Multiple sequence alignment - TraesCS2A01G546900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G546900 chr2A 100.000 3631 0 0 1 3631 755362149 755365779 0.000000e+00 6706.0
1 TraesCS2A01G546900 chr2A 84.363 793 90 17 2492 3273 755046388 755045619 0.000000e+00 747.0
2 TraesCS2A01G546900 chr2D 91.155 2815 177 33 859 3631 624093629 624096413 0.000000e+00 3753.0
3 TraesCS2A01G546900 chr2D 80.989 263 32 14 1017 1264 174579738 174579997 3.700000e-45 193.0
4 TraesCS2A01G546900 chr2D 81.061 132 21 2 283 411 480159530 480159400 6.410000e-18 102.0
5 TraesCS2A01G546900 chr2D 87.302 63 8 0 536 598 215850054 215850116 5.030000e-09 73.1
6 TraesCS2A01G546900 chr7D 90.238 2643 176 42 1022 3631 534333434 534336027 0.000000e+00 3376.0
7 TraesCS2A01G546900 chr7D 91.845 233 13 4 795 1026 534327836 534328063 1.630000e-83 320.0
8 TraesCS2A01G546900 chr7D 83.333 252 41 1 274 524 534325392 534325643 7.840000e-57 231.0
9 TraesCS2A01G546900 chr7D 85.780 218 25 5 25 239 410061792 410062006 3.650000e-55 226.0
10 TraesCS2A01G546900 chr7D 85.366 82 9 2 322 401 116991129 116991209 8.360000e-12 82.4
11 TraesCS2A01G546900 chr2B 90.730 2233 157 29 1433 3631 765919691 765921907 0.000000e+00 2931.0
12 TraesCS2A01G546900 chr2B 86.691 556 53 13 795 1341 765918963 765919506 6.710000e-167 597.0
13 TraesCS2A01G546900 chr2B 87.615 218 21 5 25 239 772411586 772411372 7.790000e-62 248.0
14 TraesCS2A01G546900 chr4B 91.713 181 15 0 3451 3631 378002410 378002230 6.020000e-63 252.0
15 TraesCS2A01G546900 chr4B 90.104 192 19 0 3440 3631 14569240 14569431 2.160000e-62 250.0
16 TraesCS2A01G546900 chr4B 92.157 51 3 1 362 412 29704982 29705031 1.810000e-08 71.3
17 TraesCS2A01G546900 chr3D 86.239 218 24 5 25 239 591170085 591169871 7.840000e-57 231.0
18 TraesCS2A01G546900 chr1B 86.239 218 24 5 25 239 688685582 688685368 7.840000e-57 231.0
19 TraesCS2A01G546900 chr1A 86.567 201 22 5 25 221 107465305 107465106 2.200000e-52 217.0
20 TraesCS2A01G546900 chr5D 85.938 192 23 4 27 215 247525363 247525173 6.150000e-48 202.0
21 TraesCS2A01G546900 chr5D 84.848 66 10 0 536 601 541560061 541559996 2.340000e-07 67.6
22 TraesCS2A01G546900 chr1D 88.889 162 18 0 3440 3601 437804324 437804163 2.210000e-47 200.0
23 TraesCS2A01G546900 chr1D 86.567 67 9 0 535 601 355127003 355126937 1.400000e-09 75.0
24 TraesCS2A01G546900 chrUn 88.608 158 18 0 3440 3597 256117728 256117885 3.700000e-45 193.0
25 TraesCS2A01G546900 chrUn 88.608 158 18 0 3440 3597 342150716 342150559 3.700000e-45 193.0
26 TraesCS2A01G546900 chrUn 88.608 158 18 0 3440 3597 342153206 342153049 3.700000e-45 193.0
27 TraesCS2A01G546900 chr7B 84.615 91 13 1 322 411 238650692 238650782 4.990000e-14 89.8
28 TraesCS2A01G546900 chr7B 82.796 93 12 4 323 412 113283335 113283244 3.010000e-11 80.5
29 TraesCS2A01G546900 chr4D 84.615 91 13 1 322 411 493973653 493973743 4.990000e-14 89.8
30 TraesCS2A01G546900 chr5B 84.270 89 12 2 325 411 596512372 596512460 6.460000e-13 86.1
31 TraesCS2A01G546900 chr7A 93.617 47 3 0 366 412 48477982 48477936 1.810000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G546900 chr2A 755362149 755365779 3630 False 6706.0 6706 100.0000 1 3631 1 chr2A.!!$F1 3630
1 TraesCS2A01G546900 chr2A 755045619 755046388 769 True 747.0 747 84.3630 2492 3273 1 chr2A.!!$R1 781
2 TraesCS2A01G546900 chr2D 624093629 624096413 2784 False 3753.0 3753 91.1550 859 3631 1 chr2D.!!$F3 2772
3 TraesCS2A01G546900 chr7D 534333434 534336027 2593 False 3376.0 3376 90.2380 1022 3631 1 chr7D.!!$F3 2609
4 TraesCS2A01G546900 chr7D 534325392 534328063 2671 False 275.5 320 87.5890 274 1026 2 chr7D.!!$F4 752
5 TraesCS2A01G546900 chr2B 765918963 765921907 2944 False 1764.0 2931 88.7105 795 3631 2 chr2B.!!$F1 2836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
317 318 0.031414 ACCTTACTACCATCGCCCCT 60.031 55.0 0.0 0.00 0.00 4.79 F
628 658 0.035820 GTGGGTGGTTTGCGGATAGA 60.036 55.0 0.0 0.00 0.00 1.98 F
1652 3734 0.036577 GAAGGCAGAGCTTGAGCAGA 60.037 55.0 5.7 0.00 45.16 4.26 F
2224 4316 0.401356 TTCTGCACCTGCTTGGATCA 59.599 50.0 0.0 0.76 42.66 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1829 3916 0.099436 GCCTCGCGCAATTGAGAAAT 59.901 50.0 13.83 0.00 37.47 2.17 R
2327 4419 0.830648 CAGATAGCAGGAACCCGGAA 59.169 55.0 0.73 0.00 0.00 4.30 R
2468 4562 0.907486 CCTGATCCCAGCTGACTTGA 59.093 55.0 17.39 6.48 39.07 3.02 R
3534 5656 1.021202 TGCGTGAAAAACTGTGGGAG 58.979 50.0 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.942115 GGTTTCTTAGGAGCTTGCTTAGG 59.058 47.826 0.00 0.00 0.00 2.69
23 24 4.323562 GGTTTCTTAGGAGCTTGCTTAGGA 60.324 45.833 0.00 0.00 0.00 2.94
24 25 4.744795 TTCTTAGGAGCTTGCTTAGGAG 57.255 45.455 0.00 0.00 0.00 3.69
30 31 2.867109 AGCTTGCTTAGGAGCTTTGA 57.133 45.000 0.00 0.00 46.55 2.69
31 32 3.146104 AGCTTGCTTAGGAGCTTTGAA 57.854 42.857 0.00 0.00 46.55 2.69
32 33 3.490348 AGCTTGCTTAGGAGCTTTGAAA 58.510 40.909 0.00 0.00 46.55 2.69
33 34 3.891366 AGCTTGCTTAGGAGCTTTGAAAA 59.109 39.130 0.00 0.00 46.55 2.29
34 35 4.342092 AGCTTGCTTAGGAGCTTTGAAAAA 59.658 37.500 0.00 0.00 46.55 1.94
54 55 6.991485 AAAAACGCTATGAAAAGTGACATG 57.009 33.333 0.00 0.00 0.00 3.21
55 56 5.940192 AAACGCTATGAAAAGTGACATGA 57.060 34.783 0.00 0.00 0.00 3.07
56 57 6.500684 AAACGCTATGAAAAGTGACATGAT 57.499 33.333 0.00 0.00 0.00 2.45
57 58 7.609760 AAACGCTATGAAAAGTGACATGATA 57.390 32.000 0.00 0.00 0.00 2.15
58 59 7.609760 AACGCTATGAAAAGTGACATGATAA 57.390 32.000 0.00 0.00 0.00 1.75
59 60 7.609760 ACGCTATGAAAAGTGACATGATAAA 57.390 32.000 0.00 0.00 0.00 1.40
60 61 8.039603 ACGCTATGAAAAGTGACATGATAAAA 57.960 30.769 0.00 0.00 0.00 1.52
61 62 7.962918 ACGCTATGAAAAGTGACATGATAAAAC 59.037 33.333 0.00 0.00 0.00 2.43
62 63 8.177663 CGCTATGAAAAGTGACATGATAAAACT 58.822 33.333 0.00 0.00 0.00 2.66
63 64 9.846248 GCTATGAAAAGTGACATGATAAAACTT 57.154 29.630 0.00 0.00 32.60 2.66
72 73 8.734386 AGTGACATGATAAAACTTGATTCTTCC 58.266 33.333 0.00 0.00 0.00 3.46
73 74 8.514594 GTGACATGATAAAACTTGATTCTTCCA 58.485 33.333 0.00 0.00 0.00 3.53
74 75 9.076781 TGACATGATAAAACTTGATTCTTCCAA 57.923 29.630 0.00 0.00 0.00 3.53
75 76 9.565213 GACATGATAAAACTTGATTCTTCCAAG 57.435 33.333 0.00 0.00 44.75 3.61
86 87 8.870160 CTTGATTCTTCCAAGTACTCTCTATG 57.130 38.462 0.00 0.00 36.99 2.23
87 88 7.353414 TGATTCTTCCAAGTACTCTCTATGG 57.647 40.000 4.41 4.41 0.00 2.74
88 89 7.126061 TGATTCTTCCAAGTACTCTCTATGGA 58.874 38.462 8.84 8.84 38.36 3.41
89 90 7.619698 TGATTCTTCCAAGTACTCTCTATGGAA 59.380 37.037 19.94 19.94 45.33 3.53
90 91 6.777213 TCTTCCAAGTACTCTCTATGGAAC 57.223 41.667 18.09 0.00 43.33 3.62
