Multiple sequence alignment - TraesCS2A01G548400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G548400 chr2A 100.000 2534 0 0 1 2534 755999597 756002130 0.000000e+00 4680.0
1 TraesCS2A01G548400 chr2A 94.340 424 16 3 1818 2236 756015410 756015830 0.000000e+00 643.0
2 TraesCS2A01G548400 chr2A 96.615 384 13 0 1 384 376105066 376105449 2.750000e-179 638.0
3 TraesCS2A01G548400 chr2A 96.615 384 13 0 1 384 573373624 573374007 2.750000e-179 638.0
4 TraesCS2A01G548400 chr2A 94.667 300 16 0 2235 2534 756015976 756016275 1.370000e-127 466.0
5 TraesCS2A01G548400 chr2A 78.230 712 123 13 416 1104 756948018 756947316 6.480000e-116 427.0
6 TraesCS2A01G548400 chr2A 77.641 568 107 13 879 1439 756911560 756911006 6.760000e-86 327.0
7 TraesCS2A01G548400 chr2A 85.930 199 25 1 1243 1441 756947186 756946991 2.550000e-50 209.0
8 TraesCS2A01G548400 chr2A 86.339 183 17 6 2063 2240 756929642 756929463 2.570000e-45 193.0
9 TraesCS2A01G548400 chr4A 97.396 384 10 0 1 384 27637466 27637083 0.000000e+00 654.0
10 TraesCS2A01G548400 chr4A 96.615 384 13 0 1 384 545231373 545230990 2.750000e-179 638.0
11 TraesCS2A01G548400 chr4A 87.072 263 21 12 2278 2532 724395716 724395459 4.130000e-73 285.0
12 TraesCS2A01G548400 chr4A 94.737 38 2 0 372 409 257896631 257896594 2.720000e-05 60.2
13 TraesCS2A01G548400 chr5A 96.641 387 13 0 1 387 79671207 79670821 0.000000e+00 643.0
14 TraesCS2A01G548400 chr5A 96.354 384 14 0 1 384 309952966 309953349 1.280000e-177 632.0
15 TraesCS2A01G548400 chr5A 96.094 384 15 0 1 384 40272501 40272118 5.950000e-176 627.0
16 TraesCS2A01G548400 chr5A 86.792 265 21 13 2278 2534 488000106 488000364 1.480000e-72 283.0
17 TraesCS2A01G548400 chr5A 78.333 180 39 0 1256 1435 552300491 552300670 1.590000e-22 117.0
18 TraesCS2A01G548400 chrUn 96.354 384 13 1 1 384 270744601 270744219 4.600000e-177 630.0
19 TraesCS2A01G548400 chr1A 96.094 384 15 0 1 384 4442215 4442598 5.950000e-176 627.0
20 TraesCS2A01G548400 chr1A 90.909 44 2 2 367 409 270279680 270279722 9.790000e-05 58.4
21 TraesCS2A01G548400 chr2D 78.368 1017 180 22 433 1434 625185672 625186663 7.700000e-175 623.0
22 TraesCS2A01G548400 chr2D 77.569 1012 194 23 433 1433 625115895 625116884 4.700000e-162 580.0
23 TraesCS2A01G548400 chr2D 76.963 968 176 25 433 1373 625358544 625359491 2.250000e-140 508.0
24 TraesCS2A01G548400 chr2D 78.582 663 113 21 427 1074 624796994 624797642 6.520000e-111 411.0
25 TraesCS2A01G548400 chr2D 74.576 1062 209 38 413 1439 625395642 625396677 2.350000e-110 409.0
26 TraesCS2A01G548400 chr2D 78.487 595 92 20 876 1445 625244730 625245313 8.620000e-95 357.0
27 TraesCS2A01G548400 chr2D 86.782 174 21 2 1251 1423 624797852 624798024 2.570000e-45 193.0
28 TraesCS2A01G548400 chr2D 85.792 183 17 6 2063 2240 625190480 625190658 4.300000e-43 185.0
29 TraesCS2A01G548400 chr2D 85.946 185 13 11 2063 2240 625389278 625389456 4.300000e-43 185.0
30 TraesCS2A01G548400 chr2D 75.616 365 44 22 1591 1943 625378293 625378624 3.400000e-29 139.0
31 TraesCS2A01G548400 chr2D 77.099 262 41 16 2278 2531 314818814 314819064 1.580000e-27 134.0
32 TraesCS2A01G548400 chr2B 76.488 1008 202 21 431 1423 767305166 767306153 1.340000e-142 516.0
33 TraesCS2A01G548400 chr2B 77.840 713 129 10 413 1104 767381286 767381990 5.040000e-112 414.0
34 TraesCS2A01G548400 chr2B 73.979 1053 213 35 427 1439 767423795 767424826 1.110000e-98 370.0
35 TraesCS2A01G548400 chr2B 90.110 182 15 3 2235 2415 141250045 141250224 1.520000e-57 233.0
36 TraesCS2A01G548400 chr2B 87.437 199 22 1 1243 1441 767382120 767382315 2.540000e-55 226.0
37 TraesCS2A01G548400 chr2B 84.358 179 20 6 2063 2236 767405743 767405918 4.340000e-38 169.0
38 TraesCS2A01G548400 chr7A 96.000 300 12 0 2235 2534 623438076 623437777 2.930000e-134 488.0
39 TraesCS2A01G548400 chr7A 97.826 184 4 0 2235 2418 623433185 623433002 4.070000e-83 318.0
40 TraesCS2A01G548400 chr7A 87.170 265 19 14 2278 2534 54851365 54851108 1.150000e-73 287.0
41 TraesCS2A01G548400 chr7A 90.909 44 4 0 366 409 356337008 356337051 2.720000e-05 60.2
42 TraesCS2A01G548400 chr7A 90.476 42 3 1 369 409 199022302 199022343 1.000000e-03 54.7
43 TraesCS2A01G548400 chr7B 88.333 300 23 9 2238 2534 651450042 651449752 1.440000e-92 350.0
44 TraesCS2A01G548400 chr7B 77.778 243 41 12 2301 2534 681572216 681572454 1.220000e-28 137.0
45 TraesCS2A01G548400 chr7B 100.000 34 0 0 376 409 520007588 520007555 2.100000e-06 63.9
46 TraesCS2A01G548400 chr6A 87.925 265 18 13 2278 2534 107820422 107820164 1.470000e-77 300.0
47 TraesCS2A01G548400 chr6A 93.182 44 1 2 368 409 187809568 187809525 2.100000e-06 63.9
48 TraesCS2A01G548400 chr6A 88.636 44 5 0 366 409 299200819 299200776 1.000000e-03 54.7
49 TraesCS2A01G548400 chr1B 86.842 266 21 13 2278 2534 526186575 526186315 4.130000e-73 285.0
50 TraesCS2A01G548400 chr6B 79.518 249 34 14 2291 2534 626483055 626482819 7.250000e-36 161.0
51 TraesCS2A01G548400 chr5D 77.419 186 40 2 1238 1422 445489922 445489738 2.670000e-20 110.0
52 TraesCS2A01G548400 chr5D 76.667 180 40 2 1256 1434 445403493 445403315 5.770000e-17 99.0
53 TraesCS2A01G548400 chr3A 97.297 37 1 0 374 410 509916237 509916273 2.100000e-06 63.9
54 TraesCS2A01G548400 chr5B 92.683 41 1 2 371 409 110991140 110991180 9.790000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G548400 chr2A 755999597 756002130 2533 False 4680.0 4680 100.0000 1 2534 1 chr2A.!!$F3 2533
1 TraesCS2A01G548400 chr2A 756015410 756016275 865 False 554.5 643 94.5035 1818 2534 2 chr2A.!!$F4 716
2 TraesCS2A01G548400 chr2A 756911006 756911560 554 True 327.0 327 77.6410 879 1439 1 chr2A.!!$R1 560
3 TraesCS2A01G548400 chr2A 756946991 756948018 1027 True 318.0 427 82.0800 416 1441 2 chr2A.!!$R3 1025
4 TraesCS2A01G548400 chr2D 625115895 625116884 989 False 580.0 580 77.5690 433 1433 1 chr2D.!!$F2 1000
5 TraesCS2A01G548400 chr2D 625358544 625359491 947 False 508.0 508 76.9630 433 1373 1 chr2D.!!$F4 940
6 TraesCS2A01G548400 chr2D 625395642 625396677 1035 False 409.0 409 74.5760 413 1439 1 chr2D.!!$F7 1026
7 TraesCS2A01G548400 chr2D 625185672 625190658 4986 False 404.0 623 82.0800 433 2240 2 chr2D.!!$F9 1807
8 TraesCS2A01G548400 chr2D 625244730 625245313 583 False 357.0 357 78.4870 876 1445 1 chr2D.!!$F3 569
9 TraesCS2A01G548400 chr2D 624796994 624798024 1030 False 302.0 411 82.6820 427 1423 2 chr2D.!!$F8 996
10 TraesCS2A01G548400 chr2B 767305166 767306153 987 False 516.0 516 76.4880 431 1423 1 chr2B.!!$F2 992
11 TraesCS2A01G548400 chr2B 767423795 767424826 1031 False 370.0 370 73.9790 427 1439 1 chr2B.!!$F4 1012
12 TraesCS2A01G548400 chr2B 767381286 767382315 1029 False 320.0 414 82.6385 413 1441 2 chr2B.!!$F5 1028

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.031721 GGTCTTGCCGGGTACTATCG 59.968 60.0 2.18 0.0 0.00 2.92 F
558 561 0.037326 CTGCTGGAGCTCGTTTACCA 60.037 55.0 7.83 0.0 42.66 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1394 1542 0.178068 CGGAAATGTCTCCATCCCGT 59.822 55.0 0.00 0.0 34.91 5.28 R
2381 5921 0.179084 GCGTATGCACCTTAGGCAGA 60.179 55.0 0.89 0.0 45.68 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.145551 GCCTGGCCCATTCTGCAG 61.146 66.667 7.63 7.63 0.00 4.41
33 34 2.357836 CCTGGCCCATTCTGCAGT 59.642 61.111 14.67 0.00 0.00 4.40
34 35 1.751927 CCTGGCCCATTCTGCAGTC 60.752 63.158 14.67 0.00 0.00 3.51
35 36 1.302285 CTGGCCCATTCTGCAGTCT 59.698 57.895 14.67 0.00 0.00 3.24
36 37 0.747283 CTGGCCCATTCTGCAGTCTC 60.747 60.000 14.67 0.00 0.00 3.36
37 38 1.452833 GGCCCATTCTGCAGTCTCC 60.453 63.158 14.67 4.22 0.00 3.71
38 39 1.817099 GCCCATTCTGCAGTCTCCG 60.817 63.158 14.67 1.09 0.00 4.63
39 40 1.817099 CCCATTCTGCAGTCTCCGC 60.817 63.158 14.67 0.00 0.00 5.54
40 41 2.169789 CCATTCTGCAGTCTCCGCG 61.170 63.158 14.67 0.00 0.00 6.46
41 42 2.169789 CATTCTGCAGTCTCCGCGG 61.170 63.158 22.12 22.12 37.08 6.46
42 43 3.376935 ATTCTGCAGTCTCCGCGGG 62.377 63.158 27.83 16.54 36.37 6.13
47 48 3.764466 CAGTCTCCGCGGGCTCTT 61.764 66.667 27.83 4.66 0.00 2.85
48 49 3.453679 AGTCTCCGCGGGCTCTTC 61.454 66.667 27.83 10.19 0.00 2.87
49 50 4.856607 GTCTCCGCGGGCTCTTCG 62.857 72.222 27.83 5.36 0.00 3.79
58 59 4.083862 GGCTCTTCGCGGGTTCCT 62.084 66.667 6.13 0.00 40.44 3.36
59 60 2.047179 GCTCTTCGCGGGTTCCTT 60.047 61.111 6.13 0.00 0.00 3.36
60 61 2.391389 GCTCTTCGCGGGTTCCTTG 61.391 63.158 6.13 0.00 0.00 3.61
61 62 1.741770 CTCTTCGCGGGTTCCTTGG 60.742 63.158 6.13 0.00 0.00 3.61
62 63 2.032071 CTTCGCGGGTTCCTTGGT 59.968 61.111 6.13 0.00 0.00 3.67
63 64 2.031465 TTCGCGGGTTCCTTGGTC 59.969 61.111 6.13 0.00 0.00 4.02
64 65 2.450479 CTTCGCGGGTTCCTTGGTCT 62.450 60.000 6.13 0.00 0.00 3.85
65 66 2.032071 CGCGGGTTCCTTGGTCTT 59.968 61.111 0.00 0.00 0.00 3.01
66 67 2.325082 CGCGGGTTCCTTGGTCTTG 61.325 63.158 0.00 0.00 0.00 3.02
67 68 2.626780 GCGGGTTCCTTGGTCTTGC 61.627 63.158 0.00 0.00 0.00 4.01
68 69 1.971695 CGGGTTCCTTGGTCTTGCC 60.972 63.158 0.00 0.00 37.90 4.52
