Multiple sequence alignment - TraesCS2A01G547100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G547100 chr2A 100.000 2564 0 0 1 2564 755459055 755456492 0.000000e+00 4735.0
1 TraesCS2A01G547100 chr2A 92.636 937 58 5 1204 2138 106654021 106654948 0.000000e+00 1338.0
2 TraesCS2A01G547100 chr5D 95.145 2142 98 5 1 2138 32980617 32982756 0.000000e+00 3374.0
3 TraesCS2A01G547100 chr7B 92.028 2145 152 8 1 2138 688126939 688129071 0.000000e+00 2996.0
4 TraesCS2A01G547100 chr6A 93.753 1969 119 2 1 1966 107835105 107837072 0.000000e+00 2952.0
5 TraesCS2A01G547100 chr4B 87.254 1930 233 8 214 2138 72718575 72720496 0.000000e+00 2189.0
6 TraesCS2A01G547100 chr7A 77.158 2132 451 30 12 2124 53169032 53171146 0.000000e+00 1206.0
7 TraesCS2A01G547100 chr7A 93.834 373 19 2 1767 2138 496818068 496817699 2.230000e-155 558.0
8 TraesCS2A01G547100 chr2B 72.840 2014 490 49 41 2024 53362454 53364440 1.000000e-178 636.0
9 TraesCS2A01G547100 chr2B 78.670 872 176 9 159 1023 488911802 488910934 2.860000e-159 571.0
10 TraesCS2A01G547100 chr2B 89.595 173 11 4 1967 2138 187200872 187201038 2.000000e-51 213.0
11 TraesCS2A01G547100 chr2B 89.017 173 12 4 1967 2138 188080990 188081156 9.300000e-50 207.0
12 TraesCS2A01G547100 chr2B 93.421 76 5 0 2063 2138 241926514 241926589 2.090000e-21 113.0
13 TraesCS2A01G547100 chr2B 92.308 65 5 0 1967 2031 241926450 241926514 2.720000e-15 93.5
14 TraesCS2A01G547100 chr5A 78.856 752 149 9 288 1032 275966032 275966780 1.370000e-137 499.0
15 TraesCS2A01G547100 chr4A 79.149 705 137 9 335 1032 720875355 720876056 1.780000e-131 479.0
16 TraesCS2A01G547100 chr6B 88.047 343 41 0 1590 1932 506839130 506838788 8.540000e-110 407.0
17 TraesCS2A01G547100 chr6B 88.554 166 13 1 1973 2138 506838782 506838623 2.010000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G547100 chr2A 755456492 755459055 2563 True 4735.0 4735 100.0000 1 2564 1 chr2A.!!$R1 2563
1 TraesCS2A01G547100 chr2A 106654021 106654948 927 False 1338.0 1338 92.6360 1204 2138 1 chr2A.!!$F1 934
2 TraesCS2A01G547100 chr5D 32980617 32982756 2139 False 3374.0 3374 95.1450 1 2138 1 chr5D.!!$F1 2137
3 TraesCS2A01G547100 chr7B 688126939 688129071 2132 False 2996.0 2996 92.0280 1 2138 1 chr7B.!!$F1 2137
4 TraesCS2A01G547100 chr6A 107835105 107837072 1967 False 2952.0 2952 93.7530 1 1966 1 chr6A.!!$F1 1965
5 TraesCS2A01G547100 chr4B 72718575 72720496 1921 False 2189.0 2189 87.2540 214 2138 1 chr4B.!!$F1 1924
6 TraesCS2A01G547100 chr7A 53169032 53171146 2114 False 1206.0 1206 77.1580 12 2124 1 chr7A.!!$F1 2112
7 TraesCS2A01G547100 chr2B 53362454 53364440 1986 False 636.0 636 72.8400 41 2024 1 chr2B.!!$F1 1983
8 TraesCS2A01G547100 chr2B 488910934 488911802 868 True 571.0 571 78.6700 159 1023 1 chr2B.!!$R1 864
9 TraesCS2A01G547100 chr5A 275966032 275966780 748 False 499.0 499 78.8560 288 1032 1 chr5A.!!$F1 744
10 TraesCS2A01G547100 chr4A 720875355 720876056 701 False 479.0 479 79.1490 335 1032 1 chr4A.!!$F1 697
11 TraesCS2A01G547100 chr6B 506838623 506839130 507 True 301.5 407 88.3005 1590 2138 2 chr6B.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 2.289840 TGCAGAGATGCACCAGCTA 58.710 52.632 0.0 0.0 40.23 3.32 F
1132 1137 1.474017 CTCGTCTACAATTACGCCCG 58.526 55.000 0.0 0.0 38.94 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1202 1207 0.460284 CGCTCGGCAAGGTATTGAGT 60.460 55.0 0.0 0.0 38.83 3.41 R
2168 2187 0.031994 CCGGTGGAAAAGTGGCTTTG 59.968 55.0 0.0 0.0 33.64 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.289840 TGCAGAGATGCACCAGCTA 58.710 52.632 0.00 0.00 40.23 3.32
68 69 5.122396 ACCTGTTATTTGCAGACGATTCTTC 59.878 40.000 0.00 0.00 36.12 2.87
74 75 4.685169 TTGCAGACGATTCTTCAATTCC 57.315 40.909 0.00 0.00 30.98 3.01
91 92 3.893326 TTCCGATGAGAGCAAATGAGA 57.107 42.857 0.00 0.00 0.00 3.27
131 132 8.251750 CTGAAAGTTGTTCTGGATTCGTATTA 57.748 34.615 0.00 0.00 0.00 0.98
267 269 9.454859 AAAGCTATAAATGATAAGTATCTGGGC 57.545 33.333 0.00 0.00 33.88 5.36
473 475 8.907222 AAAATTTGCAAAGGAATTACAGATGT 57.093 26.923 18.19 0.00 0.00 3.06
523 525 2.415090 GCATCACACAAGAGAATGCACC 60.415 50.000 0.00 0.00 34.12 5.01
690 695 6.583562 AGCAAAGTACTACCCTAATGATGAC 58.416 40.000 0.00 0.00 0.00 3.06
744 749 6.935741 TCGTATACTTGGCAAAGCATAATT 57.064 33.333 0.00 0.00 36.84 1.40
782 787 3.990092 TGAAGTGCGGTCATATATGGAC 58.010 45.455 12.78 9.24 34.52 4.02
1132 1137 1.474017 CTCGTCTACAATTACGCCCG 58.526 55.000 0.00 0.00 38.94 6.13
1202 1207 4.415881 TCACTTGGAGAGCACTTAACAA 57.584 40.909 0.00 0.00 0.00 2.83
1291 1296 4.520492 GTCATGATGGTCCTGAAACACTTT 59.480 41.667 0.00 0.00 0.00 2.66
1315 1320 1.362717 CTCCTGTTCGTGTGTCCGT 59.637 57.895 0.00 0.00 0.00 4.69
1411 1422 5.374071 GAGAAAGGGTGTTGGAGTTTCTTA 58.626 41.667 0.00 0.00 37.54 2.10
1437 1448 7.957002 TGAATCTTCCTGAGAACTATATCCAC 58.043 38.462 0.00 0.00 38.06 4.02
1513 1524 1.467920 GTGGGAAAGGAGGAAGCATG 58.532 55.000 0.00 0.00 0.00 4.06
1561 1572 1.282157 CCCAGGTTAGCCTAGCAGTTT 59.718 52.381 0.00 0.00 44.97 2.66
1603 1614 9.959721 ACTTTATTTCTGCTAATTCACCTAAGA 57.040 29.630 0.00 0.00 0.00 2.10
1680 1691 2.051518 GGATGCGGGGTTTGATGCA 61.052 57.895 0.00 0.00 42.22 3.96
1690 1701 3.146066 GGGTTTGATGCAGACACACTTA 58.854 45.455 11.01 0.00 0.00 2.24
1883 1894 3.712016 TTTGGAGGTAATAGCTGCACA 57.288 42.857 13.06 4.48 43.55 4.57
1916 1927 4.833478 ATTCATCTTCAGTAGCCAGTGT 57.167 40.909 0.00 0.00 0.00 3.55
2053 2066 3.392616 ACCTCCTGATGTATGGTTGGATC 59.607 47.826 0.00 0.00 0.00 3.36
2139 2158 6.824305 AAAGAGGAGGTTTATGTGTCAATG 57.176 37.500 0.00 0.00 0.00 2.82
2140 2159 4.848357 AGAGGAGGTTTATGTGTCAATGG 58.152 43.478 0.00 0.00 0.00 3.16
2141 2160 3.356290 AGGAGGTTTATGTGTCAATGGC 58.644 45.455 0.00 0.00 0.00 4.40
2142 2161 3.088532 GGAGGTTTATGTGTCAATGGCA 58.911 45.455 0.00 0.00 0.00 4.92
2143 2162 3.119495 GGAGGTTTATGTGTCAATGGCAC 60.119 47.826 11.55 11.55 37.37 5.01
2157 2176 2.594592 GCACAACCGCCTCCACTT 60.595 61.111 0.00 0.00 0.00 3.16
2158 2177 2.617274 GCACAACCGCCTCCACTTC 61.617 63.158 0.00 0.00 0.00 3.01
2159 2178 1.071471 CACAACCGCCTCCACTTCT 59.929 57.895 0.00 0.00 0.00 2.85
2160 2179 1.071471 ACAACCGCCTCCACTTCTG 59.929 57.895 0.00 0.00 0.00 3.02
2161 2180 2.032681 AACCGCCTCCACTTCTGC 59.967 61.111 0.00 0.00 0.00 4.26
2162 2181 2.818169 AACCGCCTCCACTTCTGCA 61.818 57.895 0.00 0.00 0.00 4.41
2163 2182 2.032528 CCGCCTCCACTTCTGCAA 59.967 61.111 0.00 0.00 0.00 4.08
2164 2183 2.037136 CCGCCTCCACTTCTGCAAG 61.037 63.158 0.00 0.00 35.50 4.01
2165 2184 1.004560 CGCCTCCACTTCTGCAAGA 60.005 57.895 0.00 0.00 44.68 3.02
2176 2195 1.597742 TCTGCAAGAGACAAAGCCAC 58.402 50.000 0.00 0.00 38.67 5.01
2177 2196 1.141657 TCTGCAAGAGACAAAGCCACT 59.858 47.619 0.00 0.00 38.67 4.00
2178 2197 1.952296 CTGCAAGAGACAAAGCCACTT 59.048 47.619 0.00 0.00 34.07 3.16