91 92 5.657302 TCTTCCAAGTACTCTCTATGGAACC 59.343 44.000 18.09 0.00 43.33 3.62
92 93 5.208294 TCCAAGTACTCTCTATGGAACCT 57.792 43.478 10.24 0.00 37.24 3.50
93 94 6.337185 TCCAAGTACTCTCTATGGAACCTA 57.663 41.667 10.24 0.00 37.24 3.08
94 95 6.923670 TCCAAGTACTCTCTATGGAACCTAT 58.076 40.000 10.24 0.00 37.24 2.57
95 96 6.778069 TCCAAGTACTCTCTATGGAACCTATG 59.222 42.308 10.24 0.00 37.24 2.23
96 97 6.778069 CCAAGTACTCTCTATGGAACCTATGA 59.222 42.308 4.76 0.00 32.82 2.15
97 98 7.453126 CCAAGTACTCTCTATGGAACCTATGAT 59.547 40.741 4.76 0.00 32.82 2.45
98 99 8.303156 CAAGTACTCTCTATGGAACCTATGATG 58.697 40.741 0.00 0.00 0.00 3.07
99 100 6.951198 AGTACTCTCTATGGAACCTATGATGG 59.049 42.308 0.00 0.00 0.00 3.51
100 101 5.970289 ACTCTCTATGGAACCTATGATGGA 58.030 41.667 0.00 0.00 0.00 3.41
101 102 6.385443 ACTCTCTATGGAACCTATGATGGAA 58.615 40.000 0.00 0.00 0.00 3.53
102 103 6.496565 ACTCTCTATGGAACCTATGATGGAAG 59.503 42.308 0.00 0.00 0.00 3.46
103 104 6.624297 TCTCTATGGAACCTATGATGGAAGA 58.376 40.000 0.00 0.00 0.00 2.87
104 105 6.495181 TCTCTATGGAACCTATGATGGAAGAC 59.505 42.308 0.00 0.00 0.00 3.01
105 106 6.143206 TCTATGGAACCTATGATGGAAGACA 58.857 40.000 0.00 0.00 0.00 3.41
106 107 5.919348 ATGGAACCTATGATGGAAGACAT 57.081 39.130 0.00 0.00 44.18 3.06
122 123 6.455360 GAAGACATCCATTATTGCAAAGGA 57.545 37.500 1.71 9.44 0.00 3.36
123 124 7.047460 GAAGACATCCATTATTGCAAAGGAT 57.953 36.000 15.97 15.97 39.58 3.24
124 125 7.427989 AAGACATCCATTATTGCAAAGGATT 57.572 32.000 18.00 12.19 36.99 3.01
125 126 7.427989 AGACATCCATTATTGCAAAGGATTT 57.572 32.000 18.00 14.12 40.26 2.17
142 143 8.537728 AAAGGATTTGTATGAGCCAATTATGA 57.462 30.769 0.00 0.00 36.60 2.15
143 144 8.537728 AAGGATTTGTATGAGCCAATTATGAA 57.462 30.769 0.00 0.00 0.00 2.57
144 145 8.537728 AGGATTTGTATGAGCCAATTATGAAA 57.462 30.769 0.00 0.00 0.00 2.69
145 146 8.636213 AGGATTTGTATGAGCCAATTATGAAAG 58.364 33.333 0.00 0.00 0.00 2.62
146 147 8.632679 GGATTTGTATGAGCCAATTATGAAAGA 58.367 33.333 0.00 0.00 0.00 2.52
147 148 9.455847 GATTTGTATGAGCCAATTATGAAAGAC 57.544 33.333 0.00 0.00 0.00 3.01
148 149 7.936496 TTGTATGAGCCAATTATGAAAGACA 57.064 32.000 0.00 0.00 0.00 3.41
149 150 7.936496 TGTATGAGCCAATTATGAAAGACAA 57.064 32.000 0.00 0.00 0.00 3.18
150 151 7.988737 TGTATGAGCCAATTATGAAAGACAAG 58.011 34.615 0.00 0.00 0.00 3.16
151 152 7.828717 TGTATGAGCCAATTATGAAAGACAAGA 59.171 33.333 0.00 0.00 0.00 3.02
152 153 7.893124 ATGAGCCAATTATGAAAGACAAGAT 57.107 32.000 0.00 0.00 0.00 2.40
153 154 8.985315 ATGAGCCAATTATGAAAGACAAGATA 57.015 30.769 0.00 0.00 0.00 1.98
154 155 8.985315 TGAGCCAATTATGAAAGACAAGATAT 57.015 30.769 0.00 0.00 0.00 1.63
155 156 9.060347 TGAGCCAATTATGAAAGACAAGATATC 57.940 33.333 0.00 0.00 0.00 1.63
156 157 8.401490 AGCCAATTATGAAAGACAAGATATCC 57.599 34.615 0.00 0.00 0.00 2.59
157 158 8.000709 AGCCAATTATGAAAGACAAGATATCCA 58.999 33.333 0.00 0.00 0.00 3.41
158 159 8.078596 GCCAATTATGAAAGACAAGATATCCAC 58.921 37.037 0.00 0.00 0.00 4.02
159 160 9.347240 CCAATTATGAAAGACAAGATATCCACT 57.653 33.333 0.00 0.00 0.00 4.00
161 162 8.915057 ATTATGAAAGACAAGATATCCACTGG 57.085 34.615 0.00 0.00 0.00 4.00
162 163 5.762179 TGAAAGACAAGATATCCACTGGT 57.238 39.130 0.00 0.00 0.00 4.00
163 164 5.491070 TGAAAGACAAGATATCCACTGGTG 58.509 41.667 0.00 0.00 0.00 4.17
164 165 5.013079 TGAAAGACAAGATATCCACTGGTGT 59.987 40.000 0.00 0.00 0.00 4.16
165 166 4.744795 AGACAAGATATCCACTGGTGTC 57.255 45.455 0.00 6.25 35.30 3.67
166 167 4.096681 AGACAAGATATCCACTGGTGTCA 58.903 43.478 13.82 0.00 37.07 3.58
167 168 4.081420 AGACAAGATATCCACTGGTGTCAC 60.081 45.833 13.82 0.00 37.07 3.67
168 169 3.190079 CAAGATATCCACTGGTGTCACG 58.810 50.000 0.00 0.00 0.00 4.35
169 170 1.757118 AGATATCCACTGGTGTCACGG 59.243 52.381 0.00 0.00 0.00 4.94
170 171 1.754803 GATATCCACTGGTGTCACGGA 59.245 52.381 0.00 0.00 0.00 4.69
171 172 1.634960 TATCCACTGGTGTCACGGAA 58.365 50.000 1.98 0.00 0.00 4.30
172 173 0.762418 ATCCACTGGTGTCACGGAAA 59.238 50.000 1.98 0.00 0.00 3.13
173 174 0.542333 TCCACTGGTGTCACGGAAAA 59.458 50.000 0.00 0.00 0.00 2.29
174 175 1.065345 TCCACTGGTGTCACGGAAAAA 60.065 47.619 0.00 0.00 0.00 1.94
175 176 1.333619 CCACTGGTGTCACGGAAAAAG 59.666 52.381 0.00 0.00 0.00 2.27
176 177 2.285083 CACTGGTGTCACGGAAAAAGA 58.715 47.619 0.00 0.00 0.00 2.52
177 178 2.680841 CACTGGTGTCACGGAAAAAGAA 59.319 45.455 0.00 0.00 0.00 2.52
178 179 3.315191 CACTGGTGTCACGGAAAAAGAAT 59.685 43.478 0.00 0.00 0.00 2.40
179 180 3.315191 ACTGGTGTCACGGAAAAAGAATG 59.685 43.478 0.00 0.00 0.00 2.67
180 181 3.546724 TGGTGTCACGGAAAAAGAATGA 58.453 40.909 0.00 0.00 0.00 2.57
181 182 3.563808 TGGTGTCACGGAAAAAGAATGAG 59.436 43.478 0.00 0.00 0.00 2.90
182 183 3.058224 GGTGTCACGGAAAAAGAATGAGG 60.058 47.826 0.00 0.00 0.00 3.86
183 184 3.813166 GTGTCACGGAAAAAGAATGAGGA 59.187 43.478 0.00 0.00 0.00 3.71
184 185 4.065088 TGTCACGGAAAAAGAATGAGGAG 58.935 43.478 0.00 0.00 0.00 3.69
185 186 4.065789 GTCACGGAAAAAGAATGAGGAGT 58.934 43.478 0.00 0.00 0.00 3.85
186 187 4.065088 TCACGGAAAAAGAATGAGGAGTG 58.935 43.478 0.00 0.00 0.00 3.51
187 188 3.815401 CACGGAAAAAGAATGAGGAGTGT 59.185 43.478 0.00 0.00 0.00 3.55
188 189 4.275936 CACGGAAAAAGAATGAGGAGTGTT 59.724 41.667 0.00 0.00 0.00 3.32
189 190 4.275936 ACGGAAAAAGAATGAGGAGTGTTG 59.724 41.667 0.00 0.00 0.00 3.33
190 191 4.550422 GGAAAAAGAATGAGGAGTGTTGC 58.450 43.478 0.00 0.00 0.00 4.17
191 192 4.037923 GGAAAAAGAATGAGGAGTGTTGCA 59.962 41.667 0.00 0.00 0.00 4.08
192 193 5.279156 GGAAAAAGAATGAGGAGTGTTGCAT 60.279 40.000 0.00 0.00 0.00 3.96
193 194 6.071952 GGAAAAAGAATGAGGAGTGTTGCATA 60.072 38.462 0.00 0.00 0.00 3.14
194 195 6.506500 AAAAGAATGAGGAGTGTTGCATAG 57.493 37.500 0.00 0.00 0.00 2.23
195 196 5.426689 AAGAATGAGGAGTGTTGCATAGA 57.573 39.130 0.00 0.00 0.00 1.98
196 197 5.426689 AGAATGAGGAGTGTTGCATAGAA 57.573 39.130 0.00 0.00 0.00 2.10
197 198 5.809001 AGAATGAGGAGTGTTGCATAGAAA 58.191 37.500 0.00 0.00 0.00 2.52
198 199 5.879223 AGAATGAGGAGTGTTGCATAGAAAG 59.121 40.000 0.00 0.00 0.00 2.62
199 200 3.942829 TGAGGAGTGTTGCATAGAAAGG 58.057 45.455 0.00 0.00 0.00 3.11
200 201 2.680339 GAGGAGTGTTGCATAGAAAGGC 59.320 50.000 0.00 0.00 0.00 4.35
201 202 2.040278 AGGAGTGTTGCATAGAAAGGCA 59.960 45.455 0.00 0.00 41.44 4.75
202 203 2.421424 GGAGTGTTGCATAGAAAGGCAG 59.579 50.000 0.00 0.00 44.32 4.85
203 204 3.077359 GAGTGTTGCATAGAAAGGCAGT 58.923 45.455 0.00 0.00 44.32 4.40
204 205 4.253685 GAGTGTTGCATAGAAAGGCAGTA 58.746 43.478 0.00 0.00 44.32 2.74
205 206 4.256920 AGTGTTGCATAGAAAGGCAGTAG 58.743 43.478 0.00 0.00 44.32 2.57
206 207 3.375299 GTGTTGCATAGAAAGGCAGTAGG 59.625 47.826 0.00 0.00 44.32 3.18