69 70 1.971695 GGGTTCCTTGGTCTTGCCG 60.972 63.158 0.00 0.00 41.21 5.69
70 71 1.971695 GGTTCCTTGGTCTTGCCGG 60.972 63.158 0.00 0.00 41.21 6.13
71 72 1.971695 GTTCCTTGGTCTTGCCGGG 60.972 63.158 2.18 0.00 41.21 5.73
72 73 2.457323 TTCCTTGGTCTTGCCGGGT 61.457 57.895 2.18 0.00 41.21 5.28
73 74 1.128809 TTCCTTGGTCTTGCCGGGTA 61.129 55.000 2.18 0.00 41.21 3.69
74 75 1.376812 CCTTGGTCTTGCCGGGTAC 60.377 63.158 2.18 0.00 41.21 3.34
75 76 1.677552 CTTGGTCTTGCCGGGTACT 59.322 57.895 2.18 0.00 41.21 2.73
76 77 0.899720 CTTGGTCTTGCCGGGTACTA 59.100 55.000 2.18 0.00 41.21 1.82
77 78 1.485066 CTTGGTCTTGCCGGGTACTAT 59.515 52.381 2.18 0.00 41.21 2.12
78 79 1.117150 TGGTCTTGCCGGGTACTATC 58.883 55.000 2.18 0.00 41.21 2.08
79 80 0.031721 GGTCTTGCCGGGTACTATCG 59.968 60.000 2.18 0.00 0.00 2.92
89 90 3.898529 CGGGTACTATCGGAAGTTCATC 58.101 50.000 5.01 0.00 0.00 2.92
90 91 3.305199 CGGGTACTATCGGAAGTTCATCC 60.305 52.174 5.01 0.00 36.05 3.51
98 99 2.491675 GGAAGTTCATCCGGGAGTTT 57.508 50.000 0.00 0.00 0.00 2.66
99 100 2.084546 GGAAGTTCATCCGGGAGTTTG 58.915 52.381 0.00 0.00 0.00 2.93
100 101 2.084546 GAAGTTCATCCGGGAGTTTGG 58.915 52.381 0.00 0.00 0.00 3.28
101 102 0.322546 AGTTCATCCGGGAGTTTGGC 60.323 55.000 0.00 0.00 0.00 4.52
102 103 1.001393 TTCATCCGGGAGTTTGGCC 60.001 57.895 0.00 0.00 0.00 5.36
103 104 1.497309 TTCATCCGGGAGTTTGGCCT 61.497 55.000 3.32 0.00 0.00 5.19
104 105 1.000896 CATCCGGGAGTTTGGCCTT 60.001 57.895 3.32 0.00 0.00 4.35
105 106 0.254747 CATCCGGGAGTTTGGCCTTA 59.745 55.000 3.32 0.00 0.00 2.69
106 107 1.133792 CATCCGGGAGTTTGGCCTTAT 60.134 52.381 3.32 0.00 0.00 1.73
107 108 0.544697 TCCGGGAGTTTGGCCTTATC 59.455 55.000 3.32 0.00 0.00 1.75
108 109 0.814010 CCGGGAGTTTGGCCTTATCG 60.814 60.000 3.32 0.00 0.00 2.92
109 110 1.436983 CGGGAGTTTGGCCTTATCGC 61.437 60.000 3.32 4.61 0.00 4.58
110 111 1.436983 GGGAGTTTGGCCTTATCGCG 61.437 60.000 3.32 0.00 0.00 5.87
111 112 1.436983 GGAGTTTGGCCTTATCGCGG 61.437 60.000 6.13 0.00 0.00 6.46
112 113 2.048312 GAGTTTGGCCTTATCGCGGC 62.048 60.000 6.13 0.00 46.83 6.53
133 134 4.838486 GCTCACGCGTCTCCTCCG 62.838 72.222 9.86 0.00 0.00 4.63
134 135 3.432588 CTCACGCGTCTCCTCCGT 61.433 66.667 9.86 0.00 35.29 4.69
135 136 3.384014 CTCACGCGTCTCCTCCGTC 62.384 68.421 9.86 0.00 32.18 4.79
136 137 4.813526 CACGCGTCTCCTCCGTCG 62.814 72.222 9.86 0.00 32.18 5.12
140 141 4.517703 CGTCTCCTCCGTCGCGAC 62.518 72.222 28.96 28.96 0.00 5.19
150 151 2.126424 GTCGCGACGCCTTCTCTT 60.126 61.111 25.19 0.00 0.00 2.85
151 152 2.126463 TCGCGACGCCTTCTCTTG 60.126 61.111 15.34 0.00 0.00 3.02
152 153 3.181967 CGCGACGCCTTCTCTTGG 61.182 66.667 15.34 0.00 0.00 3.61
153 154 2.815647 GCGACGCCTTCTCTTGGG 60.816 66.667 9.14 0.00 0.00 4.12
154 155 2.970639 CGACGCCTTCTCTTGGGA 59.029 61.111 0.00 0.00 0.00 4.37
155 156 1.517832 CGACGCCTTCTCTTGGGAT 59.482 57.895 0.00 0.00 0.00 3.85
156 157 0.807667 CGACGCCTTCTCTTGGGATG 60.808 60.000 0.00 0.00 0.00 3.51
157 158 1.078143 ACGCCTTCTCTTGGGATGC 60.078 57.895 0.00 0.00 0.00 3.91
158 159 2.176273 CGCCTTCTCTTGGGATGCG 61.176 63.158 0.00 0.00 33.24 4.73
159 160 1.821332 GCCTTCTCTTGGGATGCGG 60.821 63.158 0.00 0.00 0.00 5.69
160 161 1.907739 CCTTCTCTTGGGATGCGGA 59.092 57.895 0.00 0.00 0.00 5.54
161 162 0.179062 CCTTCTCTTGGGATGCGGAG 60.179 60.000 0.00 0.00 0.00 4.63
162 163 0.179062 CTTCTCTTGGGATGCGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
163 164 2.203126 CTCTTGGGATGCGGAGGC 60.203 66.667 0.00 0.00 40.52 4.70
164 165 3.764160 CTCTTGGGATGCGGAGGCC 62.764 68.421 0.00 0.00 38.85 5.19
165 166 4.113815 CTTGGGATGCGGAGGCCA 62.114 66.667 5.01 0.00 38.85 5.36
166 167 4.424711 TTGGGATGCGGAGGCCAC 62.425 66.667 5.01 0.00 38.85 5.01
168 169 4.115199 GGGATGCGGAGGCCACTT 62.115 66.667 5.01 0.00 38.85 3.16
169 170 2.514824 GGATGCGGAGGCCACTTC 60.515 66.667 5.01 0.00 38.85 3.01
170 171 2.268920 GATGCGGAGGCCACTTCA 59.731 61.111 5.01 1.01 38.85 3.02
171 172 1.817099 GATGCGGAGGCCACTTCAG 60.817 63.158 5.01 0.00 38.85 3.02
172 173 3.984193 ATGCGGAGGCCACTTCAGC 62.984 63.158 5.01 7.13 38.85 4.26
173 174 4.704833 GCGGAGGCCACTTCAGCA 62.705 66.667 5.01 0.00 0.00 4.41
174 175 2.270205 CGGAGGCCACTTCAGCAT 59.730 61.111 5.01 0.00 0.00 3.79
175 176 1.377725 CGGAGGCCACTTCAGCATT 60.378 57.895 5.01 0.00 0.00 3.56
176 177 1.372087 CGGAGGCCACTTCAGCATTC 61.372 60.000 5.01 0.00 0.00 2.67
177 178 1.372087 GGAGGCCACTTCAGCATTCG 61.372 60.000 5.01 0.00 0.00 3.34
178 179 0.391661 GAGGCCACTTCAGCATTCGA 60.392 55.000 5.01 0.00 0.00 3.71
179 180 0.392193 AGGCCACTTCAGCATTCGAG 60.392 55.000 5.01 0.00 0.00 4.04
180 181 1.372087 GGCCACTTCAGCATTCGAGG 61.372 60.000 0.00 0.00 0.00 4.63
181 182 1.986575 GCCACTTCAGCATTCGAGGC 61.987 60.000 3.19 3.19 0.00 4.70
182 183 1.372087 CCACTTCAGCATTCGAGGCC 61.372 60.000 0.00 0.00 0.00 5.19
183 184 1.078143 ACTTCAGCATTCGAGGCCC 60.078 57.895 0.00 0.00 0.00 5.80
184 185 1.222936 CTTCAGCATTCGAGGCCCT 59.777 57.895 0.00 0.00 0.00 5.19
185 186 0.813210 CTTCAGCATTCGAGGCCCTC 60.813 60.000 0.00 0.00 0.00 4.30
186 187 1.552799 TTCAGCATTCGAGGCCCTCA 61.553 55.000 12.13 0.00 0.00 3.86
187 188 1.078214 CAGCATTCGAGGCCCTCAA 60.078 57.895 12.13 4.88 0.00 3.02
188 189 1.078143 AGCATTCGAGGCCCTCAAC 60.078 57.895 12.13 0.00 0.00 3.18
189 190 2.464459 GCATTCGAGGCCCTCAACG 61.464 63.158 12.13 0.00 0.00 4.10
190 191 1.815421 CATTCGAGGCCCTCAACGG 60.815 63.158 12.13 0.00 0.00 4.44
199 200 4.410400 CCTCAACGGGGCCCTCAC 62.410 72.222 24.38 3.61 0.00 3.51
200 201 4.760047 CTCAACGGGGCCCTCACG 62.760 72.222 24.38 19.86 0.00 4.35
219 220 3.066190 CGGGACCCGTACTGCAGA 61.066 66.667 25.54 0.48 42.73 4.26
220 221 2.423898 CGGGACCCGTACTGCAGAT 61.424 63.158 25.54 7.41 42.73 2.90
221 222 1.144057 GGGACCCGTACTGCAGATG 59.856 63.158 23.35 9.17 0.00 2.90
222 223 1.521681 GGACCCGTACTGCAGATGC 60.522 63.158 23.35 8.73 42.50 3.91
223 224 1.521681 GACCCGTACTGCAGATGCC 60.522 63.158 23.35 3.68 41.18 4.40
224 225 2.586079 CCCGTACTGCAGATGCCG 60.586 66.667 23.35 15.32 41.18 5.69
225 226 2.586079 CCGTACTGCAGATGCCGG 60.586 66.667 23.35 20.08 41.18 6.13
226 227 2.494445 CGTACTGCAGATGCCGGA 59.506 61.111 23.35 0.00 41.18 5.14
227 228 1.878522 CGTACTGCAGATGCCGGAC 60.879 63.158 23.35 1.76 41.18 4.79
228 229 1.517832 GTACTGCAGATGCCGGACT 59.482 57.895 23.35 0.00 36.36 3.85
229 230 0.108138 GTACTGCAGATGCCGGACTT 60.108 55.000 23.35 0.00 36.36 3.01
230 231 0.175760 TACTGCAGATGCCGGACTTC 59.824 55.000 23.35 4.57 41.18 3.01
231 232 2.125552 TGCAGATGCCGGACTTCG 60.126 61.111 5.05 2.99 41.18 3.79
232 233 2.184322 GCAGATGCCGGACTTCGA 59.816 61.111 5.05 0.00 42.43 3.71
233 234 2.167861 GCAGATGCCGGACTTCGAC 61.168 63.158 5.05 0.00 42.43 4.20
234 235 1.519455 CAGATGCCGGACTTCGACC 60.519 63.158 5.05 0.00 42.43 4.79
235 236 1.682684 AGATGCCGGACTTCGACCT 60.683 57.895 5.05 0.00 42.43 3.85
236 237 1.227002 GATGCCGGACTTCGACCTC 60.227 63.158 5.05 0.00 42.43 3.85
237 238 2.630592 GATGCCGGACTTCGACCTCC 62.631 65.000 5.05 0.00 42.43 4.30
238 239 4.144703 GCCGGACTTCGACCTCCC 62.145 72.222 5.05 0.00 42.43 4.30
239 240 3.459063 CCGGACTTCGACCTCCCC 61.459 72.222 0.00 0.00 42.43 4.81
240 241 2.362632 CGGACTTCGACCTCCCCT 60.363 66.667 2.56 0.00 42.43 4.79
241 242 1.982938 CGGACTTCGACCTCCCCTT 60.983 63.158 2.56 0.00 42.43 3.95
242 243 1.898885 GGACTTCGACCTCCCCTTC 59.101 63.158 0.00 0.00 0.00 3.46
243 244 0.903454 GGACTTCGACCTCCCCTTCA 60.903 60.000 0.00 0.00 0.00 3.02
244 245 0.246910 GACTTCGACCTCCCCTTCAC 59.753 60.000 0.00 0.00 0.00 3.18
245 246 1.192803 ACTTCGACCTCCCCTTCACC 61.193 60.000 0.00 0.00 0.00 4.02
246 247 2.227089 CTTCGACCTCCCCTTCACCG 62.227 65.000 0.00 0.00 0.00 4.94
247 248 2.995574 CGACCTCCCCTTCACCGT 60.996 66.667 0.00 0.00 0.00 4.83
248 249 2.979649 GACCTCCCCTTCACCGTC 59.020 66.667 0.00 0.00 0.00 4.79
249 250 2.995574 ACCTCCCCTTCACCGTCG 60.996 66.667 0.00 0.00 0.00 5.12
250 251 2.678934 CCTCCCCTTCACCGTCGA 60.679 66.667 0.00 0.00 0.00 4.20
251 252 2.572284 CTCCCCTTCACCGTCGAC 59.428 66.667 5.18 5.18 0.00 4.20
252 253 1.977544 CTCCCCTTCACCGTCGACT 60.978 63.158 14.70 0.00 0.00 4.18
253 254 2.214181 CTCCCCTTCACCGTCGACTG 62.214 65.000 14.70 9.99 0.00 3.51
254 255 2.432628 CCCTTCACCGTCGACTGC 60.433 66.667 14.70 0.00 0.00 4.40
255 256 2.805353 CCTTCACCGTCGACTGCG 60.805 66.667 14.70 0.71 39.35 5.18
256 257 2.254350 CTTCACCGTCGACTGCGA 59.746 61.111 14.70 3.54 45.71 5.10
264 265 4.753877 TCGACTGCGACGCTTCCG 62.754 66.667 22.08 19.27 42.51 4.30
266 267 4.719369 GACTGCGACGCTTCCGGT 62.719 66.667 22.08 11.37 39.22 5.28
281 282 3.601685 GGTGCGGGGTTTGGTGTG 61.602 66.667 0.00 0.00 0.00 3.82
282 283 3.601685 GTGCGGGGTTTGGTGTGG 61.602 66.667 0.00 0.00 0.00 4.17
283 284 4.130554 TGCGGGGTTTGGTGTGGT 62.131 61.111 0.00 0.00 0.00 4.16
284 285 3.292159 GCGGGGTTTGGTGTGGTC 61.292 66.667 0.00 0.00 0.00 4.02
285 286 2.596338 CGGGGTTTGGTGTGGTCC 60.596 66.667 0.00 0.00 0.00 4.46
286 287 2.931921 GGGGTTTGGTGTGGTCCT 59.068 61.111 0.00 0.00 0.00 3.85