2179 2198 2.360165 CTGCAAGAGACAAAGCCACTTT 59.640 45.455 0.00 0.00 34.07 2.66
2180 2199 2.760092 TGCAAGAGACAAAGCCACTTTT 59.240 40.909 0.00 0.00 30.60 2.27
2181 2200 3.181487 TGCAAGAGACAAAGCCACTTTTC 60.181 43.478 0.00 0.00 30.60 2.29
2182 2201 3.796844 GCAAGAGACAAAGCCACTTTTCC 60.797 47.826 0.00 0.00 30.60 3.13
2183 2202 3.297134 AGAGACAAAGCCACTTTTCCA 57.703 42.857 0.00 0.00 30.60 3.53
2184 2203 2.952310 AGAGACAAAGCCACTTTTCCAC 59.048 45.455 0.00 0.00 30.60 4.02
2185 2204 2.031870 AGACAAAGCCACTTTTCCACC 58.968 47.619 0.00 0.00 30.60 4.61
2186 2205 0.744281 ACAAAGCCACTTTTCCACCG 59.256 50.000 0.00 0.00 30.60 4.94
2187 2206 0.031994 CAAAGCCACTTTTCCACCGG 59.968 55.000 0.00 0.00 30.60 5.28
2188 2207 1.112916 AAAGCCACTTTTCCACCGGG 61.113 55.000 6.32 0.00 28.27 5.73
2189 2208 2.002018 AAGCCACTTTTCCACCGGGA 62.002 55.000 6.32 0.00 43.03 5.14
2197 2216 3.068881 TCCACCGGGAAGAGCTTG 58.931 61.111 6.32 0.00 41.32 4.01
2198 2217 2.747855 CCACCGGGAAGAGCTTGC 60.748 66.667 6.32 0.00 35.59 4.01
2199 2218 2.032528 CACCGGGAAGAGCTTGCA 59.967 61.111 6.32 0.00 32.17 4.08
2200 2219 1.377725 CACCGGGAAGAGCTTGCAT 60.378 57.895 6.32 0.00 32.17 3.96
2201 2220 0.962356 CACCGGGAAGAGCTTGCATT 60.962 55.000 6.32 0.00 32.17 3.56
2202 2221 0.618458 ACCGGGAAGAGCTTGCATTA 59.382 50.000 6.32 0.00 32.17 1.90
2203 2222 1.004277 ACCGGGAAGAGCTTGCATTAA 59.996 47.619 6.32 0.00 32.17 1.40
2204 2223 2.301346 CCGGGAAGAGCTTGCATTAAT 58.699 47.619 0.00 0.00 32.17 1.40
2205 2224 2.033801 CCGGGAAGAGCTTGCATTAATG 59.966 50.000 11.27 11.27 32.17 1.90
2206 2225 2.033801 CGGGAAGAGCTTGCATTAATGG 59.966 50.000 17.02 1.95 32.17 3.16
2207 2226 3.026694 GGGAAGAGCTTGCATTAATGGT 58.973 45.455 17.02 0.00 32.17 3.55
2208 2227 3.448660 GGGAAGAGCTTGCATTAATGGTT 59.551 43.478 17.02 0.00 32.17 3.67
2209 2228 4.427312 GGAAGAGCTTGCATTAATGGTTG 58.573 43.478 17.02 0.00 0.00 3.77
2210 2229 4.082026 GGAAGAGCTTGCATTAATGGTTGT 60.082 41.667 17.02 0.00 0.00 3.32
2211 2230 5.473039 GAAGAGCTTGCATTAATGGTTGTT 58.527 37.500 17.02 3.77 0.00 2.83
2212 2231 4.813027 AGAGCTTGCATTAATGGTTGTTG 58.187 39.130 17.02 0.00 0.00 3.33
2213 2232 3.328505 AGCTTGCATTAATGGTTGTTGC 58.671 40.909 17.02 2.86 0.00 4.17
2214 2233 2.416202 GCTTGCATTAATGGTTGTTGCC 59.584 45.455 17.02 0.00 32.39 4.52
2215 2234 2.360553 TGCATTAATGGTTGTTGCCG 57.639 45.000 17.02 0.00 32.39 5.69
2216 2235 0.998669 GCATTAATGGTTGTTGCCGC 59.001 50.000 17.02 0.00 0.00 6.53
2217 2236 1.671261 GCATTAATGGTTGTTGCCGCA 60.671 47.619 17.02 0.00 0.00 5.69
2218 2237 2.891112 CATTAATGGTTGTTGCCGCAT 58.109 42.857 7.62 0.00 0.00 4.73
2219 2238 3.260740 CATTAATGGTTGTTGCCGCATT 58.739 40.909 7.62 0.00 0.00 3.56
2220 2239 3.393089 TTAATGGTTGTTGCCGCATTT 57.607 38.095 0.00 0.00 0.00 2.32
2221 2240 1.794512 AATGGTTGTTGCCGCATTTC 58.205 45.000 0.00 0.00 0.00 2.17
2222 2241 0.678395 ATGGTTGTTGCCGCATTTCA 59.322 45.000 0.00 0.00 0.00 2.69
2223 2242 0.678395 TGGTTGTTGCCGCATTTCAT 59.322 45.000 0.00 0.00 0.00 2.57
2224 2243 1.070038 GGTTGTTGCCGCATTTCATG 58.930 50.000 0.00 0.00 0.00 3.07
2225 2244 1.605202 GGTTGTTGCCGCATTTCATGT 60.605 47.619 0.00 0.00 0.00 3.21
2226 2245 2.352225 GGTTGTTGCCGCATTTCATGTA 60.352 45.455 0.00 0.00 0.00 2.29
2227 2246 3.510719 GTTGTTGCCGCATTTCATGTAT 58.489 40.909 0.00 0.00 0.00 2.29
2228 2247 3.419264 TGTTGCCGCATTTCATGTATC 57.581 42.857 0.00 0.00 0.00 2.24
2229 2248 3.016031 TGTTGCCGCATTTCATGTATCT 58.984 40.909 0.00 0.00 0.00 1.98
2230 2249 3.443329 TGTTGCCGCATTTCATGTATCTT 59.557 39.130 0.00 0.00 0.00 2.40
2231 2250 3.969117 TGCCGCATTTCATGTATCTTC 57.031 42.857 0.00 0.00 0.00 2.87
2232 2251 3.277715 TGCCGCATTTCATGTATCTTCA 58.722 40.909 0.00 0.00 0.00 3.02
2233 2252 3.065233 TGCCGCATTTCATGTATCTTCAC 59.935 43.478 0.00 0.00 0.00 3.18
2234 2253 3.548818 GCCGCATTTCATGTATCTTCACC 60.549 47.826 0.00 0.00 0.00 4.02
2235 2254 3.879295 CCGCATTTCATGTATCTTCACCT 59.121 43.478 0.00 0.00 0.00 4.00
2236 2255 4.024556 CCGCATTTCATGTATCTTCACCTC 60.025 45.833 0.00 0.00 0.00 3.85
2237 2256 4.571984 CGCATTTCATGTATCTTCACCTCA 59.428 41.667 0.00 0.00 0.00 3.86
2238 2257 5.237996 CGCATTTCATGTATCTTCACCTCAT 59.762 40.000 0.00 0.00 0.00 2.90
2239 2258 6.565435 CGCATTTCATGTATCTTCACCTCATC 60.565 42.308 0.00 0.00 0.00 2.92
2240 2259 6.261603 GCATTTCATGTATCTTCACCTCATCA 59.738 38.462 0.00 0.00 0.00 3.07
2241 2260 7.637229 CATTTCATGTATCTTCACCTCATCAC 58.363 38.462 0.00 0.00 0.00 3.06
2242 2261 5.282055 TCATGTATCTTCACCTCATCACC 57.718 43.478 0.00 0.00 0.00 4.02
2243 2262 4.964897 TCATGTATCTTCACCTCATCACCT 59.035 41.667 0.00 0.00 0.00 4.00
2244 2263 4.743057 TGTATCTTCACCTCATCACCTG 57.257 45.455 0.00 0.00 0.00 4.00
2245 2264 3.452264 TGTATCTTCACCTCATCACCTGG 59.548 47.826 0.00 0.00 0.00 4.45
2246 2265 0.615331 TCTTCACCTCATCACCTGGC 59.385 55.000 0.00 0.00 0.00 4.85
2247 2266 0.742281 CTTCACCTCATCACCTGGCG 60.742 60.000 0.00 0.00 0.00 5.69
2248 2267 2.803155 TTCACCTCATCACCTGGCGC 62.803 60.000 0.00 0.00 0.00 6.53
2249 2268 4.457496 ACCTCATCACCTGGCGCG 62.457 66.667 0.00 0.00 0.00 6.86
2250 2269 4.147449 CCTCATCACCTGGCGCGA 62.147 66.667 12.10 0.00 0.00 5.87
2251 2270 2.107750 CTCATCACCTGGCGCGAT 59.892 61.111 12.10 0.00 0.00 4.58
2252 2271 1.953138 CTCATCACCTGGCGCGATC 60.953 63.158 12.10 0.51 0.00 3.69
2253 2272 2.969238 CATCACCTGGCGCGATCC 60.969 66.667 12.10 2.07 0.00 3.36
2254 2273 3.469970 ATCACCTGGCGCGATCCA 61.470 61.111 12.10 8.00 34.42 3.41
2255 2274 3.030168 ATCACCTGGCGCGATCCAA 62.030 57.895 12.10 0.00 35.36 3.53
2256 2275 2.329539 ATCACCTGGCGCGATCCAAT 62.330 55.000 12.10 0.00 35.36 3.16
2257 2276 2.114670 CACCTGGCGCGATCCAATT 61.115 57.895 12.10 0.00 35.36 2.32
2258 2277 1.819632 ACCTGGCGCGATCCAATTC 60.820 57.895 12.10 0.00 35.36 2.17
2259 2278 2.546494 CCTGGCGCGATCCAATTCC 61.546 63.158 12.10 0.00 35.36 3.01
2260 2279 1.819208 CTGGCGCGATCCAATTCCA 60.819 57.895 12.10 3.56 35.36 3.53
2261 2280 2.051804 CTGGCGCGATCCAATTCCAC 62.052 60.000 12.10 0.00 35.36 4.02
2262 2281 2.715624 GCGCGATCCAATTCCACC 59.284 61.111 12.10 0.00 0.00 4.61
2263 2282 2.834618 GCGCGATCCAATTCCACCC 61.835 63.158 12.10 0.00 0.00 4.61
2264 2283 2.186826 CGCGATCCAATTCCACCCC 61.187 63.158 0.00 0.00 0.00 4.95
2265 2284 1.227383 GCGATCCAATTCCACCCCT 59.773 57.895 0.00 0.00 0.00 4.79
2266 2285 1.103398 GCGATCCAATTCCACCCCTG 61.103 60.000 0.00 0.00 0.00 4.45
2267 2286 0.255890 CGATCCAATTCCACCCCTGT 59.744 55.000 0.00 0.00 0.00 4.00
2268 2287 1.340991 CGATCCAATTCCACCCCTGTT 60.341 52.381 0.00 0.00 0.00 3.16
2269 2288 2.820178 GATCCAATTCCACCCCTGTTT 58.180 47.619 0.00 0.00 0.00 2.83
2270 2289 2.302587 TCCAATTCCACCCCTGTTTC 57.697 50.000 0.00 0.00 0.00 2.78
2271 2290 1.203125 TCCAATTCCACCCCTGTTTCC 60.203 52.381 0.00 0.00 0.00 3.13
2272 2291 1.266178 CAATTCCACCCCTGTTTCCC 58.734 55.000 0.00 0.00 0.00 3.97
2273 2292 1.167033 AATTCCACCCCTGTTTCCCT 58.833 50.000 0.00 0.00 0.00 4.20