207 208 3.009033 TGTTGCATAGAAAGGCAGTAGGT 59.991 43.478 0.00 0.00 44.32 3.08
208 209 4.010349 GTTGCATAGAAAGGCAGTAGGTT 58.990 43.478 0.00 0.00 44.32 3.50
209 210 4.301072 TGCATAGAAAGGCAGTAGGTTT 57.699 40.909 0.00 0.00 37.52 3.27
210 211 4.009675 TGCATAGAAAGGCAGTAGGTTTG 58.990 43.478 0.00 0.00 37.52 2.93
211 212 4.261801 GCATAGAAAGGCAGTAGGTTTGA 58.738 43.478 0.00 0.00 31.14 2.69
212 213 4.884164 GCATAGAAAGGCAGTAGGTTTGAT 59.116 41.667 0.00 0.00 31.14 2.57
213 214 5.358160 GCATAGAAAGGCAGTAGGTTTGATT 59.642 40.000 0.00 0.00 31.14 2.57
214 215 6.458888 GCATAGAAAGGCAGTAGGTTTGATTC 60.459 42.308 0.00 0.00 31.14 2.52
215 216 4.985538 AGAAAGGCAGTAGGTTTGATTCA 58.014 39.130 0.00 0.00 0.00 2.57
216 217 5.574188 AGAAAGGCAGTAGGTTTGATTCAT 58.426 37.500 0.00 0.00 0.00 2.57
217 218 6.012745 AGAAAGGCAGTAGGTTTGATTCATT 58.987 36.000 0.00 0.00 0.00 2.57
218 219 6.494835 AGAAAGGCAGTAGGTTTGATTCATTT 59.505 34.615 0.00 0.00 0.00 2.32
219 220 7.669722 AGAAAGGCAGTAGGTTTGATTCATTTA 59.330 33.333 0.00 0.00 0.00 1.40
220 221 7.961326 AAGGCAGTAGGTTTGATTCATTTAT 57.039 32.000 0.00 0.00 0.00 1.40
221 222 7.338800 AGGCAGTAGGTTTGATTCATTTATG 57.661 36.000 0.00 0.00 0.00 1.90
222 223 6.891908 AGGCAGTAGGTTTGATTCATTTATGT 59.108 34.615 0.00 0.00 0.00 2.29
223 224 8.052748 AGGCAGTAGGTTTGATTCATTTATGTA 58.947 33.333 0.00 0.00 0.00 2.29
224 225 8.129211 GGCAGTAGGTTTGATTCATTTATGTAC 58.871 37.037 0.00 0.00 0.00 2.90
225 226 8.893727 GCAGTAGGTTTGATTCATTTATGTACT 58.106 33.333 0.00 0.00 0.00 2.73
228 229 9.916397 GTAGGTTTGATTCATTTATGTACTTCG 57.084 33.333 0.00 0.00 0.00 3.79
229 230 7.985476 AGGTTTGATTCATTTATGTACTTCGG 58.015 34.615 0.00 0.00 0.00 4.30
230 231 6.691388 GGTTTGATTCATTTATGTACTTCGGC 59.309 38.462 0.00 0.00 0.00 5.54
231 232 6.371809 TTGATTCATTTATGTACTTCGGCC 57.628 37.500 0.00 0.00 0.00 6.13
232 233 5.432645 TGATTCATTTATGTACTTCGGCCA 58.567 37.500 2.24 0.00 0.00 5.36
233 234 5.295787 TGATTCATTTATGTACTTCGGCCAC 59.704 40.000 2.24 0.00 0.00 5.01
234 235 4.209307 TCATTTATGTACTTCGGCCACA 57.791 40.909 2.24 0.00 0.00 4.17
235 236 4.580868 TCATTTATGTACTTCGGCCACAA 58.419 39.130 2.24 0.00 0.00 3.33
236 237 5.189928 TCATTTATGTACTTCGGCCACAAT 58.810 37.500 2.24 0.00 0.00 2.71
237 238 6.350103 TCATTTATGTACTTCGGCCACAATA 58.650 36.000 2.24 0.00 0.00 1.90
238 239 6.995686 TCATTTATGTACTTCGGCCACAATAT 59.004 34.615 2.24 0.00 0.00 1.28
239 240 8.151596 TCATTTATGTACTTCGGCCACAATATA 58.848 33.333 2.24 0.00 0.00 0.86
240 241 7.718272 TTTATGTACTTCGGCCACAATATAC 57.282 36.000 2.24 1.78 0.00 1.47
241 242 5.546621 ATGTACTTCGGCCACAATATACT 57.453 39.130 2.24 0.00 0.00 2.12
242 243 5.347620 TGTACTTCGGCCACAATATACTT 57.652 39.130 2.24 0.00 0.00 2.24
243 244 5.353938 TGTACTTCGGCCACAATATACTTC 58.646 41.667 2.24 0.00 0.00 3.01
244 245 4.481368 ACTTCGGCCACAATATACTTCA 57.519 40.909 2.24 0.00 0.00 3.02
245 246 4.189231 ACTTCGGCCACAATATACTTCAC 58.811 43.478 2.24 0.00 0.00 3.18
246 247 2.816689 TCGGCCACAATATACTTCACG 58.183 47.619 2.24 0.00 0.00 4.35
247 248 2.427812 TCGGCCACAATATACTTCACGA 59.572 45.455 2.24 0.00 0.00 4.35
248 249 3.119065 TCGGCCACAATATACTTCACGAA 60.119 43.478 2.24 0.00 0.00 3.85
249 250 3.619483 CGGCCACAATATACTTCACGAAA 59.381 43.478 2.24 0.00 0.00 3.46
250 251 4.093703 CGGCCACAATATACTTCACGAAAA 59.906 41.667 2.24 0.00 0.00 2.29
251 252 5.391097 CGGCCACAATATACTTCACGAAAAA 60.391 40.000 2.24 0.00 0.00 1.94
273 274 8.579850 AAAAAGAATGTGGAGTATTGCATAGA 57.420 30.769 0.00 0.00 0.00 1.98
274 275 8.579850 AAAAGAATGTGGAGTATTGCATAGAA 57.420 30.769 0.00 0.00 0.00 2.10
275 276 7.798596 AAGAATGTGGAGTATTGCATAGAAG 57.201 36.000 0.00 0.00 0.00 2.85
276 277 7.129457 AGAATGTGGAGTATTGCATAGAAGA 57.871 36.000 0.00 0.00 0.00 2.87
279 280 4.406972 TGTGGAGTATTGCATAGAAGAGCT 59.593 41.667 0.00 0.00 0.00 4.09
286 287 2.362736 TGCATAGAAGAGCTTTGGCAG 58.637 47.619 0.00 0.00 41.70 4.85
301 302 5.627040 GCTTTGGCAGTAGACTGTTATACCT 60.627 44.000 11.19 0.00 45.45 3.08
304 305 6.461110 TGGCAGTAGACTGTTATACCTTAC 57.539 41.667 11.19 0.00 45.45 2.34
306 307 7.348815 TGGCAGTAGACTGTTATACCTTACTA 58.651 38.462 11.19 0.00 45.45 1.82
316 317 1.708341 TACCTTACTACCATCGCCCC 58.292 55.000 0.00 0.00 0.00 5.80
317 318 0.031414 ACCTTACTACCATCGCCCCT 60.031 55.000 0.00 0.00 0.00 4.79
318 319 0.680061 CCTTACTACCATCGCCCCTC 59.320 60.000 0.00 0.00 0.00 4.30
319 320 1.705873 CTTACTACCATCGCCCCTCT 58.294 55.000 0.00 0.00 0.00 3.69
320 321 2.040178 CTTACTACCATCGCCCCTCTT 58.960 52.381 0.00 0.00 0.00 2.85
321 322 1.410004 TACTACCATCGCCCCTCTTG 58.590 55.000 0.00 0.00 0.00 3.02
343 344 3.181474 GGTAGGAAAAGGGTCAGATCTCG 60.181 52.174 0.00 0.00 0.00 4.04
381 383 2.003301 GTCGGATCTGGCTCAACTTTC 58.997 52.381 0.00 0.00 0.00 2.62
426 428 2.478746 CCGATTTTGGCGTGGACG 59.521 61.111 0.00 0.00 43.27 4.79
451 453 4.526152 GGTTGCTACAAAACCGCG 57.474 55.556 0.00 0.00 37.90 6.46
452 454 1.728074 GGTTGCTACAAAACCGCGC 60.728 57.895 0.00 0.00 37.90 6.86
453 455 1.728074 GTTGCTACAAAACCGCGCC 60.728 57.895 0.00 0.00 0.00 6.53
455 457 4.111016 GCTACAAAACCGCGCCCC 62.111 66.667 0.00 0.00 0.00 5.80
493 495 1.681486 GGCTAGAGGGGTCAGAGTGC 61.681 65.000 0.00 0.00 0.00 4.40
496 498 0.259065 TAGAGGGGTCAGAGTGCGAT 59.741 55.000 0.00 0.00 0.00 4.58
503 505 2.353803 GGGTCAGAGTGCGATGTTTAGT 60.354 50.000 0.00 0.00 0.00 2.24
510 512 0.250510 TGCGATGTTTAGTGTGCCCA 60.251 50.000 0.00 0.00 0.00 5.36
511 513 0.878416 GCGATGTTTAGTGTGCCCAA 59.122 50.000 0.00 0.00 0.00 4.12
524 526 2.200337 GCCCAAACTCCCGCAAAGT 61.200 57.895 0.00 0.00 0.00 2.66
525 527 1.744320 GCCCAAACTCCCGCAAAGTT 61.744 55.000 0.00 0.00 38.59 2.66
526 528 0.750249 CCCAAACTCCCGCAAAGTTT 59.250 50.000 3.07 3.07 45.41 2.66
527 529 1.269569 CCCAAACTCCCGCAAAGTTTC 60.270 52.381 5.41 0.00 43.31 2.78
530 532 1.770294 AACTCCCGCAAAGTTTCCAA 58.230 45.000 0.00 0.00 33.19 3.53
531 533 1.770294 ACTCCCGCAAAGTTTCCAAA 58.230 45.000 0.00 0.00 0.00 3.28
555 565 3.187842 GGTTTACGGAAGAAATTGCGTCT 59.812 43.478 10.75 0.00 45.62 4.18
556 566 4.148891 GTTTACGGAAGAAATTGCGTCTG 58.851 43.478 10.75 6.64 45.62 3.51
561 571 1.128692 GAAGAAATTGCGTCTGGACCG 59.871 52.381 0.00 0.00 0.00 4.79
580 590 4.203076 GCCGCGGACCGATACAGT 62.203 66.667 33.48 0.00 40.02 3.55
589 599 0.527565 ACCGATACAGTACCGCGTTT 59.472 50.000 4.92 0.00 0.00 3.60
590 600 0.918619 CCGATACAGTACCGCGTTTG 59.081 55.000 4.92 0.00 0.00 2.93
591 601 1.467883 CCGATACAGTACCGCGTTTGA 60.468 52.381 4.92 0.00 0.00 2.69
598 608 0.519961 GTACCGCGTTTGATGGCTTT 59.480 50.000 4.92 0.00 0.00 3.51
601 611 1.495509 CGCGTTTGATGGCTTTCGA 59.504 52.632 0.00 0.00 0.00 3.71