287 288 1.530655 GGGGTTTGGTGTGGTCCTG 60.531 63.158 0.00 0.00 0.00 3.86
288 289 2.200337 GGGTTTGGTGTGGTCCTGC 61.200 63.158 0.00 0.00 0.00 4.85
289 290 1.454847 GGTTTGGTGTGGTCCTGCA 60.455 57.895 0.00 0.00 0.00 4.41
290 291 1.733526 GTTTGGTGTGGTCCTGCAC 59.266 57.895 8.15 8.15 35.07 4.57
299 300 4.101448 GTCCTGCACCAGGGCGAT 62.101 66.667 11.10 0.00 46.58 4.58
302 303 4.100084 CTGCACCAGGGCGATGGA 62.100 66.667 13.69 0.00 43.57 3.41
303 304 4.408821 TGCACCAGGGCGATGGAC 62.409 66.667 13.69 6.35 43.57 4.02
305 306 4.489771 CACCAGGGCGATGGACCC 62.490 72.222 13.69 0.00 45.55 4.46
313 314 3.470888 CGATGGACCCCTCGCCTT 61.471 66.667 1.06 0.00 0.00 4.35
314 315 2.506472 GATGGACCCCTCGCCTTC 59.494 66.667 0.00 0.00 0.00 3.46
315 316 2.041265 ATGGACCCCTCGCCTTCT 59.959 61.111 0.00 0.00 0.00 2.85
316 317 1.616628 ATGGACCCCTCGCCTTCTT 60.617 57.895 0.00 0.00 0.00 2.52
317 318 1.627297 ATGGACCCCTCGCCTTCTTC 61.627 60.000 0.00 0.00 0.00 2.87
318 319 2.291043 GGACCCCTCGCCTTCTTCA 61.291 63.158 0.00 0.00 0.00 3.02
319 320 1.219393 GACCCCTCGCCTTCTTCAG 59.781 63.158 0.00 0.00 0.00 3.02
320 321 2.124942 CCCCTCGCCTTCTTCAGC 60.125 66.667 0.00 0.00 0.00 4.26
321 322 2.124942 CCCTCGCCTTCTTCAGCC 60.125 66.667 0.00 0.00 0.00 4.85
322 323 2.510238 CCTCGCCTTCTTCAGCCG 60.510 66.667 0.00 0.00 0.00 5.52
323 324 3.191539 CTCGCCTTCTTCAGCCGC 61.192 66.667 0.00 0.00 0.00 6.53
324 325 4.760047 TCGCCTTCTTCAGCCGCC 62.760 66.667 0.00 0.00 0.00 6.13
327 328 3.721706 CCTTCTTCAGCCGCCCCT 61.722 66.667 0.00 0.00 0.00 4.79
328 329 2.352805 CTTCTTCAGCCGCCCCTT 59.647 61.111 0.00 0.00 0.00 3.95
329 330 1.303643 CTTCTTCAGCCGCCCCTTT 60.304 57.895 0.00 0.00 0.00 3.11
330 331 1.589716 CTTCTTCAGCCGCCCCTTTG 61.590 60.000 0.00 0.00 0.00 2.77
331 332 3.752339 CTTCAGCCGCCCCTTTGC 61.752 66.667 0.00 0.00 0.00 3.68
332 333 4.284550 TTCAGCCGCCCCTTTGCT 62.285 61.111 0.00 0.00 35.25 3.91
341 342 2.753043 CCCTTTGCTGCTCGCCAT 60.753 61.111 0.00 0.00 38.05 4.40
342 343 2.768492 CCCTTTGCTGCTCGCCATC 61.768 63.158 0.00 0.00 38.05 3.51
343 344 1.748122 CCTTTGCTGCTCGCCATCT 60.748 57.895 0.00 0.00 38.05 2.90
344 345 1.310933 CCTTTGCTGCTCGCCATCTT 61.311 55.000 0.00 0.00 38.05 2.40
345 346 1.372582 CTTTGCTGCTCGCCATCTTA 58.627 50.000 0.00 0.00 38.05 2.10
346 347 1.739466 CTTTGCTGCTCGCCATCTTAA 59.261 47.619 0.00 0.00 38.05 1.85
347 348 1.819928 TTGCTGCTCGCCATCTTAAA 58.180 45.000 0.00 0.00 38.05 1.52
348 349 2.042686 TGCTGCTCGCCATCTTAAAT 57.957 45.000 0.00 0.00 38.05 1.40
349 350 2.368439 TGCTGCTCGCCATCTTAAATT 58.632 42.857 0.00 0.00 38.05 1.82
350 351 2.097954 TGCTGCTCGCCATCTTAAATTG 59.902 45.455 0.00 0.00 38.05 2.32
351 352 2.542411 GCTGCTCGCCATCTTAAATTGG 60.542 50.000 0.00 0.00 36.03 3.16
360 361 4.858935 CCATCTTAAATTGGCGGTGTATG 58.141 43.478 0.00 0.00 0.00 2.39
361 362 4.578516 CCATCTTAAATTGGCGGTGTATGA 59.421 41.667 0.00 0.00 0.00 2.15
362 363 5.277974 CCATCTTAAATTGGCGGTGTATGAG 60.278 44.000 0.00 0.00 0.00 2.90
363 364 3.625764 TCTTAAATTGGCGGTGTATGAGC 59.374 43.478 0.00 0.00 0.00 4.26
381 382 2.174334 CGTGAGCTCATTGGGTTGG 58.826 57.895 21.47 0.00 0.00 3.77
382 383 0.606401 CGTGAGCTCATTGGGTTGGT 60.606 55.000 21.47 0.00 0.00 3.67
383 384 0.883833 GTGAGCTCATTGGGTTGGTG 59.116 55.000 21.47 0.00 0.00 4.17
384 385 0.478072 TGAGCTCATTGGGTTGGTGT 59.522 50.000 13.74 0.00 0.00 4.16
385 386 1.702401 TGAGCTCATTGGGTTGGTGTA 59.298 47.619 13.74 0.00 0.00 2.90
386 387 2.107378 TGAGCTCATTGGGTTGGTGTAA 59.893 45.455 13.74 0.00 0.00 2.41
387 388 2.488153 GAGCTCATTGGGTTGGTGTAAC 59.512 50.000 9.40 0.00 38.60 2.50
388 389 1.199097 GCTCATTGGGTTGGTGTAACG 59.801 52.381 0.00 0.00 40.28 3.18
392 393 2.433004 GGGTTGGTGTAACGCCCT 59.567 61.111 0.00 0.00 44.07 5.19
393 394 1.673337 GGGTTGGTGTAACGCCCTC 60.673 63.158 0.00 0.00 44.07 4.30
394 395 2.030958 GGTTGGTGTAACGCCCTCG 61.031 63.158 0.00 0.00 40.28 4.63
395 396 1.005867 GTTGGTGTAACGCCCTCGA 60.006 57.895 0.00 0.00 38.12 4.04
396 397 0.390735 GTTGGTGTAACGCCCTCGAT 60.391 55.000 0.00 0.00 38.12 3.59
397 398 0.390603 TTGGTGTAACGCCCTCGATG 60.391 55.000 0.00 0.00 38.12 3.84
398 399 2.171725 GGTGTAACGCCCTCGATGC 61.172 63.158 0.00 0.00 38.12 3.91
405 406 2.970639 GCCCTCGATGCGGCTATA 59.029 61.111 10.26 0.00 42.21 1.31
406 407 1.517832 GCCCTCGATGCGGCTATAT 59.482 57.895 10.26 0.00 42.21 0.86
407 408 0.528684 GCCCTCGATGCGGCTATATC 60.529 60.000 10.26 0.00 42.21 1.63
408 409 1.107114 CCCTCGATGCGGCTATATCT 58.893 55.000 0.00 0.00 0.00 1.98
409 410 1.478510 CCCTCGATGCGGCTATATCTT 59.521 52.381 0.00 0.00 0.00 2.40
410 411 2.093973 CCCTCGATGCGGCTATATCTTT 60.094 50.000 0.00 0.00 0.00 2.52
411 412 3.182967 CCTCGATGCGGCTATATCTTTC 58.817 50.000 0.00 0.00 0.00 2.62
414 415 3.437741 TCGATGCGGCTATATCTTTCGTA 59.562 43.478 0.00 0.00 0.00 3.43
420 421 3.979495 CGGCTATATCTTTCGTACACACC 59.021 47.826 0.00 0.00 0.00 4.16
425 426 7.368833 GCTATATCTTTCGTACACACCAGTAT 58.631 38.462 0.00 0.00 0.00 2.12
469 470 0.392998 CCATCTGCCTGGTACACACC 60.393 60.000 0.00 0.00 46.00 4.16
500 501 6.487689 ACAAAGAAGCTTATAGCAGTGAAC 57.512 37.500 0.00 0.00 45.56 3.18
558 561 0.037326 CTGCTGGAGCTCGTTTACCA 60.037 55.000 7.83 0.00 42.66 3.25
560 563 2.755929 CTGGAGCTCGTTTACCAGC 58.244 57.895 7.83 0.00 42.30 4.85
562 565 1.080025 GGAGCTCGTTTACCAGCGT 60.080 57.895 7.83 0.00 40.84 5.07
580 583 2.607771 GCGTGTGCAATCAACTTTCCAT 60.608 45.455 0.00 0.00 42.15 3.41
609 612 2.005451 CTCTGGCAGAATTCTCCAACG 58.995 52.381 19.29 13.39 0.00 4.10
649 661 1.529226 CCCGTAACAAATGGCACTCA 58.471 50.000 0.00 0.00 32.21 3.41
653 671 2.811431 CGTAACAAATGGCACTCAAGGA 59.189 45.455 0.00 0.00 0.00 3.36
667 685 0.755079 CAAGGATGAGGAGGATCGCA 59.245 55.000 0.00 0.00 34.37 5.10
703 724 2.100605 AGGACTTCCTCAACGATTGC 57.899 50.000 0.00 0.00 44.77 3.56
735 759 1.870167 GCCTAGCTATTCGTGTGAGGC 60.870 57.143 2.76 2.76 41.09 4.70
748 772 3.309682 CGTGTGAGGCGATAACATCATTT 59.690 43.478 0.00 0.00 0.00 2.32
769 793 1.083489 TTCGTCGCCATGTTGAATCC 58.917 50.000 0.00 0.00 0.00 3.01
787 814 3.813724 GGGTGGAGGAGGGGCATG 61.814 72.222 0.00 0.00 0.00 4.06
788 815 3.813724 GGTGGAGGAGGGGCATGG 61.814 72.222 0.00 0.00 0.00 3.66
794 821 4.489771 GGAGGGGCATGGTGGACG 62.490 72.222 0.00 0.00 0.00 4.79
802 829 1.594194 GCATGGTGGACGCCAAATCA 61.594 55.000 8.86 1.40 42.48 2.57
805 832 2.727123 TGGTGGACGCCAAATCATAT 57.273 45.000 1.39 0.00 34.18 1.78
807 834 4.365514 TGGTGGACGCCAAATCATATAT 57.634 40.909 1.39 0.00 34.18 0.86
833 860 4.165372 GGTTTAATGATACCAGGGGTGAGA 59.835 45.833 0.00 0.00 36.19 3.27
834 861 5.123936 GTTTAATGATACCAGGGGTGAGAC 58.876 45.833 0.00 0.00 36.19 3.36
835 862 1.414158 ATGATACCAGGGGTGAGACG 58.586 55.000 0.00 0.00 36.19 4.18
836 863 0.686441 TGATACCAGGGGTGAGACGG 60.686 60.000 0.00 0.00 36.19 4.79
837 864 0.686769 GATACCAGGGGTGAGACGGT 60.687 60.000 0.00 0.00 36.19 4.83
838 865 0.976073 ATACCAGGGGTGAGACGGTG 60.976 60.000 0.00 0.00 36.19 4.94
839 866 2.084089 TACCAGGGGTGAGACGGTGA 62.084 60.000 0.00 0.00 36.19 4.02
840 867 2.650116 CCAGGGGTGAGACGGTGAG 61.650 68.421 0.00 0.00 0.00 3.51
845 872 1.258445 GGGTGAGACGGTGAGTGGAT 61.258 60.000 0.00 0.00 0.00 3.41
846 873 1.471119 GGTGAGACGGTGAGTGGATA 58.529 55.000 0.00 0.00 0.00 2.59
847 874 2.032620 GGTGAGACGGTGAGTGGATAT 58.967 52.381 0.00 0.00 0.00 1.63
855 882 1.132588 GTGAGTGGATATTCGCGAGC 58.867 55.000 9.59 0.00 0.00 5.03
874 907 0.729116 CAAGCGATGCTTCCAACGAT 59.271 50.000 0.16 0.00 46.77 3.73
877 910 0.726827 GCGATGCTTCCAACGATTGA 59.273 50.000 0.00 0.00 39.29 2.57
916 950 6.309357 AGGCCATTTGATGAGAGCATTATTA 58.691 36.000 5.01 0.00 34.11 0.98
958 1024 4.532834 TCTATGTTTTCACCATAAGGCCC 58.467 43.478 0.00 0.00 39.06 5.80
977 1052 3.810033 GCCCTTTCTCCTGATGATCATCC 60.810 52.174 28.61 13.99 37.02 3.51
1026 1101 5.124457 GTCCAACTACATGATGCATCTGTTT 59.876 40.000 26.32 15.89 0.00 2.83
1067 1142 1.381463 TGCCAGGCAGCAGAAAGAT 59.619 52.632 11.22 0.00 38.00 2.40
1074 1149 3.739300 CAGGCAGCAGAAAGATTTTGTTG 59.261 43.478 0.00 0.00 0.00 3.33
1076 1151 3.493176 GGCAGCAGAAAGATTTTGTTGGT 60.493 43.478 0.00 0.00 0.00 3.67
1089 1164 0.907704 TGTTGGTGAGGGCCTACGAT 60.908 55.000 5.73 0.00 37.13 3.73
1115 1190 0.531532 GAGGACATCATCGGCAGTGG 60.532 60.000 0.00 0.00 0.00 4.00
1125 1206 2.930562 GGCAGTGGGGAGACACCT 60.931 66.667 0.00 0.00 42.28 4.00
1131 1215 1.366435 AGTGGGGAGACACCTAAGGAT 59.634 52.381 0.00 0.00 42.28 3.24
1158 1243 8.079211 ACAGAGAATTTACACAGAGGCTAATA 57.921 34.615 0.00 0.00 0.00 0.98
1176 1261 0.742990 TAGAGAAATGCAACGCGGGG 60.743 55.000 12.47 2.29 0.00 5.73
1204 1307 2.014857 GGCCCGACTCTTTTATTCACC 58.985 52.381 0.00 0.00 0.00 4.02
1206 1309 3.078837 GCCCGACTCTTTTATTCACCAA 58.921 45.455 0.00 0.00 0.00 3.67
1335 1483 1.680522 CCAGAGGATACCTGCACGCT 61.681 60.000 0.00 0.00 31.76 5.07
1368 1516 0.811915 CAGGTGTGGAGTACCTCTCG 59.188 60.000 0.00 0.00 45.19 4.04
1394 1542 3.260884 GTCTGGGTCCTGTTGACATTCTA 59.739 47.826 0.00 0.00 46.38 2.10
1423 1571 3.561725 GGAGACATTTCCGGATAAGCTTG 59.438 47.826 4.15 0.00 0.00 4.01