2274 2293 0.704664 ATTCCACCCCTGTTTCCCTC 59.295 55.000 0.00 0.00 0.00 4.30
2275 2294 0.402861 TTCCACCCCTGTTTCCCTCT 60.403 55.000 0.00 0.00 0.00 3.69
2276 2295 1.133809 TCCACCCCTGTTTCCCTCTG 61.134 60.000 0.00 0.00 0.00 3.35
2277 2296 1.380302 CACCCCTGTTTCCCTCTGG 59.620 63.158 0.00 0.00 0.00 3.86
2278 2297 1.133809 CACCCCTGTTTCCCTCTGGA 61.134 60.000 0.00 0.00 39.54 3.86
2279 2298 0.842467 ACCCCTGTTTCCCTCTGGAG 60.842 60.000 0.00 0.00 43.07 3.86
2280 2299 1.301293 CCCTGTTTCCCTCTGGAGC 59.699 63.158 0.00 0.00 43.07 4.70
2281 2300 1.078848 CCTGTTTCCCTCTGGAGCG 60.079 63.158 0.00 0.00 43.07 5.03
2282 2301 1.743252 CTGTTTCCCTCTGGAGCGC 60.743 63.158 0.00 0.00 43.07 5.92
2283 2302 2.347490 GTTTCCCTCTGGAGCGCA 59.653 61.111 11.47 0.00 43.07 6.09
2284 2303 2.035442 GTTTCCCTCTGGAGCGCAC 61.035 63.158 11.47 1.97 43.07 5.34
2285 2304 2.217038 TTTCCCTCTGGAGCGCACT 61.217 57.895 11.47 0.00 43.07 4.40
2286 2305 2.172483 TTTCCCTCTGGAGCGCACTC 62.172 60.000 11.47 0.00 43.07 3.51
2287 2306 4.504916 CCCTCTGGAGCGCACTCG 62.505 72.222 11.47 0.00 44.48 4.18
2288 2307 3.753434 CCTCTGGAGCGCACTCGT 61.753 66.667 11.47 0.00 44.48 4.18
2289 2308 2.259818 CTCTGGAGCGCACTCGTT 59.740 61.111 11.47 0.00 44.48 3.85
2290 2309 1.373497 CTCTGGAGCGCACTCGTTT 60.373 57.895 11.47 0.00 44.48 3.60
2291 2310 0.946221 CTCTGGAGCGCACTCGTTTT 60.946 55.000 11.47 0.00 44.48 2.43
2292 2311 0.944311 TCTGGAGCGCACTCGTTTTC 60.944 55.000 11.47 0.00 44.48 2.29
2293 2312 1.221466 CTGGAGCGCACTCGTTTTCA 61.221 55.000 11.47 0.00 44.48 2.69
2294 2313 1.221466 TGGAGCGCACTCGTTTTCAG 61.221 55.000 11.47 0.00 44.48 3.02
2295 2314 1.493311 GAGCGCACTCGTTTTCAGG 59.507 57.895 11.47 0.00 38.14 3.86
2296 2315 1.222115 GAGCGCACTCGTTTTCAGGT 61.222 55.000 11.47 0.00 38.14 4.00
2297 2316 1.082756 GCGCACTCGTTTTCAGGTG 60.083 57.895 0.30 0.00 38.14 4.00
2298 2317 1.772063 GCGCACTCGTTTTCAGGTGT 61.772 55.000 0.30 0.00 38.14 4.16
2299 2318 1.493772 CGCACTCGTTTTCAGGTGTA 58.506 50.000 0.00 0.00 32.90 2.90
2300 2319 2.066262 CGCACTCGTTTTCAGGTGTAT 58.934 47.619 0.00 0.00 32.90 2.29
2301 2320 3.247442 CGCACTCGTTTTCAGGTGTATA 58.753 45.455 0.00 0.00 32.90 1.47
2302 2321 3.676172 CGCACTCGTTTTCAGGTGTATAA 59.324 43.478 0.00 0.00 32.90 0.98
2303 2322 4.150980 CGCACTCGTTTTCAGGTGTATAAA 59.849 41.667 0.00 0.00 32.90 1.40
2304 2323 5.379827 GCACTCGTTTTCAGGTGTATAAAC 58.620 41.667 0.00 0.00 32.90 2.01
2305 2324 5.616204 GCACTCGTTTTCAGGTGTATAAACC 60.616 44.000 3.58 3.58 40.85 3.27
2306 2325 4.687483 ACTCGTTTTCAGGTGTATAAACCG 59.313 41.667 6.43 2.39 45.53 4.44
2307 2326 4.880759 TCGTTTTCAGGTGTATAAACCGA 58.119 39.130 6.43 4.70 45.53 4.69
2308 2327 4.685628 TCGTTTTCAGGTGTATAAACCGAC 59.314 41.667 6.43 1.94 45.53 4.79
2309 2328 4.143052 CGTTTTCAGGTGTATAAACCGACC 60.143 45.833 6.43 0.00 45.53 4.79
2310 2329 3.615224 TTCAGGTGTATAAACCGACCC 57.385 47.619 6.43 0.00 45.53 4.46
2311 2330 2.538222 TCAGGTGTATAAACCGACCCA 58.462 47.619 6.43 0.00 45.53 4.51
2312 2331 2.234414 TCAGGTGTATAAACCGACCCAC 59.766 50.000 6.43 0.00 45.53 4.61
2313 2332 2.235402 CAGGTGTATAAACCGACCCACT 59.765 50.000 6.43 0.00 45.53 4.00
2314 2333 2.908351 AGGTGTATAAACCGACCCACTT 59.092 45.455 6.43 0.00 45.53 3.16
2315 2334 3.055602 AGGTGTATAAACCGACCCACTTC 60.056 47.826 6.43 0.00 45.53 3.01
2316 2335 3.264947 GTGTATAAACCGACCCACTTCC 58.735 50.000 0.00 0.00 0.00 3.46
2317 2336 2.094078 TGTATAAACCGACCCACTTCCG 60.094 50.000 0.00 0.00 0.00 4.30
2318 2337 0.392060 ATAAACCGACCCACTTCCGC 60.392 55.000 0.00 0.00 0.00 5.54
2319 2338 1.474332 TAAACCGACCCACTTCCGCT 61.474 55.000 0.00 0.00 0.00 5.52
2320 2339 2.726822 AAACCGACCCACTTCCGCTC 62.727 60.000 0.00 0.00 0.00 5.03
2321 2340 3.691342 CCGACCCACTTCCGCTCA 61.691 66.667 0.00 0.00 0.00 4.26
2322 2341 2.432628 CGACCCACTTCCGCTCAC 60.433 66.667 0.00 0.00 0.00 3.51
2323 2342 2.432628 GACCCACTTCCGCTCACG 60.433 66.667 0.00 0.00 39.67 4.35
2333 2352 4.043168 CGCTCACGGACACCTTTT 57.957 55.556 0.00 0.00 34.97 2.27
2334 2353 2.317230 CGCTCACGGACACCTTTTT 58.683 52.632 0.00 0.00 34.97 1.94
2349 2368 3.957383 TTTTTGTTCTCCGGCAAGC 57.043 47.368 0.00 0.00 0.00 4.01
2350 2369 1.107114 TTTTTGTTCTCCGGCAAGCA 58.893 45.000 0.00 0.00 0.00 3.91
2351 2370 0.383949 TTTTGTTCTCCGGCAAGCAC 59.616 50.000 0.00 0.00 0.00 4.40
2352 2371 1.452145 TTTGTTCTCCGGCAAGCACC 61.452 55.000 0.00 0.00 0.00 5.01
2353 2372 3.056328 GTTCTCCGGCAAGCACCC 61.056 66.667 0.00 0.00 0.00 4.61
2354 2373 3.565214 TTCTCCGGCAAGCACCCA 61.565 61.111 0.00 0.00 0.00 4.51
2355 2374 2.905996 TTCTCCGGCAAGCACCCAT 61.906 57.895 0.00 0.00 0.00 4.00
2356 2375 2.819984 TTCTCCGGCAAGCACCCATC 62.820 60.000 0.00 0.00 0.00 3.51
2357 2376 3.329889 TCCGGCAAGCACCCATCT 61.330 61.111 0.00 0.00 0.00 2.90
2358 2377 2.361610 CCGGCAAGCACCCATCTT 60.362 61.111 0.00 0.00 0.00 2.40
2359 2378 2.409870 CCGGCAAGCACCCATCTTC 61.410 63.158 0.00 0.00 0.00 2.87
2360 2379 2.409870 CGGCAAGCACCCATCTTCC 61.410 63.158 0.00 0.00 0.00 3.46
2361 2380 2.054453 GGCAAGCACCCATCTTCCC 61.054 63.158 0.00 0.00 0.00 3.97
2362 2381 2.054453 GCAAGCACCCATCTTCCCC 61.054 63.158 0.00 0.00 0.00 4.81
2363 2382 1.693640 CAAGCACCCATCTTCCCCT 59.306 57.895 0.00 0.00 0.00 4.79
2364 2383 0.040204 CAAGCACCCATCTTCCCCTT 59.960 55.000 0.00 0.00 0.00 3.95
2365 2384 0.332972 AAGCACCCATCTTCCCCTTC 59.667 55.000 0.00 0.00 0.00 3.46
2366 2385 1.452108 GCACCCATCTTCCCCTTCG 60.452 63.158 0.00 0.00 0.00 3.79
2367 2386 1.991230 CACCCATCTTCCCCTTCGT 59.009 57.895 0.00 0.00 0.00 3.85
2368 2387 0.328258 CACCCATCTTCCCCTTCGTT 59.672 55.000 0.00 0.00 0.00 3.85
2369 2388 0.328258 ACCCATCTTCCCCTTCGTTG 59.672 55.000 0.00 0.00 0.00 4.10
2370 2389 0.394352 CCCATCTTCCCCTTCGTTGG 60.394 60.000 0.00 0.00 0.00 3.77
2371 2390 1.032114 CCATCTTCCCCTTCGTTGGC 61.032 60.000 0.00 0.00 0.00 4.52
2372 2391 0.322456 CATCTTCCCCTTCGTTGGCA 60.322 55.000 0.00 0.00 0.00 4.92
2373 2392 0.035056 ATCTTCCCCTTCGTTGGCAG 60.035 55.000 0.00 0.00 0.00 4.85
2374 2393 1.125093 TCTTCCCCTTCGTTGGCAGA 61.125 55.000 0.00 0.00 0.00 4.26
2375 2394 0.674895 CTTCCCCTTCGTTGGCAGAG 60.675 60.000 0.00 0.00 0.00 3.35
2376 2395 1.415672 TTCCCCTTCGTTGGCAGAGT 61.416 55.000 0.00 0.00 0.00 3.24
2377 2396 1.376037 CCCCTTCGTTGGCAGAGTC 60.376 63.158 0.00 0.00 0.00 3.36
2378 2397 1.371183 CCCTTCGTTGGCAGAGTCA 59.629 57.895 0.00 0.00 0.00 3.41
2379 2398 0.036010 CCCTTCGTTGGCAGAGTCAT 60.036 55.000 0.00 0.00 0.00 3.06
2380 2399 1.363744 CCTTCGTTGGCAGAGTCATC 58.636 55.000 0.00 0.00 0.00 2.92
2381 2400 1.363744 CTTCGTTGGCAGAGTCATCC 58.636 55.000 0.00 0.00 0.00 3.51
2382 2401 0.036388 TTCGTTGGCAGAGTCATCCC 60.036 55.000 0.00 0.00 0.00 3.85
2383 2402 1.450312 CGTTGGCAGAGTCATCCCC 60.450 63.158 0.00 0.00 0.00 4.81
2384 2403 1.685224 GTTGGCAGAGTCATCCCCA 59.315 57.895 0.00 0.00 0.00 4.96
2385 2404 0.257039 GTTGGCAGAGTCATCCCCAT 59.743 55.000 0.00 0.00 30.10 4.00
