Multiple sequence alignment - TraesCS2A01G549300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G549300 chr2A 100.000 4059 0 0 1 4059 756832643 756828585 0.000000e+00 7496
1 TraesCS2A01G549300 chr2A 91.944 360 20 3 1 354 266870441 266870797 2.820000e-136 496
2 TraesCS2A01G549300 chr2D 92.555 3358 129 47 357 3690 625457044 625460304 0.000000e+00 4704
3 TraesCS2A01G549300 chr2D 79.552 357 30 17 3711 4053 625460289 625460616 8.840000e-52 215
4 TraesCS2A01G549300 chr2B 90.807 1784 75 44 801 2537 767640389 767642130 0.000000e+00 2303
5 TraesCS2A01G549300 chr2B 90.049 1025 49 16 2684 3691 767642238 767643226 0.000000e+00 1279
6 TraesCS2A01G549300 chr2B 88.579 359 35 5 357 711 767639991 767640347 8.060000e-117 431
7 TraesCS2A01G549300 chr3A 94.915 354 16 1 1 354 737131541 737131190 1.650000e-153 553
8 TraesCS2A01G549300 chr4D 88.669 353 37 3 1 353 308598768 308598419 1.040000e-115 427
9 TraesCS2A01G549300 chr7B 88.352 352 35 4 1 352 582710894 582711239 6.270000e-113 418
10 TraesCS2A01G549300 chr5D 87.571 354 38 4 1 353 482605638 482605986 4.890000e-109 405
11 TraesCS2A01G549300 chr5B 87.571 354 39 5 1 353 93724975 93724626 4.890000e-109 405
12 TraesCS2A01G549300 chr5B 86.471 340 37 8 1 339 708232869 708233200 8.290000e-97 364
13 TraesCS2A01G549300 chr1A 86.364 352 43 5 2 353 320495864 320496210 2.960000e-101 379
14 TraesCS2A01G549300 chr4B 85.393 356 41 9 1 353 488616459 488616806 3.860000e-95 359


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G549300 chr2A 756828585 756832643 4058 True 7496.000000 7496 100.000000 1 4059 1 chr2A.!!$R1 4058
1 TraesCS2A01G549300 chr2D 625457044 625460616 3572 False 2459.500000 4704 86.053500 357 4053 2 chr2D.!!$F1 3696
2 TraesCS2A01G549300 chr2B 767639991 767643226 3235 False 1337.666667 2303 89.811667 357 3691 3 chr2B.!!$F1 3334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 521 0.038159 AGACGAGAAAGCGGTCAAGG 60.038 55.0 0.00 0.0 35.12 3.61 F
1764 1837 0.394488 AGCAGCAGCAGAAGCATCAT 60.394 50.0 3.17 0.0 45.49 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2349 2434 0.108472 TACACTAGCAGCAGCAGCAG 60.108 55.0 12.92 9.67 45.49 4.24 R
3718 3840 0.037232 GTCAAGTCCACGGGAGAAGG 60.037 60.0 0.00 0.00 29.39 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.361977 GGTCGCCCGTTGCACATT 61.362 61.111 0.00 0.00 41.33 2.71
22 23 2.036006 GGTCGCCCGTTGCACATTA 61.036 57.895 0.00 0.00 41.33 1.90
23 24 1.579084 GGTCGCCCGTTGCACATTAA 61.579 55.000 0.00 0.00 41.33 1.40
24 25 0.238817 GTCGCCCGTTGCACATTAAA 59.761 50.000 0.00 0.00 41.33 1.52
25 26 0.952280 TCGCCCGTTGCACATTAAAA 59.048 45.000 0.00 0.00 41.33 1.52
26 27 1.337071 TCGCCCGTTGCACATTAAAAA 59.663 42.857 0.00 0.00 41.33 1.94
72 73 6.882610 AAAATCTAGTGCATTGACACAAGA 57.117 33.333 11.85 0.00 43.23 3.02
73 74 7.458409 AAAATCTAGTGCATTGACACAAGAT 57.542 32.000 11.85 0.00 43.23 2.40
74 75 6.674694 AATCTAGTGCATTGACACAAGATC 57.325 37.500 11.85 0.00 43.23 2.75
75 76 5.151297 TCTAGTGCATTGACACAAGATCA 57.849 39.130 11.85 0.00 43.23 2.92
76 77 5.550290 TCTAGTGCATTGACACAAGATCAA 58.450 37.500 11.85 0.00 43.23 2.57
77 78 6.175471 TCTAGTGCATTGACACAAGATCAAT 58.825 36.000 11.85 0.00 45.57 2.57
86 87 7.509141 TTGACACAAGATCAATGTATGTTGT 57.491 32.000 4.11 0.00 42.28 3.32
87 88 7.132694 TGACACAAGATCAATGTATGTTGTC 57.867 36.000 4.11 7.66 40.30 3.18
88 89 6.709846 TGACACAAGATCAATGTATGTTGTCA 59.290 34.615 13.28 13.28 40.30 3.58
89 90 6.902341 ACACAAGATCAATGTATGTTGTCAC 58.098 36.000 4.11 0.00 40.30 3.67
90 91 6.486320 ACACAAGATCAATGTATGTTGTCACA 59.514 34.615 4.11 0.00 40.30 3.58
91 92 7.019418 CACAAGATCAATGTATGTTGTCACAG 58.981 38.462 4.11 0.00 40.30 3.66
92 93 6.936335 ACAAGATCAATGTATGTTGTCACAGA 59.064 34.615 2.62 0.00 38.56 3.41
93 94 7.445096 ACAAGATCAATGTATGTTGTCACAGAA 59.555 33.333 2.62 0.00 38.56 3.02
94 95 8.456471 CAAGATCAATGTATGTTGTCACAGAAT 58.544 33.333 0.00 0.00 35.94 2.40
95 96 8.571461 AGATCAATGTATGTTGTCACAGAATT 57.429 30.769 0.00 0.00 35.94 2.17
96 97 9.017509 AGATCAATGTATGTTGTCACAGAATTT 57.982 29.630 0.00 0.00 35.94 1.82
97 98 9.630098 GATCAATGTATGTTGTCACAGAATTTT 57.370 29.630 0.00 0.00 35.94 1.82
125 126 7.376435 TCAATATTTGAAACATTGCTCGAGA 57.624 32.000 18.75 0.00 36.59 4.04
126 127 7.988737 TCAATATTTGAAACATTGCTCGAGAT 58.011 30.769 18.75 0.00 36.59 2.75
127 128 9.108284 TCAATATTTGAAACATTGCTCGAGATA 57.892 29.630 18.75 2.54 36.59 1.98
128 129 9.162793 CAATATTTGAAACATTGCTCGAGATAC 57.837 33.333 18.75 0.00 0.00 2.24
129 130 6.741992 ATTTGAAACATTGCTCGAGATACA 57.258 33.333 18.75 1.12 0.00 2.29
130 131 6.552859 TTTGAAACATTGCTCGAGATACAA 57.447 33.333 18.75 11.56 0.00 2.41
131 132 6.552859 TTGAAACATTGCTCGAGATACAAA 57.447 33.333 18.75 2.00 0.00 2.83
132 133 6.552859 TGAAACATTGCTCGAGATACAAAA 57.447 33.333 18.75 0.13 0.00 2.44
133 134 6.964908 TGAAACATTGCTCGAGATACAAAAA 58.035 32.000 18.75 0.00 0.00 1.94
134 135 7.592938 TGAAACATTGCTCGAGATACAAAAAT 58.407 30.769 18.75 0.84 0.00 1.82
135 136 8.726068 TGAAACATTGCTCGAGATACAAAAATA 58.274 29.630 18.75 0.00 0.00 1.40
136 137 9.554724 GAAACATTGCTCGAGATACAAAAATAA 57.445 29.630 18.75 0.00 0.00 1.40
137 138 8.895932 AACATTGCTCGAGATACAAAAATAAC 57.104 30.769 18.75 0.00 0.00 1.89
138 139 8.039603 ACATTGCTCGAGATACAAAAATAACA 57.960 30.769 18.75 0.00 0.00 2.41
139 140 8.511321 ACATTGCTCGAGATACAAAAATAACAA 58.489 29.630 18.75 6.18 0.00 2.83
140 141 9.340695 CATTGCTCGAGATACAAAAATAACAAA 57.659 29.630 18.75 0.00 0.00 2.83
141 142 9.906660 ATTGCTCGAGATACAAAAATAACAAAA 57.093 25.926 18.75 0.00 0.00 2.44
142 143 9.906660 TTGCTCGAGATACAAAAATAACAAAAT 57.093 25.926 18.75 0.00 0.00 1.82
143 144 9.906660 TGCTCGAGATACAAAAATAACAAAATT 57.093 25.926 18.75 0.00 0.00 1.82
160 161 7.724305 ACAAAATTGACACTGAATAGTACGT 57.276 32.000 0.00 0.00 34.74 3.57
161 162 8.821147 ACAAAATTGACACTGAATAGTACGTA 57.179 30.769 0.00 0.00 34.74 3.57
162 163 9.263538 ACAAAATTGACACTGAATAGTACGTAA 57.736 29.630 0.00 0.00 34.74 3.18
163 164 9.525007 CAAAATTGACACTGAATAGTACGTAAC 57.475 33.333 0.00 0.00 34.74 2.50
164 165 8.821147 AAATTGACACTGAATAGTACGTAACA 57.179 30.769 0.00 0.00 34.74 2.41
165 166 7.807687 ATTGACACTGAATAGTACGTAACAC 57.192 36.000 0.00 0.00 34.74 3.32
166 167 6.316440 TGACACTGAATAGTACGTAACACA 57.684 37.500 0.00 0.00 34.74 3.72