1441 1589 1.201429 TGAAAGGAGGGAGGGTCTGC 61.201 60.000 0.00 0.00 0.00 4.26
1445 1593 3.791586 GAGGGAGGGTCTGCCAGC 61.792 72.222 8.14 0.00 44.71 4.85
1448 1596 4.792804 GGAGGGTCTGCCAGCTGC 62.793 72.222 8.66 4.57 41.77 5.25
1462 1629 2.394563 GCTGCCAGCGAAGGAAGAC 61.395 63.158 0.00 0.00 36.29 3.01
1467 1634 1.677217 GCCAGCGAAGGAAGACAAGAT 60.677 52.381 0.00 0.00 0.00 2.40
1470 1637 1.277557 AGCGAAGGAAGACAAGATGCT 59.722 47.619 0.00 0.00 0.00 3.79
1471 1638 1.396301 GCGAAGGAAGACAAGATGCTG 59.604 52.381 0.00 0.00 0.00 4.41
1472 1639 1.396301 CGAAGGAAGACAAGATGCTGC 59.604 52.381 0.00 0.00 0.00 5.25
1473 1640 2.709213 GAAGGAAGACAAGATGCTGCT 58.291 47.619 0.00 0.00 0.00 4.24
1477 1644 1.130749 GAAGACAAGATGCTGCTGCTG 59.869 52.381 17.00 8.89 40.48 4.41
1480 1647 0.035725 ACAAGATGCTGCTGCTGCTA 60.036 50.000 27.67 16.66 40.48 3.49
1481 1648 0.377554 CAAGATGCTGCTGCTGCTAC 59.622 55.000 27.67 21.03 40.48 3.58
1482 1649 1.088340 AAGATGCTGCTGCTGCTACG 61.088 55.000 27.67 6.45 40.48 3.51
1487 1654 2.046023 TGCTGCTGCTACGGCATT 60.046 55.556 17.00 0.00 46.80 3.56
1488 1655 1.675310 TGCTGCTGCTACGGCATTT 60.675 52.632 17.00 0.00 46.80 2.32
1489 1656 1.925415 TGCTGCTGCTACGGCATTTG 61.925 55.000 17.00 0.00 46.80 2.32
1495 1662 0.676466 TGCTACGGCATTTGGGTCTG 60.676 55.000 0.00 0.00 44.28 3.51
1496 1663 0.392461 GCTACGGCATTTGGGTCTGA 60.392 55.000 0.00 0.00 38.54 3.27
1498 1665 2.432444 CTACGGCATTTGGGTCTGAAA 58.568 47.619 0.00 0.00 0.00 2.69
1499 1666 1.247567 ACGGCATTTGGGTCTGAAAG 58.752 50.000 0.00 0.00 0.00 2.62
1500 1667 1.247567 CGGCATTTGGGTCTGAAAGT 58.752 50.000 0.00 0.00 33.76 2.66
1501 1668 1.068333 CGGCATTTGGGTCTGAAAGTG 60.068 52.381 0.00 0.00 33.76 3.16
1502 1669 2.238521 GGCATTTGGGTCTGAAAGTGA 58.761 47.619 0.00 0.00 33.76 3.41
1503 1670 2.627699 GGCATTTGGGTCTGAAAGTGAA 59.372 45.455 0.00 0.00 33.76 3.18
1504 1671 3.305608 GGCATTTGGGTCTGAAAGTGAAG 60.306 47.826 0.00 0.00 33.76 3.02
1506 1673 1.981256 TTGGGTCTGAAAGTGAAGGC 58.019 50.000 0.00 0.00 33.76 4.35
1507 1674 0.843309 TGGGTCTGAAAGTGAAGGCA 59.157 50.000 0.00 0.00 33.76 4.75
1508 1675 1.202806 TGGGTCTGAAAGTGAAGGCAG 60.203 52.381 0.00 0.00 33.76 4.85
1509 1676 0.877743 GGTCTGAAAGTGAAGGCAGC 59.122 55.000 0.00 0.00 33.76 5.25
1510 1677 0.514691 GTCTGAAAGTGAAGGCAGCG 59.485 55.000 0.00 0.00 33.76 5.18
1511 1678 1.208614 CTGAAAGTGAAGGCAGCGC 59.791 57.895 0.00 0.00 0.00 5.92
1512 1679 2.174349 GAAAGTGAAGGCAGCGCG 59.826 61.111 0.00 0.00 0.00 6.86
1513 1680 3.935665 GAAAGTGAAGGCAGCGCGC 62.936 63.158 26.66 26.66 41.28 6.86
1516 1683 4.824166 GTGAAGGCAGCGCGCATG 62.824 66.667 35.10 26.98 45.17 4.06
1518 1685 4.527157 GAAGGCAGCGCGCATGTC 62.527 66.667 35.10 27.47 45.17 3.06
1523 1690 3.557479 CAGCGCGCATGTCGTCAT 61.557 61.111 35.10 5.73 41.07 3.06
1524 1691 2.815211 AGCGCGCATGTCGTCATT 60.815 55.556 35.10 4.83 41.07 2.57
1525 1692 2.350091 GCGCGCATGTCGTCATTC 60.350 61.111 29.10 0.00 41.07 2.67
1527 1694 1.012998 CGCGCATGTCGTCATTCAG 60.013 57.895 8.75 0.00 41.07 3.02
1529 1696 1.361668 GCGCATGTCGTCATTCAGGT 61.362 55.000 0.30 0.00 41.07 4.00
1530 1697 1.078709 CGCATGTCGTCATTCAGGTT 58.921 50.000 0.00 0.00 31.15 3.50
1531 1698 1.464608 CGCATGTCGTCATTCAGGTTT 59.535 47.619 0.00 0.00 31.15 3.27
1532 1699 2.725759 CGCATGTCGTCATTCAGGTTTG 60.726 50.000 0.00 0.00 31.15 2.93
1533 1700 2.483877 GCATGTCGTCATTCAGGTTTGA 59.516 45.455 0.00 0.00 31.15 2.69
1534 1701 3.425359 GCATGTCGTCATTCAGGTTTGAG 60.425 47.826 0.00 0.00 34.15 3.02
1535 1702 2.143122 TGTCGTCATTCAGGTTTGAGC 58.857 47.619 0.00 0.00 34.15 4.26
1537 1704 2.413453 GTCGTCATTCAGGTTTGAGCTC 59.587 50.000 6.82 6.82 34.15 4.09
1538 1705 1.391485 CGTCATTCAGGTTTGAGCTCG 59.609 52.381 9.64 0.00 34.15 5.03
1539 1706 2.688507 GTCATTCAGGTTTGAGCTCGA 58.311 47.619 9.64 3.88 34.15 4.04
1540 1707 2.670414 GTCATTCAGGTTTGAGCTCGAG 59.330 50.000 8.45 8.45 34.15 4.04
1541 1708 2.005451 CATTCAGGTTTGAGCTCGAGG 58.995 52.381 15.58 0.00 34.15 4.63
1542 1709 1.338107 TTCAGGTTTGAGCTCGAGGA 58.662 50.000 15.58 1.21 34.15 3.71
1543 1710 1.561643 TCAGGTTTGAGCTCGAGGAT 58.438 50.000 15.58 0.00 0.00 3.24
1544 1711 2.735151 TCAGGTTTGAGCTCGAGGATA 58.265 47.619 15.58 0.00 0.00 2.59
1545 1712 3.300388 TCAGGTTTGAGCTCGAGGATAT 58.700 45.455 15.58 0.00 0.00 1.63
1549 1716 4.054671 GGTTTGAGCTCGAGGATATTCTG 58.945 47.826 15.58 0.00 0.00 3.02
1550 1717 3.377346 TTGAGCTCGAGGATATTCTGC 57.623 47.619 15.58 0.00 0.00 4.26
1551 1718 2.591923 TGAGCTCGAGGATATTCTGCT 58.408 47.619 15.58 1.61 0.00 4.24
1552 1719 2.961741 TGAGCTCGAGGATATTCTGCTT 59.038 45.455 15.58 0.00 0.00 3.91
1553 1720 4.145052 TGAGCTCGAGGATATTCTGCTTA 58.855 43.478 15.58 0.00 0.00 3.09
1554 1721 4.217334 TGAGCTCGAGGATATTCTGCTTAG 59.783 45.833 15.58 0.00 0.00 2.18
1555 1722 4.148838 AGCTCGAGGATATTCTGCTTAGT 58.851 43.478 15.58 0.00 0.00 2.24
1556 1723 4.217550 AGCTCGAGGATATTCTGCTTAGTC 59.782 45.833 15.58 0.00 0.00 2.59
1557 1724 4.217550 GCTCGAGGATATTCTGCTTAGTCT 59.782 45.833 15.58 0.00 0.00 3.24
1558 1725 5.278758 GCTCGAGGATATTCTGCTTAGTCTT 60.279 44.000 15.58 0.00 0.00 3.01
1559 1726 6.320494 TCGAGGATATTCTGCTTAGTCTTC 57.680 41.667 0.00 0.00 0.00 2.87
1560 1727 5.241949 TCGAGGATATTCTGCTTAGTCTTCC 59.758 44.000 0.00 0.00 0.00 3.46
1561 1728 5.242838 CGAGGATATTCTGCTTAGTCTTCCT 59.757 44.000 0.00 0.00 33.88 3.36
1562 1729 6.239176 CGAGGATATTCTGCTTAGTCTTCCTT 60.239 42.308 0.00 0.00 31.42 3.36
1563 1730 6.825610 AGGATATTCTGCTTAGTCTTCCTTG 58.174 40.000 0.00 0.00 0.00 3.61
1564 1731 6.613271 AGGATATTCTGCTTAGTCTTCCTTGA 59.387 38.462 0.00 0.00 0.00 3.02
1567 1734 6.998968 ATTCTGCTTAGTCTTCCTTGATTG 57.001 37.500 0.00 0.00 0.00 2.67
1571 1738 7.851228 TCTGCTTAGTCTTCCTTGATTGATTA 58.149 34.615 0.00 0.00 0.00 1.75
1586 1753 8.579850 TTGATTGATTATTTACCTTGTCTGCT 57.420 30.769 0.00 0.00 0.00 4.24
1588 1755 9.679661 TGATTGATTATTTACCTTGTCTGCTAA 57.320 29.630 0.00 0.00 0.00 3.09
1590 1757 9.905713 ATTGATTATTTACCTTGTCTGCTAAGA 57.094 29.630 0.00 0.00 0.00 2.10
1591 1758 8.948631 TGATTATTTACCTTGTCTGCTAAGAG 57.051 34.615 0.00 0.00 31.37 2.85
1592 1759 7.987458 TGATTATTTACCTTGTCTGCTAAGAGG 59.013 37.037 0.00 0.00 31.37 3.69
1593 1760 7.490657 TTATTTACCTTGTCTGCTAAGAGGA 57.509 36.000 0.00 0.00 31.37 3.71
1594 1761 4.803098 TTACCTTGTCTGCTAAGAGGAC 57.197 45.455 0.00 0.00 31.37 3.85
1606 1773 3.307059 GCTAAGAGGACCATGTCTGTTGT 60.307 47.826 0.00 0.00 32.47 3.32
1607 1774 4.081642 GCTAAGAGGACCATGTCTGTTGTA 60.082 45.833 0.00 0.00 32.47 2.41
1608 1775 3.963428 AGAGGACCATGTCTGTTGTAC 57.037 47.619 0.00 0.00 32.47 2.90
1609 1776 3.511477 AGAGGACCATGTCTGTTGTACT 58.489 45.455 0.00 0.00 32.47 2.73
1610 1777 3.511934 AGAGGACCATGTCTGTTGTACTC 59.488 47.826 0.00 2.47 38.68 2.59
1611 1778 3.511477 AGGACCATGTCTGTTGTACTCT 58.489 45.455 0.00 0.00 32.47 3.24
1612 1779 3.511934 AGGACCATGTCTGTTGTACTCTC 59.488 47.826 0.00 0.00 32.47 3.20
1613 1780 3.502920 GACCATGTCTGTTGTACTCTCG 58.497 50.000 0.00 0.00 0.00 4.04
1614 1781 2.231478 ACCATGTCTGTTGTACTCTCGG 59.769 50.000 0.00 0.00 0.00 4.63
1615 1782 2.231478 CCATGTCTGTTGTACTCTCGGT 59.769 50.000 0.00 0.00 0.00 4.69
1616 1783 3.245797 CATGTCTGTTGTACTCTCGGTG 58.754 50.000 0.00 0.00 0.00 4.94
1617 1784 1.000607 TGTCTGTTGTACTCTCGGTGC 60.001 52.381 0.00 0.00 0.00 5.01
1618 1785 0.601558 TCTGTTGTACTCTCGGTGCC 59.398 55.000 0.00 0.00 0.00 5.01
1621 1788 1.346395 TGTTGTACTCTCGGTGCCATT 59.654 47.619 0.00 0.00 0.00 3.16
1624 1791 4.403113 TGTTGTACTCTCGGTGCCATTATA 59.597 41.667 0.00 0.00 0.00 0.98
1629 1796 5.036117 ACTCTCGGTGCCATTATATGTTT 57.964 39.130 0.00 0.00 0.00 2.83
1647 1814 4.016444 TGTTTGCACTCCTTCTGTCTTTT 58.984 39.130 0.00 0.00 0.00 2.27
1648 1815 4.096382 TGTTTGCACTCCTTCTGTCTTTTC 59.904 41.667 0.00 0.00 0.00 2.29
1649 1816 3.845781 TGCACTCCTTCTGTCTTTTCT 57.154 42.857 0.00 0.00 0.00 2.52
1650 1817 4.156455 TGCACTCCTTCTGTCTTTTCTT 57.844 40.909 0.00 0.00 0.00 2.52
1651 1818 4.526970 TGCACTCCTTCTGTCTTTTCTTT 58.473 39.130 0.00 0.00 0.00 2.52
1659 1826 5.819901 CCTTCTGTCTTTTCTTTCTCACTGT 59.180 40.000 0.00 0.00 0.00 3.55
1664 1831 6.049149 TGTCTTTTCTTTCTCACTGTTCGAT 58.951 36.000 0.00 0.00 0.00 3.59
1666 1833 6.018669 GTCTTTTCTTTCTCACTGTTCGATGT 60.019 38.462 0.00 0.00 0.00 3.06
1671 1838 6.150318 TCTTTCTCACTGTTCGATGTAAGAC 58.850 40.000 0.00 0.00 0.00 3.01
1677 1856 6.090783 TCACTGTTCGATGTAAGACATGTAC 58.909 40.000 0.00 0.00 39.27 2.90
1679 1858 5.050644 TGTTCGATGTAAGACATGTACGT 57.949 39.130 0.00 0.00 39.27 3.57
1683 1862 2.925578 TGTAAGACATGTACGTCCCG 57.074 50.000 0.00 0.00 36.52 5.14
1700 1879 1.145162 CCGTTTGTTGTGCCAACTGC 61.145 55.000 15.91 7.73 41.77 4.40
1701 1880 1.145162 CGTTTGTTGTGCCAACTGCC 61.145 55.000 15.91 5.86 40.16 4.85
1702 1881 0.108424 GTTTGTTGTGCCAACTGCCA 60.108 50.000 15.91 0.00 40.16 4.92
1704 1883 0.108424 TTGTTGTGCCAACTGCCAAC 60.108 50.000 15.91 5.67 44.53 3.77
1706 1885 2.430610 TTGTGCCAACTGCCAACCC 61.431 57.895 0.00 0.00 40.16 4.11