2386 2405 1.002069 TTGGCAGAGTCATCCCCATT 58.998 50.000 0.00 0.00 30.10 3.16
2387 2406 0.256752 TGGCAGAGTCATCCCCATTG 59.743 55.000 0.00 0.00 0.00 2.82
2388 2407 0.466922 GGCAGAGTCATCCCCATTGG 60.467 60.000 0.00 0.00 0.00 3.16
2406 2425 4.424566 GCATGTTGCAGTGGCCGG 62.425 66.667 0.00 0.00 44.26 6.13
2407 2426 4.424566 CATGTTGCAGTGGCCGGC 62.425 66.667 21.18 21.18 40.13 6.13
2420 2439 3.625897 CCGGCCCATCCTCGCATA 61.626 66.667 0.00 0.00 0.00 3.14
2421 2440 2.357517 CGGCCCATCCTCGCATAC 60.358 66.667 0.00 0.00 0.00 2.39
2422 2441 2.032681 GGCCCATCCTCGCATACC 59.967 66.667 0.00 0.00 0.00 2.73
2423 2442 2.520536 GGCCCATCCTCGCATACCT 61.521 63.158 0.00 0.00 0.00 3.08
2424 2443 1.451936 GCCCATCCTCGCATACCTT 59.548 57.895 0.00 0.00 0.00 3.50
2425 2444 0.179018 GCCCATCCTCGCATACCTTT 60.179 55.000 0.00 0.00 0.00 3.11
2426 2445 1.884235 CCCATCCTCGCATACCTTTC 58.116 55.000 0.00 0.00 0.00 2.62
2427 2446 1.543429 CCCATCCTCGCATACCTTTCC 60.543 57.143 0.00 0.00 0.00 3.13
2428 2447 1.543429 CCATCCTCGCATACCTTTCCC 60.543 57.143 0.00 0.00 0.00 3.97
2429 2448 0.765510 ATCCTCGCATACCTTTCCCC 59.234 55.000 0.00 0.00 0.00 4.81
2430 2449 1.148498 CCTCGCATACCTTTCCCCC 59.852 63.158 0.00 0.00 0.00 5.40
2431 2450 1.632018 CCTCGCATACCTTTCCCCCA 61.632 60.000 0.00 0.00 0.00 4.96
2432 2451 0.179045 CTCGCATACCTTTCCCCCAG 60.179 60.000 0.00 0.00 0.00 4.45
2433 2452 1.152963 CGCATACCTTTCCCCCAGG 60.153 63.158 0.00 0.00 37.45 4.45
2434 2453 1.230212 GCATACCTTTCCCCCAGGG 59.770 63.158 0.00 0.00 46.11 4.45
2453 2472 3.608432 GACCAAAGAGGGCCATGC 58.392 61.111 6.18 0.00 40.85 4.06
2473 2492 1.781786 CGAGAGGGATTTCTGGGAGA 58.218 55.000 0.00 0.00 0.00 3.71
2474 2493 1.686052 CGAGAGGGATTTCTGGGAGAG 59.314 57.143 0.00 0.00 0.00 3.20
2475 2494 2.046292 GAGAGGGATTTCTGGGAGAGG 58.954 57.143 0.00 0.00 0.00 3.69
2476 2495 1.135960 GAGGGATTTCTGGGAGAGGG 58.864 60.000 0.00 0.00 0.00 4.30
2477 2496 0.990818 AGGGATTTCTGGGAGAGGGC 60.991 60.000 0.00 0.00 0.00 5.19
2478 2497 0.990818 GGGATTTCTGGGAGAGGGCT 60.991 60.000 0.00 0.00 0.00 5.19
2479 2498 0.922626 GGATTTCTGGGAGAGGGCTT 59.077 55.000 0.00 0.00 0.00 4.35
2480 2499 1.409381 GGATTTCTGGGAGAGGGCTTG 60.409 57.143 0.00 0.00 0.00 4.01
2481 2500 0.627986 ATTTCTGGGAGAGGGCTTGG 59.372 55.000 0.00 0.00 0.00 3.61
2482 2501 1.500783 TTTCTGGGAGAGGGCTTGGG 61.501 60.000 0.00 0.00 0.00 4.12
2483 2502 2.285668 CTGGGAGAGGGCTTGGGA 60.286 66.667 0.00 0.00 0.00 4.37
2484 2503 2.610859 TGGGAGAGGGCTTGGGAC 60.611 66.667 0.00 0.00 0.00 4.46
2485 2504 2.610859 GGGAGAGGGCTTGGGACA 60.611 66.667 0.00 0.00 0.00 4.02
2486 2505 2.003548 GGGAGAGGGCTTGGGACAT 61.004 63.158 0.00 0.00 39.30 3.06
2487 2506 1.529309 GGAGAGGGCTTGGGACATC 59.471 63.158 0.00 0.00 39.30 3.06
2488 2507 0.985490 GGAGAGGGCTTGGGACATCT 60.985 60.000 0.00 0.00 45.07 2.90
2489 2508 0.915364 GAGAGGGCTTGGGACATCTT 59.085 55.000 0.00 0.00 42.17 2.40
2490 2509 1.283321 GAGAGGGCTTGGGACATCTTT 59.717 52.381 0.00 0.00 42.17 2.52
2491 2510 1.005215 AGAGGGCTTGGGACATCTTTG 59.995 52.381 0.00 0.00 38.62 2.77
2492 2511 1.004745 GAGGGCTTGGGACATCTTTGA 59.995 52.381 0.00 0.00 39.30 2.69
2493 2512 1.005215 AGGGCTTGGGACATCTTTGAG 59.995 52.381 0.00 0.00 39.30 3.02
2494 2513 1.272147 GGGCTTGGGACATCTTTGAGT 60.272 52.381 0.00 0.00 39.30 3.41
2495 2514 1.815003 GGCTTGGGACATCTTTGAGTG 59.185 52.381 0.00 0.00 39.30 3.51
2496 2515 1.815003 GCTTGGGACATCTTTGAGTGG 59.185 52.381 0.00 0.00 39.30 4.00
2497 2516 2.440409 CTTGGGACATCTTTGAGTGGG 58.560 52.381 0.00 0.00 39.30 4.61
2498 2517 1.444933 TGGGACATCTTTGAGTGGGT 58.555 50.000 0.00 0.00 0.00 4.51
2499 2518 1.780309 TGGGACATCTTTGAGTGGGTT 59.220 47.619 0.00 0.00 0.00 4.11
2500 2519 2.162681 GGGACATCTTTGAGTGGGTTG 58.837 52.381 0.00 0.00 0.00 3.77
2501 2520 2.224769 GGGACATCTTTGAGTGGGTTGA 60.225 50.000 0.00 0.00 0.00 3.18
2502 2521 3.077359 GGACATCTTTGAGTGGGTTGAG 58.923 50.000 0.00 0.00 0.00 3.02
2503 2522 3.077359 GACATCTTTGAGTGGGTTGAGG 58.923 50.000 0.00 0.00 0.00 3.86
2504 2523 2.711009 ACATCTTTGAGTGGGTTGAGGA 59.289 45.455 0.00 0.00 0.00 3.71
2505 2524 3.244700 ACATCTTTGAGTGGGTTGAGGAG 60.245 47.826 0.00 0.00 0.00 3.69
2506 2525 2.689658 TCTTTGAGTGGGTTGAGGAGA 58.310 47.619 0.00 0.00 0.00 3.71
2507 2526 3.045634 TCTTTGAGTGGGTTGAGGAGAA 58.954 45.455 0.00 0.00 0.00 2.87
2508 2527 3.652869 TCTTTGAGTGGGTTGAGGAGAAT 59.347 43.478 0.00 0.00 0.00 2.40
2509 2528 3.423539 TTGAGTGGGTTGAGGAGAATG 57.576 47.619 0.00 0.00 0.00 2.67
2510 2529 1.003580 TGAGTGGGTTGAGGAGAATGC 59.996 52.381 0.00 0.00 0.00 3.56
2511 2530 1.003580 GAGTGGGTTGAGGAGAATGCA 59.996 52.381 0.00 0.00 0.00 3.96
2512 2531 1.168714 GTGGGTTGAGGAGAATGCAC 58.831 55.000 0.00 0.00 0.00 4.57
2513 2532 1.067295 TGGGTTGAGGAGAATGCACT 58.933 50.000 0.00 0.00 0.00 4.40
2514 2533 1.425066 TGGGTTGAGGAGAATGCACTT 59.575 47.619 0.00 0.00 0.00 3.16
2515 2534 2.158475 TGGGTTGAGGAGAATGCACTTT 60.158 45.455 0.00 0.00 0.00 2.66
2516 2535 2.229784 GGGTTGAGGAGAATGCACTTTG 59.770 50.000 0.00 0.00 0.00 2.77
2517 2536 2.887152 GGTTGAGGAGAATGCACTTTGT 59.113 45.455 0.00 0.00 0.00 2.83
2518 2537 4.072131 GGTTGAGGAGAATGCACTTTGTA 58.928 43.478 0.00 0.00 0.00 2.41
2519 2538 4.154918 GGTTGAGGAGAATGCACTTTGTAG 59.845 45.833 0.00 0.00 0.00 2.74
2520 2539 4.623932 TGAGGAGAATGCACTTTGTAGT 57.376 40.909 0.00 0.00 34.00 2.73
2521 2540 5.738619 TGAGGAGAATGCACTTTGTAGTA 57.261 39.130 0.00 0.00 31.96 1.82
2522 2541 6.109156 TGAGGAGAATGCACTTTGTAGTAA 57.891 37.500 0.00 0.00 31.96 2.24
2523 2542 6.530120 TGAGGAGAATGCACTTTGTAGTAAA 58.470 36.000 0.00 0.00 31.96 2.01
2524 2543 6.650807 TGAGGAGAATGCACTTTGTAGTAAAG 59.349 38.462 0.00 0.00 31.96 1.85
2525 2544 6.769512 AGGAGAATGCACTTTGTAGTAAAGA 58.230 36.000 6.42 0.00 31.96 2.52
2526 2545 6.651225 AGGAGAATGCACTTTGTAGTAAAGAC 59.349 38.462 6.42 0.00 31.96 3.01
2527 2546 6.651225 GGAGAATGCACTTTGTAGTAAAGACT 59.349 38.462 6.42 0.00 39.92 3.24
2528 2547 7.817962 GGAGAATGCACTTTGTAGTAAAGACTA 59.182 37.037 6.42 0.00 37.10 2.59
2529 2548 9.204570 GAGAATGCACTTTGTAGTAAAGACTAA 57.795 33.333 6.42 0.00 39.91 2.24
2530 2549 9.555727 AGAATGCACTTTGTAGTAAAGACTAAA 57.444 29.630 6.42 0.00 39.91 1.85
2532 2551 9.946165 AATGCACTTTGTAGTAAAGACTAAAAC 57.054 29.630 6.42 0.00 39.91 2.43
2533 2552 8.495361 TGCACTTTGTAGTAAAGACTAAAACA 57.505 30.769 6.42 0.00 39.91 2.83
2534 2553 9.116067 TGCACTTTGTAGTAAAGACTAAAACAT 57.884 29.630 6.42 0.00 39.91 2.71
2535 2554 9.595357 GCACTTTGTAGTAAAGACTAAAACATC 57.405 33.333 6.42 0.00 39.91 3.06
2537 2556 8.985805 ACTTTGTAGTAAAGACTAAAACATCCG 58.014 33.333 6.42 0.00 39.91 4.18
2538 2557 6.956299 TGTAGTAAAGACTAAAACATCCGC 57.044 37.500 0.00 0.00 39.91 5.54
2539 2558 5.870978 TGTAGTAAAGACTAAAACATCCGCC 59.129 40.000 0.00 0.00 39.91 6.13
2540 2559 4.901868 AGTAAAGACTAAAACATCCGCCA 58.098 39.130 0.00 0.00 32.65 5.69