167 168 6.737118 TGACACTGAATAGTACGTAACACAA 58.263 36.000 0.00 0.00 34.74 3.33
168 169 6.859508 TGACACTGAATAGTACGTAACACAAG 59.140 38.462 0.00 0.00 34.74 3.16
169 170 6.742109 ACACTGAATAGTACGTAACACAAGT 58.258 36.000 0.00 0.00 34.74 3.16
170 171 7.205297 ACACTGAATAGTACGTAACACAAGTT 58.795 34.615 0.00 0.00 37.27 2.66
171 172 7.168637 ACACTGAATAGTACGTAACACAAGTTG 59.831 37.037 0.00 0.00 35.32 3.16
172 173 6.643770 ACTGAATAGTACGTAACACAAGTTGG 59.356 38.462 7.96 0.00 35.32 3.77
173 174 6.747125 TGAATAGTACGTAACACAAGTTGGA 58.253 36.000 7.96 0.00 38.69 3.53
174 175 6.642131 TGAATAGTACGTAACACAAGTTGGAC 59.358 38.462 7.96 0.00 38.69 4.02
175 176 4.660789 AGTACGTAACACAAGTTGGACT 57.339 40.909 7.96 0.00 38.69 3.85
176 177 5.014808 AGTACGTAACACAAGTTGGACTT 57.985 39.130 7.96 0.00 39.39 3.01
177 178 5.045872 AGTACGTAACACAAGTTGGACTTC 58.954 41.667 7.96 0.00 36.03 3.01
178 179 3.864243 ACGTAACACAAGTTGGACTTCA 58.136 40.909 7.96 0.00 36.03 3.02
179 180 3.869246 ACGTAACACAAGTTGGACTTCAG 59.131 43.478 7.96 0.00 36.03 3.02
180 181 3.869246 CGTAACACAAGTTGGACTTCAGT 59.131 43.478 7.96 0.00 36.03 3.41
181 182 4.331717 CGTAACACAAGTTGGACTTCAGTT 59.668 41.667 7.96 10.38 36.03 3.16
182 183 5.163794 CGTAACACAAGTTGGACTTCAGTTT 60.164 40.000 7.96 0.00 36.03 2.66
183 184 5.722021 AACACAAGTTGGACTTCAGTTTT 57.278 34.783 7.96 0.00 36.03 2.43
184 185 5.059404 ACACAAGTTGGACTTCAGTTTTG 57.941 39.130 7.96 0.00 36.03 2.44
185 186 4.082245 ACACAAGTTGGACTTCAGTTTTGG 60.082 41.667 7.96 0.00 36.03 3.28
186 187 3.119137 ACAAGTTGGACTTCAGTTTTGGC 60.119 43.478 7.96 0.00 36.03 4.52
187 188 2.031870 AGTTGGACTTCAGTTTTGGCC 58.968 47.619 0.00 0.00 0.00 5.36
188 189 1.068588 GTTGGACTTCAGTTTTGGCCC 59.931 52.381 0.00 0.00 0.00 5.80
189 190 0.260230 TGGACTTCAGTTTTGGCCCA 59.740 50.000 0.00 0.00 0.00 5.36
190 191 1.133199 TGGACTTCAGTTTTGGCCCAT 60.133 47.619 0.00 0.00 0.00 4.00
191 192 1.970640 GGACTTCAGTTTTGGCCCATT 59.029 47.619 0.00 0.00 0.00 3.16
192 193 3.161866 GGACTTCAGTTTTGGCCCATTA 58.838 45.455 0.00 0.00 0.00 1.90
193 194 3.193479 GGACTTCAGTTTTGGCCCATTAG 59.807 47.826 0.00 0.00 0.00 1.73
194 195 2.562738 ACTTCAGTTTTGGCCCATTAGC 59.437 45.455 0.00 0.00 0.00 3.09
195 196 2.300956 TCAGTTTTGGCCCATTAGCA 57.699 45.000 0.00 0.00 0.00 3.49
196 197 1.892474 TCAGTTTTGGCCCATTAGCAC 59.108 47.619 0.00 0.00 0.00 4.40
197 198 1.617850 CAGTTTTGGCCCATTAGCACA 59.382 47.619 0.00 0.00 0.00 4.57
198 199 2.234414 CAGTTTTGGCCCATTAGCACAT 59.766 45.455 0.00 0.00 0.00 3.21
199 200 2.905736 AGTTTTGGCCCATTAGCACATT 59.094 40.909 0.00 0.00 0.00 2.71
200 201 3.002102 GTTTTGGCCCATTAGCACATTG 58.998 45.455 0.00 0.00 0.00 2.82
201 202 2.228545 TTGGCCCATTAGCACATTGA 57.771 45.000 0.00 0.00 0.00 2.57
202 203 1.766494 TGGCCCATTAGCACATTGAG 58.234 50.000 0.00 0.00 0.00 3.02
203 204 1.035139 GGCCCATTAGCACATTGAGG 58.965 55.000 0.00 0.00 0.00 3.86
204 205 1.686115 GGCCCATTAGCACATTGAGGT 60.686 52.381 0.00 0.00 0.00 3.85
205 206 1.678101 GCCCATTAGCACATTGAGGTC 59.322 52.381 0.00 0.00 0.00 3.85
206 207 2.945440 GCCCATTAGCACATTGAGGTCA 60.945 50.000 0.00 0.00 0.00 4.02
207 208 3.355378 CCCATTAGCACATTGAGGTCAA 58.645 45.455 0.00 0.00 40.51 3.18
208 209 3.956199 CCCATTAGCACATTGAGGTCAAT 59.044 43.478 0.00 0.00 46.62 2.57
209 210 4.403432 CCCATTAGCACATTGAGGTCAATT 59.597 41.667 2.31 0.00 43.48 2.32
210 211 5.105228 CCCATTAGCACATTGAGGTCAATTT 60.105 40.000 2.31 0.00 43.48 1.82
211 212 6.400568 CCATTAGCACATTGAGGTCAATTTT 58.599 36.000 2.31 0.00 43.48 1.82
212 213 7.363705 CCCATTAGCACATTGAGGTCAATTTTA 60.364 37.037 2.31 0.00 43.48 1.52
213 214 8.199449 CCATTAGCACATTGAGGTCAATTTTAT 58.801 33.333 2.31 0.00 43.48 1.40
214 215 9.241317 CATTAGCACATTGAGGTCAATTTTATC 57.759 33.333 2.31 0.00 43.48 1.75
215 216 6.839124 AGCACATTGAGGTCAATTTTATCA 57.161 33.333 2.31 0.00 43.48 2.15
216 217 7.414222 AGCACATTGAGGTCAATTTTATCAT 57.586 32.000 2.31 0.00 43.48 2.45
217 218 7.844009 AGCACATTGAGGTCAATTTTATCATT 58.156 30.769 2.31 0.00 43.48 2.57
218 219 8.316214 AGCACATTGAGGTCAATTTTATCATTT 58.684 29.630 2.31 0.00 43.48 2.32
219 220 8.938906 GCACATTGAGGTCAATTTTATCATTTT 58.061 29.630 2.31 0.00 43.48 1.82
238 239 9.715121 ATCATTTTTGTATCTTGAGCATTGTTT 57.285 25.926 0.00 0.00 0.00 2.83
239 240 9.545105 TCATTTTTGTATCTTGAGCATTGTTTT 57.455 25.926 0.00 0.00 0.00 2.43
240 241 9.588774 CATTTTTGTATCTTGAGCATTGTTTTG 57.411 29.630 0.00 0.00 0.00 2.44
241 242 8.939201 TTTTTGTATCTTGAGCATTGTTTTGA 57.061 26.923 0.00 0.00 0.00 2.69
242 243 8.939201 TTTTGTATCTTGAGCATTGTTTTGAA 57.061 26.923 0.00 0.00 0.00 2.69
243 244 9.545105 TTTTGTATCTTGAGCATTGTTTTGAAT 57.455 25.926 0.00 0.00 0.00 2.57
244 245 9.545105 TTTGTATCTTGAGCATTGTTTTGAATT 57.455 25.926 0.00 0.00 0.00 2.17
245 246 9.545105 TTGTATCTTGAGCATTGTTTTGAATTT 57.455 25.926 0.00 0.00 0.00 1.82
246 247 9.545105 TGTATCTTGAGCATTGTTTTGAATTTT 57.455 25.926 0.00 0.00 0.00 1.82
253 254 9.322773 TGAGCATTGTTTTGAATTTTTATGACA 57.677 25.926 0.00 0.00 0.00 3.58
255 256 9.934190 AGCATTGTTTTGAATTTTTATGACAAC 57.066 25.926 0.00 0.00 0.00 3.32
256 257 9.713740 GCATTGTTTTGAATTTTTATGACAACA 57.286 25.926 0.00 0.00 0.00 3.33
279 280 8.334263 ACATACATTGATGTTGTGTCAATACA 57.666 30.769 1.46 0.00 42.68 2.29
280 281 8.236586 ACATACATTGATGTTGTGTCAATACAC 58.763 33.333 1.46 1.73 46.89 2.90
281 282 6.882610 ACATTGATGTTGTGTCAATACACT 57.117 33.333 9.79 0.00 44.55 3.55
282 283 7.977789 ACATTGATGTTGTGTCAATACACTA 57.022 32.000 9.79 0.00 44.55 2.74
283 284 8.389779 ACATTGATGTTGTGTCAATACACTAA 57.610 30.769 9.79 1.10 44.55 2.24
284 285 8.845227 ACATTGATGTTGTGTCAATACACTAAA 58.155 29.630 9.79 0.00 44.55 1.85
325 326 9.869844 TTTTAAATATTTTTGAATGTGCAACGG 57.130 25.926 5.91 0.00 42.39 4.44
326 327 6.479095 AAATATTTTTGAATGTGCAACGGG 57.521 33.333 0.00 0.00 42.39 5.28
327 328 3.742433 ATTTTTGAATGTGCAACGGGA 57.258 38.095 0.00 0.00 42.39 5.14
328 329 3.742433 TTTTTGAATGTGCAACGGGAT 57.258 38.095 0.00 0.00 42.39 3.85
329 330 3.296322 TTTTGAATGTGCAACGGGATC 57.704 42.857 0.00 0.00 42.39 3.36
330 331 1.173043 TTGAATGTGCAACGGGATCC 58.827 50.000 1.92 1.92 42.39 3.36
350 351 2.753701 TGCACCGGTAGCACCAAT 59.246 55.556 22.47 0.00 38.47 3.16
351 352 1.074072 TGCACCGGTAGCACCAATT 59.926 52.632 22.47 0.00 38.47 2.32
352 353 1.240641 TGCACCGGTAGCACCAATTG 61.241 55.000 22.47 0.00 38.47 2.32
353 354 1.241315 GCACCGGTAGCACCAATTGT 61.241 55.000 19.85 0.00 38.47 2.71
