Multiple sequence alignment - TraesCS2A01G547800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G547800 chr2A 100.000 7327 0 0 779 8105 755768802 755776128 0.000000e+00 13531.0
1 TraesCS2A01G547800 chr2A 100.000 556 0 0 1 556 755768024 755768579 0.000000e+00 1027.0
2 TraesCS2A01G547800 chr2A 99.145 117 1 0 7767 7883 613004706 613004590 2.290000e-50 211.0
3 TraesCS2A01G547800 chr2A 93.750 128 8 0 6834 6961 755774691 755774818 8.300000e-45 193.0
4 TraesCS2A01G547800 chr2A 93.750 128 8 0 6668 6795 755774857 755774984 8.300000e-45 193.0
5 TraesCS2A01G547800 chr2A 86.139 101 12 2 1225 1324 724297753 724297852 3.090000e-19 108.0
6 TraesCS2A01G547800 chr2D 94.152 6019 210 72 795 6734 624361846 624367801 0.000000e+00 9034.0
7 TraesCS2A01G547800 chr2D 92.804 806 32 5 6821 7615 624367821 624368611 0.000000e+00 1144.0
8 TraesCS2A01G547800 chr2D 95.152 165 6 1 7880 8042 624368793 624368957 8.070000e-65 259.0
9 TraesCS2A01G547800 chr2D 84.838 277 14 11 292 556 624361521 624361781 3.750000e-63 254.0
10 TraesCS2A01G547800 chr2D 96.053 152 6 0 7619 7770 624368646 624368797 1.750000e-61 248.0
11 TraesCS2A01G547800 chr2D 92.771 166 11 1 4709 4874 556927094 556926930 1.050000e-58 239.0
12 TraesCS2A01G547800 chr2B 95.135 2302 80 15 4549 6839 766565141 766567421 0.000000e+00 3602.0
13 TraesCS2A01G547800 chr2B 93.649 1417 63 17 2526 3921 766563026 766564436 0.000000e+00 2093.0
14 TraesCS2A01G547800 chr2B 89.570 1582 79 39 779 2288 766557511 766559078 0.000000e+00 1929.0
15 TraesCS2A01G547800 chr2B 90.532 602 26 10 3948 4532 766564504 766565091 0.000000e+00 767.0
16 TraesCS2A01G547800 chr2B 96.687 332 9 1 6901 7230 766567422 766567753 1.190000e-152 551.0
17 TraesCS2A01G547800 chr2B 86.558 491 45 13 7619 8105 766568014 766568487 9.320000e-144 521.0
18 TraesCS2A01G547800 chr2B 95.652 276 11 1 1 276 198358295 198358021 7.470000e-120 442.0
19 TraesCS2A01G547800 chr2B 91.964 224 17 1 7393 7615 766567756 766567979 6.110000e-81 313.0
20 TraesCS2A01G547800 chr2B 92.417 211 14 2 2315 2525 766559074 766559282 4.750000e-77 300.0
21 TraesCS2A01G547800 chr2B 97.458 118 3 0 7768 7885 441077072 441076955 1.380000e-47 202.0
22 TraesCS2A01G547800 chr2B 87.356 174 6 7 303 476 766556945 766557102 1.390000e-42 185.0
23 TraesCS2A01G547800 chr2B 87.255 102 11 2 1225 1325 714128222 714128322 1.850000e-21 115.0
24 TraesCS2A01G547800 chr2B 96.000 50 2 0 1188 1237 776827242 776827193 1.870000e-11 82.4
25 TraesCS2A01G547800 chr3A 96.751 277 8 1 1 277 660194911 660195186 2.060000e-125 460.0
26 TraesCS2A01G547800 chr3A 94.737 57 3 0 4907 4963 259328981 259329037 1.120000e-13 89.8
27 TraesCS2A01G547800 chr3A 96.875 32 1 0 8069 8100 660448555 660448586 4.000000e-03 54.7
28 TraesCS2A01G547800 chr3B 95.775 284 10 2 1 283 672772091 672772373 2.670000e-124 457.0
29 TraesCS2A01G547800 chr3B 95.273 275 12 1 1 275 582990323 582990596 1.250000e-117 435.0
30 TraesCS2A01G547800 chr3B 96.000 50 2 0 1188 1237 798183349 798183300 1.870000e-11 82.4
31 TraesCS2A01G547800 chr3B 100.000 33 0 0 8068 8100 823524966 823524998 2.440000e-05 62.1
32 TraesCS2A01G547800 chr7A 95.714 280 11 1 1 280 657713271 657713549 4.460000e-122 449.0
33 TraesCS2A01G547800 chr7A 96.654 269 7 2 6 273 43514215 43513948 5.770000e-121 446.0
34 TraesCS2A01G547800 chr7A 92.771 166 9 2 4706 4871 544896067 544895905 3.780000e-58 237.0
35 TraesCS2A01G547800 chr7A 86.869 99 11 2 6265 6362 657716828 657716731 8.600000e-20 110.0
36 TraesCS2A01G547800 chr7A 100.000 32 0 0 8069 8100 504220476 504220445 8.780000e-05 60.2
37 TraesCS2A01G547800 chr7A 97.059 34 1 0 8067 8100 578987811 578987778 3.160000e-04 58.4
38 TraesCS2A01G547800 chr1B 96.000 275 10 1 1 275 550935808 550936081 5.770000e-121 446.0
39 TraesCS2A01G547800 chr1B 96.667 120 4 0 7767 7886 654278558 654278677 4.960000e-47 200.0
40 TraesCS2A01G547800 chr1B 89.552 67 5 2 4907 4973 476332804 476332868 5.210000e-12 84.2
41 TraesCS2A01G547800 chr6A 95.652 276 10 2 1 276 601202923 601203196 7.470000e-120 442.0
42 TraesCS2A01G547800 chr4B 95.636 275 10 2 4 277 99342488 99342215 2.680000e-119 440.0
43 TraesCS2A01G547800 chr4B 100.000 29 0 0 8072 8100 465732287 465732259 4.000000e-03 54.7
44 TraesCS2A01G547800 chr4D 93.252 163 11 0 4710 4872 34661527 34661689 2.920000e-59 241.0
45 TraesCS2A01G547800 chr4D 92.814 167 11 1 4710 4876 334164552 334164387 2.920000e-59 241.0
46 TraesCS2A01G547800 chr4D 92.537 134 8 2 7764 7896 492582487 492582355 2.990000e-44 191.0
47 TraesCS2A01G547800 chr1D 92.771 166 12 0 4709 4874 443117356 443117191 2.920000e-59 241.0
48 TraesCS2A01G547800 chr1D 92.262 168 12 1 4709 4876 332997174 332997340 3.780000e-58 237.0
49 TraesCS2A01G547800 chr1D 90.341 176 15 2 4709 4884 463382067 463381894 6.330000e-56 230.0
50 TraesCS2A01G547800 chr5D 95.385 130 5 1 7768 7897 138565671 138565543 1.070000e-48 206.0
51 TraesCS2A01G547800 chr5D 94.697 132 6 1 7766 7897 312934349 312934219 3.830000e-48 204.0
52 TraesCS2A01G547800 chr5D 96.639 119 4 0 7768 7886 264620806 264620688 1.780000e-46 198.0
53 TraesCS2A01G547800 chr5D 85.556 90 13 0 6273 6362 44912699 44912788 2.410000e-15 95.3
54 TraesCS2A01G547800 chr7B 93.284 134 7 2 7764 7896 554441436 554441568 6.420000e-46 196.0
55 TraesCS2A01G547800 chr7B 84.466 103 14 2 1223 1324 625300930 625300829 5.180000e-17 100.0
56 TraesCS2A01G547800 chr7B 84.848 99 13 2 6265 6362 625297033 625296936 1.860000e-16 99.0
57 TraesCS2A01G547800 chr7B 91.045 67 5 1 4907 4973 462530509 462530444 1.120000e-13 89.8
58 TraesCS2A01G547800 chr7D 84.848 99 13 2 6265 6362 568949869 568949772 1.860000e-16 99.0
59 TraesCS2A01G547800 chr7D 86.076 79 7 1 4907 4985 611587256 611587330 1.870000e-11 82.4
60 TraesCS2A01G547800 chr7D 100.000 29 0 0 8072 8100 431918917 431918889 4.000000e-03 54.7
61 TraesCS2A01G547800 chr5B 85.556 90 13 0 6273 6362 44781845 44781934 2.410000e-15 95.3
62 TraesCS2A01G547800 chr5B 96.000 50 2 0 1188 1237 619129806 619129855 1.870000e-11 82.4
63 TraesCS2A01G547800 chr5B 96.000 50 2 0 1188 1237 619182991 619183040 1.870000e-11 82.4
64 TraesCS2A01G547800 chr5B 96.000 50 2 0 1188 1237 626286372 626286421 1.870000e-11 82.4
65 TraesCS2A01G547800 chr5B 95.918 49 2 0 1188 1236 704261240 704261288 6.740000e-11 80.5