2541 2560 4.935808 AGTAAAGACTAAAACATCCGCCAG 59.064 41.667 0.00 0.00 32.65 4.85
2542 2561 2.403252 AGACTAAAACATCCGCCAGG 57.597 50.000 0.00 0.00 39.46 4.45
2543 2562 0.733150 GACTAAAACATCCGCCAGGC 59.267 55.000 0.00 0.00 37.47 4.85
2544 2563 0.037590 ACTAAAACATCCGCCAGGCA 59.962 50.000 13.30 0.00 37.47 4.75
2545 2564 0.734889 CTAAAACATCCGCCAGGCAG 59.265 55.000 13.30 0.00 37.47 4.85
2546 2565 1.312371 TAAAACATCCGCCAGGCAGC 61.312 55.000 13.30 0.00 37.47 5.25
2547 2566 3.866379 AAACATCCGCCAGGCAGCA 62.866 57.895 13.30 0.00 37.47 4.41
2548 2567 3.650298 AACATCCGCCAGGCAGCAT 62.650 57.895 13.30 0.00 37.47 3.79
2549 2568 2.111669 CATCCGCCAGGCAGCATA 59.888 61.111 13.30 0.00 37.47 3.14
2550 2569 1.964891 CATCCGCCAGGCAGCATAG 60.965 63.158 13.30 0.00 37.47 2.23
2551 2570 3.839353 ATCCGCCAGGCAGCATAGC 62.839 63.158 13.30 0.00 37.47 2.97
2560 2579 1.373059 GCAGCATAGCCTCCCTACC 59.627 63.158 0.00 0.00 0.00 3.18
2561 2580 2.062070 CAGCATAGCCTCCCTACCC 58.938 63.158 0.00 0.00 0.00 3.69
2562 2581 1.152008 AGCATAGCCTCCCTACCCC 60.152 63.158 0.00 0.00 0.00 4.95
2563 2582 1.461461 GCATAGCCTCCCTACCCCA 60.461 63.158 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.562696 CGTCTGCAAATAACAGGTTTGTGAT 60.563 40.000 0.00 0.00 38.49 3.06
68 69 4.573607 TCTCATTTGCTCTCATCGGAATTG 59.426 41.667 0.00 0.00 0.00 2.32
74 75 4.785055 CGTTTTTCTCATTTGCTCTCATCG 59.215 41.667 0.00 0.00 0.00 3.84
91 92 6.978080 ACAACTTTCAGTGATATTGCGTTTTT 59.022 30.769 10.06 0.00 0.00 1.94
113 114 5.373222 CCCCATAATACGAATCCAGAACAA 58.627 41.667 0.00 0.00 0.00 2.83
131 132 4.101448 GCTGACCTGACGCCCCAT 62.101 66.667 0.00 0.00 0.00 4.00
157 158 8.650490 ACTAAAGAAAATGTTGGATTTGTCCAT 58.350 29.630 0.00 0.00 39.86 3.41
267 269 2.040544 CCCCAACGTAGCTGGCAAG 61.041 63.158 0.00 0.00 43.55 4.01
473 475 2.398588 CCCACCAGAACCTAGCTATCA 58.601 52.381 0.00 0.00 0.00 2.15
523 525 1.068333 CATCTTCCACCAAGCAAACCG 60.068 52.381 0.00 0.00 31.26 4.44
719 724 6.935741 TTATGCTTTGCCAAGTATACGAAT 57.064 33.333 7.68 0.00 37.33 3.34
744 749 0.042581 TCAGGGTATCCACTCCTGCA 59.957 55.000 0.00 0.00 45.58 4.41
782 787 2.125673 GTCGTCCATCACCCACCG 60.126 66.667 0.00 0.00 0.00 4.94
1132 1137 5.247110 TCAGAGACCATATAGAATCCCAAGC 59.753 44.000 0.00 0.00 0.00 4.01
1146 1151 1.905215 CCTGGACAACTCAGAGACCAT 59.095 52.381 3.79 0.00 34.36 3.55
1202 1207 0.460284 CGCTCGGCAAGGTATTGAGT 60.460 55.000 0.00 0.00 38.83 3.41
1291 1296 2.425592 CACGAACAGGAGGTGCCA 59.574 61.111 0.00 0.00 40.02 4.92
1315 1320 3.390175 TTTCCAAACCTCCACTTCCAA 57.610 42.857 0.00 0.00 0.00 3.53
1411 1422 8.592809 GTGGATATAGTTCTCAGGAAGATTCAT 58.407 37.037 0.00 0.00 32.82 2.57
1561 1572 3.430862 GTTCGCCGCCAATGCTCA 61.431 61.111 0.00 0.00 34.43 4.26
1680 1691 3.495100 CCACAGAGCCTTTAAGTGTGTCT 60.495 47.826 10.91 0.00 37.42 3.41
1883 1894 4.302067 TGAAGATGAATAGCCCTCCTTCT 58.698 43.478 0.00 0.00 32.27 2.85
2140 2159 2.594592 AAGTGGAGGCGGTTGTGC 60.595 61.111 0.00 0.00 0.00 4.57
2141 2160 1.071471 AGAAGTGGAGGCGGTTGTG 59.929 57.895 0.00 0.00 0.00 3.33
2142 2161 1.071471 CAGAAGTGGAGGCGGTTGT 59.929 57.895 0.00 0.00 0.00 3.32
2143 2162 2.328099 GCAGAAGTGGAGGCGGTTG 61.328 63.158 0.00 0.00 0.00 3.77
2144 2163 2.032681 GCAGAAGTGGAGGCGGTT 59.967 61.111 0.00 0.00 0.00 4.44
2145 2164 2.738213 CTTGCAGAAGTGGAGGCGGT 62.738 60.000 0.00 0.00 0.00 5.68
2146 2165 2.032528 TTGCAGAAGTGGAGGCGG 59.967 61.111 0.00 0.00 0.00 6.13
2147 2166 1.004560 TCTTGCAGAAGTGGAGGCG 60.005 57.895 0.00 0.00 0.00 5.52
2148 2167 0.322975 TCTCTTGCAGAAGTGGAGGC 59.677 55.000 0.00 0.00 0.00 4.70
2149 2168 1.345741 TGTCTCTTGCAGAAGTGGAGG 59.654 52.381 0.00 0.00 30.72 4.30
2150 2169 2.827800 TGTCTCTTGCAGAAGTGGAG 57.172 50.000 0.00 0.00 30.72 3.86
2151 2170 3.470709 CTTTGTCTCTTGCAGAAGTGGA 58.529 45.455 0.00 0.00 30.72 4.02
2152 2171 2.031333 GCTTTGTCTCTTGCAGAAGTGG 60.031 50.000 0.00 0.00 30.72 4.00
2153 2172 2.031333 GGCTTTGTCTCTTGCAGAAGTG 60.031 50.000 0.00 0.00 30.72 3.16
2154 2173 2.225467 GGCTTTGTCTCTTGCAGAAGT 58.775 47.619 0.00 0.00 30.72 3.01
2155 2174 2.031333 GTGGCTTTGTCTCTTGCAGAAG 60.031 50.000 0.00 0.00 30.72 2.85
2156 2175 1.949525 GTGGCTTTGTCTCTTGCAGAA 59.050 47.619 0.00 0.00 30.72 3.02
2157 2176 1.141657 AGTGGCTTTGTCTCTTGCAGA 59.858 47.619 0.00 0.00 0.00 4.26
2158 2177 1.602311 AGTGGCTTTGTCTCTTGCAG 58.398 50.000 0.00 0.00 0.00 4.41
2159 2178 2.057137 AAGTGGCTTTGTCTCTTGCA 57.943 45.000 0.00 0.00 0.00 4.08
2160 2179 3.375642 GAAAAGTGGCTTTGTCTCTTGC 58.624 45.455 0.00 0.00 33.64 4.01
2161 2180 3.381272 TGGAAAAGTGGCTTTGTCTCTTG 59.619 43.478 0.00 0.00 33.64 3.02
2162 2181 3.381590 GTGGAAAAGTGGCTTTGTCTCTT 59.618 43.478 0.00 0.00 33.64 2.85
2163 2182 2.952310 GTGGAAAAGTGGCTTTGTCTCT 59.048 45.455 0.00 0.00 33.64 3.10
2164 2183 2.034685 GGTGGAAAAGTGGCTTTGTCTC 59.965 50.000 0.00 0.00 33.64 3.36
2165 2184 2.031870 GGTGGAAAAGTGGCTTTGTCT 58.968 47.619 0.00 0.00 33.64 3.41
2166 2185 1.269051 CGGTGGAAAAGTGGCTTTGTC 60.269 52.381 0.00 0.00 33.64 3.18
2167 2186 0.744281 CGGTGGAAAAGTGGCTTTGT 59.256 50.000 0.00 0.00 33.64 2.83
2168 2187 0.031994 CCGGTGGAAAAGTGGCTTTG 59.968 55.000 0.00 0.00 33.64 2.77
2169 2188 1.112916 CCCGGTGGAAAAGTGGCTTT 61.113 55.000 0.00 0.00 34.94 3.51
2170 2189 1.530655 CCCGGTGGAAAAGTGGCTT 60.531 57.895 0.00 0.00 0.00 4.35
2171 2190 2.115266 CCCGGTGGAAAAGTGGCT 59.885 61.111 0.00 0.00 0.00 4.75
2172 2191 2.114411 TCCCGGTGGAAAAGTGGC 59.886 61.111 0.00 0.00 37.86 5.01
2180 2199 3.068881 CAAGCTCTTCCCGGTGGA 58.931 61.111 0.00 0.00 39.54 4.02
2181 2200 2.747855 GCAAGCTCTTCCCGGTGG 60.748 66.667 0.00 0.00 0.00 4.61
2182 2201 0.962356 AATGCAAGCTCTTCCCGGTG 60.962 55.000 0.00 0.00 0.00 4.94
2183 2202 0.618458 TAATGCAAGCTCTTCCCGGT 59.382 50.000 0.00 0.00 0.00 5.28
2184 2203 1.750193 TTAATGCAAGCTCTTCCCGG 58.250 50.000 0.00 0.00 0.00 5.73
2185 2204 2.033801 CCATTAATGCAAGCTCTTCCCG 59.966 50.000 10.11 0.00 0.00 5.14
2186 2205 3.026694 ACCATTAATGCAAGCTCTTCCC 58.973 45.455 10.11 0.00 0.00 3.97
2187 2206 4.082026 ACAACCATTAATGCAAGCTCTTCC 60.082 41.667 10.11 0.00 0.00 3.46
2188 2207 5.064441 ACAACCATTAATGCAAGCTCTTC 57.936 39.130 10.11 0.00 0.00 2.87
2189 2208 5.232463 CAACAACCATTAATGCAAGCTCTT 58.768 37.500 10.11 0.00 0.00 2.85
2190 2209 4.813027 CAACAACCATTAATGCAAGCTCT 58.187 39.130 10.11 0.00 0.00 4.09
2191 2210 3.368843 GCAACAACCATTAATGCAAGCTC 59.631 43.478 10.11 0.00 37.00 4.09
2192 2211 3.328505 GCAACAACCATTAATGCAAGCT 58.671 40.909 10.11 0.00 37.00 3.74
2193 2212 2.416202 GGCAACAACCATTAATGCAAGC 59.584 45.455 10.11 7.31 38.73 4.01
2194 2213 2.667481 CGGCAACAACCATTAATGCAAG 59.333 45.455 10.11 4.12 38.73 4.01
2195 2214 2.681706 CGGCAACAACCATTAATGCAA 58.318 42.857 10.11 0.00 38.73 4.08
2196 2215 1.671261 GCGGCAACAACCATTAATGCA 60.671 47.619 10.11 0.00 38.73 3.96
2197 2216 0.998669 GCGGCAACAACCATTAATGC 59.001 50.000 10.11 0.00 36.31 3.56