602 612 0.110419 CGCGTTTGATGGCTTTCGAA 60.110 50.000 0.00 0.00 0.00 3.71
603 613 1.465689 CGCGTTTGATGGCTTTCGAAT 60.466 47.619 0.00 0.00 0.00 3.34
608 638 4.260212 CGTTTGATGGCTTTCGAATCGTAT 60.260 41.667 1.52 0.00 0.00 3.06
610 640 3.792401 TGATGGCTTTCGAATCGTATGT 58.208 40.909 1.52 0.00 0.00 2.29
614 644 2.277084 GCTTTCGAATCGTATGTGGGT 58.723 47.619 1.52 0.00 0.00 4.51
621 651 1.459450 ATCGTATGTGGGTGGTTTGC 58.541 50.000 0.00 0.00 0.00 3.68
624 654 0.606944 GTATGTGGGTGGTTTGCGGA 60.607 55.000 0.00 0.00 0.00 5.54
626 656 0.329931 ATGTGGGTGGTTTGCGGATA 59.670 50.000 0.00 0.00 0.00 2.59
628 658 0.035820 GTGGGTGGTTTGCGGATAGA 60.036 55.000 0.00 0.00 0.00 1.98
640 670 0.861837 CGGATAGACGCTGGAAATGC 59.138 55.000 0.00 0.00 0.00 3.56
641 671 1.539065 CGGATAGACGCTGGAAATGCT 60.539 52.381 0.00 0.00 0.00 3.79
642 672 2.139118 GGATAGACGCTGGAAATGCTC 58.861 52.381 0.00 0.00 0.00 4.26
643 673 2.224161 GGATAGACGCTGGAAATGCTCT 60.224 50.000 0.00 0.00 0.00 4.09
644 674 3.005897 GGATAGACGCTGGAAATGCTCTA 59.994 47.826 0.00 0.00 0.00 2.43
645 675 4.501571 GGATAGACGCTGGAAATGCTCTAA 60.502 45.833 0.00 0.00 0.00 2.10
646 676 2.622436 AGACGCTGGAAATGCTCTAAC 58.378 47.619 0.00 0.00 0.00 2.34
667 697 8.100791 TCTAACCATGCTCTTAGTTACAACATT 58.899 33.333 0.00 0.00 0.00 2.71
668 698 6.500684 ACCATGCTCTTAGTTACAACATTG 57.499 37.500 0.00 0.00 0.00 2.82
673 2450 7.667043 TGCTCTTAGTTACAACATTGTTAGG 57.333 36.000 1.98 0.00 42.35 2.69
678 2455 7.994334 TCTTAGTTACAACATTGTTAGGTGGTT 59.006 33.333 1.98 0.00 42.35 3.67
680 2457 6.123651 AGTTACAACATTGTTAGGTGGTTCA 58.876 36.000 1.98 0.00 42.35 3.18
681 2458 4.911514 ACAACATTGTTAGGTGGTTCAC 57.088 40.909 0.86 0.00 38.47 3.18
683 2460 3.478857 ACATTGTTAGGTGGTTCACGA 57.521 42.857 0.00 0.00 34.83 4.35
690 2467 1.227853 GGTGGTTCACGAAGCTGGT 60.228 57.895 10.08 0.00 39.38 4.00
700 2477 6.018180 GGTTCACGAAGCTGGTTATTATTAGG 60.018 42.308 1.79 0.00 36.02 2.69
702 2479 6.646267 TCACGAAGCTGGTTATTATTAGGTT 58.354 36.000 0.00 0.00 33.99 3.50
703 2480 7.784037 TCACGAAGCTGGTTATTATTAGGTTA 58.216 34.615 0.00 0.00 31.73 2.85
727 2646 4.225860 TGGTCCACTTCGGTCCAT 57.774 55.556 0.00 0.00 46.71 3.41
731 2650 0.108138 GTCCACTTCGGTCCATCTGG 60.108 60.000 0.00 0.00 35.57 3.86
732 2651 1.450312 CCACTTCGGTCCATCTGGC 60.450 63.158 0.00 0.00 34.44 4.85
759 2700 2.734591 CCGCCTTGCCGCTAGATA 59.265 61.111 3.16 0.00 0.00 1.98
852 2793 2.683867 CCACTGTTCCTACTCTACTCCG 59.316 54.545 0.00 0.00 0.00 4.63
853 2794 3.607741 CACTGTTCCTACTCTACTCCGA 58.392 50.000 0.00 0.00 0.00 4.55
854 2795 4.200874 CACTGTTCCTACTCTACTCCGAT 58.799 47.826 0.00 0.00 0.00 4.18
855 2796 4.273969 CACTGTTCCTACTCTACTCCGATC 59.726 50.000 0.00 0.00 0.00 3.69
856 2797 4.080469 ACTGTTCCTACTCTACTCCGATCA 60.080 45.833 0.00 0.00 0.00 2.92
857 2798 4.851843 TGTTCCTACTCTACTCCGATCAA 58.148 43.478 0.00 0.00 0.00 2.57
862 2803 6.307776 TCCTACTCTACTCCGATCAAATCAT 58.692 40.000 0.00 0.00 0.00 2.45
866 2807 6.045318 ACTCTACTCCGATCAAATCATGTTG 58.955 40.000 0.00 0.00 0.00 3.33
867 2808 5.359756 TCTACTCCGATCAAATCATGTTGG 58.640 41.667 0.00 0.00 0.00 3.77
890 2831 6.003950 GGAAAAATATCCTCCGATCCAATCA 58.996 40.000 0.00 0.00 36.50 2.57
893 2834 1.806496 ATCCTCCGATCCAATCACCA 58.194 50.000 0.00 0.00 0.00 4.17
997 2942 7.546667 CCATTTCTCTTCTCTTCTCTTCTCTTG 59.453 40.741 0.00 0.00 0.00 3.02
1325 3291 3.070590 ACCTCCCATTAATACGTGGTAGC 59.929 47.826 0.00 0.00 33.55 3.58
1387 3421 7.328493 TGAACTCAACTAGTAACATCAATCACG 59.672 37.037 0.00 0.00 37.50 4.35
1440 3507 5.783360 TCAATCACTAGGGAGGTTACTGAAA 59.217 40.000 0.00 0.00 0.00 2.69
1501 3568 1.280133 TCAGCTTGCCACTGCTCTAAT 59.720 47.619 0.00 0.00 37.44 1.73
1613 3692 1.197721 CTCCTTGCTTGGTTGCTAACG 59.802 52.381 0.00 0.00 0.00 3.18
1652 3734 0.036577 GAAGGCAGAGCTTGAGCAGA 60.037 55.000 5.70 0.00 45.16 4.26
1717 3799 2.623502 GGCCACTCTTCAGGTACTCCTA 60.624 54.545 0.00 0.00 43.07 2.94
1740 3822 5.235516 ACAACTGTATCCAACTTCCTTACG 58.764 41.667 0.00 0.00 0.00 3.18
1752 3834 5.061920 ACTTCCTTACGTCTTCAGATCAC 57.938 43.478 0.00 0.00 0.00 3.06
1760 3846 2.665537 CGTCTTCAGATCACAACAGAGC 59.334 50.000 0.00 0.00 0.00 4.09
1778 3864 3.831911 AGAGCTCCTAAGATAGACATGCC 59.168 47.826 10.93 0.00 0.00 4.40
1806 3893 1.599518 AGCAATTCGACCGGTGCAA 60.600 52.632 14.63 4.11 39.50 4.08
1832 3919 2.124860 GCGGCGGTAGTCCCATTT 60.125 61.111 9.78 0.00 0.00 2.32
1838 3925 2.421529 GGCGGTAGTCCCATTTCTCAAT 60.422 50.000 0.00 0.00 0.00 2.57
1843 3930 1.474077 AGTCCCATTTCTCAATTGCGC 59.526 47.619 0.00 0.00 0.00 6.09
1844 3931 0.451383 TCCCATTTCTCAATTGCGCG 59.549 50.000 0.00 0.00 0.00 6.86
1877 3964 2.413765 GGGCTCGGCTTCTACTCG 59.586 66.667 0.00 0.00 0.00 4.18
1956 4047 4.549458 CACCAGCAACCTCATTTACTTTG 58.451 43.478 0.00 0.00 0.00 2.77
1979 4070 4.440250 GGATCGTCCATTCTTCTTCGAGAA 60.440 45.833 0.00 0.00 39.76 2.87
1996 4087 3.551046 CGAGAAATCACCTCCCTGATACG 60.551 52.174 0.00 0.00 30.27 3.06
2033 4124 1.280421 GACAGGGAATTGCTGAGAGGT 59.720 52.381 0.00 0.00 0.00 3.85
2093 4184 2.203788 TTCTGGCGTGACTCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
2123 4214 3.956848 TCATCTCCTTGTCGATGATGAGT 59.043 43.478 0.00 0.00 40.62 3.41
2132 4223 1.301244 GATGATGAGTGGCGGCGAT 60.301 57.895 12.98 0.00 0.00 4.58
2151 4242 3.815401 CGATGGTAAGATGGAAATGGGTC 59.185 47.826 0.00 0.00 0.00 4.46
2170 4262 2.120312 TCACAGGTTCTGTAACACCCA 58.880 47.619 0.00 0.00 43.43 4.51
2173 4265 4.348461 TCACAGGTTCTGTAACACCCAATA 59.652 41.667 0.00 0.00 43.43 1.90
2174 4266 5.013704 TCACAGGTTCTGTAACACCCAATAT 59.986 40.000 0.00 0.00 43.43 1.28
2175 4267 6.213802 TCACAGGTTCTGTAACACCCAATATA 59.786 38.462 0.00 0.00 43.43 0.86
2183 4275 7.107542 TCTGTAACACCCAATATAACTTGACC 58.892 38.462 0.00 0.00 0.00 4.02
2224 4316 0.401356 TTCTGCACCTGCTTGGATCA 59.599 50.000 0.00 0.76 42.66 2.92
2231 4323 1.272872 ACCTGCTTGGATCATGGCTTT 60.273 47.619 0.00 0.00 39.71 3.51
2327 4419 1.137404 GAGCGCCGCAATGTTCATT 59.863 52.632 13.36 0.00 0.00 2.57
2397 4490 2.161855 TGCCTTGACAGAATTTCGCAT 58.838 42.857 0.00 0.00 0.00 4.73
2432 4526 8.908786 ATGTATTCTCTCTGTTTTCTTGTTGA 57.091 30.769 0.00 0.00 0.00 3.18
2468 4562 2.851263 TCTCGTGGCTTGGTTACATT 57.149 45.000 0.00 0.00 0.00 2.71
2471 4565 2.811431 CTCGTGGCTTGGTTACATTCAA 59.189 45.455 0.00 0.00 0.00 2.69
2501 4595 2.872858 GGATCAGGCGATTGGTAAACTC 59.127 50.000 0.00 0.00 29.66 3.01
2686 4782 2.087646 GGCACCAGAAGTTTCTCATCC 58.912 52.381 0.00 0.00 34.74 3.51
2777 4885 9.995957 TTCAACAATTTGTACCAATATACATCG 57.004 29.630 1.76 0.00 35.04 3.84
2797 4905 2.243810 GATCCGTATCCAGCCTTCTCT 58.756 52.381 0.00 0.00 0.00 3.10