1714 1893 1.545582 CAACTGCCAACCCATGTAAGG 59.454 52.381 0.00 0.00 0.00 2.69
1719 1898 1.923356 CCAACCCATGTAAGGCAAGT 58.077 50.000 0.00 0.00 0.00 3.16
1725 1904 3.763897 ACCCATGTAAGGCAAGTGAAATC 59.236 43.478 0.00 0.00 0.00 2.17
1726 1905 4.019174 CCCATGTAAGGCAAGTGAAATCT 58.981 43.478 0.00 0.00 0.00 2.40
1732 1911 6.711277 TGTAAGGCAAGTGAAATCTATGTCT 58.289 36.000 0.00 0.00 0.00 3.41
1735 1914 4.872691 AGGCAAGTGAAATCTATGTCTTCG 59.127 41.667 0.00 0.00 0.00 3.79
1740 1919 6.633668 AGTGAAATCTATGTCTTCGTTTCG 57.366 37.500 0.00 0.00 0.00 3.46
1747 1926 2.806608 TGTCTTCGTTTCGTTAGCCT 57.193 45.000 0.00 0.00 0.00 4.58
1748 1927 2.400399 TGTCTTCGTTTCGTTAGCCTG 58.600 47.619 0.00 0.00 0.00 4.85
1749 1928 2.223876 TGTCTTCGTTTCGTTAGCCTGT 60.224 45.455 0.00 0.00 0.00 4.00
1750 1929 2.407696 GTCTTCGTTTCGTTAGCCTGTC 59.592 50.000 0.00 0.00 0.00 3.51
1751 1930 2.034939 TCTTCGTTTCGTTAGCCTGTCA 59.965 45.455 0.00 0.00 0.00 3.58
1752 1931 2.736144 TCGTTTCGTTAGCCTGTCAT 57.264 45.000 0.00 0.00 0.00 3.06
1753 1932 3.034721 TCGTTTCGTTAGCCTGTCATT 57.965 42.857 0.00 0.00 0.00 2.57
1754 1933 2.991190 TCGTTTCGTTAGCCTGTCATTC 59.009 45.455 0.00 0.00 0.00 2.67
1755 1934 2.734606 CGTTTCGTTAGCCTGTCATTCA 59.265 45.455 0.00 0.00 0.00 2.57
1760 1939 3.195610 TCGTTAGCCTGTCATTCATGTCT 59.804 43.478 0.00 0.00 0.00 3.41
1761 1940 3.308053 CGTTAGCCTGTCATTCATGTCTG 59.692 47.826 0.00 0.00 0.00 3.51
1779 1958 6.620877 TGTCTGATGTATCCAGGTTTTACT 57.379 37.500 0.00 0.00 32.73 2.24
1786 1965 2.163818 TCCAGGTTTTACTGTCTGCG 57.836 50.000 0.00 0.00 36.75 5.18
1806 2613 4.767075 GCGCTCAGCTAATCATAGTTTTC 58.233 43.478 0.00 0.00 44.04 2.29
1809 2616 6.457528 GCGCTCAGCTAATCATAGTTTTCTTT 60.458 38.462 0.00 0.00 44.04 2.52
1812 2619 8.672815 GCTCAGCTAATCATAGTTTTCTTTCTT 58.327 33.333 0.00 0.00 0.00 2.52
1926 4880 2.151202 CGACAGGCTAAAGCAAGGAAA 58.849 47.619 4.07 0.00 44.36 3.13
1952 5314 0.878416 GTGTCACTCTCTCGTGAGCT 59.122 55.000 9.63 0.00 43.94 4.09
2046 5408 5.296035 GCGATTAACAATAAACTGCCTACCT 59.704 40.000 0.00 0.00 0.00 3.08
2059 5421 2.104170 GCCTACCTCTGAACAGTAGCT 58.896 52.381 0.00 0.00 33.61 3.32
2072 5460 4.357918 ACAGTAGCTTGTGATTCTTGGT 57.642 40.909 0.00 0.00 0.00 3.67
2105 5493 1.680735 TCGACTGCAAAATGGCAAAGT 59.319 42.857 0.00 0.00 44.40 2.66
2109 5497 1.874872 CTGCAAAATGGCAAAGTTGGG 59.125 47.619 0.00 0.00 44.40 4.12
2113 5501 0.033366 AAATGGCAAAGTTGGGCGTC 59.967 50.000 0.00 0.00 0.00 5.19
2116 5504 2.332654 GGCAAAGTTGGGCGTCGAT 61.333 57.895 0.00 0.00 0.00 3.59
2117 5505 1.154225 GCAAAGTTGGGCGTCGATG 60.154 57.895 0.00 0.00 0.00 3.84
2118 5506 1.154225 CAAAGTTGGGCGTCGATGC 60.154 57.895 21.53 21.53 0.00 3.91
2263 5803 1.126113 GCGTGTGTGAGATTGTAACCG 59.874 52.381 0.00 0.00 0.00 4.44
2283 5823 4.322080 CGATAGGCAGGTTGTTAGATGA 57.678 45.455 0.00 0.00 0.00 2.92
2332 5872 0.690762 GACTAGGGGTCAAGCCAACA 59.309 55.000 0.01 0.00 43.94 3.33
2366 5906 7.628580 GCCGATGATGTACTTGTGCTCTATATA 60.629 40.741 0.00 0.00 0.00 0.86
2375 5915 7.982371 ACTTGTGCTCTATATAAACACGTAC 57.018 36.000 0.00 0.00 33.96 3.67
2432 5972 4.156455 TCTTTCATGGTAATCAGAGCCC 57.844 45.455 0.00 0.00 0.00 5.19
2437 5977 1.069935 GGTAATCAGAGCCCGCCTC 59.930 63.158 0.00 0.00 41.07 4.70
2438 5978 1.300233 GTAATCAGAGCCCGCCTCG 60.300 63.158 0.00 0.00 45.54 4.63
2479 6019 0.473694 TCAAGCTCCACCTCCTTCCA 60.474 55.000 0.00 0.00 0.00 3.53
2483 6023 1.893786 CTCCACCTCCTTCCACTCG 59.106 63.158 0.00 0.00 0.00 4.18
2487 6027 0.038159 CACCTCCTTCCACTCGTCAC 60.038 60.000 0.00 0.00 0.00 3.67
2498 6038 0.944386 ACTCGTCACCATTTGCACAC 59.056 50.000 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.145551 CTGCAGAATGGGCCAGGC 61.146 66.667 13.78 13.53 35.86 4.85
16 17 1.751927 GACTGCAGAATGGGCCAGG 60.752 63.158 23.35 2.39 35.86 4.45
17 18 0.747283 GAGACTGCAGAATGGGCCAG 60.747 60.000 23.35 0.00 35.86 4.85
18 19 1.300963 GAGACTGCAGAATGGGCCA 59.699 57.895 23.35 9.61 35.86 5.36
19 20 1.452833 GGAGACTGCAGAATGGGCC 60.453 63.158 23.35 8.74 35.86 5.80
20 21 1.817099 CGGAGACTGCAGAATGGGC 60.817 63.158 23.35 0.00 35.86 5.36
21 22 1.817099 GCGGAGACTGCAGAATGGG 60.817 63.158 23.35 7.58 35.86 4.00
22 23 2.169789 CGCGGAGACTGCAGAATGG 61.170 63.158 23.35 6.45 35.86 3.16
23 24 2.169789 CCGCGGAGACTGCAGAATG 61.170 63.158 24.07 6.28 40.87 2.67
24 25 2.185350 CCGCGGAGACTGCAGAAT 59.815 61.111 24.07 8.07 0.00 2.40
25 26 4.069232 CCCGCGGAGACTGCAGAA 62.069 66.667 30.73 0.00 0.00 3.02
30 31 3.708220 GAAGAGCCCGCGGAGACTG 62.708 68.421 30.73 10.90 0.00 3.51
31 32 3.453679 GAAGAGCCCGCGGAGACT 61.454 66.667 30.73 21.12 0.00 3.24
32 33 4.856607 CGAAGAGCCCGCGGAGAC 62.857 72.222 30.73 16.13 0.00 3.36
41 42 3.607370 AAGGAACCCGCGAAGAGCC 62.607 63.158 8.23 1.79 44.76 4.70
42 43 2.047179 AAGGAACCCGCGAAGAGC 60.047 61.111 8.23 0.00 43.95 4.09
43 44 1.741770 CCAAGGAACCCGCGAAGAG 60.742 63.158 8.23 0.00 0.00 2.85
44 45 2.345991 CCAAGGAACCCGCGAAGA 59.654 61.111 8.23 0.00 0.00 2.87
45 46 2.032071 ACCAAGGAACCCGCGAAG 59.968 61.111 8.23 0.00 0.00 3.79
46 47 2.031465 GACCAAGGAACCCGCGAA 59.969 61.111 8.23 0.00 0.00 4.70
47 48 2.513259 AAGACCAAGGAACCCGCGA 61.513 57.895 8.23 0.00 0.00 5.87
48 49 2.032071 AAGACCAAGGAACCCGCG 59.968 61.111 0.00 0.00 0.00 6.46
49 50 2.626780 GCAAGACCAAGGAACCCGC 61.627 63.158 0.00 0.00 0.00 6.13
50 51 1.971695 GGCAAGACCAAGGAACCCG 60.972 63.158 0.00 0.00 38.86 5.28
51 52 1.971695 CGGCAAGACCAAGGAACCC 60.972 63.158 0.00 0.00 39.03 4.11
52 53 1.971695 CCGGCAAGACCAAGGAACC 60.972 63.158 0.00 0.00 39.03 3.62
53 54 1.971695 CCCGGCAAGACCAAGGAAC 60.972 63.158 0.00 0.00 39.03 3.62
54 55 1.128809 TACCCGGCAAGACCAAGGAA 61.129 55.000 0.00 0.00 39.03 3.36
55 56 1.536907 TACCCGGCAAGACCAAGGA 60.537 57.895 0.00 0.00 39.03 3.36
56 57 1.376812 GTACCCGGCAAGACCAAGG 60.377 63.158 0.00 0.00 39.03 3.61
57 58 0.899720 TAGTACCCGGCAAGACCAAG 59.100 55.000 0.00 0.00 39.03 3.61
58 59 1.483415 GATAGTACCCGGCAAGACCAA 59.517 52.381 0.00 0.00 39.03 3.67
59 60 1.117150 GATAGTACCCGGCAAGACCA 58.883 55.000 0.00 0.00 39.03 4.02
60 61 0.031721 CGATAGTACCCGGCAAGACC 59.968 60.000 0.00 0.00 0.00 3.85
61 62 0.031721 CCGATAGTACCCGGCAAGAC 59.968 60.000 0.00 0.00 39.22 3.01
62 63 0.106569 TCCGATAGTACCCGGCAAGA 60.107 55.000 12.45 0.00 44.96 3.02
63 64 0.748450 TTCCGATAGTACCCGGCAAG 59.252 55.000 12.45 0.00 44.96 4.01
64 65 0.748450 CTTCCGATAGTACCCGGCAA 59.252 55.000 12.45 8.12 44.96 4.52
65 66 0.396139 ACTTCCGATAGTACCCGGCA 60.396 55.000 12.45 3.33 44.96 5.69
66 67 0.749049 AACTTCCGATAGTACCCGGC 59.251 55.000 12.45 0.00 44.96 6.13
67 68 2.026641 TGAACTTCCGATAGTACCCGG 58.973 52.381 11.39 11.39 46.57 5.73
68 69 3.305199 GGATGAACTTCCGATAGTACCCG 60.305 52.174 0.00 0.00 0.00 5.28
69 70 4.254402 GGATGAACTTCCGATAGTACCC 57.746 50.000 0.00 0.00 0.00 3.69
79 80 2.084546 CAAACTCCCGGATGAACTTCC 58.915 52.381 0.73 0.00 0.00 3.46
80 81 2.084546 CCAAACTCCCGGATGAACTTC 58.915 52.381 0.73 0.00 0.00 3.01
81 82 1.886655 GCCAAACTCCCGGATGAACTT 60.887 52.381 0.73 0.00 0.00 2.66
82 83 0.322546 GCCAAACTCCCGGATGAACT 60.323 55.000 0.73 0.00 0.00 3.01
83 84 1.313091 GGCCAAACTCCCGGATGAAC 61.313 60.000 0.73 0.00 0.00 3.18
84 85 1.001393 GGCCAAACTCCCGGATGAA 60.001 57.895 0.73 0.00 0.00 2.57
85 86 1.497309 AAGGCCAAACTCCCGGATGA 61.497 55.000 5.01 0.00 0.00 2.92
86 87 0.254747 TAAGGCCAAACTCCCGGATG 59.745 55.000 5.01 0.00 0.00 3.51
87 88 1.143073 GATAAGGCCAAACTCCCGGAT 59.857 52.381 5.01 0.00 0.00 4.18
88 89 0.544697 GATAAGGCCAAACTCCCGGA 59.455 55.000 5.01 0.00 0.00 5.14
89 90 0.814010 CGATAAGGCCAAACTCCCGG 60.814 60.000 5.01 0.00 0.00 5.73
90 91 1.436983 GCGATAAGGCCAAACTCCCG 61.437 60.000 5.01 0.00 0.00 5.14
91 92 1.436983 CGCGATAAGGCCAAACTCCC 61.437 60.000 5.01 0.00 0.00 4.30
92 93 1.436983 CCGCGATAAGGCCAAACTCC 61.437 60.000 8.23 0.00 0.00 3.85
93 94 2.014594 CCGCGATAAGGCCAAACTC 58.985 57.895 8.23 0.00 0.00 3.01
94 95 4.218722 CCGCGATAAGGCCAAACT 57.781 55.556 8.23 0.00 0.00 2.66
117 118 3.384014 GACGGAGGAGACGCGTGAG 62.384 68.421 20.70 1.79 34.00 3.51
118 119 3.429141 GACGGAGGAGACGCGTGA 61.429 66.667 20.70 0.00 34.00 4.35
119 120 4.813526 CGACGGAGGAGACGCGTG 62.814 72.222 20.70 1.77 34.00 5.34
123 124 4.517703 GTCGCGACGGAGGAGACG 62.518 72.222 25.19 0.00 37.36 4.18
133 134 2.126424 AAGAGAAGGCGTCGCGAC 60.126 61.111 28.96 28.96 33.59 5.19
134 135 2.126463 CAAGAGAAGGCGTCGCGA 60.126 61.111 3.71 3.71 0.00 5.87
135 136 3.181967 CCAAGAGAAGGCGTCGCG 61.182 66.667 11.75 0.00 0.00 5.87
136 137 2.579684 ATCCCAAGAGAAGGCGTCGC 62.580 60.000 9.22 9.22 0.00 5.19
137 138 0.807667 CATCCCAAGAGAAGGCGTCG 60.808 60.000 0.00 0.00 0.00 5.12
138 139 1.092345 GCATCCCAAGAGAAGGCGTC 61.092 60.000 0.00 0.00 0.00 5.19
139 140 1.078143 GCATCCCAAGAGAAGGCGT 60.078 57.895 0.00 0.00 0.00 5.68
140 141 2.176273 CGCATCCCAAGAGAAGGCG 61.176 63.158 0.00 0.00 37.31 5.52
141 142 1.821332 CCGCATCCCAAGAGAAGGC 60.821 63.158 0.00 0.00 0.00 4.35
142 143 0.179062 CTCCGCATCCCAAGAGAAGG 60.179 60.000 0.00 0.00 0.00 3.46
