 3.82
3625 3690 4.436998 GACTAGCTGGCGCCGTGT 62.437 66.667 23.90 15.22 36.60 4.49
3632 3697 1.795286 GCATGAATACGACTAGCTGGC 59.205 52.381 0.00 0.00 0.00 4.85
3633 3698 3.055591 CAGCATGAATACGACTAGCTGG 58.944 50.000 0.00 0.00 42.99 4.85
3635 3700 2.363680 AGCAGCATGAATACGACTAGCT 59.636 45.455 0.00 0.00 39.69 3.32
3636 3701 2.748605 AGCAGCATGAATACGACTAGC 58.251 47.619 0.00 0.00 39.69 3.42
3637 3702 7.078011 TCTATAGCAGCATGAATACGACTAG 57.922 40.000 0.00 0.00 39.69 2.57
3638 3703 6.094186 CCTCTATAGCAGCATGAATACGACTA 59.906 42.308 0.00 0.00 39.69 2.59
3639 3704 5.105957 CCTCTATAGCAGCATGAATACGACT 60.106 44.000 0.00 0.00 39.69 4.18
3640 3705 5.098893 CCTCTATAGCAGCATGAATACGAC 58.901 45.833 0.00 0.00 39.69 4.34
3641 3706 4.158579 CCCTCTATAGCAGCATGAATACGA 59.841 45.833 0.00 0.00 39.69 3.43
3642 3707 4.428209 CCCTCTATAGCAGCATGAATACG 58.572 47.826 0.00 0.00 39.69 3.06
3643 3708 4.467795 TCCCCTCTATAGCAGCATGAATAC 59.532 45.833 0.00 0.00 39.69 1.89
3644 3709 4.467795 GTCCCCTCTATAGCAGCATGAATA 59.532 45.833 0.00 0.00 39.69 1.75
3645 3710 3.262915 GTCCCCTCTATAGCAGCATGAAT 59.737 47.826 0.00 0.00 39.69 2.57
3646 3711 2.634940 GTCCCCTCTATAGCAGCATGAA 59.365 50.000 0.00 0.00 39.69 2.57
3647 3712 2.251818 GTCCCCTCTATAGCAGCATGA 58.748 52.381 0.00 0.00 39.69 3.07
3648 3713 1.067283 CGTCCCCTCTATAGCAGCATG 60.067 57.143 0.00 0.00 40.87 4.06
3649 3714 1.261480 CGTCCCCTCTATAGCAGCAT 58.739 55.000 0.00 0.00 0.00 3.79
3650 3715 1.464376 GCGTCCCCTCTATAGCAGCA 61.464 60.000 0.00 0.00 0.00 4.41
3651 3716 1.182385 AGCGTCCCCTCTATAGCAGC 61.182 60.000 0.00 0.00 0.00 5.25
3652 3717 1.271102 GAAGCGTCCCCTCTATAGCAG 59.729 57.143 0.00 0.00 0.00 4.24
3653 3718 1.329256 GAAGCGTCCCCTCTATAGCA 58.671 55.000 0.00 0.00 0.00 3.49
3654 3719 0.241481 CGAAGCGTCCCCTCTATAGC 59.759 60.000 0.00 0.00 0.00 2.97
3669 3734 1.083806 TGGCTAGCGTCATTGCGAAG 61.084 55.000 9.00 3.12 40.67 3.79
3670 3735 0.672091 TTGGCTAGCGTCATTGCGAA 60.672 50.000 9.00 0.00 40.67 4.70
3671 3736 0.672091 TTTGGCTAGCGTCATTGCGA 60.672 50.000 9.00 0.00 40.67 5.10
3672 3737 0.167908 TTTTGGCTAGCGTCATTGCG 59.832 50.000 9.00 0.00 40.67 4.85
3673 3738 1.900237 CTTTTGGCTAGCGTCATTGC 58.100 50.000 9.00 0.00 0.00 3.56
3674 3739 1.900237 GCTTTTGGCTAGCGTCATTG 58.100 50.000 9.00 0.00 38.06 2.82
3681 3746 1.502190 GTGTCCGCTTTTGGCTAGC 59.498 57.895 6.04 6.04 39.13 3.42
3682 3747 0.669318 TCGTGTCCGCTTTTGGCTAG 60.669 55.000 0.00 0.00 39.13 3.42
3683 3748 0.947180 GTCGTGTCCGCTTTTGGCTA 60.947 55.000 0.00 0.00 39.13 3.93
3684 3749 2.110213 TCGTGTCCGCTTTTGGCT 59.890 55.556 0.00 0.00 39.13 4.75
3685 3750 2.251371 GTCGTGTCCGCTTTTGGC 59.749 61.111 0.00 0.00 37.64 4.52
3686 3751 1.566018 GAGGTCGTGTCCGCTTTTGG 61.566 60.000 0.00 0.00 0.00 3.28
3687 3752 0.600255 AGAGGTCGTGTCCGCTTTTG 60.600 55.000 0.00 0.00 34.08 2.44
3688 3753 0.319641 GAGAGGTCGTGTCCGCTTTT 60.320 55.000 0.00 0.00 37.72 2.27
3689 3754 1.289380 GAGAGGTCGTGTCCGCTTT 59.711 57.895 0.00 0.00 37.72 3.51
3690 3755 1.901948 TGAGAGGTCGTGTCCGCTT 60.902 57.895 0.00 0.00 37.72 4.68
3691 3756 2.282251 TGAGAGGTCGTGTCCGCT 60.282 61.111 0.00 0.00 40.15 5.52