354 355 1.243902 CACCGGTAGCACCAATTGTT 58.756 50.000 6.87 0.00 38.47 2.83
355 356 1.611491 CACCGGTAGCACCAATTGTTT 59.389 47.619 6.87 0.00 38.47 2.83
386 387 1.671054 CTGCCACATCGTTTCCGGT 60.671 57.895 0.00 0.00 33.95 5.28
390 391 0.604243 CCACATCGTTTCCGGTTCCA 60.604 55.000 0.00 0.00 33.95 3.53
400 401 2.047560 CGGTTCCAGGTCGTTCCC 60.048 66.667 0.00 0.00 36.75 3.97
403 404 0.605589 GGTTCCAGGTCGTTCCCAAG 60.606 60.000 0.00 0.00 36.75 3.61
407 408 0.396811 CCAGGTCGTTCCCAAGTTCT 59.603 55.000 0.00 0.00 36.75 3.01
431 432 5.592282 TGTTGAGAGGCTTTGTACAAAATCA 59.408 36.000 20.89 15.75 0.00 2.57
458 459 7.040062 ACCGATCCAAATTACAATTTCAGTCAA 60.040 33.333 0.00 0.00 36.52 3.18
520 521 0.038159 AGACGAGAAAGCGGTCAAGG 60.038 55.000 0.00 0.00 35.12 3.61
534 535 4.729856 AAGGACGTACACGGGCGC 62.730 66.667 0.00 0.00 44.95 6.53
642 644 2.604382 ATGCCAAACCCTGCCACC 60.604 61.111 0.00 0.00 0.00 4.61
643 645 3.465218 ATGCCAAACCCTGCCACCA 62.465 57.895 0.00 0.00 0.00 4.17
645 647 2.123511 CCAAACCCTGCCACCACA 60.124 61.111 0.00 0.00 0.00 4.17
646 648 2.498056 CCAAACCCTGCCACCACAC 61.498 63.158 0.00 0.00 0.00 3.82
647 649 1.756172 CAAACCCTGCCACCACACA 60.756 57.895 0.00 0.00 0.00 3.72
649 651 3.731766 AACCCTGCCACCACACACC 62.732 63.158 0.00 0.00 0.00 4.16
666 668 4.838307 CCCCCTCTCCAATCTCCA 57.162 61.111 0.00 0.00 0.00 3.86
667 669 2.225792 CCCCCTCTCCAATCTCCAC 58.774 63.158 0.00 0.00 0.00 4.02
668 670 1.348775 CCCCCTCTCCAATCTCCACC 61.349 65.000 0.00 0.00 0.00 4.61
669 671 1.348775 CCCCTCTCCAATCTCCACCC 61.349 65.000 0.00 0.00 0.00 4.61
670 672 0.621571 CCCTCTCCAATCTCCACCCA 60.622 60.000 0.00 0.00 0.00 4.51
671 673 1.289160 CCTCTCCAATCTCCACCCAA 58.711 55.000 0.00 0.00 0.00 4.12
672 674 1.065126 CCTCTCCAATCTCCACCCAAC 60.065 57.143 0.00 0.00 0.00 3.77
673 675 1.630369 CTCTCCAATCTCCACCCAACA 59.370 52.381 0.00 0.00 0.00 3.33
674 676 1.351017 TCTCCAATCTCCACCCAACAC 59.649 52.381 0.00 0.00 0.00 3.32
717 748 3.613702 CGTTCGCGTACGGCATCC 61.614 66.667 27.54 0.00 43.84 3.51
718 749 3.259751 GTTCGCGTACGGCATCCC 61.260 66.667 18.39 0.00 43.84 3.85
753 784 3.479269 GCGCGAAACCACGGAGAG 61.479 66.667 12.10 0.00 0.00 3.20
754 785 2.809601 CGCGAAACCACGGAGAGG 60.810 66.667 0.00 0.00 46.17 3.69
756 787 2.434359 CGAAACCACGGAGAGGCC 60.434 66.667 0.00 0.00 43.95 5.19
831 867 4.779733 AGGCGTGGGGGAGACGAT 62.780 66.667 0.00 0.00 39.21 3.73
832 868 4.222847 GGCGTGGGGGAGACGATC 62.223 72.222 0.00 0.00 39.21 3.69
914 950 3.847709 GCAGTTCGCAGCTCGCTC 61.848 66.667 6.58 1.09 41.79 5.03
915 951 3.540014 CAGTTCGCAGCTCGCTCG 61.540 66.667 6.58 0.00 39.08 5.03
1761 1834 2.701780 GCAGCAGCAGCAGAAGCAT 61.702 57.895 4.63 0.00 45.49 3.79
1764 1837 0.394488 AGCAGCAGCAGAAGCATCAT 60.394 50.000 3.17 0.00 45.49 2.45
2033 2112 5.619607 GCGTAATTATTTACCTCATGCGTTG 59.380 40.000 2.71 0.00 35.30 4.10
2234 2319 8.406297 CAGGGGTTTAGCTTCAAGAAATATTAC 58.594 37.037 0.00 0.00 0.00 1.89
2235 2320 8.336987 AGGGGTTTAGCTTCAAGAAATATTACT 58.663 33.333 0.00 0.00 0.00 2.24
2236 2321 9.623000 GGGGTTTAGCTTCAAGAAATATTACTA 57.377 33.333 0.00 0.00 0.00 1.82
2255 2340 8.961294 ATTACTAGTACTTTGACACGTAACAG 57.039 34.615 0.00 0.00 0.00 3.16
2258 2343 7.579726 ACTAGTACTTTGACACGTAACAGTAG 58.420 38.462 0.00 0.00 0.00 2.57
2347 2432 7.418378 AGCTATAGTTAGATTAGGCCTGAGAT 58.582 38.462 17.99 6.67 0.00 2.75
2348 2433 7.341769 AGCTATAGTTAGATTAGGCCTGAGATG 59.658 40.741 17.99 0.00 0.00 2.90
2349 2434 4.615588 AGTTAGATTAGGCCTGAGATGC 57.384 45.455 17.99 0.00 0.00 3.91
2350 2435 4.230455 AGTTAGATTAGGCCTGAGATGCT 58.770 43.478 17.99 6.38 0.00 3.79
2351 2436 4.040217 AGTTAGATTAGGCCTGAGATGCTG 59.960 45.833 17.99 0.00 0.00 4.41
2352 2437 1.072015 AGATTAGGCCTGAGATGCTGC 59.928 52.381 17.99 0.00 0.00 5.25
2502 2591 0.727398 CGCCTTCCGTTTCCAATCTC 59.273 55.000 0.00 0.00 0.00 2.75
2532 2629 2.952310 GTCTCCACTTTTGTTCTTGGCT 59.048 45.455 0.00 0.00 0.00 4.75
2533 2630 2.951642 TCTCCACTTTTGTTCTTGGCTG 59.048 45.455 0.00 0.00 0.00 4.85
2534 2631 1.408702 TCCACTTTTGTTCTTGGCTGC 59.591 47.619 0.00 0.00 0.00 5.25
2535 2632 1.410153 CCACTTTTGTTCTTGGCTGCT 59.590 47.619 0.00 0.00 0.00 4.24
2539 2636 3.448660 ACTTTTGTTCTTGGCTGCTTCTT 59.551 39.130 0.00 0.00 0.00 2.52
2548 2645 4.160252 TCTTGGCTGCTTCTTTTGTTCTTT 59.840 37.500 0.00 0.00 0.00 2.52
2555 2652 4.391523 TGCTTCTTTTGTTCTTTGTTTGCC 59.608 37.500 0.00 0.00 0.00 4.52
2557 2654 5.810074 GCTTCTTTTGTTCTTTGTTTGCCTA 59.190 36.000 0.00 0.00 0.00 3.93
2562 2659 5.652994 TTGTTCTTTGTTTGCCTAGTGTT 57.347 34.783 0.00 0.00 0.00 3.32
2568 2665 5.180492 TCTTTGTTTGCCTAGTGTTAATCCG 59.820 40.000 0.00 0.00 0.00 4.18
2569 2666 3.340034 TGTTTGCCTAGTGTTAATCCGG 58.660 45.455 0.00 0.00 0.00 5.14
2580 2677 4.274950 AGTGTTAATCCGGTTTGAAGTGTG 59.725 41.667 8.06 0.00 0.00 3.82
2584 2681 1.098712 TCCGGTTTGAAGTGTGGTGC 61.099 55.000 0.00 0.00 0.00 5.01
2587 2684 1.944024 CGGTTTGAAGTGTGGTGCTAA 59.056 47.619 0.00 0.00 0.00 3.09
2589 2686 3.609175 CGGTTTGAAGTGTGGTGCTAATG 60.609 47.826 0.00 0.00 0.00 1.90
2590 2687 3.317993 GGTTTGAAGTGTGGTGCTAATGT 59.682 43.478 0.00 0.00 0.00 2.71
2592 2689 3.769739 TGAAGTGTGGTGCTAATGTCT 57.230 42.857 0.00 0.00 0.00 3.41
2593 2690 4.882842 TGAAGTGTGGTGCTAATGTCTA 57.117 40.909 0.00 0.00 0.00 2.59
2600 2697 5.929992 GTGTGGTGCTAATGTCTACTTACAA 59.070 40.000 0.00 0.00 32.02 2.41
2601 2698 6.090898 GTGTGGTGCTAATGTCTACTTACAAG 59.909 42.308 0.00 0.00 32.02 3.16
2625 2722 7.331026 AGTTACAATGATGCTAAGCTAACAGA 58.669 34.615 0.00 0.00 0.00 3.41
2646 2744 6.718454 ACAGAGTGATCATGATCTTTTTGGTT 59.282 34.615 30.65 11.33 38.60 3.67
3054 3152 4.069232 CAGCGGCGACTCCTCCAA 62.069 66.667 12.98 0.00 0.00 3.53
3055 3153 3.311110 AGCGGCGACTCCTCCAAA 61.311 61.111 12.98 0.00 0.00 3.28
3058 3156 1.218047 CGGCGACTCCTCCAAATGA 59.782 57.895 0.00 0.00 0.00 2.57
3059 3157 0.179073 CGGCGACTCCTCCAAATGAT 60.179 55.000 0.00 0.00 0.00 2.45
3060 3158 1.587547 GGCGACTCCTCCAAATGATC 58.412 55.000 0.00 0.00 0.00 2.92
3061 3159 1.587547 GCGACTCCTCCAAATGATCC 58.412 55.000 0.00 0.00 0.00 3.36
3062 3160 1.811941 GCGACTCCTCCAAATGATCCC 60.812 57.143 0.00 0.00 0.00 3.85
3063 3161 1.202698 CGACTCCTCCAAATGATCCCC 60.203 57.143 0.00 0.00 0.00 4.81
3064 3162 1.143889 GACTCCTCCAAATGATCCCCC 59.856 57.143 0.00 0.00 0.00 5.40