66 TraesCS2A01G547800 chr5B 97.059 34 1 0 8067 8100 23774532 23774499 3.160000e-04 58.4
67 TraesCS2A01G547800 chr5B 97.059 34 1 0 8067 8100 602249809 602249842 3.160000e-04 58.4
68 TraesCS2A01G547800 chr5A 85.556 90 13 0 6273 6362 35632277 35632366 2.410000e-15 95.3
69 TraesCS2A01G547800 chr5A 98.000 50 1 0 4907 4956 295072688 295072737 4.030000e-13 87.9
70 TraesCS2A01G547800 chr6B 82.524 103 18 0 1225 1327 140604460 140604358 3.120000e-14 91.6
71 TraesCS2A01G547800 chr6B 96.000 50 2 0 1188 1237 163648263 163648312 1.870000e-11 82.4
72 TraesCS2A01G547800 chr4A 89.855 69 5 2 4907 4975 548780883 548780817 4.030000e-13 87.9
73 TraesCS2A01G547800 chr4A 90.909 66 5 1 4907 4972 594012785 594012721 4.030000e-13 87.9
74 TraesCS2A01G547800 chr1A 88.000 75 8 1 4907 4980 251336973 251336899 4.030000e-13 87.9
75 TraesCS2A01G547800 chr6D 81.553 103 19 0 1225 1327 65505122 65505020 1.450000e-12 86.1
76 TraesCS2A01G547800 chr3D 97.059 34 1 0 8067 8100 47752675 47752708 3.160000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G547800 chr2A 755768024 755776128 8104 False 3736.000000 13531 96.875000 1 8105 4 chr2A.!!$F2 8104
1 TraesCS2A01G547800 chr2D 624361521 624368957 7436 False 2187.800000 9034 92.599800 292 8042 5 chr2D.!!$F1 7750
2 TraesCS2A01G547800 chr2B 766556945 766568487 11542 False 1140.111111 3602 91.540889 303 8105 9 chr2B.!!$F2 7802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.242825 GGCTTTTTAGGTGTTCGGGC 59.757 55.000 0.00 0.0 0.00 6.13 F
1555 1940 0.109597 GCATGCACGTCCTTTTCCTG 60.110 55.000 14.21 0.0 0.00 3.86 F
1757 2176 0.182061 ATGTGATGCCGATGGAGCTT 59.818 50.000 0.00 0.0 0.00 3.74 F
2545 6722 0.912486 ATGGGAGTCAGGCACTAACC 59.088 55.000 0.00 0.0 36.02 2.85 F
2657 6834 1.259142 TGGGCTCGTATTTCCCACGA 61.259 55.000 0.00 0.0 44.62 4.35 F
2905 7086 1.768870 ACTACTGGCTGGAGTGTGTTT 59.231 47.619 8.64 0.0 0.00 2.83 F
4101 8342 2.642154 TGTTTCCGCTGAGGGTTAAA 57.358 45.000 0.00 0.0 41.52 1.52 F
4701 8994 0.247460 TTCACCAGAGTCTCCATGCG 59.753 55.000 0.00 0.0 0.00 4.73 F
5560 9859 0.388649 CGTCTCTCCCAAGTCCAACG 60.389 60.000 0.00 0.0 0.00 4.10 F
5693 9992 1.351017 AGGGGAATTCGAAAGCTGTGA 59.649 47.619 0.00 0.0 0.00 3.58 F
5749 10048 1.660575 GCAGCAGCAGCAACAACAG 60.661 57.895 4.63 0.0 45.49 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 2157 0.182061 AAGCTCCATCGGCATCACAT 59.818 50.000 0.00 0.00 0.00 3.21 R
3356 7537 1.750018 CATCCTGAACCGCATGCCA 60.750 57.895 13.15 2.89 0.00 4.92 R
3612 7795 2.572095 TAGCCCAACGCACTGGATCG 62.572 60.000 2.57 0.00 38.96 3.69 R
4101 8342 2.562296 ACACCAGAATACCAGGGATGT 58.438 47.619 0.00 0.00 0.00 3.06 R
4379 8635 2.906389 AGGCTCCAGTCTTGATACACAA 59.094 45.455 0.00 0.00 36.97 3.33 R
4701 8994 1.400737 ACGGAGGGAGTATGTAGCAC 58.599 55.000 0.00 0.00 0.00 4.40 R
5743 10042 0.179129 GCTGTTGCTGTTGCTGTTGT 60.179 50.000 0.00 0.00 40.48 3.32 R
5750 10049 0.596600 CAAGCCTGCTGTTGCTGTTG 60.597 55.000 0.00 0.00 38.00 3.33 R
6723 11034 2.431782 GTCAATTAGGCACCGGGTACTA 59.568 50.000 6.32 2.85 0.00 1.82 R
6744 11055 2.775911 ACATGTGTCCTCAGACCATG 57.224 50.000 16.39 16.39 46.37 3.66 R
7747 12100 1.202463 ACTACGCACAGAGATGCCATC 60.202 52.381 0.00 0.00 42.99 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.874231 GCTCGGGCCTAGATTTTAAGC 59.126 52.381 9.63 0.00 0.00 3.09
47 48 2.495084 CTCGGGCCTAGATTTTAAGCC 58.505 52.381 0.84 0.00 43.09 4.35
50 51 2.632987 GGCCTAGATTTTAAGCCCGA 57.367 50.000 0.00 0.00 37.66 5.14
51 52 2.927028 GGCCTAGATTTTAAGCCCGAA 58.073 47.619 0.00 0.00 37.66 4.30
52 53 2.879026 GGCCTAGATTTTAAGCCCGAAG 59.121 50.000 0.00 0.00 37.66 3.79
85 86 2.679996 GCCTGGGCCCGTCATTTT 60.680 61.111 19.37 0.00 34.56 1.82
86 87 2.282783 GCCTGGGCCCGTCATTTTT 61.283 57.895 19.37 0.00 34.56 1.94
87 88 1.591183 CCTGGGCCCGTCATTTTTG 59.409 57.895 19.37 0.00 0.00 2.44
88 89 1.079888 CTGGGCCCGTCATTTTTGC 60.080 57.895 19.37 0.00 0.00 3.68
89 90 2.126110 GGGCCCGTCATTTTTGCG 60.126 61.111 5.69 0.00 0.00 4.85
90 91 2.809174 GGCCCGTCATTTTTGCGC 60.809 61.111 0.00 0.00 0.00 6.09
91 92 2.258286 GCCCGTCATTTTTGCGCT 59.742 55.556 9.73 0.00 0.00 5.92
92 93 1.372872 GCCCGTCATTTTTGCGCTT 60.373 52.632 9.73 0.00 0.00 4.68
93 94 0.943835 GCCCGTCATTTTTGCGCTTT 60.944 50.000 9.73 0.00 0.00 3.51
94 95 1.059942 CCCGTCATTTTTGCGCTTTC 58.940 50.000 9.73 0.00 0.00 2.62
95 96 1.059942 CCGTCATTTTTGCGCTTTCC 58.940 50.000 9.73 0.00 0.00 3.13
96 97 1.335872 CCGTCATTTTTGCGCTTTCCT 60.336 47.619 9.73 0.00 0.00 3.36
97 98 1.715519 CGTCATTTTTGCGCTTTCCTG 59.284 47.619 9.73 0.91 0.00 3.86
98 99 2.604373 CGTCATTTTTGCGCTTTCCTGA 60.604 45.455 9.73 3.60 0.00 3.86
99 100 3.380142 GTCATTTTTGCGCTTTCCTGAA 58.620 40.909 9.73 0.00 0.00 3.02
100 101 3.426525 GTCATTTTTGCGCTTTCCTGAAG 59.573 43.478 9.73 0.00 38.45 3.02
101 102 2.507339 TTTTTGCGCTTTCCTGAAGG 57.493 45.000 9.73 0.00 35.82 3.46
102 103 1.398692 TTTTGCGCTTTCCTGAAGGT 58.601 45.000 9.73 0.00 35.82 3.50
103 104 0.951558 TTTGCGCTTTCCTGAAGGTC 59.048 50.000 9.73 0.00 35.82 3.85
104 105 1.227999 TTGCGCTTTCCTGAAGGTCG 61.228 55.000 9.73 0.00 35.82 4.79
105 106 2.391389 GCGCTTTCCTGAAGGTCGG 61.391 63.158 0.00 0.00 35.82 4.79
106 107 1.741770 CGCTTTCCTGAAGGTCGGG 60.742 63.158 0.00 0.00 44.41 5.14
107 108 2.041115 GCTTTCCTGAAGGTCGGGC 61.041 63.158 0.00 0.00 42.73 6.13
108 109 1.377333 CTTTCCTGAAGGTCGGGCC 60.377 63.158 0.00 0.00 42.73 5.80
109 110 3.248446 TTTCCTGAAGGTCGGGCCG 62.248 63.158 22.51 22.51 42.73 6.13
141 142 3.588742 CCCGATGGGCTTTTTAGGT 57.411 52.632 0.00 0.00 35.35 3.08
142 143 1.102978 CCCGATGGGCTTTTTAGGTG 58.897 55.000 0.00 0.00 35.35 4.00
143 144 1.615919 CCCGATGGGCTTTTTAGGTGT 60.616 52.381 0.00 0.00 35.35 4.16
144 145 2.167662 CCGATGGGCTTTTTAGGTGTT 58.832 47.619 0.00 0.00 0.00 3.32
145 146 2.163613 CCGATGGGCTTTTTAGGTGTTC 59.836 50.000 0.00 0.00 0.00 3.18
146 147 2.159572 CGATGGGCTTTTTAGGTGTTCG 60.160 50.000 0.00 0.00 0.00 3.95
147 148 1.611519 TGGGCTTTTTAGGTGTTCGG 58.388 50.000 0.00 0.00 0.00 4.30
148 149 0.885879 GGGCTTTTTAGGTGTTCGGG 59.114 55.000 0.00 0.00 0.00 5.14
149 150 0.242825 GGCTTTTTAGGTGTTCGGGC 59.757 55.000 0.00 0.00 0.00 6.13
150 151 0.242825 GCTTTTTAGGTGTTCGGGCC 59.757 55.000 0.00 0.00 0.00 5.80
151 152 0.519961 CTTTTTAGGTGTTCGGGCCG 59.480 55.000 22.51 22.51 0.00 6.13
152 153 0.890090 TTTTTAGGTGTTCGGGCCGG 60.890 55.000 27.98 7.65 0.00 6.13