3692 3757 2.126424 GTGAGAGGTCGTGTCCGC 60.126 66.667 0.00 0.00 0.00 5.54
3693 3758 1.210413 CAGTGAGAGGTCGTGTCCG 59.790 63.158 0.00 0.00 0.00 4.79
3694 3759 1.587054 CCAGTGAGAGGTCGTGTCC 59.413 63.158 0.00 0.00 0.00 4.02
3695 3760 1.080434 GCCAGTGAGAGGTCGTGTC 60.080 63.158 0.00 0.00 0.00 3.67
3696 3761 2.920645 CGCCAGTGAGAGGTCGTGT 61.921 63.158 0.00 0.00 0.00 4.49
3697 3762 2.126307 CGCCAGTGAGAGGTCGTG 60.126 66.667 0.00 0.00 0.00 4.35
3698 3763 4.057428 GCGCCAGTGAGAGGTCGT 62.057 66.667 0.00 0.00 0.00 4.34
3699 3764 4.803426 GGCGCCAGTGAGAGGTCG 62.803 72.222 24.80 0.00 0.00 4.79
3700 3765 4.803426 CGGCGCCAGTGAGAGGTC 62.803 72.222 28.98 0.00 0.00 3.85
3702 3767 4.803426 GTCGGCGCCAGTGAGAGG 62.803 72.222 28.98 7.38 0.00 3.69
3703 3768 2.842394 AATGTCGGCGCCAGTGAGAG 62.842 60.000 28.98 8.23 0.00 3.20
3704 3769 2.942796 AATGTCGGCGCCAGTGAGA 61.943 57.895 28.98 14.89 0.00 3.27
3705 3770 2.434884 AATGTCGGCGCCAGTGAG 60.435 61.111 28.98 9.94 0.00 3.51
3706 3771 2.723586 TTCAATGTCGGCGCCAGTGA 62.724 55.000 28.98 17.28 35.36 3.41
3707 3772 2.244436 CTTCAATGTCGGCGCCAGTG 62.244 60.000 28.98 16.95 0.00 3.66
3708 3773 2.031919 TTCAATGTCGGCGCCAGT 59.968 55.556 28.98 2.55 0.00 4.00
3709 3774 2.787249 CTTCAATGTCGGCGCCAG 59.213 61.111 28.98 19.33 0.00 4.85
3710 3775 3.430862 GCTTCAATGTCGGCGCCA 61.431 61.111 28.98 11.20 0.00 5.69
3711 3776 2.652893 GATGCTTCAATGTCGGCGCC 62.653 60.000 19.07 19.07 0.00 6.53
3712 3777 1.297893 GATGCTTCAATGTCGGCGC 60.298 57.895 0.00 0.00 0.00 6.53
3713 3778 1.011904 CGATGCTTCAATGTCGGCG 60.012 57.895 0.00 0.00 0.00 6.46
3714 3779 0.247814 CACGATGCTTCAATGTCGGC 60.248 55.000 0.08 0.00 38.33 5.54
3715 3780 1.078709 ACACGATGCTTCAATGTCGG 58.921 50.000 0.08 0.00 38.33 4.79
3716 3781 2.498905 CAACACGATGCTTCAATGTCG 58.501 47.619 6.88 0.00 39.78 4.35
3717 3782 2.226437 ACCAACACGATGCTTCAATGTC 59.774 45.455 6.88 0.00 0.00 3.06
3718 3783 2.226437 GACCAACACGATGCTTCAATGT 59.774 45.455 0.08 1.03 0.00 2.71
3719 3784 2.725759 CGACCAACACGATGCTTCAATG 60.726 50.000 0.08 0.42 0.00 2.82
3720 3785 1.464608 CGACCAACACGATGCTTCAAT 59.535 47.619 0.08 0.00 0.00 2.57
3721 3786 0.865111 CGACCAACACGATGCTTCAA 59.135 50.000 0.08 0.00 0.00 2.69
3722 3787 0.032815 TCGACCAACACGATGCTTCA 59.967 50.000 0.08 0.00 34.85 3.02
3723 3788 0.716108 CTCGACCAACACGATGCTTC 59.284 55.000 0.00 0.00 39.02 3.86
3724 3789 0.317160 TCTCGACCAACACGATGCTT 59.683 50.000 0.00 0.00 39.02 3.91
3725 3790 0.109086 CTCTCGACCAACACGATGCT 60.109 55.000 0.00 0.00 39.02 3.79
3726 3791 0.109272 TCTCTCGACCAACACGATGC 60.109 55.000 0.00 0.00 39.02 3.91
3727 3792 1.901538 CTCTCTCGACCAACACGATG 58.098 55.000 0.00 0.00 39.02 3.84
3728 3793 0.171455 GCTCTCTCGACCAACACGAT 59.829 55.000 0.00 0.00 39.02 3.73
3729 3794 1.579932 GCTCTCTCGACCAACACGA 59.420 57.895 0.00 0.00 38.11 4.35
3730 3795 1.444553 GGCTCTCTCGACCAACACG 60.445 63.158 0.00 0.00 0.00 4.49
3731 3796 1.444553 CGGCTCTCTCGACCAACAC 60.445 63.158 0.00 0.00 0.00 3.32
3732 3797 2.962569 CGGCTCTCTCGACCAACA 59.037 61.111 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.