3065 3163 0.109342 CTCCTCCAAATGATCCCCCG 59.891 60.000 0.00 0.00 0.00 5.73
3066 3164 1.529244 CCTCCAAATGATCCCCCGC 60.529 63.158 0.00 0.00 0.00 6.13
3067 3165 1.529244 CTCCAAATGATCCCCCGCC 60.529 63.158 0.00 0.00 0.00 6.13
3068 3166 2.521708 CCAAATGATCCCCCGCCC 60.522 66.667 0.00 0.00 0.00 6.13
3069 3167 2.603008 CAAATGATCCCCCGCCCT 59.397 61.111 0.00 0.00 0.00 5.19
3070 3168 1.529244 CAAATGATCCCCCGCCCTC 60.529 63.158 0.00 0.00 0.00 4.30
3071 3169 2.768022 AAATGATCCCCCGCCCTCC 61.768 63.158 0.00 0.00 0.00 4.30
3072 3170 4.514594 ATGATCCCCCGCCCTCCA 62.515 66.667 0.00 0.00 0.00 3.86
3073 3171 3.818105 ATGATCCCCCGCCCTCCAT 62.818 63.158 0.00 0.00 0.00 3.41
3074 3172 3.958860 GATCCCCCGCCCTCCATG 61.959 72.222 0.00 0.00 0.00 3.66
3120 3218 2.144833 TTTGCACCATGAAGCCTGCG 62.145 55.000 0.00 0.00 31.96 5.18
3154 3253 3.957671 AACGCATGCAAGATATGACAG 57.042 42.857 19.57 0.00 0.00 3.51
3158 3257 2.349249 GCATGCAAGATATGACAGCGTC 60.349 50.000 14.21 2.32 0.00 5.19
3182 3281 2.194201 TCAAGATTTGGAACGGGGTC 57.806 50.000 0.00 0.00 0.00 4.46
3225 3324 2.105993 GACCGGGATGTAATTAAGGGCT 59.894 50.000 6.32 0.00 0.00 5.19
3240 3339 0.753111 GGGCTATTGTTGGGAGGCTG 60.753 60.000 0.00 0.00 36.11 4.85
3241 3340 0.753111 GGCTATTGTTGGGAGGCTGG 60.753 60.000 0.00 0.00 33.21 4.85
3242 3341 0.753111 GCTATTGTTGGGAGGCTGGG 60.753 60.000 0.00 0.00 0.00 4.45
3243 3342 0.753111 CTATTGTTGGGAGGCTGGGC 60.753 60.000 0.00 0.00 0.00 5.36
3254 3353 2.045926 GCTGGGCCGTGATTGAGT 60.046 61.111 0.00 0.00 0.00 3.41
3255 3354 2.109126 GCTGGGCCGTGATTGAGTC 61.109 63.158 0.00 0.00 0.00 3.36
3308 3407 9.443323 TTTGGTCCGTAATGGTATATTATGATG 57.557 33.333 0.00 0.00 39.52 3.07
3321 3420 1.419381 TATGATGGAGCCAAGCCGTA 58.581 50.000 0.00 0.00 0.00 4.02
3322 3421 0.107456 ATGATGGAGCCAAGCCGTAG 59.893 55.000 0.00 0.00 0.00 3.51
3323 3422 1.889573 GATGGAGCCAAGCCGTAGC 60.890 63.158 0.00 0.00 40.32 3.58
3324 3423 2.593468 GATGGAGCCAAGCCGTAGCA 62.593 60.000 0.00 0.00 43.56 3.49
3325 3424 2.046314 GGAGCCAAGCCGTAGCAA 60.046 61.111 0.00 0.00 43.56 3.91
3326 3425 1.674322 GGAGCCAAGCCGTAGCAAA 60.674 57.895 0.00 0.00 43.56 3.68
3443 3545 2.110967 GGTCGCTGCATGCTGTCAT 61.111 57.895 23.42 0.00 40.11 3.06
3473 3575 0.815615 GCAGTAGGGCCTACATGCAC 60.816 60.000 36.48 23.72 39.22 4.57
3484 3588 3.826524 CCTACATGCACCTCTCTCTCTA 58.173 50.000 0.00 0.00 0.00 2.43
3488 3592 3.890756 ACATGCACCTCTCTCTCTATCTG 59.109 47.826 0.00 0.00 0.00 2.90
3490 3594 3.286353 TGCACCTCTCTCTCTATCTGTG 58.714 50.000 0.00 0.00 0.00 3.66
3583 3693 1.815421 GCCTGCATGTCACCTACGG 60.815 63.158 0.00 0.00 0.00 4.02
3594 3704 2.094675 TCACCTACGGTACCTACTTGC 58.905 52.381 10.90 0.00 32.11 4.01
3673 3791 0.458669 CTCAATGCAATCACCTGCCC 59.541 55.000 0.00 0.00 41.90 5.36
3690 3812 2.105128 CAGCTACGCCCTTCTCCG 59.895 66.667 0.00 0.00 0.00 4.63
3691 3813 2.044252 AGCTACGCCCTTCTCCGA 60.044 61.111 0.00 0.00 0.00 4.55
3692 3814 1.455959 AGCTACGCCCTTCTCCGAT 60.456 57.895 0.00 0.00 0.00 4.18
3693 3815 1.007154 GCTACGCCCTTCTCCGATC 60.007 63.158 0.00 0.00 0.00 3.69
3694 3816 1.735376 GCTACGCCCTTCTCCGATCA 61.735 60.000 0.00 0.00 0.00 2.92
3695 3817 0.962489 CTACGCCCTTCTCCGATCAT 59.038 55.000 0.00 0.00 0.00 2.45
3696 3818 0.673985 TACGCCCTTCTCCGATCATG 59.326 55.000 0.00 0.00 0.00 3.07
3697 3819 1.958205 CGCCCTTCTCCGATCATGC 60.958 63.158 0.00 0.00 0.00 4.06
3698 3820 1.146930 GCCCTTCTCCGATCATGCA 59.853 57.895 0.00 0.00 0.00 3.96
3699 3821 1.162800 GCCCTTCTCCGATCATGCAC 61.163 60.000 0.00 0.00 0.00 4.57
3700 3822 0.178767 CCCTTCTCCGATCATGCACA 59.821 55.000 0.00 0.00 0.00 4.57
3701 3823 1.407299 CCCTTCTCCGATCATGCACAA 60.407 52.381 0.00 0.00 0.00 3.33
3702 3824 2.358957 CCTTCTCCGATCATGCACAAA 58.641 47.619 0.00 0.00 0.00 2.83
3703 3825 2.749076 CCTTCTCCGATCATGCACAAAA 59.251 45.455 0.00 0.00 0.00 2.44
3704 3826 3.191162 CCTTCTCCGATCATGCACAAAAA 59.809 43.478 0.00 0.00 0.00 1.94
3739 3861 0.679505 TTCTCCCGTGGACTTGACTG 59.320 55.000 0.00 0.00 0.00 3.51
3773 3895 4.908736 GTGCCGTAAGTACACGTATCTTA 58.091 43.478 5.19 0.00 40.31 2.10
3774 3896 4.730521 GTGCCGTAAGTACACGTATCTTAC 59.269 45.833 18.37 18.37 40.31 2.34
3833 3955 1.978542 AGTACTCGCGACAATGTGTC 58.021 50.000 3.71 0.09 43.65 3.67
3834 3956 0.989890 GTACTCGCGACAATGTGTCC 59.010 55.000 3.71 0.00 44.20 4.02
3849 3978 3.702048 TCCACTCGCCTTTCCCCG 61.702 66.667 0.00 0.00 0.00 5.73
3861 3990 0.111639 TTTCCCCGTAAAGGCAGCTT 59.888 50.000 0.00 0.00 39.21 3.74
3862 3991 0.608035 TTCCCCGTAAAGGCAGCTTG 60.608 55.000 0.00 0.00 39.21 4.01
3863 3992 1.303317 CCCCGTAAAGGCAGCTTGT 60.303 57.895 0.00 0.00 39.21 3.16
3865 3994 1.084289 CCCGTAAAGGCAGCTTGTAC 58.916 55.000 0.00 0.00 39.21 2.90
3866 3995 1.338769 CCCGTAAAGGCAGCTTGTACT 60.339 52.381 3.50 0.00 39.21 2.73
3867 3996 2.093869 CCCGTAAAGGCAGCTTGTACTA 60.094 50.000 3.50 0.00 39.21 1.82
3869 3998 3.998341 CCGTAAAGGCAGCTTGTACTAAA 59.002 43.478 3.50 0.00 0.00 1.85
3870 3999 4.453136 CCGTAAAGGCAGCTTGTACTAAAA 59.547 41.667 3.50 0.00 0.00 1.52
3871 4000 5.123344 CCGTAAAGGCAGCTTGTACTAAAAT 59.877 40.000 3.50 0.00 0.00 1.82
3872 4001 6.349033 CCGTAAAGGCAGCTTGTACTAAAATT 60.349 38.462 3.50 0.00 0.00 1.82
3873 4002 7.148373 CCGTAAAGGCAGCTTGTACTAAAATTA 60.148 37.037 3.50 0.00 0.00 1.40
3874 4003 7.903431 CGTAAAGGCAGCTTGTACTAAAATTAG 59.097 37.037 3.50 0.00 36.82 1.73
3875 4004 7.761038 AAAGGCAGCTTGTACTAAAATTAGT 57.239 32.000 10.43 10.43 45.39 2.24
3876 4005 8.857694 AAAGGCAGCTTGTACTAAAATTAGTA 57.142 30.769 8.59 8.59 43.36 1.82
3908 4037 5.809001 TCTTGTGAATTAAGTGATCCTGCT 58.191 37.500 0.00 0.00 0.00 4.24
3921 4050 7.789202 AGTGATCCTGCTACATATATCTTGT 57.211 36.000 0.00 0.00 0.00 3.16
3942 4071 7.437862 TCTTGTGAATTAAGTGATTTTTGGCAC 59.562 33.333 0.00 0.00 35.30 5.01
3943 4072 6.577103 TGTGAATTAAGTGATTTTTGGCACA 58.423 32.000 0.00 0.00 37.48 4.57
3944 4073 6.478344 TGTGAATTAAGTGATTTTTGGCACAC 59.522 34.615 0.00 0.00 39.29 3.82
3966 4096 8.454106 CACACCTATACATTTCAAAAGAGGAAG 58.546 37.037 0.00 0.00 0.00 3.46
3967 4097 8.383175 ACACCTATACATTTCAAAAGAGGAAGA 58.617 33.333 0.00 0.00 0.00 2.87
3981 4111 3.323979 AGAGGAAGACAACCACAACGTAT 59.676 43.478 0.00 0.00 0.00 3.06
3986 4116 7.562135 AGGAAGACAACCACAACGTATAATAT 58.438 34.615 0.00 0.00 0.00 1.28
3988 4118 6.598753 AGACAACCACAACGTATAATATGC 57.401 37.500 0.00 0.00 0.00 3.14