153 154 2.751357 TTTTAGGTGTTCGGGCCGGG 62.751 60.000 27.98 0.00 0.00 5.73
170 171 3.302344 GCTCGGGCCCAAAAAGCA 61.302 61.111 24.92 0.00 33.21 3.91
171 172 2.964978 CTCGGGCCCAAAAAGCAG 59.035 61.111 24.92 1.98 0.00 4.24
172 173 2.600173 TCGGGCCCAAAAAGCAGG 60.600 61.111 24.92 1.11 0.00 4.85
173 174 4.377708 CGGGCCCAAAAAGCAGGC 62.378 66.667 24.92 0.00 46.37 4.85
176 177 4.377708 GCCCAAAAAGCAGGCCCG 62.378 66.667 0.00 0.00 41.00 6.13
177 178 2.917227 CCCAAAAAGCAGGCCCGT 60.917 61.111 0.00 0.00 0.00 5.28
178 179 2.506957 CCCAAAAAGCAGGCCCGTT 61.507 57.895 0.00 0.00 0.00 4.44
179 180 1.300853 CCAAAAAGCAGGCCCGTTG 60.301 57.895 0.00 0.00 0.00 4.10
180 181 1.300853 CAAAAAGCAGGCCCGTTGG 60.301 57.895 0.00 0.00 0.00 3.77
181 182 1.760480 AAAAAGCAGGCCCGTTGGT 60.760 52.632 0.00 0.00 0.00 3.67
182 183 1.744320 AAAAAGCAGGCCCGTTGGTC 61.744 55.000 0.00 0.00 36.05 4.02
210 211 3.590574 GGGTCTGGGCCTGGGTTT 61.591 66.667 10.79 0.00 0.00 3.27
211 212 2.526110 GGTCTGGGCCTGGGTTTT 59.474 61.111 10.79 0.00 0.00 2.43
212 213 1.152333 GGTCTGGGCCTGGGTTTTT 60.152 57.895 10.79 0.00 0.00 1.94
227 228 1.005156 TTTTTGCATCGGGCTTGGC 60.005 52.632 0.00 0.00 45.15 4.52
228 229 1.470996 TTTTTGCATCGGGCTTGGCT 61.471 50.000 0.00 0.00 45.15 4.75
229 230 0.610509 TTTTGCATCGGGCTTGGCTA 60.611 50.000 0.00 0.00 45.15 3.93
230 231 1.031571 TTTGCATCGGGCTTGGCTAG 61.032 55.000 0.00 0.00 45.15 3.42
231 232 2.592861 GCATCGGGCTTGGCTAGG 60.593 66.667 0.00 0.00 40.25 3.02
270 271 4.256180 GCCCGAGGTATGGCCAGG 62.256 72.222 13.05 6.01 41.97 4.45
271 272 2.768344 CCCGAGGTATGGCCAGGT 60.768 66.667 13.05 0.00 40.61 4.00
272 273 1.458777 CCCGAGGTATGGCCAGGTA 60.459 63.158 13.05 0.00 40.61 3.08
273 274 0.836400 CCCGAGGTATGGCCAGGTAT 60.836 60.000 13.05 0.00 40.61 2.73
274 275 1.551560 CCCGAGGTATGGCCAGGTATA 60.552 57.143 13.05 0.00 40.61 1.47
275 276 1.825474 CCGAGGTATGGCCAGGTATAG 59.175 57.143 13.05 0.92 40.61 1.31
276 277 2.526432 CGAGGTATGGCCAGGTATAGT 58.474 52.381 13.05 0.00 40.61 2.12
277 278 2.492484 CGAGGTATGGCCAGGTATAGTC 59.508 54.545 13.05 0.23 40.61 2.59
278 279 3.780626 GAGGTATGGCCAGGTATAGTCT 58.219 50.000 13.05 0.00 40.61 3.24
279 280 3.764972 GAGGTATGGCCAGGTATAGTCTC 59.235 52.174 13.05 5.26 40.61 3.36
280 281 2.492484 GGTATGGCCAGGTATAGTCTCG 59.508 54.545 13.05 0.00 37.17 4.04
281 282 2.383442 ATGGCCAGGTATAGTCTCGT 57.617 50.000 13.05 0.00 0.00 4.18
282 283 1.688772 TGGCCAGGTATAGTCTCGTC 58.311 55.000 0.00 0.00 0.00 4.20
283 284 1.214673 TGGCCAGGTATAGTCTCGTCT 59.785 52.381 0.00 0.00 0.00 4.18
284 285 2.440627 TGGCCAGGTATAGTCTCGTCTA 59.559 50.000 0.00 0.00 0.00 2.59
285 286 3.074094 TGGCCAGGTATAGTCTCGTCTAT 59.926 47.826 0.00 0.00 35.24 1.98
286 287 3.690628 GGCCAGGTATAGTCTCGTCTATC 59.309 52.174 0.00 0.00 33.41 2.08
287 288 3.690628 GCCAGGTATAGTCTCGTCTATCC 59.309 52.174 0.00 0.00 33.41 2.59
288 289 4.566070 GCCAGGTATAGTCTCGTCTATCCT 60.566 50.000 0.00 0.00 33.04 3.24
289 290 4.938832 CCAGGTATAGTCTCGTCTATCCTG 59.061 50.000 19.69 19.69 40.42 3.86
290 291 5.280062 CCAGGTATAGTCTCGTCTATCCTGA 60.280 48.000 23.19 0.00 41.49 3.86
294 295 2.571212 AGTCTCGTCTATCCTGAGCAG 58.429 52.381 0.00 0.00 0.00 4.24
376 383 0.308376 TTTCGAAAACCCGCTTTCCG 59.692 50.000 8.44 0.00 32.63 4.30
393 400 1.107945 CCGACTTTCCTCTCTCCTCC 58.892 60.000 0.00 0.00 0.00 4.30
394 401 1.107945 CGACTTTCCTCTCTCCTCCC 58.892 60.000 0.00 0.00 0.00 4.30
395 402 1.341581 CGACTTTCCTCTCTCCTCCCT 60.342 57.143 0.00 0.00 0.00 4.20
396 403 2.384828 GACTTTCCTCTCTCCTCCCTC 58.615 57.143 0.00 0.00 0.00 4.30
397 404 1.341581 ACTTTCCTCTCTCCTCCCTCG 60.342 57.143 0.00 0.00 0.00 4.63
398 405 0.684805 TTTCCTCTCTCCTCCCTCGC 60.685 60.000 0.00 0.00 0.00 5.03
399 406 2.520741 CCTCTCTCCTCCCTCGCC 60.521 72.222 0.00 0.00 0.00 5.54
420 427 3.119990 CCTCGCCTCGCTTTATTCAAAAA 60.120 43.478 0.00 0.00 0.00 1.94
501 508 2.795297 GCTCCCAGTCGAGTCTCG 59.205 66.667 16.33 16.33 42.10 4.04
842 1157 3.795688 ATCCGTCCCATATTTGATGCT 57.204 42.857 0.00 0.00 0.00 3.79
846 1161 1.615392 GTCCCATATTTGATGCTGCCC 59.385 52.381 0.00 0.00 0.00 5.36
867 1182 2.290705 CCCTCCCTTTTTATCCGTGTGT 60.291 50.000 0.00 0.00 0.00 3.72
870 1185 4.082949 CCTCCCTTTTTATCCGTGTGTTTC 60.083 45.833 0.00 0.00 0.00 2.78
872 1187 3.499157 CCCTTTTTATCCGTGTGTTTCGA 59.501 43.478 0.00 0.00 0.00 3.71
1074 1416 1.679898 GGAGGAAGGTCAGTGGGTG 59.320 63.158 0.00 0.00 0.00 4.61
1085 1427 0.693049 CAGTGGGTGGCTAGGTCTTT 59.307 55.000 0.00 0.00 0.00 2.52
1086 1428 0.693049 AGTGGGTGGCTAGGTCTTTG 59.307 55.000 0.00 0.00 0.00 2.77
1109 1451 0.800012 TCGCTCGGTTGTTTATTGCC 59.200 50.000 0.00 0.00 0.00 4.52
1118 1460 2.728690 TGTTTATTGCCTGCTTGCTG 57.271 45.000 0.00 0.00 0.00 4.41
1119 1461 1.337074 TGTTTATTGCCTGCTTGCTGC 60.337 47.619 0.00 0.00 43.25 5.25
1120 1462 1.067354 GTTTATTGCCTGCTTGCTGCT 60.067 47.619 0.00 0.00 43.37 4.24
1122 1464 0.528924 TATTGCCTGCTTGCTGCTTG 59.471 50.000 0.00 0.00 43.37 4.01
1123 1465 2.781595 ATTGCCTGCTTGCTGCTTGC 62.782 55.000 0.00 5.85 43.37 4.01
1124 1466 3.681835 GCCTGCTTGCTGCTTGCT 61.682 61.111 15.63 0.00 43.37 3.91
1125 1467 2.567049 CCTGCTTGCTGCTTGCTC 59.433 61.111 15.63 0.00 43.37 4.26
1126 1468 2.567049 CTGCTTGCTGCTTGCTCC 59.433 61.111 15.63 0.00 43.37 4.70
1127 1469 2.203379 TGCTTGCTGCTTGCTCCA 60.203 55.556 15.63 0.00 43.37 3.86
1128 1470 2.257676 GCTTGCTGCTTGCTCCAC 59.742 61.111 0.00 0.00 43.37 4.02
1129 1471 2.559840 CTTGCTGCTTGCTCCACG 59.440 61.111 0.00 0.00 43.37 4.94
1130 1472 3.606065 CTTGCTGCTTGCTCCACGC 62.606 63.158 0.00 0.00 43.37 5.34
1362 1730 2.033194 CCCTCGGCTGTTTCGTTCC 61.033 63.158 0.00 0.00 0.00 3.62
1491 1876 1.688811 GCACATCCCCAACTACCCA 59.311 57.895 0.00 0.00 0.00 4.51
1541 1926 1.541475 CACGATGTCACAATGCATGC 58.459 50.000 11.82 11.82 0.00 4.06
1547 1932 0.454957 GTCACAATGCATGCACGTCC 60.455 55.000 25.37 11.80 0.00 4.79
1554 1939 0.537143 TGCATGCACGTCCTTTTCCT 60.537 50.000 18.46 0.00 0.00 3.36
1555 1940 0.109597 GCATGCACGTCCTTTTCCTG 60.110 55.000 14.21 0.00 0.00 3.86
1595 1991 3.799232 GCGGCGATCCTACTGTCTATTTT 60.799 47.826 12.98 0.00 0.00 1.82
1597 1993 4.499188 CGGCGATCCTACTGTCTATTTTGA 60.499 45.833 0.00 0.00 0.00 2.69
1651 2062 0.689080 AGGCTGATGTGGAGACCGAT 60.689 55.000 0.00 0.00 0.00 4.18
1747 2166 5.886960 AGTAGTTGAAAAGATGTGATGCC 57.113 39.130 0.00 0.00 0.00 4.40
1755 2174 0.250209 AGATGTGATGCCGATGGAGC 60.250 55.000 0.00 0.00 0.00 4.70