2198 2217 2.360553 TGCGGCAACAACCATTAATG 57.639 45.000 8.58 8.58 0.00 1.90
2199 2218 3.608316 AATGCGGCAACAACCATTAAT 57.392 38.095 6.82 0.00 30.58 1.40
2200 2219 3.243873 TGAAATGCGGCAACAACCATTAA 60.244 39.130 6.82 0.00 31.65 1.40
2201 2220 2.297315 TGAAATGCGGCAACAACCATTA 59.703 40.909 6.82 0.00 31.65 1.90
2202 2221 1.069823 TGAAATGCGGCAACAACCATT 59.930 42.857 6.82 0.00 32.77 3.16
2203 2222 0.678395 TGAAATGCGGCAACAACCAT 59.322 45.000 6.82 0.00 0.00 3.55
2204 2223 0.678395 ATGAAATGCGGCAACAACCA 59.322 45.000 6.82 1.55 0.00 3.67
2205 2224 1.070038 CATGAAATGCGGCAACAACC 58.930 50.000 6.82 0.00 37.62 3.77
2217 2236 6.769822 GGTGATGAGGTGAAGATACATGAAAT 59.230 38.462 0.00 0.00 0.00 2.17
2218 2237 6.070021 AGGTGATGAGGTGAAGATACATGAAA 60.070 38.462 0.00 0.00 0.00 2.69
2219 2238 5.426509 AGGTGATGAGGTGAAGATACATGAA 59.573 40.000 0.00 0.00 0.00 2.57
2220 2239 4.964897 AGGTGATGAGGTGAAGATACATGA 59.035 41.667 0.00 0.00 0.00 3.07
2221 2240 5.055144 CAGGTGATGAGGTGAAGATACATG 58.945 45.833 0.00 0.00 0.00 3.21
2222 2241 4.102210 CCAGGTGATGAGGTGAAGATACAT 59.898 45.833 0.00 0.00 0.00 2.29
2223 2242 3.452264 CCAGGTGATGAGGTGAAGATACA 59.548 47.826 0.00 0.00 0.00 2.29
2224 2243 3.742640 GCCAGGTGATGAGGTGAAGATAC 60.743 52.174 0.00 0.00 0.00 2.24
2225 2244 2.435805 GCCAGGTGATGAGGTGAAGATA 59.564 50.000 0.00 0.00 0.00 1.98
2226 2245 1.211457 GCCAGGTGATGAGGTGAAGAT 59.789 52.381 0.00 0.00 0.00 2.40
2227 2246 0.615331 GCCAGGTGATGAGGTGAAGA 59.385 55.000 0.00 0.00 0.00 2.87
2228 2247 0.742281 CGCCAGGTGATGAGGTGAAG 60.742 60.000 0.00 0.00 34.93 3.02
2229 2248 1.296392 CGCCAGGTGATGAGGTGAA 59.704 57.895 0.00 0.00 34.93 3.18
2230 2249 2.981302 CGCCAGGTGATGAGGTGA 59.019 61.111 0.00 0.00 34.93 4.02
2231 2250 2.821366 GCGCCAGGTGATGAGGTG 60.821 66.667 3.39 0.00 36.05 4.00
2232 2251 4.457496 CGCGCCAGGTGATGAGGT 62.457 66.667 3.39 0.00 0.00 3.85
2233 2252 3.451556 ATCGCGCCAGGTGATGAGG 62.452 63.158 3.39 0.00 44.04 3.86
2234 2253 1.953138 GATCGCGCCAGGTGATGAG 60.953 63.158 3.39 0.00 45.65 2.90
2235 2254 2.106938 GATCGCGCCAGGTGATGA 59.893 61.111 3.39 0.47 45.65 2.92
2236 2255 2.969238 GGATCGCGCCAGGTGATG 60.969 66.667 3.39 0.00 45.65 3.07
2238 2257 2.535485 AATTGGATCGCGCCAGGTGA 62.535 55.000 3.39 0.00 39.52 4.02
2239 2258 2.051804 GAATTGGATCGCGCCAGGTG 62.052 60.000 0.00 0.00 39.52 4.00
2240 2259 1.819632 GAATTGGATCGCGCCAGGT 60.820 57.895 0.00 0.00 39.52 4.00
2241 2260 2.546494 GGAATTGGATCGCGCCAGG 61.546 63.158 0.00 0.00 39.52 4.45
2242 2261 1.819208 TGGAATTGGATCGCGCCAG 60.819 57.895 0.00 0.00 39.52 4.85
2243 2262 2.112198 GTGGAATTGGATCGCGCCA 61.112 57.895 0.00 0.00 35.78 5.69
2244 2263 2.715624 GTGGAATTGGATCGCGCC 59.284 61.111 0.00 0.00 0.00 6.53
2245 2264 2.715624 GGTGGAATTGGATCGCGC 59.284 61.111 0.00 0.00 0.00 6.86
2246 2265 2.186826 GGGGTGGAATTGGATCGCG 61.187 63.158 0.00 0.00 0.00 5.87
2247 2266 1.103398 CAGGGGTGGAATTGGATCGC 61.103 60.000 0.00 0.00 0.00 4.58
2248 2267 0.255890 ACAGGGGTGGAATTGGATCG 59.744 55.000 0.00 0.00 0.00 3.69
2249 2268 2.532250 AACAGGGGTGGAATTGGATC 57.468 50.000 0.00 0.00 0.00 3.36
2250 2269 2.559705 GGAAACAGGGGTGGAATTGGAT 60.560 50.000 0.00 0.00 0.00 3.41
2251 2270 1.203125 GGAAACAGGGGTGGAATTGGA 60.203 52.381 0.00 0.00 0.00 3.53
2252 2271 1.266178 GGAAACAGGGGTGGAATTGG 58.734 55.000 0.00 0.00 0.00 3.16
2253 2272 1.203174 AGGGAAACAGGGGTGGAATTG 60.203 52.381 0.00 0.00 0.00 2.32
2254 2273 1.077169 GAGGGAAACAGGGGTGGAATT 59.923 52.381 0.00 0.00 0.00 2.17
2255 2274 0.704664 GAGGGAAACAGGGGTGGAAT 59.295 55.000 0.00 0.00 0.00 3.01
2256 2275 0.402861 AGAGGGAAACAGGGGTGGAA 60.403 55.000 0.00 0.00 0.00 3.53
2257 2276 1.133809 CAGAGGGAAACAGGGGTGGA 61.134 60.000 0.00 0.00 0.00 4.02
2258 2277 1.380302 CAGAGGGAAACAGGGGTGG 59.620 63.158 0.00 0.00 0.00 4.61
2259 2278 1.133809 TCCAGAGGGAAACAGGGGTG 61.134 60.000 0.00 0.00 41.32 4.61
2260 2279 0.842467 CTCCAGAGGGAAACAGGGGT 60.842 60.000 0.00 0.00 44.38 4.95
2261 2280 1.994463 CTCCAGAGGGAAACAGGGG 59.006 63.158 0.00 0.00 44.38 4.79
2262 2281 1.301293 GCTCCAGAGGGAAACAGGG 59.699 63.158 0.00 0.00 44.38 4.45
2263 2282 1.078848 CGCTCCAGAGGGAAACAGG 60.079 63.158 5.85 0.00 44.38 4.00
2264 2283 1.743252 GCGCTCCAGAGGGAAACAG 60.743 63.158 15.23 0.00 44.38 3.16
2265 2284 2.347490 GCGCTCCAGAGGGAAACA 59.653 61.111 15.23 0.00 44.38 2.83
2266 2285 2.035442 GTGCGCTCCAGAGGGAAAC 61.035 63.158 15.23 8.62 44.38 2.78
2267 2286 2.172483 GAGTGCGCTCCAGAGGGAAA 62.172 60.000 16.69 0.28 44.38 3.13
2268 2287 2.604686 AGTGCGCTCCAGAGGGAA 60.605 61.111 15.23 1.87 44.38 3.97
2269 2288 3.071206 GAGTGCGCTCCAGAGGGA 61.071 66.667 16.69 0.00 43.22 4.20
2270 2289 4.504916 CGAGTGCGCTCCAGAGGG 62.505 72.222 21.21 7.33 43.38 4.30
2271 2290 2.771763 AAACGAGTGCGCTCCAGAGG 62.772 60.000 21.21 9.43 42.48 3.69
2272 2291 0.946221 AAAACGAGTGCGCTCCAGAG 60.946 55.000 21.21 9.80 42.48 3.35
2273 2292 0.944311 GAAAACGAGTGCGCTCCAGA 60.944 55.000 21.21 0.00 42.48 3.86
2274 2293 1.221466 TGAAAACGAGTGCGCTCCAG 61.221 55.000 21.21 10.88 42.48 3.86
2275 2294 1.221466 CTGAAAACGAGTGCGCTCCA 61.221 55.000 21.21 11.71 42.48 3.86
2276 2295 1.493311 CTGAAAACGAGTGCGCTCC 59.507 57.895 21.21 7.56 42.48 4.70
2277 2296 1.222115 ACCTGAAAACGAGTGCGCTC 61.222 55.000 17.53 17.53 42.48 5.03
2278 2297 1.227556 ACCTGAAAACGAGTGCGCT 60.228 52.632 9.73 0.00 42.48 5.92
2279 2298 1.082756 CACCTGAAAACGAGTGCGC 60.083 57.895 0.00 0.00 42.48 6.09
2280 2299 1.493772 TACACCTGAAAACGAGTGCG 58.506 50.000 0.00 0.00 44.79 5.34
2281 2300 5.379827 GTTTATACACCTGAAAACGAGTGC 58.620 41.667 0.00 0.00 33.46 4.40
2282 2301 5.389098 CGGTTTATACACCTGAAAACGAGTG 60.389 44.000 6.50 0.00 44.07 3.51
2283 2302 4.687483 CGGTTTATACACCTGAAAACGAGT 59.313 41.667 6.50 0.00 44.07 4.18
2284 2303 4.925054 TCGGTTTATACACCTGAAAACGAG 59.075 41.667 6.50 0.00 44.74 4.18
2285 2304 4.685628 GTCGGTTTATACACCTGAAAACGA 59.314 41.667 6.50 2.84 46.70 3.85
2286 2305 4.143052 GGTCGGTTTATACACCTGAAAACG 60.143 45.833 6.50 0.00 43.01 3.60
2287 2306 4.154737 GGGTCGGTTTATACACCTGAAAAC 59.845 45.833 6.50 0.00 34.22 2.43
2288 2307 4.202440 TGGGTCGGTTTATACACCTGAAAA 60.202 41.667 6.50 0.00 34.22 2.29
2289 2308 3.327172 TGGGTCGGTTTATACACCTGAAA 59.673 43.478 6.50 0.00 34.22 2.69
2290 2309 2.905085 TGGGTCGGTTTATACACCTGAA 59.095 45.455 6.50 0.00 34.22 3.02
2291 2310 2.234414 GTGGGTCGGTTTATACACCTGA 59.766 50.000 6.50 3.11 34.22 3.86
2292 2311 2.235402 AGTGGGTCGGTTTATACACCTG 59.765 50.000 6.50 0.90 34.22 4.00
2293 2312 2.543635 AGTGGGTCGGTTTATACACCT 58.456 47.619 6.50 0.00 34.22 4.00
2294 2313 3.264947 GAAGTGGGTCGGTTTATACACC 58.735 50.000 0.00 0.00 0.00 4.16
2295 2314 3.264947 GGAAGTGGGTCGGTTTATACAC 58.735 50.000 0.00 0.00 0.00 2.90
2296 2315 2.094078 CGGAAGTGGGTCGGTTTATACA 60.094 50.000 0.00 0.00 0.00 2.29
2297 2316 2.543641 CGGAAGTGGGTCGGTTTATAC 58.456 52.381 0.00 0.00 0.00 1.47