3998 4128 7.944649 CACAACGTATAATATGCTTACACATCG 59.055 37.037 0.00 0.00 0.00 3.84
4024 4154 7.654116 GGCCACTCTATCTAACTGATAAAACTC 59.346 40.741 0.00 0.00 37.22 3.01
4025 4155 8.198109 GCCACTCTATCTAACTGATAAAACTCA 58.802 37.037 0.00 0.00 37.22 3.41
4034 4164 9.832445 TCTAACTGATAAAACTCAATGATACCC 57.168 33.333 0.00 0.00 0.00 3.69
4035 4165 9.838339 CTAACTGATAAAACTCAATGATACCCT 57.162 33.333 0.00 0.00 0.00 4.34
4044 4174 0.670162 AATGATACCCTGCGCATTGC 59.330 50.000 12.24 0.00 46.70 3.56
4045 4175 0.179009 ATGATACCCTGCGCATTGCT 60.179 50.000 12.24 0.00 46.63 3.91
4046 4176 0.467804 TGATACCCTGCGCATTGCTA 59.532 50.000 12.24 0.00 46.63 3.49
4047 4177 0.868406 GATACCCTGCGCATTGCTAC 59.132 55.000 12.24 0.00 46.63 3.58
4048 4178 0.180171 ATACCCTGCGCATTGCTACA 59.820 50.000 12.24 4.18 46.63 2.74
4049 4179 0.461870 TACCCTGCGCATTGCTACAG 60.462 55.000 12.24 17.13 46.63 2.74
4050 4180 1.450134 CCCTGCGCATTGCTACAGA 60.450 57.895 22.77 0.00 46.63 3.41
4053 4183 1.402968 CCTGCGCATTGCTACAGAAAT 59.597 47.619 22.77 0.00 46.63 2.17
4054 4184 2.159338 CCTGCGCATTGCTACAGAAATT 60.159 45.455 22.77 0.00 46.63 1.82
4055 4185 2.850060 CTGCGCATTGCTACAGAAATTG 59.150 45.455 12.24 0.00 46.63 2.32
4056 4186 2.228582 TGCGCATTGCTACAGAAATTGT 59.771 40.909 5.66 0.00 46.63 2.71
4057 4187 3.438434 TGCGCATTGCTACAGAAATTGTA 59.562 39.130 5.66 0.00 46.63 2.41
4058 4188 4.083057 TGCGCATTGCTACAGAAATTGTAA 60.083 37.500 5.66 0.00 46.63 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 7.275888 TCTTGTGTCAATGCACTAGATTTTT 57.724 32.000 13.87 0.00 42.84 1.94
49 50 6.882610 TCTTGTGTCAATGCACTAGATTTT 57.117 33.333 13.87 0.00 42.84 1.82
54 55 5.868043 TTGATCTTGTGTCAATGCACTAG 57.132 39.130 10.80 10.80 41.33 2.57
61 62 8.114331 ACAACATACATTGATCTTGTGTCAAT 57.886 30.769 10.87 0.00 44.74 2.57
62 63 7.228308 TGACAACATACATTGATCTTGTGTCAA 59.772 33.333 10.87 0.00 39.65 3.18
63 64 6.709846 TGACAACATACATTGATCTTGTGTCA 59.290 34.615 10.87 11.39 33.57 3.58
64 65 7.017645 GTGACAACATACATTGATCTTGTGTC 58.982 38.462 10.87 9.58 33.57 3.67
65 66 6.486320 TGTGACAACATACATTGATCTTGTGT 59.514 34.615 10.87 7.51 33.57 3.72
66 67 6.901265 TGTGACAACATACATTGATCTTGTG 58.099 36.000 10.87 2.49 33.57 3.33
67 68 6.936335 TCTGTGACAACATACATTGATCTTGT 59.064 34.615 7.00 7.00 35.22 3.16
68 69 7.368480 TCTGTGACAACATACATTGATCTTG 57.632 36.000 0.00 0.00 35.22 3.02
69 70 7.984422 TTCTGTGACAACATACATTGATCTT 57.016 32.000 0.00 0.00 35.22 2.40
70 71 8.571461 AATTCTGTGACAACATACATTGATCT 57.429 30.769 0.00 0.00 35.22 2.75
71 72 9.630098 AAAATTCTGTGACAACATACATTGATC 57.370 29.630 0.00 0.00 35.22 2.92
101 102 7.376435 TCTCGAGCAATGTTTCAAATATTGA 57.624 32.000 20.45 2.10 40.99 2.57
102 103 9.162793 GTATCTCGAGCAATGTTTCAAATATTG 57.837 33.333 13.75 13.75 41.31 1.90
103 104 8.892723 TGTATCTCGAGCAATGTTTCAAATATT 58.107 29.630 7.81 0.00 0.00 1.28
104 105 8.437360 TGTATCTCGAGCAATGTTTCAAATAT 57.563 30.769 7.81 0.00 0.00 1.28
105 106 7.841915 TGTATCTCGAGCAATGTTTCAAATA 57.158 32.000 7.81 0.00 0.00 1.40
106 107 6.741992 TGTATCTCGAGCAATGTTTCAAAT 57.258 33.333 7.81 0.00 0.00 2.32
107 108 6.552859 TTGTATCTCGAGCAATGTTTCAAA 57.447 33.333 7.81 0.00 0.00 2.69
108 109 6.552859 TTTGTATCTCGAGCAATGTTTCAA 57.447 33.333 7.81 2.14 0.00 2.69
109 110 6.552859 TTTTGTATCTCGAGCAATGTTTCA 57.447 33.333 7.81 0.00 0.00 2.69
110 111 9.554724 TTATTTTTGTATCTCGAGCAATGTTTC 57.445 29.630 7.81 0.00 0.00 2.78
111 112 9.341899 GTTATTTTTGTATCTCGAGCAATGTTT 57.658 29.630 7.81 0.00 0.00 2.83
112 113 8.511321 TGTTATTTTTGTATCTCGAGCAATGTT 58.489 29.630 7.81 0.00 0.00 2.71
113 114 8.039603 TGTTATTTTTGTATCTCGAGCAATGT 57.960 30.769 7.81 0.00 0.00 2.71
114 115 8.894409 TTGTTATTTTTGTATCTCGAGCAATG 57.106 30.769 7.81 0.00 0.00 2.82
115 116 9.906660 TTTTGTTATTTTTGTATCTCGAGCAAT 57.093 25.926 7.81 0.00 0.00 3.56
116 117 9.906660 ATTTTGTTATTTTTGTATCTCGAGCAA 57.093 25.926 7.81 3.53 0.00 3.91
117 118 9.906660 AATTTTGTTATTTTTGTATCTCGAGCA 57.093 25.926 7.81 0.00 0.00 4.26
134 135 9.263538 ACGTACTATTCAGTGTCAATTTTGTTA 57.736 29.630 0.00 0.00 36.14 2.41
135 136 8.149973 ACGTACTATTCAGTGTCAATTTTGTT 57.850 30.769 0.00 0.00 36.14 2.83
136 137 7.724305 ACGTACTATTCAGTGTCAATTTTGT 57.276 32.000 0.00 0.00 36.14 2.83
137 138 9.525007 GTTACGTACTATTCAGTGTCAATTTTG 57.475 33.333 0.00 0.00 36.14 2.44
138 139 9.263538 TGTTACGTACTATTCAGTGTCAATTTT 57.736 29.630 0.00 0.00 36.14 1.82
139 140 8.706035 GTGTTACGTACTATTCAGTGTCAATTT 58.294 33.333 0.00 0.00 36.14 1.82
140 141 7.868922 TGTGTTACGTACTATTCAGTGTCAATT 59.131 33.333 0.00 0.00 36.14 2.32
141 142 7.372714 TGTGTTACGTACTATTCAGTGTCAAT 58.627 34.615 0.00 0.00 36.14 2.57
142 143 6.737118 TGTGTTACGTACTATTCAGTGTCAA 58.263 36.000 0.00 0.00 36.14 3.18
143 144 6.316440 TGTGTTACGTACTATTCAGTGTCA 57.684 37.500 0.00 0.00 36.14 3.58
144 145 6.860023 ACTTGTGTTACGTACTATTCAGTGTC 59.140 38.462 0.00 0.00 36.14 3.67
145 146 6.742109 ACTTGTGTTACGTACTATTCAGTGT 58.258 36.000 0.00 0.00 36.14 3.55
146 147 7.358931 CCAACTTGTGTTACGTACTATTCAGTG 60.359 40.741 0.00 0.00 34.00 3.66
147 148 6.643770 CCAACTTGTGTTACGTACTATTCAGT 59.356 38.462 0.00 0.00 35.38 3.41
148 149 6.864685 TCCAACTTGTGTTACGTACTATTCAG 59.135 38.462 0.00 0.00 34.60 3.02
149 150 6.642131 GTCCAACTTGTGTTACGTACTATTCA 59.358 38.462 0.00 0.00 34.60 2.57
150 151 6.865205 AGTCCAACTTGTGTTACGTACTATTC 59.135 38.462 0.00 0.00 34.60 1.75
151 152 6.752168 AGTCCAACTTGTGTTACGTACTATT 58.248 36.000 0.00 0.00 34.60 1.73
152 153 6.336842 AGTCCAACTTGTGTTACGTACTAT 57.663 37.500 0.00 0.00 34.60 2.12
153 154 5.772825 AGTCCAACTTGTGTTACGTACTA 57.227 39.130 0.00 0.00 34.60 1.82
154 155 4.660789 AGTCCAACTTGTGTTACGTACT 57.339 40.909 0.00 0.00 34.60 2.73
155 156 4.805192 TGAAGTCCAACTTGTGTTACGTAC 59.195 41.667 0.00 0.00 38.80 3.67
156 157 5.008619 TGAAGTCCAACTTGTGTTACGTA 57.991 39.130 0.00 0.00 38.80 3.57
157 158 3.864243 TGAAGTCCAACTTGTGTTACGT 58.136 40.909 0.00 0.00 38.80 3.57
158 159 3.869246 ACTGAAGTCCAACTTGTGTTACG 59.131 43.478 0.00 0.00 38.80 3.18
159 160 5.813080 AACTGAAGTCCAACTTGTGTTAC 57.187 39.130 0.00 0.00 38.80 2.50
160 161 6.349777 CCAAAACTGAAGTCCAACTTGTGTTA 60.350 38.462 0.00 0.00 38.80 2.41
161 162 5.469479 CAAAACTGAAGTCCAACTTGTGTT 58.531 37.500 0.00 0.21 38.80 3.32
162 163 4.082245 CCAAAACTGAAGTCCAACTTGTGT 60.082 41.667 0.00 0.00 38.80 3.72