2858 4968 1.355971 CCCGTACAACAACTCATCGG 58.644 55.000 0.00 0.00 36.85 4.18
2906 5025 5.192327 AGTGCAAAAAGGATGAAGAAGTG 57.808 39.130 0.00 0.00 0.00 3.16
2952 5073 5.823861 ATTTGCAACTACCAGGGAAAAAT 57.176 34.783 0.00 0.00 0.00 1.82
2953 5074 6.926630 ATTTGCAACTACCAGGGAAAAATA 57.073 33.333 0.00 0.00 0.00 1.40
2954 5075 6.732896 TTTGCAACTACCAGGGAAAAATAA 57.267 33.333 0.00 0.00 0.00 1.40
3039 5161 0.680921 AATGGCACCGAAGTGGGATG 60.681 55.000 0.00 0.00 44.69 3.51
3042 5164 1.745489 GCACCGAAGTGGGATGGAC 60.745 63.158 0.00 0.00 44.69 4.02
3160 5282 0.621571 TGGGGCAGAGACCTTGCTAT 60.622 55.000 0.00 0.00 0.00 2.97
3161 5283 0.179034 GGGGCAGAGACCTTGCTATG 60.179 60.000 0.00 0.00 0.00 2.23
3534 5656 2.695359 TCAGGCTCGTTAACCATCAAC 58.305 47.619 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.942115 CCTAAGCAAGCTCCTAAGAAACC 59.058 47.826 0.00 0.00 0.00 3.27
1 2 4.833390 TCCTAAGCAAGCTCCTAAGAAAC 58.167 43.478 0.00 0.00 0.00 2.78
2 3 5.091261 CTCCTAAGCAAGCTCCTAAGAAA 57.909 43.478 0.00 0.00 0.00 2.52
3 4 4.744795 CTCCTAAGCAAGCTCCTAAGAA 57.255 45.455 0.00 0.00 0.00 2.52
31 32 6.734137 TCATGTCACTTTTCATAGCGTTTTT 58.266 32.000 0.00 0.00 0.00 1.94
32 33 6.312399 TCATGTCACTTTTCATAGCGTTTT 57.688 33.333 0.00 0.00 0.00 2.43
33 34 5.940192 TCATGTCACTTTTCATAGCGTTT 57.060 34.783 0.00 0.00 0.00 3.60
34 35 7.609760 TTATCATGTCACTTTTCATAGCGTT 57.390 32.000 0.00 0.00 0.00 4.84
35 36 7.609760 TTTATCATGTCACTTTTCATAGCGT 57.390 32.000 0.00 0.00 0.00 5.07
36 37 8.177663 AGTTTTATCATGTCACTTTTCATAGCG 58.822 33.333 0.00 0.00 0.00 4.26
37 38 9.846248 AAGTTTTATCATGTCACTTTTCATAGC 57.154 29.630 0.00 0.00 0.00 2.97
46 47 8.734386 GGAAGAATCAAGTTTTATCATGTCACT 58.266 33.333 0.00 0.00 0.00 3.41
47 48 8.514594 TGGAAGAATCAAGTTTTATCATGTCAC 58.485 33.333 0.00 0.00 0.00 3.67
48 49 8.634335 TGGAAGAATCAAGTTTTATCATGTCA 57.366 30.769 0.00 0.00 0.00 3.58
49 50 9.565213 CTTGGAAGAATCAAGTTTTATCATGTC 57.435 33.333 0.00 0.00 37.43 3.06
61 62 7.925483 CCATAGAGAGTACTTGGAAGAATCAAG 59.075 40.741 4.76 0.00 45.03 3.02
62 63 7.619698 TCCATAGAGAGTACTTGGAAGAATCAA 59.380 37.037 10.24 0.00 33.66 2.57
63 64 7.126061 TCCATAGAGAGTACTTGGAAGAATCA 58.874 38.462 10.24 0.00 33.66 2.57
64 65 7.589958 TCCATAGAGAGTACTTGGAAGAATC 57.410 40.000 10.24 0.00 33.66 2.52
65 66 7.147637 GGTTCCATAGAGAGTACTTGGAAGAAT 60.148 40.741 21.16 0.00 44.70 2.40
66 67 6.154706 GGTTCCATAGAGAGTACTTGGAAGAA 59.845 42.308 21.16 3.48 44.70 2.52
67 68 5.657302 GGTTCCATAGAGAGTACTTGGAAGA 59.343 44.000 21.16 4.09 44.70 2.87
68 69 5.659079 AGGTTCCATAGAGAGTACTTGGAAG 59.341 44.000 21.16 1.75 44.70 3.46
69 70 5.590818 AGGTTCCATAGAGAGTACTTGGAA 58.409 41.667 18.09 18.09 42.58 3.53
70 71 5.208294 AGGTTCCATAGAGAGTACTTGGA 57.792 43.478 8.84 8.84 34.74 3.53
71 72 6.778069 TCATAGGTTCCATAGAGAGTACTTGG 59.222 42.308 0.00 0.00 0.00 3.61
72 73 7.825331 TCATAGGTTCCATAGAGAGTACTTG 57.175 40.000 0.00 0.00 0.00 3.16
73 74 7.453126 CCATCATAGGTTCCATAGAGAGTACTT 59.547 40.741 0.00 0.00 0.00 2.24
74 75 6.951198 CCATCATAGGTTCCATAGAGAGTACT 59.049 42.308 0.00 0.00 0.00 2.73
75 76 6.948886 TCCATCATAGGTTCCATAGAGAGTAC 59.051 42.308 0.00 0.00 0.00 2.73
76 77 7.103745 TCCATCATAGGTTCCATAGAGAGTA 57.896 40.000 0.00 0.00 0.00 2.59
77 78 5.970289 TCCATCATAGGTTCCATAGAGAGT 58.030 41.667 0.00 0.00 0.00 3.24
78 79 6.723515 TCTTCCATCATAGGTTCCATAGAGAG 59.276 42.308 0.00 0.00 0.00 3.20
79 80 6.495181 GTCTTCCATCATAGGTTCCATAGAGA 59.505 42.308 0.00 0.00 0.00 3.10
80 81 6.268617 TGTCTTCCATCATAGGTTCCATAGAG 59.731 42.308 0.00 0.00 0.00 2.43
81 82 6.143206 TGTCTTCCATCATAGGTTCCATAGA 58.857 40.000 0.00 0.00 0.00 1.98
82 83 6.425210 TGTCTTCCATCATAGGTTCCATAG 57.575 41.667 0.00 0.00 0.00 2.23
84 85 5.919348 ATGTCTTCCATCATAGGTTCCAT 57.081 39.130 0.00 0.00 0.00 3.41
98 99 5.360714 TCCTTTGCAATAATGGATGTCTTCC 59.639 40.000 0.00 0.00 45.69 3.46
99 100 6.455360 TCCTTTGCAATAATGGATGTCTTC 57.545 37.500 0.00 0.00 0.00 2.87
100 101 7.427989 AATCCTTTGCAATAATGGATGTCTT 57.572 32.000 18.19 6.74 37.56 3.01
101 102 7.093201 ACAAATCCTTTGCAATAATGGATGTCT 60.093 33.333 18.19 4.81 44.39 3.41
102 103 7.043565 ACAAATCCTTTGCAATAATGGATGTC 58.956 34.615 18.19 0.00 44.39 3.06
103 104 6.949715 ACAAATCCTTTGCAATAATGGATGT 58.050 32.000 18.19 13.07 44.39 3.06
104 105 8.984764 CATACAAATCCTTTGCAATAATGGATG 58.015 33.333 18.19 12.28 44.39 3.51
105 106 8.926374 TCATACAAATCCTTTGCAATAATGGAT 58.074 29.630 0.00 8.78 44.39 3.41
106 107 8.303780 TCATACAAATCCTTTGCAATAATGGA 57.696 30.769 0.00 6.71 44.39 3.41
107 108 7.170320 GCTCATACAAATCCTTTGCAATAATGG 59.830 37.037 0.00 0.82 44.39 3.16
108 109 7.170320 GGCTCATACAAATCCTTTGCAATAATG 59.830 37.037 0.00 0.00 44.39 1.90
109 110 7.147689 TGGCTCATACAAATCCTTTGCAATAAT 60.148 33.333 0.00 0.00 44.39 1.28
110 111 6.154192 TGGCTCATACAAATCCTTTGCAATAA 59.846 34.615 0.00 0.00 44.39 1.40
111 112 5.655974 TGGCTCATACAAATCCTTTGCAATA 59.344 36.000 0.00 0.00 44.39 1.90
112 113 4.467082 TGGCTCATACAAATCCTTTGCAAT 59.533 37.500 0.00 0.00 44.39 3.56
113 114 3.831333 TGGCTCATACAAATCCTTTGCAA 59.169 39.130 0.00 0.00 44.39 4.08
114 115 3.429492 TGGCTCATACAAATCCTTTGCA 58.571 40.909 0.00 0.00 44.39 4.08
115 116 4.454728 TTGGCTCATACAAATCCTTTGC 57.545 40.909 0.00 0.00 44.39 3.68
116 117 8.415553 TCATAATTGGCTCATACAAATCCTTTG 58.584 33.333 0.00 0.00 45.95 2.77
117 118 8.537728 TCATAATTGGCTCATACAAATCCTTT 57.462 30.769 0.00 0.00 0.00 3.11
118 119 8.537728 TTCATAATTGGCTCATACAAATCCTT 57.462 30.769 0.00 0.00 0.00 3.36
119 120 8.537728 TTTCATAATTGGCTCATACAAATCCT 57.462 30.769 0.00 0.00 0.00 3.24
120 121 8.632679 TCTTTCATAATTGGCTCATACAAATCC 58.367 33.333 0.00 0.00 0.00 3.01
121 122 9.455847 GTCTTTCATAATTGGCTCATACAAATC 57.544 33.333 0.00 0.00 0.00 2.17
122 123 8.970020 TGTCTTTCATAATTGGCTCATACAAAT 58.030 29.630 0.00 0.00 0.00 2.32
123 124 8.347004 TGTCTTTCATAATTGGCTCATACAAA 57.653 30.769 0.00 0.00 0.00 2.83
124 125 7.936496 TGTCTTTCATAATTGGCTCATACAA 57.064 32.000 0.00 0.00 0.00 2.41
125 126 7.828717 TCTTGTCTTTCATAATTGGCTCATACA 59.171 33.333 0.00 0.00 0.00 2.29
126 127 8.213518 TCTTGTCTTTCATAATTGGCTCATAC 57.786 34.615 0.00 0.00 0.00 2.39
127 128 8.985315 ATCTTGTCTTTCATAATTGGCTCATA 57.015 30.769 0.00 0.00 0.00 2.15
128 129 7.893124 ATCTTGTCTTTCATAATTGGCTCAT 57.107 32.000 0.00 0.00 0.00 2.90
129 130 8.985315 ATATCTTGTCTTTCATAATTGGCTCA 57.015 30.769 0.00 0.00 0.00 4.26
130 131 8.510505 GGATATCTTGTCTTTCATAATTGGCTC 58.489 37.037 2.05 0.00 0.00 4.70
131 132 8.000709 TGGATATCTTGTCTTTCATAATTGGCT 58.999 33.333 2.05 0.00 0.00 4.75
132 133 8.078596 GTGGATATCTTGTCTTTCATAATTGGC 58.921 37.037 2.05 0.00 0.00 4.52