2298 2317 1.134729 GCGGAAGTGGGTCGGTTTATA 60.135 52.381 0.00 0.00 0.00 0.98
2299 2318 0.392060 GCGGAAGTGGGTCGGTTTAT 60.392 55.000 0.00 0.00 0.00 1.40
2300 2319 1.004679 GCGGAAGTGGGTCGGTTTA 60.005 57.895 0.00 0.00 0.00 2.01
2301 2320 2.281276 GCGGAAGTGGGTCGGTTT 60.281 61.111 0.00 0.00 0.00 3.27
2302 2321 3.236003 GAGCGGAAGTGGGTCGGTT 62.236 63.158 0.00 0.00 34.71 4.44
2303 2322 3.692406 GAGCGGAAGTGGGTCGGT 61.692 66.667 0.00 0.00 37.33 4.69
2304 2323 3.691342 TGAGCGGAAGTGGGTCGG 61.691 66.667 0.00 0.00 34.75 4.79
2305 2324 2.432628 GTGAGCGGAAGTGGGTCG 60.433 66.667 0.00 0.00 34.75 4.79
2306 2325 2.432628 CGTGAGCGGAAGTGGGTC 60.433 66.667 0.00 0.00 0.00 4.46
2316 2335 2.317230 AAAAAGGTGTCCGTGAGCG 58.683 52.632 0.00 0.00 37.95 5.03
2331 2350 1.107114 TGCTTGCCGGAGAACAAAAA 58.893 45.000 5.05 0.00 0.00 1.94
2332 2351 0.383949 GTGCTTGCCGGAGAACAAAA 59.616 50.000 5.05 0.00 0.00 2.44
2333 2352 1.452145 GGTGCTTGCCGGAGAACAAA 61.452 55.000 5.05 0.00 0.00 2.83
2334 2353 1.896660 GGTGCTTGCCGGAGAACAA 60.897 57.895 5.05 0.00 0.00 2.83
2335 2354 2.281484 GGTGCTTGCCGGAGAACA 60.281 61.111 5.05 0.00 0.00 3.18
2336 2355 3.056328 GGGTGCTTGCCGGAGAAC 61.056 66.667 5.05 0.00 0.00 3.01
2337 2356 2.819984 GATGGGTGCTTGCCGGAGAA 62.820 60.000 5.05 0.00 0.00 2.87
2338 2357 3.329542 GATGGGTGCTTGCCGGAGA 62.330 63.158 5.05 0.00 0.00 3.71
2339 2358 2.825836 GATGGGTGCTTGCCGGAG 60.826 66.667 5.05 0.00 0.00 4.63
2340 2359 2.819984 GAAGATGGGTGCTTGCCGGA 62.820 60.000 5.05 0.00 0.00 5.14
2341 2360 2.361610 AAGATGGGTGCTTGCCGG 60.362 61.111 0.00 0.00 0.00 6.13
2342 2361 2.409870 GGAAGATGGGTGCTTGCCG 61.410 63.158 0.00 0.00 0.00 5.69
2343 2362 2.054453 GGGAAGATGGGTGCTTGCC 61.054 63.158 0.00 0.00 44.69 4.52
2344 2363 2.054453 GGGGAAGATGGGTGCTTGC 61.054 63.158 0.00 0.00 33.55 4.01
2345 2364 0.040204 AAGGGGAAGATGGGTGCTTG 59.960 55.000 0.00 0.00 0.00 4.01
2346 2365 0.332972 GAAGGGGAAGATGGGTGCTT 59.667 55.000 0.00 0.00 0.00 3.91
2347 2366 1.915078 CGAAGGGGAAGATGGGTGCT 61.915 60.000 0.00 0.00 0.00 4.40
2348 2367 1.452108 CGAAGGGGAAGATGGGTGC 60.452 63.158 0.00 0.00 0.00 5.01
2349 2368 0.328258 AACGAAGGGGAAGATGGGTG 59.672 55.000 0.00 0.00 0.00 4.61
2350 2369 0.328258 CAACGAAGGGGAAGATGGGT 59.672 55.000 0.00 0.00 0.00 4.51
2351 2370 0.394352 CCAACGAAGGGGAAGATGGG 60.394 60.000 0.00 0.00 0.00 4.00
2352 2371 1.032114 GCCAACGAAGGGGAAGATGG 61.032 60.000 0.00 0.00 0.00 3.51
2353 2372 0.322456 TGCCAACGAAGGGGAAGATG 60.322 55.000 0.00 0.00 0.00 2.90
2354 2373 0.035056 CTGCCAACGAAGGGGAAGAT 60.035 55.000 0.00 0.00 34.11 2.40
2355 2374 1.125093 TCTGCCAACGAAGGGGAAGA 61.125 55.000 0.00 0.00 38.24 2.87
2356 2375 0.674895 CTCTGCCAACGAAGGGGAAG 60.675 60.000 0.00 0.00 33.60 3.46
2357 2376 1.374947 CTCTGCCAACGAAGGGGAA 59.625 57.895 0.00 0.00 0.00 3.97
2358 2377 1.827399 GACTCTGCCAACGAAGGGGA 61.827 60.000 0.00 0.00 0.00 4.81
2359 2378 1.376037 GACTCTGCCAACGAAGGGG 60.376 63.158 0.00 0.00 0.00 4.79
2360 2379 0.036010 ATGACTCTGCCAACGAAGGG 60.036 55.000 0.00 0.00 0.00 3.95
2361 2380 1.363744 GATGACTCTGCCAACGAAGG 58.636 55.000 0.00 0.00 0.00 3.46
2362 2381 1.363744 GGATGACTCTGCCAACGAAG 58.636 55.000 0.00 0.00 0.00 3.79
2363 2382 0.036388 GGGATGACTCTGCCAACGAA 60.036 55.000 0.00 0.00 0.00 3.85
2364 2383 1.596934 GGGATGACTCTGCCAACGA 59.403 57.895 0.00 0.00 0.00 3.85
2365 2384 1.450312 GGGGATGACTCTGCCAACG 60.450 63.158 0.00 0.00 0.00 4.10
2366 2385 0.257039 ATGGGGATGACTCTGCCAAC 59.743 55.000 0.00 0.00 0.00 3.77
2367 2386 1.002069 AATGGGGATGACTCTGCCAA 58.998 50.000 0.00 0.00 0.00 4.52
2368 2387 0.256752 CAATGGGGATGACTCTGCCA 59.743 55.000 0.00 0.00 0.00 4.92
2369 2388 0.466922 CCAATGGGGATGACTCTGCC 60.467 60.000 0.00 0.00 40.01 4.85
2370 2389 3.106738 CCAATGGGGATGACTCTGC 57.893 57.895 0.00 0.00 40.01 4.26
2381 2400 1.219664 CTGCAACATGCCCAATGGG 59.780 57.895 15.45 15.45 44.23 4.00
2382 2401 0.390603 CACTGCAACATGCCCAATGG 60.391 55.000 0.00 0.00 44.23 3.16
2383 2402 0.390603 CCACTGCAACATGCCCAATG 60.391 55.000 0.00 0.00 44.23 2.82
2384 2403 1.976898 CCACTGCAACATGCCCAAT 59.023 52.632 0.00 0.00 44.23 3.16
2385 2404 2.870119 GCCACTGCAACATGCCCAA 61.870 57.895 0.00 0.00 44.23 4.12
2386 2405 3.304721 GCCACTGCAACATGCCCA 61.305 61.111 0.00 0.00 44.23 5.36
2387 2406 4.073200 GGCCACTGCAACATGCCC 62.073 66.667 0.00 0.00 44.23 5.36
2388 2407 4.424566 CGGCCACTGCAACATGCC 62.425 66.667 2.24 6.22 44.23 4.40
2389 2408 4.424566 CCGGCCACTGCAACATGC 62.425 66.667 2.24 0.00 45.29 4.06
2390 2409 4.424566 GCCGGCCACTGCAACATG 62.425 66.667 18.11 0.00 40.13 3.21
2403 2422 3.625897 TATGCGAGGATGGGCCGG 61.626 66.667 0.00 0.00 43.43 6.13
2404 2423 2.357517 GTATGCGAGGATGGGCCG 60.358 66.667 0.00 0.00 43.43 6.13
2405 2424 2.032681 GGTATGCGAGGATGGGCC 59.967 66.667 0.00 0.00 0.00 5.80
2406 2425 0.179018 AAAGGTATGCGAGGATGGGC 60.179 55.000 0.00 0.00 0.00 5.36
2407 2426 1.543429 GGAAAGGTATGCGAGGATGGG 60.543 57.143 0.00 0.00 0.00 4.00
2408 2427 1.543429 GGGAAAGGTATGCGAGGATGG 60.543 57.143 0.00 0.00 0.00 3.51
2409 2428 1.543429 GGGGAAAGGTATGCGAGGATG 60.543 57.143 0.00 0.00 0.00 3.51
2410 2429 0.765510 GGGGAAAGGTATGCGAGGAT 59.234 55.000 0.00 0.00 0.00 3.24
2411 2430 1.342672 GGGGGAAAGGTATGCGAGGA 61.343 60.000 0.00 0.00 0.00 3.71
2412 2431 1.148498 GGGGGAAAGGTATGCGAGG 59.852 63.158 0.00 0.00 0.00 4.63
2413 2432 0.179045 CTGGGGGAAAGGTATGCGAG 60.179 60.000 0.00 0.00 0.00 5.03
2414 2433 1.632018 CCTGGGGGAAAGGTATGCGA 61.632 60.000 0.00 0.00 33.58 5.10
2415 2434 1.152963 CCTGGGGGAAAGGTATGCG 60.153 63.158 0.00 0.00 33.58 4.73
2426 2445 1.541368 TCTTTGGTCTCCCTGGGGG 60.541 63.158 14.00 10.35 46.11 5.40
2427 2446 1.566298 CCTCTTTGGTCTCCCTGGGG 61.566 65.000 14.00 2.42 0.00 4.96
2428 2447 1.566298 CCCTCTTTGGTCTCCCTGGG 61.566 65.000 6.33 6.33 0.00 4.45
2429 2448 1.994463 CCCTCTTTGGTCTCCCTGG 59.006 63.158 0.00 0.00 0.00 4.45
2430 2449 1.301293 GCCCTCTTTGGTCTCCCTG 59.699 63.158 0.00 0.00 0.00 4.45
2431 2450 1.925972 GGCCCTCTTTGGTCTCCCT 60.926 63.158 0.00 0.00 0.00 4.20
2432 2451 1.575447 ATGGCCCTCTTTGGTCTCCC 61.575 60.000 0.00 0.00 0.00 4.30
2433 2452 0.394899 CATGGCCCTCTTTGGTCTCC 60.395 60.000 0.00 0.00 0.00 3.71
2434 2453 1.034292 GCATGGCCCTCTTTGGTCTC 61.034 60.000 0.00 0.00 0.00 3.36
2435 2454 1.000396 GCATGGCCCTCTTTGGTCT 60.000 57.895 0.00 0.00 0.00 3.85
2436 2455 2.054453 GGCATGGCCCTCTTTGGTC 61.054 63.158 8.35 0.00 44.06 4.02
2437 2456 2.037847 GGCATGGCCCTCTTTGGT 59.962 61.111 8.35 0.00 44.06 3.67
2446 2465 2.631012 AAATCCCTCTCGGCATGGCC 62.631 60.000 14.46 0.00 46.75 5.36
2447 2466 1.152881 AAATCCCTCTCGGCATGGC 60.153 57.895 9.69 9.69 0.00 4.40
2448 2467 0.471617 AGAAATCCCTCTCGGCATGG 59.528 55.000 0.00 0.00 0.00 3.66
2449 2468 1.590932 CAGAAATCCCTCTCGGCATG 58.409 55.000 0.00 0.00 0.00 4.06