143 144 0.179062 CCTCCGCATCCCAAGAGAAG 60.179 60.000 0.00 0.00 0.00 2.85
144 145 1.907739 CCTCCGCATCCCAAGAGAA 59.092 57.895 0.00 0.00 0.00 2.87
145 146 2.735772 GCCTCCGCATCCCAAGAGA 61.736 63.158 0.00 0.00 34.03 3.10
146 147 2.203126 GCCTCCGCATCCCAAGAG 60.203 66.667 0.00 0.00 34.03 2.85
147 148 3.797353 GGCCTCCGCATCCCAAGA 61.797 66.667 0.00 0.00 36.38 3.02
148 149 4.113815 TGGCCTCCGCATCCCAAG 62.114 66.667 3.32 0.00 36.38 3.61
149 150 4.424711 GTGGCCTCCGCATCCCAA 62.425 66.667 3.32 0.00 36.38 4.12
151 152 4.115199 AAGTGGCCTCCGCATCCC 62.115 66.667 3.32 0.00 36.32 3.85
152 153 2.514824 GAAGTGGCCTCCGCATCC 60.515 66.667 3.32 0.00 36.32 3.51
153 154 1.817099 CTGAAGTGGCCTCCGCATC 60.817 63.158 3.32 0.00 36.32 3.91
154 155 2.270205 CTGAAGTGGCCTCCGCAT 59.730 61.111 3.32 0.00 36.32 4.73
155 156 4.704833 GCTGAAGTGGCCTCCGCA 62.705 66.667 3.32 0.25 36.32 5.69
156 157 3.984193 ATGCTGAAGTGGCCTCCGC 62.984 63.158 3.32 1.65 0.00 5.54
157 158 1.372087 GAATGCTGAAGTGGCCTCCG 61.372 60.000 3.32 0.00 0.00 4.63
158 159 1.372087 CGAATGCTGAAGTGGCCTCC 61.372 60.000 3.32 0.00 0.00 4.30
159 160 0.391661 TCGAATGCTGAAGTGGCCTC 60.392 55.000 3.32 0.00 0.00 4.70
160 161 0.392193 CTCGAATGCTGAAGTGGCCT 60.392 55.000 3.32 0.00 0.00 5.19
161 162 1.372087 CCTCGAATGCTGAAGTGGCC 61.372 60.000 0.00 0.00 0.00 5.36
162 163 1.986575 GCCTCGAATGCTGAAGTGGC 61.987 60.000 0.00 0.00 36.35 5.01
163 164 1.372087 GGCCTCGAATGCTGAAGTGG 61.372 60.000 0.00 0.00 0.00 4.00
164 165 1.372087 GGGCCTCGAATGCTGAAGTG 61.372 60.000 0.84 0.00 0.00 3.16
165 166 1.078143 GGGCCTCGAATGCTGAAGT 60.078 57.895 0.84 0.00 0.00 3.01
166 167 0.813210 GAGGGCCTCGAATGCTGAAG 60.813 60.000 19.53 0.00 0.00 3.02
167 168 1.221840 GAGGGCCTCGAATGCTGAA 59.778 57.895 19.53 0.00 0.00 3.02
168 169 1.552799 TTGAGGGCCTCGAATGCTGA 61.553 55.000 27.58 5.41 32.35 4.26
169 170 1.078214 TTGAGGGCCTCGAATGCTG 60.078 57.895 27.58 0.00 32.35 4.41
170 171 1.078143 GTTGAGGGCCTCGAATGCT 60.078 57.895 25.16 0.00 32.35 3.79
171 172 2.464459 CGTTGAGGGCCTCGAATGC 61.464 63.158 25.16 12.05 32.35 3.56
172 173 1.815421 CCGTTGAGGGCCTCGAATG 60.815 63.158 25.16 22.80 35.97 2.67
173 174 2.584608 CCGTTGAGGGCCTCGAAT 59.415 61.111 25.16 0.00 35.97 3.34
182 183 4.410400 GTGAGGGCCCCGTTGAGG 62.410 72.222 21.43 0.00 40.63 3.86
183 184 4.760047 CGTGAGGGCCCCGTTGAG 62.760 72.222 21.43 0.97 0.00 3.02
203 204 1.144057 CATCTGCAGTACGGGTCCC 59.856 63.158 14.67 0.00 0.00 4.46
204 205 1.521681 GCATCTGCAGTACGGGTCC 60.522 63.158 14.67 0.00 41.59 4.46
205 206 1.521681 GGCATCTGCAGTACGGGTC 60.522 63.158 14.67 0.00 44.36 4.46
206 207 2.584608 GGCATCTGCAGTACGGGT 59.415 61.111 14.67 0.00 44.36 5.28
207 208 2.586079 CGGCATCTGCAGTACGGG 60.586 66.667 14.67 1.23 44.36 5.28
208 209 2.586079 CCGGCATCTGCAGTACGG 60.586 66.667 14.67 18.10 44.36 4.02
209 210 1.878522 GTCCGGCATCTGCAGTACG 60.879 63.158 14.67 13.37 44.36 3.67
210 211 0.108138 AAGTCCGGCATCTGCAGTAC 60.108 55.000 14.67 4.21 44.36 2.73
211 212 0.175760 GAAGTCCGGCATCTGCAGTA 59.824 55.000 14.67 0.48 44.36 2.74
212 213 1.078848 GAAGTCCGGCATCTGCAGT 60.079 57.895 14.67 0.00 44.36 4.40
213 214 2.169789 CGAAGTCCGGCATCTGCAG 61.170 63.158 7.63 7.63 44.36 4.41
214 215 2.125552 CGAAGTCCGGCATCTGCA 60.126 61.111 0.00 0.00 44.36 4.41
215 216 2.167861 GTCGAAGTCCGGCATCTGC 61.168 63.158 0.00 0.00 43.50 4.26
216 217 1.519455 GGTCGAAGTCCGGCATCTG 60.519 63.158 0.00 0.00 46.37 2.90
217 218 1.682684 AGGTCGAAGTCCGGCATCT 60.683 57.895 0.00 0.00 46.37 2.90
218 219 1.227002 GAGGTCGAAGTCCGGCATC 60.227 63.158 0.00 0.00 46.27 3.91
219 220 2.722201 GGAGGTCGAAGTCCGGCAT 61.722 63.158 0.00 0.00 46.37 4.40
220 221 3.379445 GGAGGTCGAAGTCCGGCA 61.379 66.667 0.00 0.00 46.37 5.69
221 222 4.144703 GGGAGGTCGAAGTCCGGC 62.145 72.222 0.00 0.00 41.61 6.13
222 223 3.459063 GGGGAGGTCGAAGTCCGG 61.459 72.222 0.00 0.00 41.61 5.14
223 224 1.946475 GAAGGGGAGGTCGAAGTCCG 61.946 65.000 7.96 0.00 41.61 4.79
224 225 0.903454 TGAAGGGGAGGTCGAAGTCC 60.903 60.000 5.85 5.85 35.48 3.85
225 226 0.246910 GTGAAGGGGAGGTCGAAGTC 59.753 60.000 0.00 0.00 0.00 3.01
226 227 1.192803 GGTGAAGGGGAGGTCGAAGT 61.193 60.000 0.00 0.00 0.00 3.01
227 228 1.597461 GGTGAAGGGGAGGTCGAAG 59.403 63.158 0.00 0.00 0.00 3.79
228 229 2.280552 CGGTGAAGGGGAGGTCGAA 61.281 63.158 0.00 0.00 0.00 3.71
229 230 2.678934 CGGTGAAGGGGAGGTCGA 60.679 66.667 0.00 0.00 0.00 4.20
230 231 2.995574 ACGGTGAAGGGGAGGTCG 60.996 66.667 0.00 0.00 0.00 4.79
231 232 2.979649 GACGGTGAAGGGGAGGTC 59.020 66.667 0.00 0.00 0.00 3.85
232 233 2.995574 CGACGGTGAAGGGGAGGT 60.996 66.667 0.00 0.00 0.00 3.85
233 234 2.678934 TCGACGGTGAAGGGGAGG 60.679 66.667 0.00 0.00 0.00 4.30
234 235 1.977544 AGTCGACGGTGAAGGGGAG 60.978 63.158 10.46 0.00 0.00 4.30
235 236 2.116772 AGTCGACGGTGAAGGGGA 59.883 61.111 10.46 0.00 0.00 4.81
236 237 2.261671 CAGTCGACGGTGAAGGGG 59.738 66.667 10.46 0.00 0.00 4.79
237 238 2.432628 GCAGTCGACGGTGAAGGG 60.433 66.667 17.03 0.00 0.00 3.95
238 239 2.805353 CGCAGTCGACGGTGAAGG 60.805 66.667 22.41 3.26 38.10 3.46
239 240 2.254350 TCGCAGTCGACGGTGAAG 59.746 61.111 26.07 11.63 40.21 3.02
247 248 4.753877 CGGAAGCGTCGCAGTCGA 62.754 66.667 21.09 0.00 42.49 4.20
249 250 4.719369 ACCGGAAGCGTCGCAGTC 62.719 66.667 21.09 15.56 0.00 3.51
264 265 3.601685 CACACCAAACCCCGCACC 61.602 66.667 0.00 0.00 0.00 5.01
265 266 3.601685 CCACACCAAACCCCGCAC 61.602 66.667 0.00 0.00 0.00 5.34
266 267 4.130554 ACCACACCAAACCCCGCA 62.131 61.111 0.00 0.00 0.00 5.69
267 268 3.292159 GACCACACCAAACCCCGC 61.292 66.667 0.00 0.00 0.00 6.13
268 269 2.596338 GGACCACACCAAACCCCG 60.596 66.667 0.00 0.00 0.00 5.73
269 270 1.530655 CAGGACCACACCAAACCCC 60.531 63.158 0.00 0.00 0.00 4.95
270 271 2.200337 GCAGGACCACACCAAACCC 61.200 63.158 0.00 0.00 0.00 4.11
271 272 1.454847 TGCAGGACCACACCAAACC 60.455 57.895 0.00 0.00 0.00 3.27
272 273 1.733526 GTGCAGGACCACACCAAAC 59.266 57.895 6.43 0.00 35.80 2.93
273 274 4.251246 GTGCAGGACCACACCAAA 57.749 55.556 6.43 0.00 35.80 3.28
285 286 4.100084 TCCATCGCCCTGGTGCAG 62.100 66.667 7.72 0.00 37.57 4.41
286 287 4.408821 GTCCATCGCCCTGGTGCA 62.409 66.667 7.72 0.00 37.57 4.57
288 289 4.489771 GGGTCCATCGCCCTGGTG 62.490 72.222 0.00 0.00 42.81 4.17
296 297 3.447025 GAAGGCGAGGGGTCCATCG 62.447 68.421 18.18 18.18 41.79 3.84
297 298 1.627297 AAGAAGGCGAGGGGTCCATC 61.627 60.000 0.00 0.00 0.00 3.51
298 299 1.616628 AAGAAGGCGAGGGGTCCAT 60.617 57.895 0.00 0.00 0.00 3.41
299 300 2.203938 AAGAAGGCGAGGGGTCCA 60.204 61.111 0.00 0.00 0.00 4.02
300 301 2.245438 CTGAAGAAGGCGAGGGGTCC 62.245 65.000 0.00 0.00 0.00 4.46
301 302 1.219393 CTGAAGAAGGCGAGGGGTC 59.781 63.158 0.00 0.00 0.00 4.46
302 303 2.960688 GCTGAAGAAGGCGAGGGGT 61.961 63.158 0.00 0.00 0.00 4.95
303 304 2.124942 GCTGAAGAAGGCGAGGGG 60.125 66.667 0.00 0.00 0.00 4.79
304 305 2.124942 GGCTGAAGAAGGCGAGGG 60.125 66.667 0.00 0.00 42.32 4.30
310 311 2.771328 AAAGGGGCGGCTGAAGAAGG 62.771 60.000 9.56 0.00 0.00 3.46
311 312 1.303643 AAAGGGGCGGCTGAAGAAG 60.304 57.895 9.56 0.00 0.00 2.85
312 313 1.603455 CAAAGGGGCGGCTGAAGAA 60.603 57.895 9.56 0.00 0.00 2.52
313 314 2.034066 CAAAGGGGCGGCTGAAGA 59.966 61.111 9.56 0.00 0.00 2.87
314 315 3.752339 GCAAAGGGGCGGCTGAAG 61.752 66.667 9.56 0.00 0.00 3.02
315 316 4.284550 AGCAAAGGGGCGGCTGAA 62.285 61.111 9.56 0.00 39.27 3.02
331 332 3.344904 CCAATTTAAGATGGCGAGCAG 57.655 47.619 0.00 0.00 0.00 4.24
338 339 4.578516 TCATACACCGCCAATTTAAGATGG 59.421 41.667 4.63 4.63 39.80 3.51
339 340 5.749596 TCATACACCGCCAATTTAAGATG 57.250 39.130 0.00 0.00 0.00 2.90
340 341 4.275936 GCTCATACACCGCCAATTTAAGAT 59.724 41.667 0.00 0.00 0.00 2.40
341 342 3.625764 GCTCATACACCGCCAATTTAAGA 59.374 43.478 0.00 0.00 0.00 2.10
342 343 3.546020 CGCTCATACACCGCCAATTTAAG 60.546 47.826 0.00 0.00 0.00 1.85
343 344 2.353269 CGCTCATACACCGCCAATTTAA 59.647 45.455 0.00 0.00 0.00 1.52
344 345 1.937223 CGCTCATACACCGCCAATTTA 59.063 47.619 0.00 0.00 0.00 1.40
345 346 0.732571 CGCTCATACACCGCCAATTT 59.267 50.000 0.00 0.00 0.00 1.82
346 347 0.392461 ACGCTCATACACCGCCAATT 60.392 50.000 0.00 0.00 0.00 2.32
347 348 1.089481 CACGCTCATACACCGCCAAT 61.089 55.000 0.00 0.00 0.00 3.16
348 349 1.739929 CACGCTCATACACCGCCAA 60.740 57.895 0.00 0.00 0.00 4.52
349 350 2.125713 CACGCTCATACACCGCCA 60.126 61.111 0.00 0.00 0.00 5.69
350 351 1.878522 CTCACGCTCATACACCGCC 60.879 63.158 0.00 0.00 0.00 6.13
351 352 2.517450 GCTCACGCTCATACACCGC 61.517 63.158 0.00 0.00 0.00 5.68
352 353 1.139734 AGCTCACGCTCATACACCG 59.860 57.895 0.00 0.00 45.15 4.94
362 363 1.503542 CAACCCAATGAGCTCACGC 59.496 57.895 20.97 0.00 0.00 5.34
363 364 0.606401 ACCAACCCAATGAGCTCACG 60.606 55.000 20.97 13.34 0.00 4.35
364 365 0.883833 CACCAACCCAATGAGCTCAC 59.116 55.000 20.97 0.00 0.00 3.51
365 366 0.478072 ACACCAACCCAATGAGCTCA 59.522 50.000 20.79 20.79 0.00 4.26
366 367 2.488153 GTTACACCAACCCAATGAGCTC 59.512 50.000 6.82 6.82 0.00 4.09
367 368 2.514803 GTTACACCAACCCAATGAGCT 58.485 47.619 0.00 0.00 0.00 4.09