163 164 4.423732 CCAAAACTGAAGTCCAACTTGTG 58.576 43.478 0.00 0.00 38.80 3.33
164 165 3.119137 GCCAAAACTGAAGTCCAACTTGT 60.119 43.478 0.00 0.00 38.80 3.16
165 166 3.447742 GCCAAAACTGAAGTCCAACTTG 58.552 45.455 0.00 0.00 38.80 3.16
166 167 2.430694 GGCCAAAACTGAAGTCCAACTT 59.569 45.455 0.00 0.00 41.95 2.66
167 168 2.031870 GGCCAAAACTGAAGTCCAACT 58.968 47.619 0.00 0.00 0.00 3.16
168 169 1.068588 GGGCCAAAACTGAAGTCCAAC 59.931 52.381 4.39 0.00 0.00 3.77
169 170 1.342474 TGGGCCAAAACTGAAGTCCAA 60.342 47.619 2.13 0.00 0.00 3.53
170 171 0.260230 TGGGCCAAAACTGAAGTCCA 59.740 50.000 2.13 0.00 0.00 4.02
171 172 1.632589 ATGGGCCAAAACTGAAGTCC 58.367 50.000 11.89 0.00 0.00 3.85
172 173 3.367395 GCTAATGGGCCAAAACTGAAGTC 60.367 47.826 11.89 0.00 0.00 3.01
173 174 2.562738 GCTAATGGGCCAAAACTGAAGT 59.437 45.455 11.89 0.00 0.00 3.01
174 175 2.562298 TGCTAATGGGCCAAAACTGAAG 59.438 45.455 11.89 1.50 0.00 3.02
175 176 2.298729 GTGCTAATGGGCCAAAACTGAA 59.701 45.455 11.89 0.00 0.00 3.02
176 177 1.892474 GTGCTAATGGGCCAAAACTGA 59.108 47.619 11.89 0.00 0.00 3.41
177 178 1.617850 TGTGCTAATGGGCCAAAACTG 59.382 47.619 11.89 0.24 0.00 3.16
178 179 2.008242 TGTGCTAATGGGCCAAAACT 57.992 45.000 11.89 0.00 0.00 2.66
179 180 3.002102 CAATGTGCTAATGGGCCAAAAC 58.998 45.455 11.89 5.38 0.00 2.43
180 181 2.902486 TCAATGTGCTAATGGGCCAAAA 59.098 40.909 11.89 0.00 0.00 2.44
181 182 2.496871 CTCAATGTGCTAATGGGCCAAA 59.503 45.455 11.89 0.00 0.00 3.28
182 183 2.101783 CTCAATGTGCTAATGGGCCAA 58.898 47.619 11.89 0.00 0.00 4.52
183 184 1.685803 CCTCAATGTGCTAATGGGCCA 60.686 52.381 9.61 9.61 0.00 5.36
184 185 1.035139 CCTCAATGTGCTAATGGGCC 58.965 55.000 0.00 0.00 0.00 5.80
185 186 1.678101 GACCTCAATGTGCTAATGGGC 59.322 52.381 0.00 0.00 0.00 5.36
186 187 3.003394 TGACCTCAATGTGCTAATGGG 57.997 47.619 0.00 0.00 0.00 4.00
187 188 5.587388 AATTGACCTCAATGTGCTAATGG 57.413 39.130 1.23 0.00 45.06 3.16
188 189 9.241317 GATAAAATTGACCTCAATGTGCTAATG 57.759 33.333 1.23 0.00 45.06 1.90
189 190 8.970020 TGATAAAATTGACCTCAATGTGCTAAT 58.030 29.630 1.23 0.00 45.06 1.73
190 191 8.347004 TGATAAAATTGACCTCAATGTGCTAA 57.653 30.769 1.23 0.00 45.06 3.09
191 192 7.936496 TGATAAAATTGACCTCAATGTGCTA 57.064 32.000 1.23 0.00 45.06 3.49
192 193 6.839124 TGATAAAATTGACCTCAATGTGCT 57.161 33.333 1.23 0.00 45.06 4.40
193 194 8.483307 AAATGATAAAATTGACCTCAATGTGC 57.517 30.769 1.23 0.00 45.06 4.57
212 213 9.715121 AAACAATGCTCAAGATACAAAAATGAT 57.285 25.926 0.00 0.00 0.00 2.45
213 214 9.545105 AAAACAATGCTCAAGATACAAAAATGA 57.455 25.926 0.00 0.00 0.00 2.57
214 215 9.588774 CAAAACAATGCTCAAGATACAAAAATG 57.411 29.630 0.00 0.00 0.00 2.32
215 216 9.545105 TCAAAACAATGCTCAAGATACAAAAAT 57.455 25.926 0.00 0.00 0.00 1.82
216 217 8.939201 TCAAAACAATGCTCAAGATACAAAAA 57.061 26.923 0.00 0.00 0.00 1.94
217 218 8.939201 TTCAAAACAATGCTCAAGATACAAAA 57.061 26.923 0.00 0.00 0.00 2.44
218 219 9.545105 AATTCAAAACAATGCTCAAGATACAAA 57.455 25.926 0.00 0.00 0.00 2.83
219 220 9.545105 AAATTCAAAACAATGCTCAAGATACAA 57.455 25.926 0.00 0.00 0.00 2.41
220 221 9.545105 AAAATTCAAAACAATGCTCAAGATACA 57.455 25.926 0.00 0.00 0.00 2.29
227 228 9.322773 TGTCATAAAAATTCAAAACAATGCTCA 57.677 25.926 0.00 0.00 0.00 4.26
229 230 9.934190 GTTGTCATAAAAATTCAAAACAATGCT 57.066 25.926 0.00 0.00 0.00 3.79
230 231 9.713740 TGTTGTCATAAAAATTCAAAACAATGC 57.286 25.926 0.00 0.00 0.00 3.56
254 255 8.334263 TGTATTGACACAACATCAATGTATGT 57.666 30.769 9.86 10.94 44.57 2.29
299 300 9.869844 CCGTTGCACATTCAAAAATATTTAAAA 57.130 25.926 0.01 0.00 0.00 1.52
300 301 8.499162 CCCGTTGCACATTCAAAAATATTTAAA 58.501 29.630 0.01 0.00 0.00 1.52
301 302 7.872993 TCCCGTTGCACATTCAAAAATATTTAA 59.127 29.630 0.01 0.00 0.00 1.52
302 303 7.378966 TCCCGTTGCACATTCAAAAATATTTA 58.621 30.769 0.01 0.00 0.00 1.40
303 304 6.226787 TCCCGTTGCACATTCAAAAATATTT 58.773 32.000 0.00 0.00 0.00 1.40
304 305 5.788450 TCCCGTTGCACATTCAAAAATATT 58.212 33.333 0.00 0.00 0.00 1.28
305 306 5.398603 TCCCGTTGCACATTCAAAAATAT 57.601 34.783 0.00 0.00 0.00 1.28
306 307 4.855715 TCCCGTTGCACATTCAAAAATA 57.144 36.364 0.00 0.00 0.00 1.40
307 308 3.742433 TCCCGTTGCACATTCAAAAAT 57.258 38.095 0.00 0.00 0.00 1.82
308 309 3.553922 GGATCCCGTTGCACATTCAAAAA 60.554 43.478 0.00 0.00 0.00 1.94
309 310 2.029470 GGATCCCGTTGCACATTCAAAA 60.029 45.455 0.00 0.00 0.00 2.44
310 311 1.543802 GGATCCCGTTGCACATTCAAA 59.456 47.619 0.00 0.00 0.00 2.69
311 312 1.173043 GGATCCCGTTGCACATTCAA 58.827 50.000 0.00 0.00 0.00 2.69
312 313 1.024046 CGGATCCCGTTGCACATTCA 61.024 55.000 6.06 0.00 42.73 2.57
313 314 1.714899 CCGGATCCCGTTGCACATTC 61.715 60.000 6.06 0.00 46.80 2.67
314 315 1.748879 CCGGATCCCGTTGCACATT 60.749 57.895 6.06 0.00 46.80 2.71
315 316 2.124736 CCGGATCCCGTTGCACAT 60.125 61.111 6.06 0.00 46.80 3.21
316 317 3.632080 ACCGGATCCCGTTGCACA 61.632 61.111 9.46 0.00 46.80 4.57
317 318 3.124921 CACCGGATCCCGTTGCAC 61.125 66.667 9.46 0.00 46.80 4.57
320 321 3.124921 GTGCACCGGATCCCGTTG 61.125 66.667 9.46 1.68 46.80 4.10
321 322 4.404098 GGTGCACCGGATCCCGTT 62.404 66.667 22.49 0.00 46.80 4.44
333 334 1.074072 AATTGGTGCTACCGGTGCA 59.926 52.632 19.93 21.51 42.58 4.57
334 335 1.241315 ACAATTGGTGCTACCGGTGC 61.241 55.000 19.93 19.04 42.58 5.01
335 336 1.243902 AACAATTGGTGCTACCGGTG 58.756 50.000 19.93 8.61 42.58 4.94
336 337 1.883926 GAAACAATTGGTGCTACCGGT 59.116 47.619 13.98 13.98 42.58 5.28
337 338 1.201414 GGAAACAATTGGTGCTACCGG 59.799 52.381 10.83 0.00 42.58 5.28
338 339 1.135803 CGGAAACAATTGGTGCTACCG 60.136 52.381 10.83 12.78 42.58 4.02
339 340 1.201414 CCGGAAACAATTGGTGCTACC 59.799 52.381 10.83 4.97 39.22 3.18
340 341 1.883926 ACCGGAAACAATTGGTGCTAC 59.116 47.619 9.46 0.00 32.33 3.58
341 342 1.883275 CACCGGAAACAATTGGTGCTA 59.117 47.619 9.46 0.00 44.69 3.49
342 343 0.673437 CACCGGAAACAATTGGTGCT 59.327 50.000 9.46 0.00 44.69 4.40
343 344 3.193471 CACCGGAAACAATTGGTGC 57.807 52.632 9.46 0.41 44.69 5.01
345 346 0.948678 CGTCACCGGAAACAATTGGT 59.051 50.000 9.46 0.00 34.29 3.67
346 347 3.765349 CGTCACCGGAAACAATTGG 57.235 52.632 9.46 0.00 0.00 3.16
365 366 1.210155 GGAAACGATGTGGCAGTGC 59.790 57.895 6.55 6.55 0.00 4.40
386 387 0.841289 AACTTGGGAACGACCTGGAA 59.159 50.000 0.00 0.00 38.98 3.53
390 391 1.129058 ACAGAACTTGGGAACGACCT 58.871 50.000 0.00 0.00 38.98 3.85
400 401 3.629398 ACAAAGCCTCTCAACAGAACTTG 59.371 43.478 0.00 0.00 29.47 3.16