133 134 9.347240 AGTGGATATCTTGTCTTTCATAATTGG 57.653 33.333 2.05 0.00 0.00 3.16
135 136 9.347240 CCAGTGGATATCTTGTCTTTCATAATT 57.653 33.333 1.68 0.00 0.00 1.40
136 137 8.497745 ACCAGTGGATATCTTGTCTTTCATAAT 58.502 33.333 18.40 0.00 0.00 1.28
137 138 7.770433 CACCAGTGGATATCTTGTCTTTCATAA 59.230 37.037 18.40 0.00 0.00 1.90
138 139 7.092891 ACACCAGTGGATATCTTGTCTTTCATA 60.093 37.037 18.40 0.00 34.19 2.15
139 140 6.118170 CACCAGTGGATATCTTGTCTTTCAT 58.882 40.000 18.40 0.00 0.00 2.57
140 141 5.013079 ACACCAGTGGATATCTTGTCTTTCA 59.987 40.000 18.40 0.00 34.19 2.69
141 142 5.491982 ACACCAGTGGATATCTTGTCTTTC 58.508 41.667 18.40 0.00 34.19 2.62
142 143 5.013079 TGACACCAGTGGATATCTTGTCTTT 59.987 40.000 18.40 0.00 34.33 2.52
143 144 4.532126 TGACACCAGTGGATATCTTGTCTT 59.468 41.667 18.40 0.00 34.33 3.01
144 145 4.081420 GTGACACCAGTGGATATCTTGTCT 60.081 45.833 18.40 0.00 34.33 3.41
145 146 4.184629 GTGACACCAGTGGATATCTTGTC 58.815 47.826 18.40 17.72 33.91 3.18
146 147 3.368427 CGTGACACCAGTGGATATCTTGT 60.368 47.826 18.40 8.52 34.19 3.16
147 148 3.190079 CGTGACACCAGTGGATATCTTG 58.810 50.000 18.40 4.75 34.19 3.02
148 149 2.168521 CCGTGACACCAGTGGATATCTT 59.831 50.000 18.40 0.00 34.19 2.40
149 150 1.757118 CCGTGACACCAGTGGATATCT 59.243 52.381 18.40 0.00 34.19 1.98
150 151 1.754803 TCCGTGACACCAGTGGATATC 59.245 52.381 18.40 10.46 34.19 1.63
151 152 1.860641 TCCGTGACACCAGTGGATAT 58.139 50.000 18.40 0.00 34.19 1.63
152 153 1.634960 TTCCGTGACACCAGTGGATA 58.365 50.000 18.40 0.00 30.73 2.59
153 154 0.762418 TTTCCGTGACACCAGTGGAT 59.238 50.000 18.40 2.75 30.73 3.41
154 155 0.542333 TTTTCCGTGACACCAGTGGA 59.458 50.000 18.40 0.00 34.19 4.02
155 156 1.333619 CTTTTTCCGTGACACCAGTGG 59.666 52.381 7.91 7.91 34.19 4.00
156 157 2.285083 TCTTTTTCCGTGACACCAGTG 58.715 47.619 0.00 0.00 0.00 3.66
157 158 2.702592 TCTTTTTCCGTGACACCAGT 57.297 45.000 0.00 0.00 0.00 4.00
158 159 3.563808 TCATTCTTTTTCCGTGACACCAG 59.436 43.478 0.00 0.00 0.00 4.00
159 160 3.546724 TCATTCTTTTTCCGTGACACCA 58.453 40.909 0.00 0.00 0.00 4.17
160 161 3.058224 CCTCATTCTTTTTCCGTGACACC 60.058 47.826 0.00 0.00 0.00 4.16
161 162 3.813166 TCCTCATTCTTTTTCCGTGACAC 59.187 43.478 0.00 0.00 0.00 3.67
162 163 4.065088 CTCCTCATTCTTTTTCCGTGACA 58.935 43.478 0.00 0.00 0.00 3.58
163 164 4.065789 ACTCCTCATTCTTTTTCCGTGAC 58.934 43.478 0.00 0.00 0.00 3.67
164 165 4.065088 CACTCCTCATTCTTTTTCCGTGA 58.935 43.478 0.00 0.00 0.00 4.35
165 166 3.815401 ACACTCCTCATTCTTTTTCCGTG 59.185 43.478 0.00 0.00 0.00 4.94
166 167 4.086706 ACACTCCTCATTCTTTTTCCGT 57.913 40.909 0.00 0.00 0.00 4.69
167 168 4.787598 CAACACTCCTCATTCTTTTTCCG 58.212 43.478 0.00 0.00 0.00 4.30
168 169 4.037923 TGCAACACTCCTCATTCTTTTTCC 59.962 41.667 0.00 0.00 0.00 3.13
169 170 5.186996 TGCAACACTCCTCATTCTTTTTC 57.813 39.130 0.00 0.00 0.00 2.29
170 171 5.796424 ATGCAACACTCCTCATTCTTTTT 57.204 34.783 0.00 0.00 0.00 1.94
171 172 6.240894 TCTATGCAACACTCCTCATTCTTTT 58.759 36.000 0.00 0.00 0.00 2.27
172 173 5.809001 TCTATGCAACACTCCTCATTCTTT 58.191 37.500 0.00 0.00 0.00 2.52
173 174 5.426689 TCTATGCAACACTCCTCATTCTT 57.573 39.130 0.00 0.00 0.00 2.52
174 175 5.426689 TTCTATGCAACACTCCTCATTCT 57.573 39.130 0.00 0.00 0.00 2.40
175 176 5.065731 CCTTTCTATGCAACACTCCTCATTC 59.934 44.000 0.00 0.00 0.00 2.67
176 177 4.946157 CCTTTCTATGCAACACTCCTCATT 59.054 41.667 0.00 0.00 0.00 2.57
177 178 4.521146 CCTTTCTATGCAACACTCCTCAT 58.479 43.478 0.00 0.00 0.00 2.90
178 179 3.869912 GCCTTTCTATGCAACACTCCTCA 60.870 47.826 0.00 0.00 0.00 3.86
179 180 2.680339 GCCTTTCTATGCAACACTCCTC 59.320 50.000 0.00 0.00 0.00 3.71
180 181 2.040278 TGCCTTTCTATGCAACACTCCT 59.960 45.455 0.00 0.00 33.87 3.69
181 182 2.421424 CTGCCTTTCTATGCAACACTCC 59.579 50.000 0.00 0.00 36.98 3.85
182 183 3.077359 ACTGCCTTTCTATGCAACACTC 58.923 45.455 0.00 0.00 36.98 3.51
183 184 3.146104 ACTGCCTTTCTATGCAACACT 57.854 42.857 0.00 0.00 36.98 3.55
184 185 3.375299 CCTACTGCCTTTCTATGCAACAC 59.625 47.826 0.00 0.00 36.98 3.32
185 186 3.009033 ACCTACTGCCTTTCTATGCAACA 59.991 43.478 0.00 0.00 36.98 3.33
186 187 3.610911 ACCTACTGCCTTTCTATGCAAC 58.389 45.455 0.00 0.00 36.98 4.17
187 188 4.301072 AACCTACTGCCTTTCTATGCAA 57.699 40.909 0.00 0.00 36.98 4.08
188 189 4.009675 CAAACCTACTGCCTTTCTATGCA 58.990 43.478 0.00 0.00 35.86 3.96
189 190 4.261801 TCAAACCTACTGCCTTTCTATGC 58.738 43.478 0.00 0.00 0.00 3.14
190 191 6.599244 TGAATCAAACCTACTGCCTTTCTATG 59.401 38.462 0.00 0.00 0.00 2.23
191 192 6.721318 TGAATCAAACCTACTGCCTTTCTAT 58.279 36.000 0.00 0.00 0.00 1.98
192 193 6.121776 TGAATCAAACCTACTGCCTTTCTA 57.878 37.500 0.00 0.00 0.00 2.10
193 194 4.985538 TGAATCAAACCTACTGCCTTTCT 58.014 39.130 0.00 0.00 0.00 2.52
194 195 5.904362 ATGAATCAAACCTACTGCCTTTC 57.096 39.130 0.00 0.00 0.00 2.62
195 196 6.670695 AAATGAATCAAACCTACTGCCTTT 57.329 33.333 0.00 0.00 0.00 3.11
196 197 7.397192 ACATAAATGAATCAAACCTACTGCCTT 59.603 33.333 0.00 0.00 0.00 4.35
197 198 6.891908 ACATAAATGAATCAAACCTACTGCCT 59.108 34.615 0.00 0.00 0.00 4.75
198 199 7.100458 ACATAAATGAATCAAACCTACTGCC 57.900 36.000 0.00 0.00 0.00 4.85
199 200 8.893727 AGTACATAAATGAATCAAACCTACTGC 58.106 33.333 0.00 0.00 0.00 4.40
202 203 9.916397 CGAAGTACATAAATGAATCAAACCTAC 57.084 33.333 0.00 0.00 0.00 3.18
203 204 9.104965 CCGAAGTACATAAATGAATCAAACCTA 57.895 33.333 0.00 0.00 0.00 3.08
204 205 7.415206 GCCGAAGTACATAAATGAATCAAACCT 60.415 37.037 0.00 0.00 0.00 3.50
205 206 6.691388 GCCGAAGTACATAAATGAATCAAACC 59.309 38.462 0.00 0.00 0.00 3.27
206 207 6.691388 GGCCGAAGTACATAAATGAATCAAAC 59.309 38.462 0.00 0.00 0.00 2.93
207 208 6.375736 TGGCCGAAGTACATAAATGAATCAAA 59.624 34.615 0.00 0.00 0.00 2.69
208 209 5.883115 TGGCCGAAGTACATAAATGAATCAA 59.117 36.000 0.00 0.00 0.00 2.57
209 210 5.295787 GTGGCCGAAGTACATAAATGAATCA 59.704 40.000 0.00 0.00 0.00 2.57
210 211 5.295787 TGTGGCCGAAGTACATAAATGAATC 59.704 40.000 0.00 0.00 0.00 2.52
211 212 5.189928 TGTGGCCGAAGTACATAAATGAAT 58.810 37.500 0.00 0.00 0.00 2.57
212 213 4.580868 TGTGGCCGAAGTACATAAATGAA 58.419 39.130 0.00 0.00 0.00 2.57
213 214 4.209307 TGTGGCCGAAGTACATAAATGA 57.791 40.909 0.00 0.00 0.00 2.57
214 215 4.955925 TTGTGGCCGAAGTACATAAATG 57.044 40.909 0.00 0.00 0.00 2.32
215 216 8.154856 AGTATATTGTGGCCGAAGTACATAAAT 58.845 33.333 0.00 0.00 0.00 1.40
216 217 7.502696 AGTATATTGTGGCCGAAGTACATAAA 58.497 34.615 0.00 0.00 0.00 1.40
217 218 7.058023 AGTATATTGTGGCCGAAGTACATAA 57.942 36.000 0.00 0.00 0.00 1.90
218 219 6.659745 AGTATATTGTGGCCGAAGTACATA 57.340 37.500 0.00 0.00 0.00 2.29
219 220 5.546621 AGTATATTGTGGCCGAAGTACAT 57.453 39.130 0.00 0.00 0.00 2.29
220 221 5.105269 TGAAGTATATTGTGGCCGAAGTACA 60.105 40.000 0.00 0.00 0.00 2.90