368 369 1.199097 CGTTACACCAACCCAATGAGC 59.801 52.381 0.00 0.00 33.19 4.26
369 370 1.199097 GCGTTACACCAACCCAATGAG 59.801 52.381 0.00 0.00 33.19 2.90
370 371 1.240256 GCGTTACACCAACCCAATGA 58.760 50.000 0.00 0.00 33.19 2.57
371 372 0.242555 GGCGTTACACCAACCCAATG 59.757 55.000 0.00 0.00 33.19 2.82
372 373 0.896479 GGGCGTTACACCAACCCAAT 60.896 55.000 0.00 0.00 40.52 3.16
373 374 1.528776 GGGCGTTACACCAACCCAA 60.529 57.895 0.00 0.00 40.52 4.12
374 375 2.113562 GGGCGTTACACCAACCCA 59.886 61.111 0.00 0.00 40.52 4.51
375 376 1.673337 GAGGGCGTTACACCAACCC 60.673 63.158 0.00 0.00 41.17 4.11
376 377 2.030958 CGAGGGCGTTACACCAACC 61.031 63.158 0.00 0.00 33.19 3.77
377 378 0.390735 ATCGAGGGCGTTACACCAAC 60.391 55.000 0.00 0.00 38.98 3.77
378 379 0.390603 CATCGAGGGCGTTACACCAA 60.391 55.000 0.00 0.00 38.98 3.67
379 380 1.216977 CATCGAGGGCGTTACACCA 59.783 57.895 0.00 0.00 38.98 4.17
380 381 2.171725 GCATCGAGGGCGTTACACC 61.172 63.158 0.00 0.00 38.98 4.16
381 382 3.395669 GCATCGAGGGCGTTACAC 58.604 61.111 0.00 0.00 38.98 2.90
389 390 1.107114 AGATATAGCCGCATCGAGGG 58.893 55.000 0.00 0.00 0.00 4.30
390 391 2.949451 AAGATATAGCCGCATCGAGG 57.051 50.000 0.00 0.00 0.00 4.63
391 392 2.848887 CGAAAGATATAGCCGCATCGAG 59.151 50.000 0.00 0.00 0.00 4.04
392 393 2.228103 ACGAAAGATATAGCCGCATCGA 59.772 45.455 8.62 0.00 33.61 3.59
393 394 2.596452 ACGAAAGATATAGCCGCATCG 58.404 47.619 0.00 0.00 35.36 3.84
394 395 4.323868 GTGTACGAAAGATATAGCCGCATC 59.676 45.833 0.00 0.00 0.00 3.91
395 396 4.235360 GTGTACGAAAGATATAGCCGCAT 58.765 43.478 0.00 0.00 0.00 4.73
396 397 3.067040 TGTGTACGAAAGATATAGCCGCA 59.933 43.478 0.00 0.00 0.00 5.69
397 398 3.424529 GTGTGTACGAAAGATATAGCCGC 59.575 47.826 0.00 0.00 0.00 6.53
398 399 3.979495 GGTGTGTACGAAAGATATAGCCG 59.021 47.826 0.00 0.00 0.00 5.52
399 400 4.940463 TGGTGTGTACGAAAGATATAGCC 58.060 43.478 0.00 0.00 0.00 3.93
400 401 5.589192 ACTGGTGTGTACGAAAGATATAGC 58.411 41.667 0.00 0.00 0.00 2.97
403 404 8.139989 GGTAATACTGGTGTGTACGAAAGATAT 58.860 37.037 0.00 0.00 0.00 1.63
404 405 7.340232 AGGTAATACTGGTGTGTACGAAAGATA 59.660 37.037 0.00 0.00 0.00 1.98
405 406 6.154021 AGGTAATACTGGTGTGTACGAAAGAT 59.846 38.462 0.00 0.00 0.00 2.40
406 407 5.477984 AGGTAATACTGGTGTGTACGAAAGA 59.522 40.000 0.00 0.00 0.00 2.52
407 408 5.717119 AGGTAATACTGGTGTGTACGAAAG 58.283 41.667 0.00 0.00 0.00 2.62
408 409 5.726980 AGGTAATACTGGTGTGTACGAAA 57.273 39.130 0.00 0.00 0.00 3.46
409 410 5.726980 AAGGTAATACTGGTGTGTACGAA 57.273 39.130 0.00 0.00 0.00 3.85
410 411 6.681120 GCATAAGGTAATACTGGTGTGTACGA 60.681 42.308 0.00 0.00 0.00 3.43
411 412 5.461078 GCATAAGGTAATACTGGTGTGTACG 59.539 44.000 0.00 0.00 0.00 3.67
414 415 5.429681 TGCATAAGGTAATACTGGTGTGT 57.570 39.130 0.00 0.00 0.00 3.72
420 421 7.490079 TGACTAACGTTGCATAAGGTAATACTG 59.510 37.037 11.99 0.00 34.08 2.74
425 426 5.539979 TGTGACTAACGTTGCATAAGGTAA 58.460 37.500 11.99 0.00 34.08 2.85
428 429 3.181520 GCTGTGACTAACGTTGCATAAGG 60.182 47.826 11.99 0.00 0.00 2.69
476 477 7.158697 TGTTCACTGCTATAAGCTTCTTTGTA 58.841 34.615 0.00 0.00 42.97 2.41
500 501 4.015872 ACACAAGTGTAACCCAGGTATG 57.984 45.455 3.64 0.00 42.90 2.39
558 561 1.001378 GGAAAGTTGATTGCACACGCT 60.001 47.619 0.00 0.00 39.64 5.07
560 563 2.772568 TGGAAAGTTGATTGCACACG 57.227 45.000 0.00 0.00 0.00 4.49
562 565 3.635836 TGTCATGGAAAGTTGATTGCACA 59.364 39.130 0.00 0.00 33.29 4.57
580 583 3.777106 ATTCTGCCAGAGAACTTGTCA 57.223 42.857 0.00 0.00 43.71 3.58
609 612 7.384477 ACGGGCTAATAATCCAATAAGACTAC 58.616 38.462 0.00 0.00 0.00 2.73
649 661 1.047002 CTGCGATCCTCCTCATCCTT 58.953 55.000 0.00 0.00 0.00 3.36
653 671 0.975135 CATCCTGCGATCCTCCTCAT 59.025 55.000 0.00 0.00 0.00 2.90
667 685 3.010584 AGTCCTTGCATTGTAACCATCCT 59.989 43.478 0.00 0.00 0.00 3.24
748 772 1.463056 GATTCAACATGGCGACGAACA 59.537 47.619 0.00 0.00 0.00 3.18
777 801 4.489771 CGTCCACCATGCCCCTCC 62.490 72.222 0.00 0.00 0.00 4.30
787 814 4.323417 TCATATATGATTTGGCGTCCACC 58.677 43.478 11.49 0.00 30.78 4.61
788 815 4.393062 CCTCATATATGATTTGGCGTCCAC 59.607 45.833 15.71 0.00 36.02 4.02
802 829 8.781951 CCCCTGGTATCATTAAACCTCATATAT 58.218 37.037 0.00 0.00 36.67 0.86
805 832 5.914716 ACCCCTGGTATCATTAAACCTCATA 59.085 40.000 0.00 0.00 36.67 2.15
807 834 4.080015 CACCCCTGGTATCATTAAACCTCA 60.080 45.833 0.00 0.00 36.67 3.86
833 860 0.248907 CGCGAATATCCACTCACCGT 60.249 55.000 0.00 0.00 0.00 4.83
834 861 0.030235 TCGCGAATATCCACTCACCG 59.970 55.000 6.20 0.00 0.00 4.94
835 862 1.772182 CTCGCGAATATCCACTCACC 58.228 55.000 11.33 0.00 0.00 4.02
836 863 1.132588 GCTCGCGAATATCCACTCAC 58.867 55.000 11.33 0.00 0.00 3.51
837 864 0.744281 TGCTCGCGAATATCCACTCA 59.256 50.000 11.33 0.00 0.00 3.41
838 865 1.789464 CTTGCTCGCGAATATCCACTC 59.211 52.381 11.33 0.00 0.00 3.51
839 866 1.858091 CTTGCTCGCGAATATCCACT 58.142 50.000 11.33 0.00 0.00 4.00
840 867 0.233332 GCTTGCTCGCGAATATCCAC 59.767 55.000 11.33 0.00 0.00 4.02
874 907 2.935238 GCCTTCGTATGCTCCAACTCAA 60.935 50.000 0.00 0.00 0.00 3.02
877 910 0.107654 GGCCTTCGTATGCTCCAACT 60.108 55.000 0.00 0.00 0.00 3.16
958 1024 5.032327 TGTGGATGATCATCAGGAGAAAG 57.968 43.478 31.49 0.00 39.54 2.62
1026 1101 7.037438 GCATTAGCATCTCAGGATTTTCAAAA 58.963 34.615 0.00 0.00 41.58 2.44
1067 1142 1.816183 CGTAGGCCCTCACCAACAAAA 60.816 52.381 0.00 0.00 0.00 2.44
1074 1149 1.742768 CTCATCGTAGGCCCTCACC 59.257 63.158 0.00 0.00 0.00 4.02
1076 1151 1.075970 AGCTCATCGTAGGCCCTCA 60.076 57.895 0.00 0.00 0.00 3.86
1089 1164 0.665298 CGATGATGTCCTCGAGCTCA 59.335 55.000 15.40 8.54 37.05 4.26
1115 1190 2.432510 CTGTCATCCTTAGGTGTCTCCC 59.567 54.545 0.00 0.00 36.75 4.30
1125 1206 8.134202 TCTGTGTAAATTCTCTGTCATCCTTA 57.866 34.615 0.00 0.00 0.00 2.69
1131 1215 4.284490 AGCCTCTGTGTAAATTCTCTGTCA 59.716 41.667 0.00 0.00 0.00 3.58
1158 1243 2.040544 CCCCGCGTTGCATTTCTCT 61.041 57.895 4.92 0.00 0.00 3.10
1176 1261 0.976590 AAGAGTCGGGCCTAGAACCC 60.977 60.000 0.84 10.10 44.63 4.11
1185 1270 2.706890 TGGTGAATAAAAGAGTCGGGC 58.293 47.619 0.00 0.00 0.00 6.13
1318 1466 0.684479 TCAGCGTGCAGGTATCCTCT 60.684 55.000 8.40 0.00 0.00 3.69
1335 1483 1.152030 ACCTGTTCCCAGAGCCTCA 60.152 57.895 0.00 0.00 41.50 3.86
1368 1516 2.301870 TGTCAACAGGACCCAGACATAC 59.698 50.000 0.00 0.00 46.38 2.39
1394 1542 0.178068 CGGAAATGTCTCCATCCCGT 59.822 55.000 0.00 0.00 34.91 5.28
1423 1571 1.604915 GCAGACCCTCCCTCCTTTC 59.395 63.158 0.00 0.00 0.00 2.62
1441 1589 3.907260 TTCCTTCGCTGGCAGCTGG 62.907 63.158 34.17 29.66 39.60 4.85
1445 1593 0.603707 TTGTCTTCCTTCGCTGGCAG 60.604 55.000 10.94 10.94 0.00 4.85
1448 1596 2.005451 CATCTTGTCTTCCTTCGCTGG 58.995 52.381 0.00 0.00 0.00 4.85
1450 1598 1.277557 AGCATCTTGTCTTCCTTCGCT 59.722 47.619 0.00 0.00 0.00 4.93
1455 1622 1.949547 GCAGCAGCATCTTGTCTTCCT 60.950 52.381 0.00 0.00 41.58 3.36
1462 1629 0.377554 GTAGCAGCAGCAGCATCTTG 59.622 55.000 12.92 0.00 45.49 3.02
1477 1644 0.392461 TCAGACCCAAATGCCGTAGC 60.392 55.000 0.00 0.00 40.48 3.58
1480 1647 1.247567 CTTTCAGACCCAAATGCCGT 58.752 50.000 0.00 0.00 0.00 5.68
1481 1648 1.068333 CACTTTCAGACCCAAATGCCG 60.068 52.381 0.00 0.00 0.00 5.69
1482 1649 2.238521 TCACTTTCAGACCCAAATGCC 58.761 47.619 0.00 0.00 0.00 4.40
1484 1651 3.305608 GCCTTCACTTTCAGACCCAAATG 60.306 47.826 0.00 0.00 0.00 2.32
1485 1652 2.893489 GCCTTCACTTTCAGACCCAAAT 59.107 45.455 0.00 0.00 0.00 2.32
1487 1654 1.214175 TGCCTTCACTTTCAGACCCAA 59.786 47.619 0.00 0.00 0.00 4.12
1488 1655 0.843309 TGCCTTCACTTTCAGACCCA 59.157 50.000 0.00 0.00 0.00 4.51
1489 1656 1.528129 CTGCCTTCACTTTCAGACCC 58.472 55.000 0.00 0.00 0.00 4.46
1490 1657 0.877743 GCTGCCTTCACTTTCAGACC 59.122 55.000 0.00 0.00 0.00 3.85
1491 1658 0.514691 CGCTGCCTTCACTTTCAGAC 59.485 55.000 0.00 0.00 0.00 3.51
1492 1659 1.230635 GCGCTGCCTTCACTTTCAGA 61.231 55.000 0.00 0.00 0.00 3.27
1495 1662 2.174349 CGCGCTGCCTTCACTTTC 59.826 61.111 5.56 0.00 0.00 2.62
1496 1663 4.030452 GCGCGCTGCCTTCACTTT 62.030 61.111 26.67 0.00 37.76 2.66
1499 1666 4.824166 CATGCGCGCTGCCTTCAC 62.824 66.667 33.29 0.00 45.60 3.18
1501 1668 4.527157 GACATGCGCGCTGCCTTC 62.527 66.667 33.29 16.75 45.60 3.46
1506 1673 2.937973 GAATGACGACATGCGCGCTG 62.938 60.000 33.29 27.27 46.04 5.18
1507 1674 2.802667 GAATGACGACATGCGCGCT 61.803 57.895 33.29 12.78 46.04 5.92
1508 1675 2.350091 GAATGACGACATGCGCGC 60.350 61.111 27.26 27.26 46.04 6.86
1509 1676 1.012998 CTGAATGACGACATGCGCG 60.013 57.895 0.00 0.00 46.04 6.86
1510 1677 1.349627 CCTGAATGACGACATGCGC 59.650 57.895 0.00 0.00 46.04 6.09
1512 1679 2.483877 TCAAACCTGAATGACGACATGC 59.516 45.455 0.05 0.00 36.79 4.06
1513 1680 3.425359 GCTCAAACCTGAATGACGACATG 60.425 47.826 0.05 0.00 36.79 3.21
1514 1681 2.744202 GCTCAAACCTGAATGACGACAT 59.256 45.455 0.00 0.00 38.50 3.06
1516 1683 2.413453 GAGCTCAAACCTGAATGACGAC 59.587 50.000 9.40 0.00 0.00 4.34
1518 1685 1.391485 CGAGCTCAAACCTGAATGACG 59.609 52.381 15.40 0.00 0.00 4.35
1519 1686 2.670414 CTCGAGCTCAAACCTGAATGAC 59.330 50.000 15.40 0.00 0.00 3.06