403 404 4.127171 TGTACAAAGCCTCTCAACAGAAC 58.873 43.478 0.00 0.00 0.00 3.01
407 408 5.592282 TGATTTTGTACAAAGCCTCTCAACA 59.408 36.000 19.72 6.91 0.00 3.33
431 432 7.040062 TGACTGAAATTGTAATTTGGATCGGTT 60.040 33.333 7.27 0.00 38.64 4.44
480 481 3.211045 TCTTGTTTTTCCGTCTCCCTTG 58.789 45.455 0.00 0.00 0.00 3.61
481 482 3.135895 TCTCTTGTTTTTCCGTCTCCCTT 59.864 43.478 0.00 0.00 0.00 3.95
534 535 2.370281 ACTATTCGCACACTGACTGG 57.630 50.000 0.00 0.00 0.00 4.00
539 540 2.526077 TCGCTTACTATTCGCACACTG 58.474 47.619 0.00 0.00 0.00 3.66
574 575 0.249784 CTCATGTGAGGCGATCAGGG 60.250 60.000 2.03 0.00 39.07 4.45
649 651 1.348775 GGTGGAGATTGGAGAGGGGG 61.349 65.000 0.00 0.00 0.00 5.40
653 655 1.630369 TGTTGGGTGGAGATTGGAGAG 59.370 52.381 0.00 0.00 0.00 3.20
654 656 1.351017 GTGTTGGGTGGAGATTGGAGA 59.649 52.381 0.00 0.00 0.00 3.71
658 660 0.112218 TGGGTGTTGGGTGGAGATTG 59.888 55.000 0.00 0.00 0.00 2.67
659 661 0.856982 TTGGGTGTTGGGTGGAGATT 59.143 50.000 0.00 0.00 0.00 2.40
660 662 0.112412 GTTGGGTGTTGGGTGGAGAT 59.888 55.000 0.00 0.00 0.00 2.75
661 663 1.534697 GTTGGGTGTTGGGTGGAGA 59.465 57.895 0.00 0.00 0.00 3.71
662 664 1.530655 GGTTGGGTGTTGGGTGGAG 60.531 63.158 0.00 0.00 0.00 3.86
663 665 2.604152 GGTTGGGTGTTGGGTGGA 59.396 61.111 0.00 0.00 0.00 4.02
664 666 2.909965 CGGTTGGGTGTTGGGTGG 60.910 66.667 0.00 0.00 0.00 4.61
665 667 3.601685 GCGGTTGGGTGTTGGGTG 61.602 66.667 0.00 0.00 0.00 4.61
666 668 4.130554 TGCGGTTGGGTGTTGGGT 62.131 61.111 0.00 0.00 0.00 4.51
667 669 3.601685 GTGCGGTTGGGTGTTGGG 61.602 66.667 0.00 0.00 0.00 4.12
668 670 3.959975 CGTGCGGTTGGGTGTTGG 61.960 66.667 0.00 0.00 0.00 3.77
669 671 4.622456 GCGTGCGGTTGGGTGTTG 62.622 66.667 0.00 0.00 0.00 3.33
674 676 3.417275 TTTTGTGCGTGCGGTTGGG 62.417 57.895 0.00 0.00 0.00 4.12
831 867 4.447342 GGTACGGGGTCTCGGGGA 62.447 72.222 0.00 0.00 0.00 4.81
1761 1834 0.532573 GCTGAGGGTGAAGACGATGA 59.467 55.000 0.00 0.00 0.00 2.92
1764 1837 1.228894 AGGCTGAGGGTGAAGACGA 60.229 57.895 0.00 0.00 0.00 4.20
2123 2207 1.817941 GCACGGCGACCCACATTAT 60.818 57.895 16.62 0.00 0.00 1.28
2124 2208 2.435234 GCACGGCGACCCACATTA 60.435 61.111 16.62 0.00 0.00 1.90
2177 2262 2.755103 GGATTCTGGGCCAACTTTACTG 59.245 50.000 8.04 0.00 0.00 2.74
2234 2319 7.800767 TCTACTGTTACGTGTCAAAGTACTAG 58.199 38.462 0.00 0.00 0.00 2.57
2235 2320 7.442364 ACTCTACTGTTACGTGTCAAAGTACTA 59.558 37.037 0.00 0.00 0.00 1.82
2236 2321 6.261826 ACTCTACTGTTACGTGTCAAAGTACT 59.738 38.462 0.00 0.00 0.00 2.73
2237 2322 6.433766 ACTCTACTGTTACGTGTCAAAGTAC 58.566 40.000 0.00 0.00 0.00 2.73
2238 2323 6.624352 ACTCTACTGTTACGTGTCAAAGTA 57.376 37.500 0.00 0.00 0.00 2.24
2239 2324 5.511234 ACTCTACTGTTACGTGTCAAAGT 57.489 39.130 0.00 0.00 0.00 2.66
2240 2325 6.432936 TGTACTCTACTGTTACGTGTCAAAG 58.567 40.000 0.00 0.00 0.00 2.77
2255 2340 7.820578 ATACAATACCACTCCTGTACTCTAC 57.179 40.000 0.00 0.00 0.00 2.59
2258 2343 6.875076 ACAATACAATACCACTCCTGTACTC 58.125 40.000 0.00 0.00 0.00 2.59
2336 2421 1.828081 CAGCAGCATCTCAGGCCTA 59.172 57.895 3.98 0.00 0.00 3.93
2349 2434 0.108472 TACACTAGCAGCAGCAGCAG 60.108 55.000 12.92 9.67 45.49 4.24
2350 2435 0.538584 ATACACTAGCAGCAGCAGCA 59.461 50.000 12.92 0.00 45.49 4.41
2351 2436 1.216122 GATACACTAGCAGCAGCAGC 58.784 55.000 3.17 0.46 45.49 5.25
2352 2437 2.591571 TGATACACTAGCAGCAGCAG 57.408 50.000 3.17 1.45 45.49 4.24
2502 2591 3.243907 ACAAAAGTGGAGACGAGAAGAGG 60.244 47.826 0.00 0.00 0.00 3.69
2532 2629 4.391523 GGCAAACAAAGAACAAAAGAAGCA 59.608 37.500 0.00 0.00 0.00 3.91
2533 2630 4.631377 AGGCAAACAAAGAACAAAAGAAGC 59.369 37.500 0.00 0.00 0.00 3.86
2534 2631 7.009540 CACTAGGCAAACAAAGAACAAAAGAAG 59.990 37.037 0.00 0.00 0.00 2.85
2535 2632 6.811170 CACTAGGCAAACAAAGAACAAAAGAA 59.189 34.615 0.00 0.00 0.00 2.52
2539 2636 5.652994 ACACTAGGCAAACAAAGAACAAA 57.347 34.783 0.00 0.00 0.00 2.83
2548 2645 3.244630 ACCGGATTAACACTAGGCAAACA 60.245 43.478 9.46 0.00 0.00 2.83
2555 2652 5.699458 ACACTTCAAACCGGATTAACACTAG 59.301 40.000 9.46 0.00 0.00 2.57
2557 2654 4.274950 CACACTTCAAACCGGATTAACACT 59.725 41.667 9.46 0.00 0.00 3.55
2562 2659 3.142951 CACCACACTTCAAACCGGATTA 58.857 45.455 9.46 0.00 0.00 1.75
2568 2665 3.317993 ACATTAGCACCACACTTCAAACC 59.682 43.478 0.00 0.00 0.00 3.27
2569 2666 4.275936 AGACATTAGCACCACACTTCAAAC 59.724 41.667 0.00 0.00 0.00 2.93
2580 2677 7.816031 TGTAACTTGTAAGTAGACATTAGCACC 59.184 37.037 0.00 0.00 38.57 5.01
2587 2684 8.883731 GCATCATTGTAACTTGTAAGTAGACAT 58.116 33.333 11.11 3.12 38.57 3.06
2589 2686 8.480643 AGCATCATTGTAACTTGTAAGTAGAC 57.519 34.615 0.00 1.03 38.57 2.59
2592 2689 8.879759 GCTTAGCATCATTGTAACTTGTAAGTA 58.120 33.333 0.00 0.00 38.57 2.24
2593 2690 7.607991 AGCTTAGCATCATTGTAACTTGTAAGT 59.392 33.333 7.07 0.00 42.04 2.24
2600 2697 7.331026 TCTGTTAGCTTAGCATCATTGTAACT 58.669 34.615 7.07 0.00 0.00 2.24
2601 2698 7.278868 ACTCTGTTAGCTTAGCATCATTGTAAC 59.721 37.037 7.07 5.25 0.00 2.50
2625 2722 8.859090 TGTTAAACCAAAAAGATCATGATCACT 58.141 29.630 31.99 18.74 40.22 3.41
3054 3152 3.178611 GGAGGGCGGGGGATCATT 61.179 66.667 0.00 0.00 0.00 2.57
3055 3153 3.818105 ATGGAGGGCGGGGGATCAT 62.818 63.158 0.00 0.00 0.00 2.45
3066 3164 3.502621 ATGATGGCGGCATGGAGGG 62.503 63.158 30.87 0.00 0.00 4.30
3067 3165 1.970114 GATGATGGCGGCATGGAGG 60.970 63.158 30.87 0.00 0.00 4.30
3068 3166 0.820482 TTGATGATGGCGGCATGGAG 60.820 55.000 30.87 0.00 0.00 3.86
3069 3167 1.102809 GTTGATGATGGCGGCATGGA 61.103 55.000 30.87 15.83 0.00 3.41
3070 3168 1.361271 GTTGATGATGGCGGCATGG 59.639 57.895 30.87 0.00 0.00 3.66
3071 3169 1.361271 GGTTGATGATGGCGGCATG 59.639 57.895 30.87 0.00 0.00 4.06
3072 3170 1.076850 TGGTTGATGATGGCGGCAT 60.077 52.632 26.11 26.11 0.00 4.40
3073 3171 1.750018 CTGGTTGATGATGGCGGCA 60.750 57.895 16.34 16.34 0.00 5.69
3074 3172 1.718757 GACTGGTTGATGATGGCGGC 61.719 60.000 0.00 0.00 0.00 6.53
3075 3173 1.431488 CGACTGGTTGATGATGGCGG 61.431 60.000 0.00 0.00 0.00 6.13
3076 3174 0.740868 ACGACTGGTTGATGATGGCG 60.741 55.000 0.00 0.00 0.00 5.69
3077 3175 1.453155 AACGACTGGTTGATGATGGC 58.547 50.000 0.00 0.00 37.50 4.40
3078 3176 3.861840 AGTAACGACTGGTTGATGATGG 58.138 45.455 0.00 0.00 39.75 3.51
3079 3177 5.862924 AAAGTAACGACTGGTTGATGATG 57.137 39.130 0.00 0.00 39.75 3.07
3120 3218 2.174349 CGTTTGCTCGCTTGCTCC 59.826 61.111 0.00 0.00 0.00 4.70