1757 2176 0.182061 ATGTGATGCCGATGGAGCTT 59.818 50.000 0.00 0.00 0.00 3.74
2098 2521 1.060713 CGCGGGATATTCATGACGTC 58.939 55.000 9.11 9.11 0.00 4.34
2113 2536 1.266175 GACGTCGAGTGGAAGTTCAGA 59.734 52.381 0.00 0.00 37.49 3.27
2134 2557 1.734465 CACATCTTCCGAGGCAAGTTC 59.266 52.381 0.00 0.00 0.00 3.01
2135 2558 1.625818 ACATCTTCCGAGGCAAGTTCT 59.374 47.619 0.00 0.00 0.00 3.01
2151 2574 2.376518 AGTTCTGAAAATCTCCAGGGCA 59.623 45.455 0.00 0.00 0.00 5.36
2162 2585 9.171877 GAAAATCTCCAGGGCATATATTCTTAG 57.828 37.037 0.00 0.00 0.00 2.18
2163 2586 5.683876 TCTCCAGGGCATATATTCTTAGC 57.316 43.478 0.00 0.00 0.00 3.09
2167 2593 5.046304 TCCAGGGCATATATTCTTAGCTCAC 60.046 44.000 0.00 0.00 0.00 3.51
2256 2682 7.656137 TGGTACAGTTTGACTTTCTTATCACTC 59.344 37.037 0.00 0.00 0.00 3.51
2294 2720 9.492973 AATCATGTCCTTTTAAACATTTCCAAG 57.507 29.630 0.00 0.00 33.92 3.61
2295 2721 8.243961 TCATGTCCTTTTAAACATTTCCAAGA 57.756 30.769 0.00 0.00 33.92 3.02
2296 2722 8.359642 TCATGTCCTTTTAAACATTTCCAAGAG 58.640 33.333 0.00 0.00 33.92 2.85
2297 2723 7.654022 TGTCCTTTTAAACATTTCCAAGAGT 57.346 32.000 0.00 0.00 0.00 3.24
2298 2724 7.488322 TGTCCTTTTAAACATTTCCAAGAGTG 58.512 34.615 0.00 0.00 0.00 3.51
2299 2725 6.420903 GTCCTTTTAAACATTTCCAAGAGTGC 59.579 38.462 0.00 0.00 0.00 4.40
2300 2726 5.696270 CCTTTTAAACATTTCCAAGAGTGCC 59.304 40.000 0.00 0.00 0.00 5.01
2301 2727 6.462909 CCTTTTAAACATTTCCAAGAGTGCCT 60.463 38.462 0.00 0.00 0.00 4.75
2302 2728 5.452078 TTAAACATTTCCAAGAGTGCCTG 57.548 39.130 0.00 0.00 0.00 4.85
2303 2729 2.664402 ACATTTCCAAGAGTGCCTGT 57.336 45.000 0.00 0.00 0.00 4.00
2304 2730 2.233271 ACATTTCCAAGAGTGCCTGTG 58.767 47.619 0.00 0.00 0.00 3.66
2305 2731 1.068055 CATTTCCAAGAGTGCCTGTGC 60.068 52.381 0.00 0.00 38.26 4.57
2308 2734 1.529010 CCAAGAGTGCCTGTGCCAA 60.529 57.895 0.00 0.00 36.33 4.52
2309 2735 1.656441 CAAGAGTGCCTGTGCCAAC 59.344 57.895 0.00 0.00 36.33 3.77
2310 2736 1.102809 CAAGAGTGCCTGTGCCAACA 61.103 55.000 0.00 0.00 36.33 3.33
2356 2783 5.012354 ACAATGTGATTTGGGCATCTCTTTT 59.988 36.000 0.00 0.00 0.00 2.27
2421 2848 5.049886 GCTTGCAAAAGAAGAAATTCTTGGG 60.050 40.000 13.55 3.42 40.81 4.12
2432 2859 9.674068 AGAAGAAATTCTTGGGAGTAATTACTC 57.326 33.333 29.84 29.84 43.06 2.59
2471 2902 2.260822 ACCTGAGTGCAGTACTGGATT 58.739 47.619 23.95 18.31 40.53 3.01
2545 6722 0.912486 ATGGGAGTCAGGCACTAACC 59.088 55.000 0.00 0.00 36.02 2.85
2657 6834 1.259142 TGGGCTCGTATTTCCCACGA 61.259 55.000 0.00 0.00 44.62 4.35
2905 7086 1.768870 ACTACTGGCTGGAGTGTGTTT 59.231 47.619 8.64 0.00 0.00 2.83
2984 7165 4.520492 ACTCTTTATTCTTGTGCTTGTGGG 59.480 41.667 0.00 0.00 0.00 4.61
3023 7204 7.496591 TGGTAAACAAGTAGGACTTACTGTTTG 59.503 37.037 21.64 11.62 41.80 2.93
3255 7436 3.988819 TGCTACATTTCCTTTTTGTGGC 58.011 40.909 4.01 4.01 44.96 5.01
3467 7648 4.503741 TTGTGCTCTTTATCCTTGTTGC 57.496 40.909 0.00 0.00 0.00 4.17
3535 7718 5.813157 GGCAATGACTAAAGTTACCTCTCTC 59.187 44.000 0.00 0.00 0.00 3.20
3536 7719 6.351456 GGCAATGACTAAAGTTACCTCTCTCT 60.351 42.308 0.00 0.00 0.00 3.10
3612 7795 3.553511 CGATAACAGAAGTGAGTGATGCC 59.446 47.826 0.00 0.00 0.00 4.40
3664 7847 7.171630 TGGAGATCAGTTAAGGTAAGAGTTC 57.828 40.000 0.00 0.00 0.00 3.01
4101 8342 2.642154 TGTTTCCGCTGAGGGTTAAA 57.358 45.000 0.00 0.00 41.52 1.52
4271 8527 7.056006 ACATGTAGATGGCATTCAAATCACTA 58.944 34.615 0.00 0.00 33.39 2.74
4337 8593 6.676558 ACATGGGATCAAGATTACCTTCATT 58.323 36.000 0.00 0.00 31.42 2.57
4338 8594 7.815383 ACATGGGATCAAGATTACCTTCATTA 58.185 34.615 0.00 0.00 31.42 1.90
4339 8595 8.451245 ACATGGGATCAAGATTACCTTCATTAT 58.549 33.333 0.00 0.00 31.42 1.28
4353 8609 7.153217 ACCTTCATTATTAACCTTTGGTTCG 57.847 36.000 5.16 0.00 43.05 3.95
4379 8635 7.195374 TGCTAAGTAGTGGAGTAATTGGAAT 57.805 36.000 0.00 0.00 0.00 3.01
4426 8685 2.774234 AGCCTGTAGTGTATGCCATCTT 59.226 45.455 0.00 0.00 0.00 2.40
4427 8686 3.200825 AGCCTGTAGTGTATGCCATCTTT 59.799 43.478 0.00 0.00 0.00 2.52
4521 8780 6.036083 CACTGGGAACGAATGTTATTAGTGAG 59.964 42.308 0.00 0.00 40.66 3.51
4525 8784 5.293569 GGAACGAATGTTATTAGTGAGGTGG 59.706 44.000 0.00 0.00 38.78 4.61
4571 8863 8.429493 TCTTGATATATGCAGAAACTGAAGTG 57.571 34.615 2.81 0.00 32.44 3.16
4701 8994 0.247460 TTCACCAGAGTCTCCATGCG 59.753 55.000 0.00 0.00 0.00 4.73
4759 9052 9.922305 GTCTTTTTAGAGATTCCAATATGAACG 57.078 33.333 0.00 0.00 0.00 3.95
4772 9065 6.701400 TCCAATATGAACGACATACTGATGTG 59.299 38.462 13.70 2.61 46.64 3.21
5251 9550 0.613777 CCTCCCAGTCTGGTGGTTAC 59.386 60.000 17.85 0.00 35.17 2.50
5308 9607 2.743183 GCAGTCACCTCAAGAACACTGT 60.743 50.000 0.00 0.00 34.87 3.55
5350 9649 1.540267 CAACAGATCTTGCAGCAAGCT 59.460 47.619 27.78 20.13 45.94 3.74
5560 9859 0.388649 CGTCTCTCCCAAGTCCAACG 60.389 60.000 0.00 0.00 0.00 4.10
5563 9862 0.388649 CTCTCCCAAGTCCAACGTCG 60.389 60.000 0.00 0.00 0.00 5.12
5693 9992 1.351017 AGGGGAATTCGAAAGCTGTGA 59.649 47.619 0.00 0.00 0.00 3.58
5743 10042 2.396157 CGATCAGCAGCAGCAGCAA 61.396 57.895 12.92 0.00 45.49 3.91
5749 10048 1.660575 GCAGCAGCAGCAACAACAG 60.661 57.895 4.63 0.00 45.49 3.16
5750 10049 1.660575 CAGCAGCAGCAACAACAGC 60.661 57.895 3.17 0.00 45.49 4.40
5751 10050 2.122797 AGCAGCAGCAACAACAGCA 61.123 52.632 3.17 0.00 45.49 4.41
5882 10181 4.318974 GCAAAATTGGTTCTGATGTGCAAC 60.319 41.667 0.00 0.00 37.35 4.17
5992 10291 3.133003 ACATGTCTACGATTCCTTCTGGG 59.867 47.826 0.00 0.00 0.00 4.45
6046 10345 4.039973 TGTTTGGACGACTCTTCTGGTATT 59.960 41.667 0.00 0.00 0.00 1.89
6113 10412 6.565811 CGTGAAGGTAGTTGTAGTACGTTGTA 60.566 42.308 0.00 0.00 33.70 2.41
6234 10536 4.832248 TCTCCAATTATGCTGAACTTCGT 58.168 39.130 0.00 0.00 0.00 3.85
6371 10673 4.462834 CCCTTGGGAGTAAGAAACCATTTC 59.537 45.833 0.00 0.00 39.96 2.17
6406 10708 8.924511 TGATTTCCTTTATGAGTTTTCTGAGT 57.075 30.769 0.00 0.00 0.00 3.41
6420 10722 9.871238 GAGTTTTCTGAGTGTTACTTATATCCA 57.129 33.333 0.00 0.00 0.00 3.41
6426 10728 8.400947 TCTGAGTGTTACTTATATCCACGTTAC 58.599 37.037 0.00 0.00 0.00 2.50
6561 10863 4.261825 GGATCGCATAGTATAGGAGATGGC 60.262 50.000 0.00 0.00 41.74 4.40
6642 10945 7.378728 GTGTTGCTAAACTTGGTTTTCTGATAC 59.621 37.037 0.99 0.00 37.01 2.24
6676 10979 5.899120 AGCTTATCAAGACACGTTCTAGA 57.101 39.130 0.00 0.00 32.51 2.43
6744 11055 1.208776 AGTACCCGGTGCCTAATTGAC 59.791 52.381 0.00 0.00 0.00 3.18