1520 1687 2.354103 CCTCGAGCTCAAACCTGAATGA 60.354 50.000 15.40 0.00 0.00 2.57
1521 1688 2.005451 CCTCGAGCTCAAACCTGAATG 58.995 52.381 15.40 0.00 0.00 2.67
1522 1689 1.902508 TCCTCGAGCTCAAACCTGAAT 59.097 47.619 15.40 0.00 0.00 2.57
1523 1690 1.338107 TCCTCGAGCTCAAACCTGAA 58.662 50.000 15.40 0.00 0.00 3.02
1524 1691 1.561643 ATCCTCGAGCTCAAACCTGA 58.438 50.000 15.40 0.26 0.00 3.86
1525 1692 3.742433 ATATCCTCGAGCTCAAACCTG 57.258 47.619 15.40 0.00 0.00 4.00
1527 1694 4.054671 CAGAATATCCTCGAGCTCAAACC 58.945 47.826 15.40 0.00 0.00 3.27
1529 1696 3.386078 AGCAGAATATCCTCGAGCTCAAA 59.614 43.478 15.40 0.00 29.29 2.69
1530 1697 2.961741 AGCAGAATATCCTCGAGCTCAA 59.038 45.455 15.40 0.00 29.29 3.02
1531 1698 2.591923 AGCAGAATATCCTCGAGCTCA 58.408 47.619 15.40 0.00 29.29 4.26
1532 1699 3.658757 AAGCAGAATATCCTCGAGCTC 57.341 47.619 6.99 2.73 32.66 4.09
1533 1700 4.148838 ACTAAGCAGAATATCCTCGAGCT 58.851 43.478 6.99 0.00 34.44 4.09
1534 1701 4.217550 AGACTAAGCAGAATATCCTCGAGC 59.782 45.833 6.99 0.00 0.00 5.03
1535 1702 5.957842 AGACTAAGCAGAATATCCTCGAG 57.042 43.478 5.13 5.13 0.00 4.04
1537 1704 5.242838 AGGAAGACTAAGCAGAATATCCTCG 59.757 44.000 0.00 0.00 28.91 4.63
1538 1705 6.664428 AGGAAGACTAAGCAGAATATCCTC 57.336 41.667 0.00 0.00 28.91 3.71
1539 1706 6.613271 TCAAGGAAGACTAAGCAGAATATCCT 59.387 38.462 0.00 0.00 36.37 3.24
1540 1707 6.821388 TCAAGGAAGACTAAGCAGAATATCC 58.179 40.000 0.00 0.00 0.00 2.59
1541 1708 8.772705 CAATCAAGGAAGACTAAGCAGAATATC 58.227 37.037 0.00 0.00 0.00 1.63
1542 1709 8.489489 TCAATCAAGGAAGACTAAGCAGAATAT 58.511 33.333 0.00 0.00 0.00 1.28
1543 1710 7.851228 TCAATCAAGGAAGACTAAGCAGAATA 58.149 34.615 0.00 0.00 0.00 1.75
1544 1711 6.715280 TCAATCAAGGAAGACTAAGCAGAAT 58.285 36.000 0.00 0.00 0.00 2.40
1545 1712 6.114187 TCAATCAAGGAAGACTAAGCAGAA 57.886 37.500 0.00 0.00 0.00 3.02
1553 1720 9.981460 AAGGTAAATAATCAATCAAGGAAGACT 57.019 29.630 0.00 0.00 0.00 3.24
1555 1722 9.753674 ACAAGGTAAATAATCAATCAAGGAAGA 57.246 29.630 0.00 0.00 0.00 2.87
1557 1724 9.753674 AGACAAGGTAAATAATCAATCAAGGAA 57.246 29.630 0.00 0.00 0.00 3.36
1558 1725 9.177608 CAGACAAGGTAAATAATCAATCAAGGA 57.822 33.333 0.00 0.00 0.00 3.36
1559 1726 7.917505 GCAGACAAGGTAAATAATCAATCAAGG 59.082 37.037 0.00 0.00 0.00 3.61
1560 1727 8.680903 AGCAGACAAGGTAAATAATCAATCAAG 58.319 33.333 0.00 0.00 0.00 3.02
1561 1728 8.579850 AGCAGACAAGGTAAATAATCAATCAA 57.420 30.769 0.00 0.00 0.00 2.57
1562 1729 9.679661 TTAGCAGACAAGGTAAATAATCAATCA 57.320 29.630 0.00 0.00 0.00 2.57
1564 1731 9.905713 TCTTAGCAGACAAGGTAAATAATCAAT 57.094 29.630 0.00 0.00 31.81 2.57
1567 1734 8.204836 TCCTCTTAGCAGACAAGGTAAATAATC 58.795 37.037 0.00 0.00 31.81 1.75
1571 1738 5.338463 GGTCCTCTTAGCAGACAAGGTAAAT 60.338 44.000 4.39 0.00 31.81 1.40
1575 1742 1.903183 GGTCCTCTTAGCAGACAAGGT 59.097 52.381 4.39 0.00 31.99 3.50
1576 1743 1.902508 TGGTCCTCTTAGCAGACAAGG 59.097 52.381 4.39 0.00 31.99 3.61
1586 1753 5.084519 AGTACAACAGACATGGTCCTCTTA 58.915 41.667 0.00 0.00 32.18 2.10
1588 1755 3.511477 AGTACAACAGACATGGTCCTCT 58.489 45.455 0.00 0.00 32.18 3.69
1589 1756 3.511934 AGAGTACAACAGACATGGTCCTC 59.488 47.826 0.00 0.00 32.18 3.71
1590 1757 3.511477 AGAGTACAACAGACATGGTCCT 58.489 45.455 0.00 0.00 32.18 3.85
1591 1758 3.673594 CGAGAGTACAACAGACATGGTCC 60.674 52.174 0.00 0.00 32.18 4.46
1592 1759 3.502920 CGAGAGTACAACAGACATGGTC 58.497 50.000 0.00 0.00 0.00 4.02
1593 1760 2.231478 CCGAGAGTACAACAGACATGGT 59.769 50.000 0.00 0.00 0.00 3.55
1594 1761 2.231478 ACCGAGAGTACAACAGACATGG 59.769 50.000 0.00 0.00 0.00 3.66
1606 1773 5.801531 AACATATAATGGCACCGAGAGTA 57.198 39.130 0.00 0.00 33.60 2.59
1607 1774 4.689612 AACATATAATGGCACCGAGAGT 57.310 40.909 0.00 0.00 33.60 3.24
1608 1775 4.319766 GCAAACATATAATGGCACCGAGAG 60.320 45.833 0.00 0.00 33.60 3.20
1609 1776 3.563808 GCAAACATATAATGGCACCGAGA 59.436 43.478 0.00 0.00 33.60 4.04
1610 1777 3.314913 TGCAAACATATAATGGCACCGAG 59.685 43.478 0.00 0.00 33.60 4.63
1611 1778 3.066064 GTGCAAACATATAATGGCACCGA 59.934 43.478 7.80 0.00 44.20 4.69
1612 1779 3.371168 GTGCAAACATATAATGGCACCG 58.629 45.455 7.80 0.00 44.20 4.94
1615 1782 4.535781 AGGAGTGCAAACATATAATGGCA 58.464 39.130 0.00 0.00 33.60 4.92
1616 1783 5.300286 AGAAGGAGTGCAAACATATAATGGC 59.700 40.000 0.00 0.00 33.60 4.40
1617 1784 6.319658 ACAGAAGGAGTGCAAACATATAATGG 59.680 38.462 0.00 0.00 33.60 3.16
1618 1785 7.281774 AGACAGAAGGAGTGCAAACATATAATG 59.718 37.037 0.00 0.00 0.00 1.90
1621 1788 6.299805 AGACAGAAGGAGTGCAAACATATA 57.700 37.500 0.00 0.00 0.00 0.86
1624 1791 3.498774 AGACAGAAGGAGTGCAAACAT 57.501 42.857 0.00 0.00 0.00 2.71
1629 1796 3.845781 AGAAAAGACAGAAGGAGTGCA 57.154 42.857 0.00 0.00 0.00 4.57
1647 1814 6.150318 GTCTTACATCGAACAGTGAGAAAGA 58.850 40.000 10.56 4.39 33.05 2.52
1648 1815 5.920840 TGTCTTACATCGAACAGTGAGAAAG 59.079 40.000 10.56 2.59 33.05 2.62
1649 1816 5.838529 TGTCTTACATCGAACAGTGAGAAA 58.161 37.500 10.56 4.92 33.05 2.52
1650 1817 5.447624 TGTCTTACATCGAACAGTGAGAA 57.552 39.130 10.56 2.47 33.05 2.87
1651 1818 5.048013 ACATGTCTTACATCGAACAGTGAGA 60.048 40.000 0.00 6.46 36.53 3.27
1659 1826 4.439153 GGGACGTACATGTCTTACATCGAA 60.439 45.833 0.00 0.00 36.53 3.71
1700 1879 1.545582 CACTTGCCTTACATGGGTTGG 59.454 52.381 0.00 0.00 0.00 3.77
1701 1880 2.513753 TCACTTGCCTTACATGGGTTG 58.486 47.619 0.00 0.00 0.00 3.77
1702 1881 2.969821 TCACTTGCCTTACATGGGTT 57.030 45.000 0.00 0.00 0.00 4.11
1704 1883 4.019174 AGATTTCACTTGCCTTACATGGG 58.981 43.478 0.00 0.00 0.00 4.00
1706 1885 7.281774 AGACATAGATTTCACTTGCCTTACATG 59.718 37.037 0.00 0.00 0.00 3.21
1714 1893 5.786401 ACGAAGACATAGATTTCACTTGC 57.214 39.130 0.00 0.00 0.00 4.01
1719 1898 7.201410 GCTAACGAAACGAAGACATAGATTTCA 60.201 37.037 0.00 0.00 0.00 2.69
1725 1904 4.265556 CAGGCTAACGAAACGAAGACATAG 59.734 45.833 0.00 0.00 0.00 2.23
1726 1905 4.171005 CAGGCTAACGAAACGAAGACATA 58.829 43.478 0.00 0.00 0.00 2.29
1732 1911 2.512485 TGACAGGCTAACGAAACGAA 57.488 45.000 0.00 0.00 0.00 3.85
1735 1914 4.154195 ACATGAATGACAGGCTAACGAAAC 59.846 41.667 0.00 0.00 33.22 2.78
1740 1919 4.507710 TCAGACATGAATGACAGGCTAAC 58.492 43.478 0.00 0.00 33.22 2.34
1747 1926 6.237887 TGGATACATCAGACATGAATGACA 57.762 37.500 0.00 0.00 46.17 3.58
1779 1958 0.532115 TGATTAGCTGAGCGCAGACA 59.468 50.000 22.55 9.22 45.17 3.41
1786 1965 8.207521 AGAAAGAAAACTATGATTAGCTGAGC 57.792 34.615 0.00 0.00 0.00 4.26
1796 1975 8.950210 GGATGACATGAAGAAAGAAAACTATGA 58.050 33.333 0.00 0.00 0.00 2.15
1797 1976 8.733458 TGGATGACATGAAGAAAGAAAACTATG 58.267 33.333 0.00 0.00 0.00 2.23
1798 1977 8.868522 TGGATGACATGAAGAAAGAAAACTAT 57.131 30.769 0.00 0.00 0.00 2.12
1800 1979 7.428826 GTTGGATGACATGAAGAAAGAAAACT 58.571 34.615 0.00 0.00 0.00 2.66
1801 1980 6.360681 CGTTGGATGACATGAAGAAAGAAAAC 59.639 38.462 0.00 0.00 0.00 2.43
1804 1983 5.063204 ACGTTGGATGACATGAAGAAAGAA 58.937 37.500 0.00 0.00 0.00 2.52
1806 2613 5.180117 AGAACGTTGGATGACATGAAGAAAG 59.820 40.000 5.00 0.00 0.00 2.62
1809 2616 4.271696 AGAACGTTGGATGACATGAAGA 57.728 40.909 5.00 0.00 0.00 2.87
1812 2619 4.801330 AGTAGAACGTTGGATGACATGA 57.199 40.909 5.00 0.00 0.00 3.07
1906 4860 1.808411 TTCCTTGCTTTAGCCTGTCG 58.192 50.000 0.00 0.00 41.18 4.35
1926 4880 1.539388 CGAGAGAGTGACACTGAAGCT 59.461 52.381 14.14 3.27 0.00 3.74
1971 5333 2.415608 TAACTCCCTCGAGGCTGCG 61.416 63.158 26.87 12.57 40.77 5.18
1975 5337 0.896226 AGTTGTAACTCCCTCGAGGC 59.104 55.000 26.87 11.70 40.77 4.70
2046 5408 5.474578 AGAATCACAAGCTACTGTTCAGA 57.525 39.130 6.83 0.00 0.00 3.27
2059 5421 2.158623 AGCAGGACACCAAGAATCACAA 60.159 45.455 0.00 0.00 0.00 3.33
2072 5460 2.289382 TGCAGTCGATAAAAGCAGGACA 60.289 45.455 0.00 0.00 0.00 4.02
2105 5493 1.599518 AACAAGCATCGACGCCCAA 60.600 52.632 0.00 0.00 0.00 4.12
2109 5497 0.721154 TGATCAACAAGCATCGACGC 59.279 50.000 0.00 0.00 0.00 5.19
2113 5501 2.096496 GGTTCCTGATCAACAAGCATCG 59.904 50.000 0.00 0.00 0.00 3.84
2116 5504 2.655090 TGGTTCCTGATCAACAAGCA 57.345 45.000 12.11 12.11 0.00 3.91
2117 5505 2.096496 CGATGGTTCCTGATCAACAAGC 59.904 50.000 0.00 2.81 0.00 4.01
2118 5506 2.679837 CCGATGGTTCCTGATCAACAAG 59.320 50.000 0.00 0.00 0.00 3.16
2263 5803 7.283127 TCAAATTCATCTAACAACCTGCCTATC 59.717 37.037 0.00 0.00 0.00 2.08
2332 5872 2.027192 AGTACATCATCGGCAGGTTGTT 60.027 45.455 0.00 0.00 0.00 2.83
2375 5915 1.517257 CACCTTAGGCAGAGACGCG 60.517 63.158 3.53 3.53 0.00 6.01
2380 5920 1.858091 CGTATGCACCTTAGGCAGAG 58.142 55.000 0.00 0.00 45.68 3.35
2381 5921 0.179084 GCGTATGCACCTTAGGCAGA 60.179 55.000 0.89 0.00 45.68 4.26
2432 5972 2.107750 ATGGATGTGAGCGAGGCG 59.892 61.111 0.00 0.00 0.00 5.52
2438 5978 2.528743 CGTCGCCATGGATGTGAGC 61.529 63.158 18.40 0.00 0.00 4.26
2479 6019 0.944386 GTGTGCAAATGGTGACGAGT 59.056 50.000 0.00 0.00 0.00 4.18
2483 6023 0.661187 CGCTGTGTGCAAATGGTGAC 60.661 55.000 0.00 0.00 43.06 3.67
2487 6027 0.661187 GTGACGCTGTGTGCAAATGG 60.661 55.000 0.00 0.00 43.06 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.