221 222 5.233689 GTGAAGTATATTGTGGCCGAAGTAC 59.766 44.000 0.00 1.90 0.00 2.73
222 223 5.353938 GTGAAGTATATTGTGGCCGAAGTA 58.646 41.667 0.00 0.00 0.00 2.24
223 224 4.189231 GTGAAGTATATTGTGGCCGAAGT 58.811 43.478 0.00 0.00 0.00 3.01
224 225 3.245284 CGTGAAGTATATTGTGGCCGAAG 59.755 47.826 0.00 0.00 0.00 3.79
225 226 3.119065 TCGTGAAGTATATTGTGGCCGAA 60.119 43.478 0.00 0.00 0.00 4.30
226 227 2.427812 TCGTGAAGTATATTGTGGCCGA 59.572 45.455 0.00 0.00 0.00 5.54
227 228 2.816689 TCGTGAAGTATATTGTGGCCG 58.183 47.619 0.00 0.00 0.00 6.13
228 229 5.554822 TTTTCGTGAAGTATATTGTGGCC 57.445 39.130 0.00 0.00 0.00 5.36
248 249 8.579850 TCTATGCAATACTCCACATTCTTTTT 57.420 30.769 0.00 0.00 0.00 1.94
249 250 8.579850 TTCTATGCAATACTCCACATTCTTTT 57.420 30.769 0.00 0.00 0.00 2.27
250 251 8.049117 TCTTCTATGCAATACTCCACATTCTTT 58.951 33.333 0.00 0.00 0.00 2.52
251 252 7.568349 TCTTCTATGCAATACTCCACATTCTT 58.432 34.615 0.00 0.00 0.00 2.52
252 253 7.129457 TCTTCTATGCAATACTCCACATTCT 57.871 36.000 0.00 0.00 0.00 2.40
253 254 6.073331 GCTCTTCTATGCAATACTCCACATTC 60.073 42.308 0.00 0.00 0.00 2.67
254 255 5.762218 GCTCTTCTATGCAATACTCCACATT 59.238 40.000 0.00 0.00 0.00 2.71
255 256 5.071519 AGCTCTTCTATGCAATACTCCACAT 59.928 40.000 0.00 0.00 0.00 3.21
256 257 4.406972 AGCTCTTCTATGCAATACTCCACA 59.593 41.667 0.00 0.00 0.00 4.17
257 258 4.954875 AGCTCTTCTATGCAATACTCCAC 58.045 43.478 0.00 0.00 0.00 4.02
258 259 5.620738 AAGCTCTTCTATGCAATACTCCA 57.379 39.130 0.00 0.00 0.00 3.86
259 260 5.238214 CCAAAGCTCTTCTATGCAATACTCC 59.762 44.000 0.00 0.00 0.00 3.85
260 261 5.277731 GCCAAAGCTCTTCTATGCAATACTC 60.278 44.000 0.00 0.00 35.50 2.59
261 262 4.578105 GCCAAAGCTCTTCTATGCAATACT 59.422 41.667 0.00 0.00 35.50 2.12
262 263 4.336433 TGCCAAAGCTCTTCTATGCAATAC 59.664 41.667 0.00 0.00 40.80 1.89
263 264 4.525996 TGCCAAAGCTCTTCTATGCAATA 58.474 39.130 0.00 0.00 40.80 1.90
264 265 3.359033 TGCCAAAGCTCTTCTATGCAAT 58.641 40.909 0.00 0.00 40.80 3.56
265 266 2.751259 CTGCCAAAGCTCTTCTATGCAA 59.249 45.455 0.00 0.00 40.80 4.08
266 267 2.290514 ACTGCCAAAGCTCTTCTATGCA 60.291 45.455 0.00 0.00 40.80 3.96
267 268 2.363683 ACTGCCAAAGCTCTTCTATGC 58.636 47.619 0.00 0.00 40.80 3.14
268 269 4.808364 GTCTACTGCCAAAGCTCTTCTATG 59.192 45.833 0.00 0.00 40.80 2.23
269 270 4.714308 AGTCTACTGCCAAAGCTCTTCTAT 59.286 41.667 0.00 0.00 40.80 1.98
270 271 4.081972 CAGTCTACTGCCAAAGCTCTTCTA 60.082 45.833 0.00 0.00 40.80 2.10
271 272 2.903135 AGTCTACTGCCAAAGCTCTTCT 59.097 45.455 0.00 0.00 40.80 2.85
272 273 2.999355 CAGTCTACTGCCAAAGCTCTTC 59.001 50.000 0.00 0.00 40.80 2.87
273 274 3.051081 CAGTCTACTGCCAAAGCTCTT 57.949 47.619 0.00 0.00 40.80 2.85
274 275 2.758736 CAGTCTACTGCCAAAGCTCT 57.241 50.000 0.00 0.00 40.80 4.09
286 287 8.502387 CGATGGTAGTAAGGTATAACAGTCTAC 58.498 40.741 0.00 0.00 0.00 2.59
301 302 1.760613 CAAGAGGGGCGATGGTAGTAA 59.239 52.381 0.00 0.00 0.00 2.24
304 305 1.338136 ACCAAGAGGGGCGATGGTAG 61.338 60.000 0.00 0.00 44.11 3.18
306 307 2.610859 ACCAAGAGGGGCGATGGT 60.611 61.111 0.00 0.00 42.91 3.55
316 317 3.583086 TCTGACCCTTTTCCTACCAAGAG 59.417 47.826 0.00 0.00 0.00 2.85
317 318 3.593942 TCTGACCCTTTTCCTACCAAGA 58.406 45.455 0.00 0.00 0.00 3.02
318 319 4.226168 AGATCTGACCCTTTTCCTACCAAG 59.774 45.833 0.00 0.00 0.00 3.61
319 320 4.175962 AGATCTGACCCTTTTCCTACCAA 58.824 43.478 0.00 0.00 0.00 3.67
320 321 3.775316 GAGATCTGACCCTTTTCCTACCA 59.225 47.826 0.00 0.00 0.00 3.25
321 322 3.181474 CGAGATCTGACCCTTTTCCTACC 60.181 52.174 0.00 0.00 0.00 3.18
358 359 0.179097 GTTGAGCCAGATCCGACTCC 60.179 60.000 4.54 0.00 0.00 3.85
359 360 0.820871 AGTTGAGCCAGATCCGACTC 59.179 55.000 0.00 0.00 0.00 3.36
360 361 1.270907 AAGTTGAGCCAGATCCGACT 58.729 50.000 0.00 0.00 0.00 4.18
361 362 2.003301 GAAAGTTGAGCCAGATCCGAC 58.997 52.381 0.00 0.00 0.00 4.79
362 363 1.404181 CGAAAGTTGAGCCAGATCCGA 60.404 52.381 0.00 0.00 0.00 4.55
363 364 1.002366 CGAAAGTTGAGCCAGATCCG 58.998 55.000 0.00 0.00 0.00 4.18
364 365 0.729690 GCGAAAGTTGAGCCAGATCC 59.270 55.000 0.00 0.00 0.00 3.36
381 383 1.134965 TGGTGTTTTGACCCTTTTGCG 60.135 47.619 0.00 0.00 34.79 4.85
421 423 2.550487 GCAACCTACATTGCGTCCA 58.450 52.632 0.00 0.00 45.08 4.02
432 434 1.149987 CGCGGTTTTGTAGCAACCTA 58.850 50.000 0.00 0.00 41.54 3.08
433 435 1.946267 CGCGGTTTTGTAGCAACCT 59.054 52.632 0.00 0.00 41.54 3.50
453 455 2.514516 ATCCAAAAGGAAGGCGGGGG 62.515 60.000 0.00 0.00 0.00 5.40
455 457 1.322538 CCATCCAAAAGGAAGGCGGG 61.323 60.000 0.00 0.00 0.00 6.13
457 459 1.948721 GCCCATCCAAAAGGAAGGCG 61.949 60.000 11.63 2.74 33.74 5.52
471 473 0.105246 CTCTGACCCCTCTAGCCCAT 60.105 60.000 0.00 0.00 0.00 4.00
476 478 0.394488 TCGCACTCTGACCCCTCTAG 60.394 60.000 0.00 0.00 0.00 2.43
477 479 0.259065 ATCGCACTCTGACCCCTCTA 59.741 55.000 0.00 0.00 0.00 2.43
478 480 1.000993 ATCGCACTCTGACCCCTCT 59.999 57.895 0.00 0.00 0.00 3.69
480 482 1.194781 AACATCGCACTCTGACCCCT 61.195 55.000 0.00 0.00 0.00 4.79
493 495 2.928694 GTTTGGGCACACTAAACATCG 58.071 47.619 0.00 0.00 46.30 3.84
503 505 3.723097 TTGCGGGAGTTTGGGCACA 62.723 57.895 0.00 0.00 34.72 4.57
510 512 1.770294 TGGAAACTTTGCGGGAGTTT 58.230 45.000 10.50 10.50 46.78 2.66
511 513 1.770294 TTGGAAACTTTGCGGGAGTT 58.230 45.000 0.00 0.00 38.92 3.01
524 526 3.539604 TCTTCCGTAAACCGTTTGGAAA 58.460 40.909 13.84 5.95 38.18 3.13
525 527 3.191078 TCTTCCGTAAACCGTTTGGAA 57.809 42.857 12.77 12.77 39.21 3.53
526 528 2.906691 TCTTCCGTAAACCGTTTGGA 57.093 45.000 6.77 3.09 39.21 3.53
527 529 3.967203 TTTCTTCCGTAAACCGTTTGG 57.033 42.857 6.77 0.65 42.84 3.28
530 532 3.607542 CGCAATTTCTTCCGTAAACCGTT 60.608 43.478 0.00 0.00 33.66 4.44
531 533 2.096119 CGCAATTTCTTCCGTAAACCGT 60.096 45.455 0.00 0.00 33.66 4.83
541 551 1.128692 CGGTCCAGACGCAATTTCTTC 59.871 52.381 0.00 0.00 0.00 2.87
542 552 1.156736 CGGTCCAGACGCAATTTCTT 58.843 50.000 0.00 0.00 0.00 2.52
564 574 1.009222 GTACTGTATCGGTCCGCGG 60.009 63.158 22.12 22.12 0.00 6.46
565 575 1.009222 GGTACTGTATCGGTCCGCG 60.009 63.158 6.34 0.00 0.00 6.46
567 577 1.009222 GCGGTACTGTATCGGTCCG 60.009 63.158 20.73 14.48 36.90 4.79
569 579 0.099436 AACGCGGTACTGTATCGGTC 59.901 55.000 20.73 5.46 31.73 4.79
571 581 0.918619 CAAACGCGGTACTGTATCGG 59.081 55.000 20.73 13.39 31.73 4.18
572 582 1.898938 TCAAACGCGGTACTGTATCG 58.101 50.000 15.77 15.77 34.87 2.92
576 586 1.296056 GCCATCAAACGCGGTACTGT 61.296 55.000 12.47 0.00 0.00 3.55
580 590 0.800012 GAAAGCCATCAAACGCGGTA 59.200 50.000 12.47 0.00 0.00 4.02
589 599 3.555547 CACATACGATTCGAAAGCCATCA 59.444 43.478 13.95 0.00 0.00 3.07