6910 11221 3.197983 AGAGTACCCAGTGCCTAATTGAC 59.802 47.826 0.00 0.00 0.00 3.18
6963 11274 4.397420 TGCAGAGTGTGTACAATTCCATT 58.603 39.130 0.00 0.00 0.00 3.16
7017 11328 3.737266 GTCAATTGTGCAGGTCATTTGTG 59.263 43.478 5.13 0.00 31.99 3.33
7147 11458 9.125026 CTGTTTCTGGTAATTAATATTGCTCCT 57.875 33.333 0.00 0.00 0.00 3.69
7168 11479 8.870879 GCTCCTTTGTTTACTTACTGTACATAG 58.129 37.037 0.00 0.00 0.00 2.23
7201 11512 6.541278 TGGATTTCATCATGAGCTCTGTTAAG 59.459 38.462 16.19 0.92 0.00 1.85
7269 11582 5.680594 AATGGCATGAAAGAATTGGCTTA 57.319 34.783 0.00 0.00 36.91 3.09
7270 11583 5.881923 ATGGCATGAAAGAATTGGCTTAT 57.118 34.783 0.00 0.00 36.91 1.73
7307 11620 3.332485 TGGAACCCCTTTTGTGTAGCTAT 59.668 43.478 0.00 0.00 0.00 2.97
7401 11720 6.351456 GGGGCTCATGATCTCTAACCTATAAC 60.351 46.154 0.00 0.00 0.00 1.89
7402 11721 6.211584 GGGCTCATGATCTCTAACCTATAACA 59.788 42.308 0.00 0.00 0.00 2.41
7403 11722 7.319646 GGCTCATGATCTCTAACCTATAACAG 58.680 42.308 0.00 0.00 0.00 3.16
7404 11723 7.177568 GGCTCATGATCTCTAACCTATAACAGA 59.822 40.741 0.00 0.00 0.00 3.41
7405 11724 8.580720 GCTCATGATCTCTAACCTATAACAGAA 58.419 37.037 0.00 0.00 0.00 3.02
7454 11773 7.038587 GGTGAAGTAGGTTTCCCCATTATTTTT 60.039 37.037 0.00 0.00 34.66 1.94
7489 11808 3.072184 AGGTGTTTGCTCTCAGACTTGAT 59.928 43.478 0.00 0.00 31.68 2.57
7500 11819 4.019860 TCTCAGACTTGATCCCCTGAAAAG 60.020 45.833 0.00 0.00 35.52 2.27
7600 11922 1.798813 CGTTTTGGTAGCTGGACAGAC 59.201 52.381 3.00 0.00 0.00 3.51
7607 11929 5.235850 TGGTAGCTGGACAGACAATAAAA 57.764 39.130 3.00 0.00 0.00 1.52
7615 11937 7.230510 AGCTGGACAGACAATAAAACACAAATA 59.769 33.333 3.00 0.00 0.00 1.40
7660 12013 6.620678 TGCTTTCAGAGTTAAATAATGGCAC 58.379 36.000 0.00 0.00 0.00 5.01
7747 12100 9.485206 ACTTTCATGGAGAAAATTCAGATTTTG 57.515 29.630 2.17 0.00 45.11 2.44
7766 12119 1.202452 TGATGGCATCTCTGTGCGTAG 60.202 52.381 26.49 0.00 45.97 3.51
7779 12132 0.745845 TGCGTAGTACTCCCTCCGTC 60.746 60.000 0.00 0.00 0.00 4.79
7781 12134 1.156645 CGTAGTACTCCCTCCGTCCG 61.157 65.000 0.00 0.00 0.00 4.79
7785 12138 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
7794 12147 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
7795 12148 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
7798 12151 3.119388 CGTCCGGAAATACTTGTCCTACA 60.119 47.826 5.23 0.00 0.00 2.74
7799 12152 4.618927 CGTCCGGAAATACTTGTCCTACAA 60.619 45.833 5.23 0.00 36.54 2.41
7800 12153 5.240121 GTCCGGAAATACTTGTCCTACAAA 58.760 41.667 5.23 0.00 37.69 2.83
7801 12154 5.878669 GTCCGGAAATACTTGTCCTACAAAT 59.121 40.000 5.23 0.00 37.69 2.32
7802 12155 5.878116 TCCGGAAATACTTGTCCTACAAATG 59.122 40.000 0.00 0.00 37.69 2.32
7803 12156 5.065988 CCGGAAATACTTGTCCTACAAATGG 59.934 44.000 0.00 0.00 37.69 3.16
7804 12157 5.878116 CGGAAATACTTGTCCTACAAATGGA 59.122 40.000 0.00 0.00 37.69 3.41
7805 12158 6.542370 CGGAAATACTTGTCCTACAAATGGAT 59.458 38.462 0.00 0.00 37.69 3.41
7806 12159 7.713507 CGGAAATACTTGTCCTACAAATGGATA 59.286 37.037 0.00 0.00 37.69 2.59
7807 12160 9.403583 GGAAATACTTGTCCTACAAATGGATAA 57.596 33.333 0.00 0.00 37.69 1.75
7855 12208 9.751542 AATAAGTCTAGATACAACCATTTCGAG 57.248 33.333 0.00 0.00 0.00 4.04
7859 12212 4.819105 AGATACAACCATTTCGAGGACA 57.181 40.909 0.00 0.00 0.00 4.02
7864 12217 4.906618 ACAACCATTTCGAGGACAAGTAT 58.093 39.130 0.00 0.00 0.00 2.12
7867 12220 6.072673 ACAACCATTTCGAGGACAAGTATTTC 60.073 38.462 0.00 0.00 0.00 2.17
7868 12221 4.941873 ACCATTTCGAGGACAAGTATTTCC 59.058 41.667 0.00 0.00 0.00 3.13
7870 12223 2.953466 TCGAGGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 36.95 5.14
7873 12226 2.737679 CGAGGACAAGTATTTCCGGACC 60.738 54.545 1.83 0.00 36.95 4.46
7888 12241 1.777941 GGACCGAGGGAGTACATCTT 58.222 55.000 0.00 0.00 0.00 2.40
7986 12342 2.029290 AGACGTCGGTTGCTTCTACATT 60.029 45.455 10.46 0.00 0.00 2.71
8047 12403 5.824624 TCAGAACTTGCTGAATTCTTGTCTT 59.175 36.000 7.05 0.00 41.65 3.01
8048 12404 6.992123 TCAGAACTTGCTGAATTCTTGTCTTA 59.008 34.615 7.05 0.00 41.65 2.10
8051 12407 7.663081 AGAACTTGCTGAATTCTTGTCTTATCA 59.337 33.333 7.05 0.00 28.03 2.15
8052 12408 7.375106 ACTTGCTGAATTCTTGTCTTATCAG 57.625 36.000 7.05 0.00 37.83 2.90
8053 12409 6.373774 ACTTGCTGAATTCTTGTCTTATCAGG 59.626 38.462 7.05 0.00 35.87 3.86
8054 12410 5.809001 TGCTGAATTCTTGTCTTATCAGGT 58.191 37.500 7.05 0.00 35.87 4.00
8056 12412 6.818644 TGCTGAATTCTTGTCTTATCAGGTAC 59.181 38.462 7.05 0.00 35.87 3.34
8058 12414 7.201565 GCTGAATTCTTGTCTTATCAGGTACAC 60.202 40.741 7.05 0.00 35.87 2.90
8059 12415 7.103641 TGAATTCTTGTCTTATCAGGTACACC 58.896 38.462 7.05 0.00 0.00 4.16
8060 12416 5.416271 TTCTTGTCTTATCAGGTACACCC 57.584 43.478 0.00 0.00 36.42 4.61
8062 12418 4.710375 TCTTGTCTTATCAGGTACACCCTC 59.290 45.833 0.00 0.00 43.86 4.30
8063 12419 3.371965 TGTCTTATCAGGTACACCCTCC 58.628 50.000 0.00 0.00 43.86 4.30
8064 12420 2.361438 GTCTTATCAGGTACACCCTCCG 59.639 54.545 0.00 0.00 43.86 4.63
8065 12421 2.242965 TCTTATCAGGTACACCCTCCGA 59.757 50.000 0.00 0.00 43.86 4.55
8066 12422 3.117246 TCTTATCAGGTACACCCTCCGAT 60.117 47.826 0.00 0.00 43.86 4.18
8067 12423 1.705873 ATCAGGTACACCCTCCGATC 58.294 55.000 0.00 0.00 43.86 3.69
8084 12440 3.495377 CCGATCGTTGTGGTTTTAGTTCA 59.505 43.478 15.09 0.00 0.00 3.18
8085 12441 4.024725 CCGATCGTTGTGGTTTTAGTTCAA 60.025 41.667 15.09 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.874231 GCTTAAAATCTAGGCCCGAGC 59.126 52.381 0.00 0.00 38.76 5.03
27 28 2.495084 GGCTTAAAATCTAGGCCCGAG 58.505 52.381 0.00 0.00 37.12 4.63
28 29 2.632987 GGCTTAAAATCTAGGCCCGA 57.367 50.000 0.00 0.00 37.12 5.14
32 33 2.879026 CCTTCGGGCTTAAAATCTAGGC 59.121 50.000 0.00 0.00 36.31 3.93
33 34 4.127907 GACCTTCGGGCTTAAAATCTAGG 58.872 47.826 0.00 0.00 39.10 3.02
34 35 3.802685 CGACCTTCGGGCTTAAAATCTAG 59.197 47.826 0.00 0.00 39.10 2.43
35 36 3.788937 CGACCTTCGGGCTTAAAATCTA 58.211 45.455 0.00 0.00 39.10 1.98
36 37 2.629051 CGACCTTCGGGCTTAAAATCT 58.371 47.619 0.00 0.00 39.10 2.40
68 69 2.282783 AAAAATGACGGGCCCAGGC 61.283 57.895 24.92 17.82 41.06 4.85
69 70 1.591183 CAAAAATGACGGGCCCAGG 59.409 57.895 24.92 9.21 0.00 4.45
70 71 1.079888 GCAAAAATGACGGGCCCAG 60.080 57.895 24.92 17.36 0.00 4.45
71 72 2.925262 CGCAAAAATGACGGGCCCA 61.925 57.895 24.92 1.51 0.00 5.36
72 73 2.126110 CGCAAAAATGACGGGCCC 60.126 61.111 13.57 13.57 0.00 5.80
73 74 2.763627 AAGCGCAAAAATGACGGGCC 62.764 55.000 11.47 0.00 39.23 5.80