3154 3253 0.248215 CCAAATCTTGATGCCGACGC 60.248 55.000 0.00 0.00 0.00 5.19
3158 3257 1.202177 CCGTTCCAAATCTTGATGCCG 60.202 52.381 0.00 0.00 0.00 5.69
3182 3281 2.205074 CTTGACCCGAAGAATCCATCG 58.795 52.381 0.00 0.00 38.74 3.84
3225 3324 1.306296 GCCCAGCCTCCCAACAATA 59.694 57.895 0.00 0.00 0.00 1.90
3240 3339 0.527817 CTACGACTCAATCACGGCCC 60.528 60.000 0.00 0.00 0.00 5.80
3241 3340 0.172803 ACTACGACTCAATCACGGCC 59.827 55.000 0.00 0.00 0.00 6.13
3242 3341 1.135489 TCACTACGACTCAATCACGGC 60.135 52.381 0.00 0.00 0.00 5.68
3243 3342 2.913777 TCACTACGACTCAATCACGG 57.086 50.000 0.00 0.00 0.00 4.94
3244 3343 3.786576 GTCATCACTACGACTCAATCACG 59.213 47.826 0.00 0.00 0.00 4.35
3254 3353 7.569639 AATTCTAGCTAAGTCATCACTACGA 57.430 36.000 0.00 0.00 30.14 3.43
3255 3354 7.915923 TGAAATTCTAGCTAAGTCATCACTACG 59.084 37.037 0.00 0.00 30.14 3.51
3308 3407 1.032114 ATTTGCTACGGCTTGGCTCC 61.032 55.000 0.35 0.00 39.59 4.70
3321 3420 0.177141 GACATGGGCATGCATTTGCT 59.823 50.000 21.36 4.26 42.39 3.91
3322 3421 1.149361 CGACATGGGCATGCATTTGC 61.149 55.000 21.36 3.60 42.39 3.68
3323 3422 1.149361 GCGACATGGGCATGCATTTG 61.149 55.000 21.36 14.94 42.39 2.32
3324 3423 1.142314 GCGACATGGGCATGCATTT 59.858 52.632 21.36 0.00 42.39 2.32
3325 3424 1.755395 AGCGACATGGGCATGCATT 60.755 52.632 21.36 0.00 42.39 3.56
3326 3425 2.124024 AGCGACATGGGCATGCAT 60.124 55.556 21.36 1.70 42.39 3.96
3443 3545 2.494445 CTACTGCCGGCGATCACA 59.506 61.111 23.90 0.87 0.00 3.58
3473 3575 6.768483 TGATCTACACAGATAGAGAGAGAGG 58.232 44.000 0.00 0.00 41.78 3.69
3484 3588 4.662468 ATCGCACTTGATCTACACAGAT 57.338 40.909 0.00 0.00 44.51 2.90
3488 3592 3.971150 AGCTATCGCACTTGATCTACAC 58.029 45.455 0.00 0.00 39.10 2.90
3490 3594 5.631512 CCTAAAGCTATCGCACTTGATCTAC 59.368 44.000 0.00 0.00 39.10 2.59
3583 3693 0.668401 ACAACGCCGCAAGTAGGTAC 60.668 55.000 0.00 0.00 0.00 3.34
3594 3704 1.495584 CCCGATCCAATACAACGCCG 61.496 60.000 0.00 0.00 0.00 6.46
3706 3828 1.006043 GGGAGAAGGGCCTAGCTTTTT 59.994 52.381 6.41 0.00 0.00 1.94
3707 3829 0.626382 GGGAGAAGGGCCTAGCTTTT 59.374 55.000 6.41 0.00 0.00 2.27
3708 3830 1.627297 CGGGAGAAGGGCCTAGCTTT 61.627 60.000 6.41 0.00 0.00 3.51
3709 3831 2.066999 CGGGAGAAGGGCCTAGCTT 61.067 63.158 6.41 0.00 0.00 3.74
3710 3832 2.444895 CGGGAGAAGGGCCTAGCT 60.445 66.667 6.41 7.66 0.00 3.32
3711 3833 2.764547 ACGGGAGAAGGGCCTAGC 60.765 66.667 6.41 1.51 0.00 3.42
3712 3834 2.435693 CCACGGGAGAAGGGCCTAG 61.436 68.421 6.41 0.00 0.00 3.02
3713 3835 2.365105 CCACGGGAGAAGGGCCTA 60.365 66.667 6.41 0.00 0.00 3.93
3714 3836 4.332543 TCCACGGGAGAAGGGCCT 62.333 66.667 0.00 0.00 0.00 5.19
3715 3837 4.097361 GTCCACGGGAGAAGGGCC 62.097 72.222 0.00 0.00 29.39 5.80
3716 3838 2.593956 AAGTCCACGGGAGAAGGGC 61.594 63.158 0.00 0.00 34.35 5.19
3717 3839 1.192146 TCAAGTCCACGGGAGAAGGG 61.192 60.000 0.00 0.00 29.39 3.95
3718 3840 0.037232 GTCAAGTCCACGGGAGAAGG 60.037 60.000 0.00 0.00 29.39 3.46
3719 3841 0.969894 AGTCAAGTCCACGGGAGAAG 59.030 55.000 0.00 0.00 29.39 2.85
3720 3842 0.679505 CAGTCAAGTCCACGGGAGAA 59.320 55.000 0.00 0.00 29.39 2.87
3721 3843 1.185618 CCAGTCAAGTCCACGGGAGA 61.186 60.000 0.00 0.00 31.17 3.71
3722 3844 1.293498 CCAGTCAAGTCCACGGGAG 59.707 63.158 0.00 0.00 31.17 4.30
3794 3916 1.007580 TGGAGAGAGATCGACGAACG 58.992 55.000 0.00 0.00 44.09 3.95
3795 3917 2.420722 ACTTGGAGAGAGATCGACGAAC 59.579 50.000 0.00 0.00 0.00 3.95
3796 3918 2.712709 ACTTGGAGAGAGATCGACGAA 58.287 47.619 0.00 0.00 0.00 3.85
3833 3955 2.175035 TTACGGGGAAAGGCGAGTGG 62.175 60.000 0.00 0.00 0.00 4.00
3834 3956 0.320946 TTTACGGGGAAAGGCGAGTG 60.321 55.000 0.00 0.00 0.00 3.51
3849 3978 8.727910 ACTAATTTTAGTACAAGCTGCCTTTAC 58.272 33.333 1.15 0.00 41.92 2.01
3881 4010 9.494271 GCAGGATCACTTAATTCACAAGATATA 57.506 33.333 0.00 0.00 0.00 0.86
3882 4011 8.216423 AGCAGGATCACTTAATTCACAAGATAT 58.784 33.333 0.00 0.00 0.00 1.63
3883 4012 7.568349 AGCAGGATCACTTAATTCACAAGATA 58.432 34.615 0.00 0.00 0.00 1.98
3884 4013 6.421485 AGCAGGATCACTTAATTCACAAGAT 58.579 36.000 0.00 0.00 0.00 2.40
3885 4014 5.809001 AGCAGGATCACTTAATTCACAAGA 58.191 37.500 0.00 0.00 0.00 3.02
3886 4015 6.595326 TGTAGCAGGATCACTTAATTCACAAG 59.405 38.462 0.00 0.00 0.00 3.16
3887 4016 6.472016 TGTAGCAGGATCACTTAATTCACAA 58.528 36.000 0.00 0.00 0.00 3.33
3888 4017 6.048732 TGTAGCAGGATCACTTAATTCACA 57.951 37.500 0.00 0.00 0.00 3.58
3889 4018 8.839310 ATATGTAGCAGGATCACTTAATTCAC 57.161 34.615 0.00 0.00 0.00 3.18
3895 4024 9.314133 ACAAGATATATGTAGCAGGATCACTTA 57.686 33.333 0.00 0.00 0.00 2.24
3896 4025 8.093307 CACAAGATATATGTAGCAGGATCACTT 58.907 37.037 0.00 0.00 0.00 3.16
3897 4026 7.452813 TCACAAGATATATGTAGCAGGATCACT 59.547 37.037 0.00 0.00 0.00 3.41
3898 4027 7.606349 TCACAAGATATATGTAGCAGGATCAC 58.394 38.462 0.00 0.00 0.00 3.06
3899 4028 7.781324 TCACAAGATATATGTAGCAGGATCA 57.219 36.000 0.00 0.00 0.00 2.92
3921 4050 5.988561 GGTGTGCCAAAAATCACTTAATTCA 59.011 36.000 0.00 0.00 34.49 2.57
3931 4060 7.319646 TGAAATGTATAGGTGTGCCAAAAATC 58.680 34.615 0.00 0.00 37.19 2.17
3938 4067 6.404734 CCTCTTTTGAAATGTATAGGTGTGCC 60.405 42.308 0.00 0.00 0.00 5.01
3939 4068 6.374333 TCCTCTTTTGAAATGTATAGGTGTGC 59.626 38.462 0.00 0.00 0.00 4.57
3942 4071 8.669243 GTCTTCCTCTTTTGAAATGTATAGGTG 58.331 37.037 0.00 0.00 0.00 4.00
3943 4072 8.383175 TGTCTTCCTCTTTTGAAATGTATAGGT 58.617 33.333 0.00 0.00 0.00 3.08
3944 4073 8.792830 TGTCTTCCTCTTTTGAAATGTATAGG 57.207 34.615 0.00 0.00 0.00 2.57
3966 4096 6.598753 AGCATATTATACGTTGTGGTTGTC 57.401 37.500 0.00 0.00 0.00 3.18
3967 4097 6.995511 AAGCATATTATACGTTGTGGTTGT 57.004 33.333 0.00 0.00 0.00 3.32
3981 4111 4.062293 GTGGCCGATGTGTAAGCATATTA 58.938 43.478 0.00 0.00 0.00 0.98
3986 4116 0.391130 GAGTGGCCGATGTGTAAGCA 60.391 55.000 0.00 0.00 0.00 3.91
3988 4118 3.319405 AGATAGAGTGGCCGATGTGTAAG 59.681 47.826 0.00 0.00 0.00 2.34
3998 4128 7.501844 AGTTTTATCAGTTAGATAGAGTGGCC 58.498 38.462 0.00 0.00 40.20 5.36
4024 4154 1.601162 GCAATGCGCAGGGTATCATTG 60.601 52.381 18.32 13.86 45.00 2.82
4025 4155 0.670162 GCAATGCGCAGGGTATCATT 59.330 50.000 18.32 0.00 41.79 2.57
4034 4164 2.838386 ATTTCTGTAGCAATGCGCAG 57.162 45.000 18.32 20.63 46.13 5.18
4035 4165 2.228582 ACAATTTCTGTAGCAATGCGCA 59.771 40.909 14.96 14.96 46.13 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.