590 600 3.059597 CCACATACGATTCGAAAGCCATC 60.060 47.826 13.95 0.00 0.00 3.51
591 601 2.872245 CCACATACGATTCGAAAGCCAT 59.128 45.455 13.95 0.00 0.00 4.40
598 608 1.187974 ACCACCCACATACGATTCGA 58.812 50.000 13.95 0.00 0.00 3.71
601 611 1.816224 GCAAACCACCCACATACGATT 59.184 47.619 0.00 0.00 0.00 3.34
602 612 1.459450 GCAAACCACCCACATACGAT 58.541 50.000 0.00 0.00 0.00 3.73
603 613 0.951525 CGCAAACCACCCACATACGA 60.952 55.000 0.00 0.00 0.00 3.43
608 638 0.322098 CTATCCGCAAACCACCCACA 60.322 55.000 0.00 0.00 0.00 4.17
610 640 0.035820 GTCTATCCGCAAACCACCCA 60.036 55.000 0.00 0.00 0.00 4.51
621 651 0.861837 GCATTTCCAGCGTCTATCCG 59.138 55.000 0.00 0.00 0.00 4.18
624 654 4.372656 GTTAGAGCATTTCCAGCGTCTAT 58.627 43.478 0.00 0.00 37.01 1.98
626 656 2.622436 GTTAGAGCATTTCCAGCGTCT 58.378 47.619 0.00 0.00 37.01 4.18
628 658 1.003118 TGGTTAGAGCATTTCCAGCGT 59.997 47.619 0.00 0.00 37.01 5.07
631 661 3.285484 AGCATGGTTAGAGCATTTCCAG 58.715 45.455 0.00 0.00 33.46 3.86
636 666 5.365021 ACTAAGAGCATGGTTAGAGCATT 57.635 39.130 9.96 0.00 33.46 3.56
640 670 7.097192 TGTTGTAACTAAGAGCATGGTTAGAG 58.903 38.462 9.96 5.29 31.74 2.43
641 671 6.999950 TGTTGTAACTAAGAGCATGGTTAGA 58.000 36.000 9.96 0.00 31.74 2.10
642 672 7.849804 ATGTTGTAACTAAGAGCATGGTTAG 57.150 36.000 0.00 0.06 33.25 2.34
643 673 7.663905 ACAATGTTGTAACTAAGAGCATGGTTA 59.336 33.333 0.00 0.00 40.16 2.85
644 674 6.490040 ACAATGTTGTAACTAAGAGCATGGTT 59.510 34.615 0.00 0.00 40.16 3.67
645 675 6.003950 ACAATGTTGTAACTAAGAGCATGGT 58.996 36.000 0.00 0.00 40.16 3.55
646 676 6.500684 ACAATGTTGTAACTAAGAGCATGG 57.499 37.500 0.00 0.00 40.16 3.66
667 697 1.414919 AGCTTCGTGAACCACCTAACA 59.585 47.619 0.00 0.00 0.00 2.41
668 698 1.798813 CAGCTTCGTGAACCACCTAAC 59.201 52.381 0.00 0.00 0.00 2.34
673 2450 1.873698 TAACCAGCTTCGTGAACCAC 58.126 50.000 0.00 0.00 0.00 4.16
678 2455 6.229936 ACCTAATAATAACCAGCTTCGTGA 57.770 37.500 0.00 0.00 0.00 4.35
680 2457 8.015185 TCTAACCTAATAATAACCAGCTTCGT 57.985 34.615 0.00 0.00 0.00 3.85
681 2458 8.762426 GTTCTAACCTAATAATAACCAGCTTCG 58.238 37.037 0.00 0.00 0.00 3.79
700 2477 3.497262 CCGAAGTGGACCAAAGTTCTAAC 59.503 47.826 0.00 0.00 42.00 2.34
702 2479 2.701951 ACCGAAGTGGACCAAAGTTCTA 59.298 45.455 0.00 0.00 42.00 2.10
703 2480 1.489230 ACCGAAGTGGACCAAAGTTCT 59.511 47.619 0.00 0.00 42.00 3.01
742 2661 1.664965 GTATCTAGCGGCAAGGCGG 60.665 63.158 17.68 3.59 38.18 6.13
743 2662 1.067416 TGTATCTAGCGGCAAGGCG 59.933 57.895 11.94 11.94 38.18 5.52
744 2663 0.880718 GGTGTATCTAGCGGCAAGGC 60.881 60.000 1.45 0.00 0.00 4.35
745 2664 0.597637 CGGTGTATCTAGCGGCAAGG 60.598 60.000 1.45 0.00 37.86 3.61
746 2665 2.886859 CGGTGTATCTAGCGGCAAG 58.113 57.895 1.45 0.00 37.86 4.01
854 2795 8.477256 GGAGGATATTTTTCCAACATGATTTGA 58.523 33.333 0.00 0.00 38.32 2.69
855 2796 7.436080 CGGAGGATATTTTTCCAACATGATTTG 59.564 37.037 0.00 0.00 38.32 2.32
856 2797 7.341769 TCGGAGGATATTTTTCCAACATGATTT 59.658 33.333 0.00 0.00 38.32 2.17
857 2798 6.833416 TCGGAGGATATTTTTCCAACATGATT 59.167 34.615 0.00 0.00 38.32 2.57
862 2803 5.130350 GGATCGGAGGATATTTTTCCAACA 58.870 41.667 0.00 0.00 38.32 3.33
866 2807 6.003950 TGATTGGATCGGAGGATATTTTTCC 58.996 40.000 0.00 0.00 35.90 3.13
867 2808 6.072452 GGTGATTGGATCGGAGGATATTTTTC 60.072 42.308 0.00 0.00 31.51 2.29
953 2895 3.071206 GCGCTGGAGGGAGACAGA 61.071 66.667 0.00 0.00 36.86 3.41
1272 3235 2.456119 CGGATTGCACGAGACCTGC 61.456 63.158 0.00 0.00 35.03 4.85
1325 3291 2.742774 TCACACATCGTCAGTGAGTTG 58.257 47.619 10.61 0.00 40.16 3.16
1387 3421 2.086610 AGAAGATCAGGGAGGCTCTC 57.913 55.000 15.23 11.11 0.00 3.20
1440 3507 4.965119 GGCGACCTTTAACTGAATCAAT 57.035 40.909 0.00 0.00 0.00 2.57
1501 3568 6.231258 ACATGCTGAGATTCAGTCATTAGA 57.769 37.500 7.80 0.00 45.94 2.10
1652 3734 2.493278 GGATAGCACATGCACAACCTTT 59.507 45.455 6.64 0.00 45.16 3.11
1740 3822 3.924144 AGCTCTGTTGTGATCTGAAGAC 58.076 45.455 0.00 0.00 0.00 3.01
1752 3834 5.843673 TGTCTATCTTAGGAGCTCTGTTG 57.156 43.478 14.64 2.49 0.00 3.33
1760 3846 3.900601 ACAGGGCATGTCTATCTTAGGAG 59.099 47.826 0.00 0.00 37.75 3.69
1806 3893 3.352338 CTACCGCCGCGAAGAACCT 62.352 63.158 15.93 0.00 0.00 3.50
1829 3916 0.099436 GCCTCGCGCAATTGAGAAAT 59.901 50.000 13.83 0.00 37.47 2.17
1832 3919 1.361668 GAAGCCTCGCGCAATTGAGA 61.362 55.000 13.83 6.00 41.38 3.27
1838 3925 2.738521 GTGAGAAGCCTCGCGCAA 60.739 61.111 8.75 0.00 42.33 4.85
1877 3964 4.043073 CCGATTTTACTAGAGCTTCGTCC 58.957 47.826 0.00 0.00 0.00 4.79
1934 4025 4.549458 CAAAGTAAATGAGGTTGCTGGTG 58.451 43.478 0.00 0.00 0.00 4.17
1935 4026 3.573967 CCAAAGTAAATGAGGTTGCTGGT 59.426 43.478 0.00 0.00 0.00 4.00
1956 4047 3.066900 TCTCGAAGAAGAATGGACGATCC 59.933 47.826 0.00 0.00 34.09 3.36
1979 4070 3.850752 AGATCGTATCAGGGAGGTGATT 58.149 45.455 0.00 0.00 38.21 2.57
1996 4087 7.067496 TCCCTGTCAGAAACCATAATAGATC 57.933 40.000 0.00 0.00 0.00 2.75
2033 4124 3.315470 GCACGATGACATAGTACAGAGGA 59.685 47.826 0.50 0.00 0.00 3.71
2103 4194 3.069300 CCACTCATCATCGACAAGGAGAT 59.931 47.826 15.12 0.00 0.00 2.75
2123 4214 1.227527 CATCTTACCATCGCCGCCA 60.228 57.895 0.00 0.00 0.00 5.69
2132 4223 3.332187 TGTGACCCATTTCCATCTTACCA 59.668 43.478 0.00 0.00 0.00 3.25
2151 4242 2.631160 TGGGTGTTACAGAACCTGTG 57.369 50.000 9.64 0.00 45.01 3.66
2170 4262 8.561738 AAACGAACAGATGGTCAAGTTATATT 57.438 30.769 0.00 0.00 0.00 1.28
2173 4265 6.347402 CGAAAACGAACAGATGGTCAAGTTAT 60.347 38.462 0.00 0.00 0.00 1.89
2174 4266 5.050634 CGAAAACGAACAGATGGTCAAGTTA 60.051 40.000 0.00 0.00 0.00 2.24
2175 4267 4.260620 CGAAAACGAACAGATGGTCAAGTT 60.261 41.667 0.00 0.00 0.00 2.66
2183 4275 2.476619 ACTCAGCGAAAACGAACAGATG 59.523 45.455 0.00 0.00 0.00 2.90
2327 4419 0.830648 CAGATAGCAGGAACCCGGAA 59.169 55.000 0.73 0.00 0.00 4.30
2397 4490 3.118992 AGAGAGAATACATCAGCAACGCA 60.119 43.478 0.00 0.00 0.00 5.24
2468 4562 0.907486 CCTGATCCCAGCTGACTTGA 59.093 55.000 17.39 6.48 39.07 3.02
2471 4565 2.729479 CGCCTGATCCCAGCTGACT 61.729 63.158 17.39 0.00 39.07 3.41
2501 4595 4.430423 GCCAGCGCAACGAGAACG 62.430 66.667 11.47 0.00 39.23 3.95
2528 4622 5.084519 TCAGTTACAGGAATACACTCCACT 58.915 41.667 0.00 0.00 38.02 4.00
2686 4782 0.976641 GCTTCAAAGGGGAAAAGGGG 59.023 55.000 0.00 0.00 0.00 4.79
2797 4905 9.405587 GAAGAAATTGTCCATTTGAAACGAATA 57.594 29.630 0.00 0.00 35.02 1.75
2906 5025 3.190874 GAGCATGTAACTGTAGGCAGAC 58.809 50.000 1.30 0.00 45.28 3.51
3160 5282 3.864243 AGTACGAAAACAGTCACCAACA 58.136 40.909 0.00 0.00 0.00 3.33
3161 5283 3.866910 TGAGTACGAAAACAGTCACCAAC 59.133 43.478 0.00 0.00 0.00 3.77
3534 5656 1.021202 TGCGTGAAAAACTGTGGGAG 58.979 50.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.