74 75 0.943835 AAAGCGCAAAAATGACGGGC 60.944 50.000 11.47 0.00 38.75 6.13
75 76 1.059942 GAAAGCGCAAAAATGACGGG 58.940 50.000 11.47 0.00 0.00 5.28
76 77 1.059942 GGAAAGCGCAAAAATGACGG 58.940 50.000 11.47 0.00 0.00 4.79
77 78 1.715519 CAGGAAAGCGCAAAAATGACG 59.284 47.619 11.47 0.00 0.00 4.35
78 79 3.011949 TCAGGAAAGCGCAAAAATGAC 57.988 42.857 11.47 0.00 0.00 3.06
79 80 3.552684 CCTTCAGGAAAGCGCAAAAATGA 60.553 43.478 11.47 5.25 37.39 2.57
80 81 2.733026 CCTTCAGGAAAGCGCAAAAATG 59.267 45.455 11.47 2.50 37.39 2.32
81 82 2.365293 ACCTTCAGGAAAGCGCAAAAAT 59.635 40.909 11.47 0.00 38.94 1.82
82 83 1.754226 ACCTTCAGGAAAGCGCAAAAA 59.246 42.857 11.47 0.00 38.94 1.94
83 84 1.336755 GACCTTCAGGAAAGCGCAAAA 59.663 47.619 11.47 0.00 38.94 2.44
84 85 0.951558 GACCTTCAGGAAAGCGCAAA 59.048 50.000 11.47 0.00 38.94 3.68
85 86 1.227999 CGACCTTCAGGAAAGCGCAA 61.228 55.000 11.47 0.00 38.94 4.85
86 87 1.667830 CGACCTTCAGGAAAGCGCA 60.668 57.895 11.47 0.00 38.94 6.09
87 88 2.391389 CCGACCTTCAGGAAAGCGC 61.391 63.158 0.00 0.00 38.94 5.92
88 89 1.741770 CCCGACCTTCAGGAAAGCG 60.742 63.158 0.00 0.00 38.94 4.68
89 90 2.041115 GCCCGACCTTCAGGAAAGC 61.041 63.158 0.00 0.00 38.94 3.51
90 91 1.377333 GGCCCGACCTTCAGGAAAG 60.377 63.158 0.00 0.00 38.94 2.62
91 92 2.754375 GGCCCGACCTTCAGGAAA 59.246 61.111 0.00 0.00 38.94 3.13
92 93 3.702048 CGGCCCGACCTTCAGGAA 61.702 66.667 0.00 0.00 38.94 3.36
124 125 1.834188 ACACCTAAAAAGCCCATCGG 58.166 50.000 0.00 0.00 0.00 4.18
125 126 2.159572 CGAACACCTAAAAAGCCCATCG 60.160 50.000 0.00 0.00 0.00 3.84
126 127 2.163613 CCGAACACCTAAAAAGCCCATC 59.836 50.000 0.00 0.00 0.00 3.51
127 128 2.167662 CCGAACACCTAAAAAGCCCAT 58.832 47.619 0.00 0.00 0.00 4.00
128 129 1.611519 CCGAACACCTAAAAAGCCCA 58.388 50.000 0.00 0.00 0.00 5.36
129 130 0.885879 CCCGAACACCTAAAAAGCCC 59.114 55.000 0.00 0.00 0.00 5.19
130 131 0.242825 GCCCGAACACCTAAAAAGCC 59.757 55.000 0.00 0.00 0.00 4.35
131 132 0.242825 GGCCCGAACACCTAAAAAGC 59.757 55.000 0.00 0.00 0.00 3.51
132 133 0.519961 CGGCCCGAACACCTAAAAAG 59.480 55.000 0.00 0.00 0.00 2.27
133 134 0.890090 CCGGCCCGAACACCTAAAAA 60.890 55.000 3.71 0.00 0.00 1.94
134 135 1.302671 CCGGCCCGAACACCTAAAA 60.303 57.895 3.71 0.00 0.00 1.52
135 136 2.348243 CCGGCCCGAACACCTAAA 59.652 61.111 3.71 0.00 0.00 1.85
136 137 3.708544 CCCGGCCCGAACACCTAA 61.709 66.667 3.71 0.00 0.00 2.69
153 154 3.286915 CTGCTTTTTGGGCCCGAGC 62.287 63.158 24.41 24.41 38.76 5.03
154 155 2.639327 CCTGCTTTTTGGGCCCGAG 61.639 63.158 19.37 13.37 0.00 4.63
155 156 2.600173 CCTGCTTTTTGGGCCCGA 60.600 61.111 19.37 14.11 0.00 5.14
156 157 4.377708 GCCTGCTTTTTGGGCCCG 62.378 66.667 19.37 2.65 39.96 6.13
159 160 4.377708 CGGGCCTGCTTTTTGGGC 62.378 66.667 0.84 0.00 46.59 5.36
160 161 2.506957 AACGGGCCTGCTTTTTGGG 61.507 57.895 12.89 0.00 0.00 4.12
161 162 1.300853 CAACGGGCCTGCTTTTTGG 60.301 57.895 12.89 0.00 0.00 3.28
162 163 1.300853 CCAACGGGCCTGCTTTTTG 60.301 57.895 12.89 8.64 0.00 2.44
163 164 1.744320 GACCAACGGGCCTGCTTTTT 61.744 55.000 12.89 0.00 37.90 1.94
164 165 2.123468 ACCAACGGGCCTGCTTTT 60.123 55.556 12.89 0.00 37.90 2.27
165 166 2.597510 GACCAACGGGCCTGCTTT 60.598 61.111 12.89 0.00 37.90 3.51
193 194 2.673027 AAAAACCCAGGCCCAGACCC 62.673 60.000 0.00 0.00 0.00 4.46
194 195 1.152333 AAAAACCCAGGCCCAGACC 60.152 57.895 0.00 0.00 0.00 3.85
195 196 4.619233 AAAAACCCAGGCCCAGAC 57.381 55.556 0.00 0.00 0.00 3.51
209 210 1.005156 GCCAAGCCCGATGCAAAAA 60.005 52.632 0.00 0.00 44.83 1.94
210 211 0.610509 TAGCCAAGCCCGATGCAAAA 60.611 50.000 0.00 0.00 44.83 2.44
211 212 1.001517 TAGCCAAGCCCGATGCAAA 60.002 52.632 0.00 0.00 44.83 3.68
212 213 1.451927 CTAGCCAAGCCCGATGCAA 60.452 57.895 0.00 0.00 44.83 4.08
213 214 2.190313 CTAGCCAAGCCCGATGCA 59.810 61.111 0.00 0.00 44.83 3.96
214 215 2.592861 CCTAGCCAAGCCCGATGC 60.593 66.667 0.00 0.00 41.71 3.91
215 216 2.592861 GCCTAGCCAAGCCCGATG 60.593 66.667 0.00 0.00 0.00 3.84
254 255 0.836400 ATACCTGGCCATACCTCGGG 60.836 60.000 5.51 4.26 40.22 5.14
255 256 1.825474 CTATACCTGGCCATACCTCGG 59.175 57.143 5.51 5.16 40.22 4.63
256 257 2.492484 GACTATACCTGGCCATACCTCG 59.508 54.545 5.51 0.00 40.22 4.63
257 258 3.764972 GAGACTATACCTGGCCATACCTC 59.235 52.174 5.51 1.18 40.22 3.85
258 259 3.780626 GAGACTATACCTGGCCATACCT 58.219 50.000 5.51 0.00 40.22 3.08
259 260 2.492484 CGAGACTATACCTGGCCATACC 59.508 54.545 5.51 0.00 39.84 2.73
260 261 3.155501 ACGAGACTATACCTGGCCATAC 58.844 50.000 5.51 0.00 0.00 2.39
261 262 3.074094 AGACGAGACTATACCTGGCCATA 59.926 47.826 5.51 0.00 0.00 2.74
262 263 2.158445 AGACGAGACTATACCTGGCCAT 60.158 50.000 5.51 0.00 0.00 4.40
263 264 1.214673 AGACGAGACTATACCTGGCCA 59.785 52.381 4.71 4.71 0.00 5.36
264 265 1.984066 AGACGAGACTATACCTGGCC 58.016 55.000 0.00 0.00 0.00 5.36
265 266 3.690628 GGATAGACGAGACTATACCTGGC 59.309 52.174 0.00 0.00 33.85 4.85
266 267 4.938832 CAGGATAGACGAGACTATACCTGG 59.061 50.000 19.67 0.00 40.06 4.45
267 268 5.795972 TCAGGATAGACGAGACTATACCTG 58.204 45.833 20.45 20.45 41.96 4.00
268 269 5.570034 GCTCAGGATAGACGAGACTATACCT 60.570 48.000 0.00 5.13 35.06 3.08
269 270 4.632688 GCTCAGGATAGACGAGACTATACC 59.367 50.000 0.00 3.42 35.06 2.73
270 271 5.239351 TGCTCAGGATAGACGAGACTATAC 58.761 45.833 0.00 0.00 34.80 1.47
271 272 5.483811 CTGCTCAGGATAGACGAGACTATA 58.516 45.833 0.00 0.00 33.85 1.31
272 273 4.323417 CTGCTCAGGATAGACGAGACTAT 58.677 47.826 0.00 0.00 36.03 2.12
273 274 3.734463 CTGCTCAGGATAGACGAGACTA 58.266 50.000 0.00 0.00 0.00 2.59
274 275 2.571212 CTGCTCAGGATAGACGAGACT 58.429 52.381 0.00 0.00 0.00 3.24
287 288 2.182842 GCCCGTAATGCCTGCTCAG 61.183 63.158 0.00 0.00 0.00 3.35
288 289 2.124736 GCCCGTAATGCCTGCTCA 60.125 61.111 0.00 0.00 0.00 4.26
289 290 3.272334 CGCCCGTAATGCCTGCTC 61.272 66.667 0.00 0.00 0.00 4.26
290 291 4.856801 CCGCCCGTAATGCCTGCT 62.857 66.667 0.00 0.00 0.00 4.24
294 295 3.403593 TAACCCCGCCCGTAATGCC 62.404 63.158 0.00 0.00 0.00 4.40
376 383 2.384828 GAGGGAGGAGAGAGGAAAGTC 58.615 57.143 0.00 0.00 0.00 3.01
394 401 2.685387 ATAAAGCGAGGCGAGGCGAG 62.685 60.000 0.00 0.00 0.00 5.03
395 402 2.292794 AATAAAGCGAGGCGAGGCGA 62.293 55.000 0.00 0.00 0.00 5.54
396 403 1.822250 GAATAAAGCGAGGCGAGGCG 61.822 60.000 0.00 0.00 0.00 5.52
397 404 0.810031 TGAATAAAGCGAGGCGAGGC 60.810 55.000 0.00 0.00 0.00 4.70
398 405 1.651987 TTGAATAAAGCGAGGCGAGG 58.348 50.000 0.00 0.00 0.00 4.63