2450 2469 0.471617 CCAGAAATCCCTCTCGGCAT 59.528 55.000 0.00 0.00 0.00 4.40
2451 2470 1.626356 CCCAGAAATCCCTCTCGGCA 61.626 60.000 0.00 0.00 0.00 5.69
2452 2471 1.147153 CCCAGAAATCCCTCTCGGC 59.853 63.158 0.00 0.00 0.00 5.54
2453 2472 0.755686 CTCCCAGAAATCCCTCTCGG 59.244 60.000 0.00 0.00 0.00 4.63
2454 2473 1.686052 CTCTCCCAGAAATCCCTCTCG 59.314 57.143 0.00 0.00 0.00 4.04
2455 2474 2.046292 CCTCTCCCAGAAATCCCTCTC 58.954 57.143 0.00 0.00 0.00 3.20
2456 2475 1.344906 CCCTCTCCCAGAAATCCCTCT 60.345 57.143 0.00 0.00 0.00 3.69
2457 2476 1.135960 CCCTCTCCCAGAAATCCCTC 58.864 60.000 0.00 0.00 0.00 4.30
2458 2477 0.990818 GCCCTCTCCCAGAAATCCCT 60.991 60.000 0.00 0.00 0.00 4.20
2459 2478 0.990818 AGCCCTCTCCCAGAAATCCC 60.991 60.000 0.00 0.00 0.00 3.85
2460 2479 0.922626 AAGCCCTCTCCCAGAAATCC 59.077 55.000 0.00 0.00 0.00 3.01
2461 2480 1.409381 CCAAGCCCTCTCCCAGAAATC 60.409 57.143 0.00 0.00 0.00 2.17
2462 2481 0.627986 CCAAGCCCTCTCCCAGAAAT 59.372 55.000 0.00 0.00 0.00 2.17
2463 2482 1.500783 CCCAAGCCCTCTCCCAGAAA 61.501 60.000 0.00 0.00 0.00 2.52
2464 2483 1.925455 CCCAAGCCCTCTCCCAGAA 60.925 63.158 0.00 0.00 0.00 3.02
2465 2484 2.285668 CCCAAGCCCTCTCCCAGA 60.286 66.667 0.00 0.00 0.00 3.86
2466 2485 2.285668 TCCCAAGCCCTCTCCCAG 60.286 66.667 0.00 0.00 0.00 4.45
2467 2486 2.610859 GTCCCAAGCCCTCTCCCA 60.611 66.667 0.00 0.00 0.00 4.37
2468 2487 1.988982 GATGTCCCAAGCCCTCTCCC 61.989 65.000 0.00 0.00 0.00 4.30
2469 2488 0.985490 AGATGTCCCAAGCCCTCTCC 60.985 60.000 0.00 0.00 0.00 3.71
2470 2489 0.915364 AAGATGTCCCAAGCCCTCTC 59.085 55.000 0.00 0.00 0.00 3.20
2471 2490 1.005215 CAAAGATGTCCCAAGCCCTCT 59.995 52.381 0.00 0.00 0.00 3.69
2472 2491 1.004745 TCAAAGATGTCCCAAGCCCTC 59.995 52.381 0.00 0.00 0.00 4.30
2473 2492 1.005215 CTCAAAGATGTCCCAAGCCCT 59.995 52.381 0.00 0.00 0.00 5.19
2474 2493 1.272147 ACTCAAAGATGTCCCAAGCCC 60.272 52.381 0.00 0.00 0.00 5.19
2475 2494 1.815003 CACTCAAAGATGTCCCAAGCC 59.185 52.381 0.00 0.00 0.00 4.35
2476 2495 1.815003 CCACTCAAAGATGTCCCAAGC 59.185 52.381 0.00 0.00 0.00 4.01
2477 2496 2.224867 ACCCACTCAAAGATGTCCCAAG 60.225 50.000 0.00 0.00 0.00 3.61
2478 2497 1.780309 ACCCACTCAAAGATGTCCCAA 59.220 47.619 0.00 0.00 0.00 4.12
2479 2498 1.444933 ACCCACTCAAAGATGTCCCA 58.555 50.000 0.00 0.00 0.00 4.37
2480 2499 2.162681 CAACCCACTCAAAGATGTCCC 58.837 52.381 0.00 0.00 0.00 4.46
2481 2500 3.077359 CTCAACCCACTCAAAGATGTCC 58.923 50.000 0.00 0.00 0.00 4.02
2482 2501 3.077359 CCTCAACCCACTCAAAGATGTC 58.923 50.000 0.00 0.00 0.00 3.06
2483 2502 2.711009 TCCTCAACCCACTCAAAGATGT 59.289 45.455 0.00 0.00 0.00 3.06
2484 2503 3.008375 TCTCCTCAACCCACTCAAAGATG 59.992 47.826 0.00 0.00 0.00 2.90
2485 2504 3.251484 TCTCCTCAACCCACTCAAAGAT 58.749 45.455 0.00 0.00 0.00 2.40
2486 2505 2.689658 TCTCCTCAACCCACTCAAAGA 58.310 47.619 0.00 0.00 0.00 2.52
2487 2506 3.492102 TTCTCCTCAACCCACTCAAAG 57.508 47.619 0.00 0.00 0.00 2.77
2488 2507 3.754965 CATTCTCCTCAACCCACTCAAA 58.245 45.455 0.00 0.00 0.00 2.69
2489 2508 2.553028 GCATTCTCCTCAACCCACTCAA 60.553 50.000 0.00 0.00 0.00 3.02
2490 2509 1.003580 GCATTCTCCTCAACCCACTCA 59.996 52.381 0.00 0.00 0.00 3.41
2491 2510 1.003580 TGCATTCTCCTCAACCCACTC 59.996 52.381 0.00 0.00 0.00 3.51
2492 2511 1.067295 TGCATTCTCCTCAACCCACT 58.933 50.000 0.00 0.00 0.00 4.00
2493 2512 1.168714 GTGCATTCTCCTCAACCCAC 58.831 55.000 0.00 0.00 0.00 4.61
2494 2513 1.067295 AGTGCATTCTCCTCAACCCA 58.933 50.000 0.00 0.00 0.00 4.51
2495 2514 2.206576 AAGTGCATTCTCCTCAACCC 57.793 50.000 0.00 0.00 0.00 4.11
2496 2515 2.887152 ACAAAGTGCATTCTCCTCAACC 59.113 45.455 0.00 0.00 0.00 3.77
2497 2516 4.757149 ACTACAAAGTGCATTCTCCTCAAC 59.243 41.667 0.00 0.00 33.57 3.18
2498 2517 4.973168 ACTACAAAGTGCATTCTCCTCAA 58.027 39.130 0.00 0.00 33.57 3.02
2499 2518 4.623932 ACTACAAAGTGCATTCTCCTCA 57.376 40.909 0.00 0.00 33.57 3.86
2500 2519 6.874134 TCTTTACTACAAAGTGCATTCTCCTC 59.126 38.462 0.00 0.00 36.36 3.71
2501 2520 6.651225 GTCTTTACTACAAAGTGCATTCTCCT 59.349 38.462 0.00 0.00 36.36 3.69
2502 2521 6.651225 AGTCTTTACTACAAAGTGCATTCTCC 59.349 38.462 0.00 0.00 36.36 3.71
2503 2522 7.659652 AGTCTTTACTACAAAGTGCATTCTC 57.340 36.000 0.00 0.00 36.36 2.87
2504 2523 9.555727 TTTAGTCTTTACTACAAAGTGCATTCT 57.444 29.630 0.00 0.00 37.94 2.40
2506 2525 9.946165 GTTTTAGTCTTTACTACAAAGTGCATT 57.054 29.630 0.00 0.00 37.94 3.56
2507 2526 9.116067 TGTTTTAGTCTTTACTACAAAGTGCAT 57.884 29.630 0.00 0.00 37.94 3.96
2508 2527 8.495361 TGTTTTAGTCTTTACTACAAAGTGCA 57.505 30.769 0.00 0.00 37.94 4.57
2509 2528 9.595357 GATGTTTTAGTCTTTACTACAAAGTGC 57.405 33.333 0.00 0.00 37.94 4.40
2511 2530 8.985805 CGGATGTTTTAGTCTTTACTACAAAGT 58.014 33.333 0.00 0.00 37.94 2.66
2512 2531 7.955864 GCGGATGTTTTAGTCTTTACTACAAAG 59.044 37.037 0.00 0.00 37.94 2.77
2513 2532 7.095102 GGCGGATGTTTTAGTCTTTACTACAAA 60.095 37.037 0.00 0.00 37.94 2.83
2514 2533 6.369615 GGCGGATGTTTTAGTCTTTACTACAA 59.630 38.462 0.00 0.00 37.94 2.41
2515 2534 5.870978 GGCGGATGTTTTAGTCTTTACTACA 59.129 40.000 0.00 0.00 37.94 2.74
2516 2535 5.870978 TGGCGGATGTTTTAGTCTTTACTAC 59.129 40.000 0.00 0.00 37.94 2.73
2517 2536 6.040209 TGGCGGATGTTTTAGTCTTTACTA 57.960 37.500 0.00 0.00 37.15 1.82
2518 2537 4.901868 TGGCGGATGTTTTAGTCTTTACT 58.098 39.130 0.00 0.00 39.91 2.24
2519 2538 4.094442 CCTGGCGGATGTTTTAGTCTTTAC 59.906 45.833 0.00 0.00 0.00 2.01
2520 2539 4.258543 CCTGGCGGATGTTTTAGTCTTTA 58.741 43.478 0.00 0.00 0.00 1.85
2521 2540 3.081804 CCTGGCGGATGTTTTAGTCTTT 58.918 45.455 0.00 0.00 0.00 2.52
2522 2541 2.711542 CCTGGCGGATGTTTTAGTCTT 58.288 47.619 0.00 0.00 0.00 3.01
2523 2542 1.679032 GCCTGGCGGATGTTTTAGTCT 60.679 52.381 1.35 0.00 0.00 3.24
2524 2543 0.733150 GCCTGGCGGATGTTTTAGTC 59.267 55.000 1.35 0.00 0.00 2.59
2525 2544 0.037590 TGCCTGGCGGATGTTTTAGT 59.962 50.000 14.98 0.00 0.00 2.24
2526 2545 0.734889 CTGCCTGGCGGATGTTTTAG 59.265 55.000 23.22 1.70 37.02 1.85
2527 2546 1.312371 GCTGCCTGGCGGATGTTTTA 61.312 55.000 31.08 0.00 37.02 1.52
2528 2547 2.639327 GCTGCCTGGCGGATGTTTT 61.639 57.895 31.08 0.00 37.02 2.43
2529 2548 3.064324 GCTGCCTGGCGGATGTTT 61.064 61.111 31.08 0.00 37.02 2.83
2530 2549 2.269520 TATGCTGCCTGGCGGATGTT 62.270 55.000 31.08 13.40 37.02 2.71
2531 2550 2.671370 CTATGCTGCCTGGCGGATGT 62.671 60.000 31.08 16.77 37.02 3.06
2532 2551 1.964891 CTATGCTGCCTGGCGGATG 60.965 63.158 31.08 13.37 37.02 3.51
2533 2552 2.429058 CTATGCTGCCTGGCGGAT 59.571 61.111 31.08 23.31 37.02 4.18
2534 2553 4.552365 GCTATGCTGCCTGGCGGA 62.552 66.667 31.08 18.35 37.02 5.54
2542 2561 1.373059 GGTAGGGAGGCTATGCTGC 59.627 63.158 0.00 0.00 0.00 5.25
2543 2562 1.484444 GGGGTAGGGAGGCTATGCTG 61.484 65.000 0.00 0.00 0.00 4.41
2544 2563 1.152008 GGGGTAGGGAGGCTATGCT 60.152 63.158 0.00 0.00 0.00 3.79
2545 2564 1.461461 TGGGGTAGGGAGGCTATGC 60.461 63.158 0.00 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.