399 406 3.740044 TTTTGAATAAAGCGAGGCGAG 57.260 42.857 0.00 0.00 0.00 5.03
420 427 7.931407 GGAGAGAGAAAAGAGAAGAGAGTTTTT 59.069 37.037 0.00 0.00 0.00 1.94
421 428 7.290014 AGGAGAGAGAAAAGAGAAGAGAGTTTT 59.710 37.037 0.00 0.00 0.00 2.43
422 429 6.782494 AGGAGAGAGAAAAGAGAAGAGAGTTT 59.218 38.462 0.00 0.00 0.00 2.66
423 430 6.314917 AGGAGAGAGAAAAGAGAAGAGAGTT 58.685 40.000 0.00 0.00 0.00 3.01
424 431 5.892348 AGGAGAGAGAAAAGAGAAGAGAGT 58.108 41.667 0.00 0.00 0.00 3.24
425 432 6.094603 CAGAGGAGAGAGAAAAGAGAAGAGAG 59.905 46.154 0.00 0.00 0.00 3.20
426 433 5.945784 CAGAGGAGAGAGAAAAGAGAAGAGA 59.054 44.000 0.00 0.00 0.00 3.10
430 437 4.021544 GTGCAGAGGAGAGAGAAAAGAGAA 60.022 45.833 0.00 0.00 0.00 2.87
431 438 3.509575 GTGCAGAGGAGAGAGAAAAGAGA 59.490 47.826 0.00 0.00 0.00 3.10
432 439 3.511146 AGTGCAGAGGAGAGAGAAAAGAG 59.489 47.826 0.00 0.00 0.00 2.85
433 440 3.257873 CAGTGCAGAGGAGAGAGAAAAGA 59.742 47.826 0.00 0.00 0.00 2.52
434 441 3.006752 ACAGTGCAGAGGAGAGAGAAAAG 59.993 47.826 0.00 0.00 0.00 2.27
435 442 2.968574 ACAGTGCAGAGGAGAGAGAAAA 59.031 45.455 0.00 0.00 0.00 2.29
436 443 2.298446 CACAGTGCAGAGGAGAGAGAAA 59.702 50.000 0.00 0.00 0.00 2.52
482 489 1.745864 GAGACTCGACTGGGAGCGA 60.746 63.158 0.00 0.00 37.57 4.93
484 491 1.984321 GACGAGACTCGACTGGGAGC 61.984 65.000 30.56 6.04 43.74 4.70
485 492 1.370587 GGACGAGACTCGACTGGGAG 61.371 65.000 30.56 0.00 43.74 4.30
486 493 1.376942 GGACGAGACTCGACTGGGA 60.377 63.158 30.56 0.00 43.74 4.37
487 494 2.408241 GGGACGAGACTCGACTGGG 61.408 68.421 30.56 1.40 43.74 4.45
501 508 2.478033 CGGGGCATTTAAGCGGGAC 61.478 63.158 0.00 0.00 34.64 4.46
797 1099 1.810606 CGGCGCCTACCTCATCTCAT 61.811 60.000 26.68 0.00 0.00 2.90
822 1137 3.415212 CAGCATCAAATATGGGACGGAT 58.585 45.455 0.00 0.00 0.00 4.18
842 1157 0.634465 GGATAAAAAGGGAGGGGGCA 59.366 55.000 0.00 0.00 0.00 5.36
846 1161 2.290705 ACACACGGATAAAAAGGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
894 1220 1.010419 GCATTCTGCAACCAAAGCCG 61.010 55.000 0.00 0.00 44.26 5.52
972 1301 4.263572 CCCGCAACACCAGGACCA 62.264 66.667 0.00 0.00 0.00 4.02
1074 1416 0.796927 GCGAACACAAAGACCTAGCC 59.203 55.000 0.00 0.00 0.00 3.93
1085 1427 1.937278 TAAACAACCGAGCGAACACA 58.063 45.000 0.00 0.00 0.00 3.72
1086 1428 3.223157 CAATAAACAACCGAGCGAACAC 58.777 45.455 0.00 0.00 0.00 3.32
1362 1730 0.729116 CTTGCACGCATGGAGGTTAG 59.271 55.000 0.00 0.00 0.00 2.34
1541 1926 1.856265 GCAGGCAGGAAAAGGACGTG 61.856 60.000 0.00 0.00 0.00 4.49
1547 1932 1.815003 AGAAATCGCAGGCAGGAAAAG 59.185 47.619 0.00 0.00 0.00 2.27
1554 1939 1.660167 CATCTGAGAAATCGCAGGCA 58.340 50.000 13.12 0.00 42.81 4.75
1555 1940 0.307146 GCATCTGAGAAATCGCAGGC 59.693 55.000 13.12 6.91 42.81 4.85
1595 1991 1.376812 CTCAGCACCAGCAGCATCA 60.377 57.895 0.00 0.00 45.49 3.07
1597 1993 0.538977 AAACTCAGCACCAGCAGCAT 60.539 50.000 0.00 0.00 45.49 3.79
1651 2062 0.242555 TCATCTGCGCGTACACTTCA 59.757 50.000 8.43 0.00 0.00 3.02
1736 2155 0.250209 GCTCCATCGGCATCACATCT 60.250 55.000 0.00 0.00 0.00 2.90
1738 2157 0.182061 AAGCTCCATCGGCATCACAT 59.818 50.000 0.00 0.00 0.00 3.21
1747 2166 3.686241 TGAGAAAACATCAAGCTCCATCG 59.314 43.478 0.00 0.00 0.00 3.84
1755 2174 5.628193 GCAACACAGATGAGAAAACATCAAG 59.372 40.000 0.00 0.00 46.11 3.02
1757 2176 4.823442 AGCAACACAGATGAGAAAACATCA 59.177 37.500 0.00 0.00 46.11 3.07
1793 2215 2.047560 GGCAGGTAGGCGTCGTTT 60.048 61.111 0.00 0.00 33.57 3.60
2098 2521 2.509052 TGTGTCTGAACTTCCACTCG 57.491 50.000 0.00 0.00 0.00 4.18
2113 2536 0.687354 ACTTGCCTCGGAAGATGTGT 59.313 50.000 0.00 0.00 40.84 3.72
2134 2557 7.173722 AGAATATATGCCCTGGAGATTTTCAG 58.826 38.462 0.00 0.00 0.00 3.02
2135 2558 7.095183 AGAATATATGCCCTGGAGATTTTCA 57.905 36.000 0.00 0.00 0.00 2.69
2151 2574 7.231722 AGACTTCACGGTGAGCTAAGAATATAT 59.768 37.037 11.14 0.00 0.00 0.86
2162 2585 1.005630 AGCAGACTTCACGGTGAGC 60.006 57.895 11.14 10.69 0.00 4.26
2163 2586 0.668706 CCAGCAGACTTCACGGTGAG 60.669 60.000 11.14 8.25 0.00 3.51
2167 2593 0.034059 AAGACCAGCAGACTTCACGG 59.966 55.000 0.00 0.00 0.00 4.94
2256 2682 8.942338 AAAAGGACATGATTTGATCAATGATG 57.058 30.769 9.40 13.24 43.50 3.07
2294 2720 3.348236 CTGTTGGCACAGGCACTC 58.652 61.111 8.60 0.00 46.10 3.51
2301 2727 4.081406 AGCTGATATTTTCTGTTGGCACA 58.919 39.130 0.00 0.00 0.00 4.57
2302 2728 4.082571 ACAGCTGATATTTTCTGTTGGCAC 60.083 41.667 23.35 0.00 38.35 5.01
2303 2729 4.081406 ACAGCTGATATTTTCTGTTGGCA 58.919 39.130 23.35 0.00 38.35 4.92
2304 2730 4.708726 ACAGCTGATATTTTCTGTTGGC 57.291 40.909 23.35 0.00 38.35 4.52
2305 2731 5.106555 ACGAACAGCTGATATTTTCTGTTGG 60.107 40.000 23.35 16.94 46.17 3.77
2308 2734 4.142816 GCACGAACAGCTGATATTTTCTGT 60.143 41.667 23.35 12.06 41.08 3.41
2309 2735 4.142838 TGCACGAACAGCTGATATTTTCTG 60.143 41.667 23.35 13.14 0.00 3.02
2310 2736 4.002982 TGCACGAACAGCTGATATTTTCT 58.997 39.130 23.35 0.91 0.00 2.52
2311 2737 4.091424 GTGCACGAACAGCTGATATTTTC 58.909 43.478 23.35 12.23 0.00 2.29
2312 2738 3.501828 TGTGCACGAACAGCTGATATTTT 59.498 39.130 23.35 2.90 0.00 1.82
2367 2794 4.815269 AGAGAACTTCATGTACTGACTGC 58.185 43.478 0.00 0.00 32.17 4.40
2432 2859 2.223433 GGTTCCAGTGTAGTACGATCCG 60.223 54.545 0.00 0.00 0.00 4.18
2437 2868 2.818432 ACTCAGGTTCCAGTGTAGTACG 59.182 50.000 0.00 0.00 0.00 3.67
2545 6722 4.913335 AGAGTGCTCCATATGCAATTTG 57.087 40.909 0.00 0.00 42.41 2.32
2733 6913 3.561143 TGGCAACCTTTGTTAGTCATGT 58.439 40.909 0.00 0.00 32.09 3.21
2905 7086 3.396260 ACTAGTCTTTTGGCGCTAACA 57.604 42.857 5.38 0.00 0.00 2.41
3255 7436 8.190784 ACAAACATTCTTCTTTGTAAGACTTGG 58.809 33.333 0.00 0.00 38.53 3.61
3356 7537 1.750018 CATCCTGAACCGCATGCCA 60.750 57.895 13.15 2.89 0.00 4.92
3467 7648 3.815809 TGGTACCAAACAACCAAGAGAG 58.184 45.455 13.60 0.00 42.74 3.20
3612 7795 2.572095 TAGCCCAACGCACTGGATCG 62.572 60.000 2.57 0.00 38.96 3.69
3664 7847 9.971922 AGAACAAAATCATTAAGTGGAAAAGAG 57.028 29.630 0.00 0.00 0.00 2.85
4101 8342 2.562296 ACACCAGAATACCAGGGATGT 58.438 47.619 0.00 0.00 0.00 3.06
4337 8593 7.107542 ACTTAGCATCGAACCAAAGGTTAATA 58.892 34.615 0.67 0.00 46.95 0.98
4338 8594 5.944007 ACTTAGCATCGAACCAAAGGTTAAT 59.056 36.000 0.67 0.00 46.95 1.40
4339 8595 5.310451 ACTTAGCATCGAACCAAAGGTTAA 58.690 37.500 0.67 0.00 46.95 2.01
4353 8609 6.817184 TCCAATTACTCCACTACTTAGCATC 58.183 40.000 0.00 0.00 0.00 3.91
4379 8635 2.906389 AGGCTCCAGTCTTGATACACAA 59.094 45.455 0.00 0.00 36.97 3.33
4543 8802 7.974482 TCAGTTTCTGCATATATCAAGATGG 57.026 36.000 0.00 0.00 0.00 3.51
4561 8853 3.740115 AGCGGAATACACACTTCAGTTT 58.260 40.909 0.00 0.00 0.00 2.66
4701 8994 1.400737 ACGGAGGGAGTATGTAGCAC 58.599 55.000 0.00 0.00 0.00 4.40
4792 9085 3.694072 CGGAGCAAAATGGGTGAATCTAA 59.306 43.478 0.00 0.00 0.00 2.10
4802 9095 3.560068 GGACTACATACGGAGCAAAATGG 59.440 47.826 0.00 0.00 0.00 3.16
4982 9281 7.739498 AGAAAAACAGAAGTAAGCCGATTAA 57.261 32.000 0.00 0.00 0.00 1.40
5251 9550 7.925483 TGAAGGTTTAGGAATTGTTGTTTCATG 59.075 33.333 0.00 0.00 0.00 3.07
5293 9592 3.709653 TGAGGTTACAGTGTTCTTGAGGT 59.290 43.478 0.00 0.00 0.00 3.85
5482 9781 4.259356 TCTTCTGCTTCTGATCAATGTGG 58.741 43.478 0.00 0.00 0.00 4.17
5693 9992 5.809001 TGGCTGATTGAATCTAGACAAGTT 58.191 37.500 6.73 0.00 0.00 2.66
5743 10042 0.179129 GCTGTTGCTGTTGCTGTTGT 60.179 50.000 0.00 0.00 40.48 3.32
5749 10048 2.355481 GCCTGCTGTTGCTGTTGC 60.355 61.111 0.00 0.00 40.48 4.17
5750 10049 0.596600 CAAGCCTGCTGTTGCTGTTG 60.597 55.000 0.00 0.00 38.00 3.33
5751 10050 1.737816 CAAGCCTGCTGTTGCTGTT 59.262 52.632 0.00 0.00 38.00 3.16
5882 10181 5.165961 TGAGGACTAAAAAGGGACTGATG 57.834 43.478 0.00 0.00 40.86 3.07
5992 10291 4.009675 TGGGACTTTGCAGATATGTTGAC 58.990 43.478 0.00 0.00 0.00 3.18
6046 10345 7.106239 GGTCATTCTCTCCTGTATTCTGAAAA 58.894 38.462 0.00 0.00 0.00 2.29
6234 10536 3.056821 CGTACATCTGACCCAGTTCTTCA 60.057 47.826 0.00 0.00 32.61 3.02
6261 10563 3.558674 GTCATCCAACTGACCCCTG 57.441 57.895 0.00 0.00 39.72 4.45
6400 10702 7.400599 AACGTGGATATAAGTAACACTCAGA 57.599 36.000 0.00 0.00 0.00 3.27
6420 10722 4.817464 TGTAGCAACCTGAATTTGTAACGT 59.183 37.500 0.00 0.00 0.00 3.99
6426 10728 7.537715 TCATACATTGTAGCAACCTGAATTTG 58.462 34.615 2.53 0.00 0.00 2.32
6561 10863 7.816640 ACATACTACTTTGTGGCAACTAAATG 58.183 34.615 0.00 0.00 37.61 2.32
6642 10945 5.236047 GTCTTGATAAGCTATGAACTGCAGG 59.764 44.000 19.93 0.00 0.00 4.85
6723 11034 2.431782 GTCAATTAGGCACCGGGTACTA 59.568 50.000 6.32 2.85 0.00 1.82
6744 11055 2.775911 ACATGTGTCCTCAGACCATG 57.224 50.000 16.39 16.39 46.37 3.66
6870 11181 7.378966 GGTACTCTGCATACTCATTATTGCTA 58.621 38.462 0.00 0.00 0.00 3.49
6910 11221 2.847327 ACTTGTGTCCTCAGACCATG 57.153 50.000 0.00 0.00 42.81 3.66
7168 11479 9.837525 GAGCTCATGATGAAATCCAATAATTAC 57.162 33.333 9.40 0.00 44.73 1.89
7184 11495 8.045507 TCTGAATTTCTTAACAGAGCTCATGAT 58.954 33.333 17.77 8.61 35.01 2.45
7245 11558 5.014808 AGCCAATTCTTTCATGCCATTAC 57.985 39.130 0.00 0.00 0.00 1.89
7269 11582 4.414337 GTTCCAGACCAGAATGCTCTAT 57.586 45.455 0.00 0.00 31.97 1.98
7270 11583 3.895232 GTTCCAGACCAGAATGCTCTA 57.105 47.619 0.00 0.00 31.97 2.43
7320 11633 9.768215 TCTTATTTCTTTCTGTAATGGGGAAAT 57.232 29.630 0.00 0.00 36.40 2.17
7412 11731 8.651389 CCTACTTCACCCATGAATCTCTATTAA 58.349 37.037 0.00 0.00 43.92 1.40
7413 11732 7.789831 ACCTACTTCACCCATGAATCTCTATTA 59.210 37.037 0.00 0.00 43.92 0.98
7414 11733 6.617371 ACCTACTTCACCCATGAATCTCTATT 59.383 38.462 0.00 0.00 43.92 1.73
7415 11734 6.146760 ACCTACTTCACCCATGAATCTCTAT 58.853 40.000 0.00 0.00 43.92 1.98
7419 11738 5.501156 GAAACCTACTTCACCCATGAATCT 58.499 41.667 0.00 0.00 43.92 2.40
7454 11773 6.214819 AGAGCAAACACCTATTCTTACCCTAA 59.785 38.462 0.00 0.00 0.00 2.69
7455 11774 5.724854 AGAGCAAACACCTATTCTTACCCTA 59.275 40.000 0.00 0.00 0.00 3.53
7460 11779 6.211584 AGTCTGAGAGCAAACACCTATTCTTA 59.788 38.462 0.00 0.00 0.00 2.10
7489 11808 6.613153 TTTCAAAGTTTTCTTTTCAGGGGA 57.387 33.333 0.00 0.00 46.55 4.81
7557 11879 5.235186 CGACTGTCTTGACAAATCTCAAAGT 59.765 40.000 6.21 0.00 29.66 2.66
7558 11880 5.235186 ACGACTGTCTTGACAAATCTCAAAG 59.765 40.000 6.21 0.00 29.66 2.77
7615 11937 8.693120 AAGCATCAATTGTATGAGAAGATGAT 57.307 30.769 16.98 3.39 34.79 2.45
7747 12100 1.202463 ACTACGCACAGAGATGCCATC 60.202 52.381 0.00 0.00 42.99 3.51
7766 12119 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
7779 12132 5.065988 CCATTTGTAGGACAAGTATTTCCGG 59.934 44.000 0.00 0.00 39.53 5.14
7781 12134 7.881775 ATCCATTTGTAGGACAAGTATTTCC 57.118 36.000 0.00 0.00 39.53 3.13
7829 12182 9.751542 CTCGAAATGGTTGTATCTAGACTTATT 57.248 33.333 0.00 0.00 0.00 1.40
7830 12183 8.361139 CCTCGAAATGGTTGTATCTAGACTTAT 58.639 37.037 0.00 0.00 0.00 1.73
7833 12186 5.892119 TCCTCGAAATGGTTGTATCTAGACT 59.108 40.000 0.00 0.00 0.00 3.24
7834 12187 5.978322 GTCCTCGAAATGGTTGTATCTAGAC 59.022 44.000 0.00 0.00 0.00 2.59
7836 12189 5.902681 TGTCCTCGAAATGGTTGTATCTAG 58.097 41.667 0.00 0.00 0.00 2.43
7845 12198 4.941873 GGAAATACTTGTCCTCGAAATGGT 59.058 41.667 0.00 0.00 0.00 3.55
7853 12206 2.737679 CGGTCCGGAAATACTTGTCCTC 60.738 54.545 5.23 0.00 0.00 3.71
7854 12207 1.206371 CGGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 0.00 3.85
7855 12208 1.205417 TCGGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 0.00 4.02
7859 12212 0.828677 CCCTCGGTCCGGAAATACTT 59.171 55.000 5.23 0.00 0.00 2.24
7864 12217 0.967380 GTACTCCCTCGGTCCGGAAA 60.967 60.000 5.23 0.00 0.00 3.13
7867 12220 1.453762 GATGTACTCCCTCGGTCCGG 61.454 65.000 12.29 0.00 0.00 5.14
7868 12221 0.465824 AGATGTACTCCCTCGGTCCG 60.466 60.000 4.39 4.39 0.00 4.79
7870 12223 4.205587 TCTAAAGATGTACTCCCTCGGTC 58.794 47.826 0.00 0.00 0.00 4.79
7873 12226 7.764443 TGAATTTTCTAAAGATGTACTCCCTCG 59.236 37.037 0.00 0.00 0.00 4.63
7888 12241 5.333566 ACTTGGGGGTCTGAATTTTCTAA 57.666 39.130 0.00 0.00 0.00 2.10
7986 12342 3.485394 TGCTGTGCTGACTGGATAAAAA 58.515 40.909 0.00 0.00 0.00 1.94
8052 12408 0.179119 CAACGATCGGAGGGTGTACC 60.179 60.000 20.98 0.00 40.67 3.34
8053 12409 0.529378 ACAACGATCGGAGGGTGTAC 59.471 55.000 20.98 0.00 0.00 2.90
8054 12410 0.528924 CACAACGATCGGAGGGTGTA 59.471 55.000 20.98 0.00 0.00 2.90
8056 12412 1.447838 CCACAACGATCGGAGGGTG 60.448 63.158 20.98 19.08 0.00 4.61
8058 12414 0.321298 AAACCACAACGATCGGAGGG 60.321 55.000 20.98 16.60 0.00 4.30
8059 12415 1.519408 AAAACCACAACGATCGGAGG 58.481 50.000 20.98 16.56 0.00 4.30
8060 12416 3.323243 ACTAAAACCACAACGATCGGAG 58.677 45.455 20.98 13.55 0.00 4.63
8061 12417 3.389925 ACTAAAACCACAACGATCGGA 57.610 42.857 20.98 0.00 0.00 4.55
8062 12418 3.495377 TGAACTAAAACCACAACGATCGG 59.505 43.478 20.98 4.82 0.00 4.18
8063 12419 4.718858 TGAACTAAAACCACAACGATCG 57.281 40.909 14.88 14.88 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.