Multiple sequence alignment - TraesCS2A01G546700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G546700 | chr2A | 100.000 | 3407 | 0 | 0 | 1 | 3407 | 755341916 | 755338510 | 0.000000e+00 | 6292.0 |
1 | TraesCS2A01G546700 | chr2A | 93.183 | 1819 | 79 | 25 | 988 | 2799 | 755118507 | 755120287 | 0.000000e+00 | 2630.0 |
2 | TraesCS2A01G546700 | chr2A | 90.782 | 358 | 8 | 6 | 3075 | 3407 | 755174078 | 755174435 | 4.010000e-124 | 455.0 |
3 | TraesCS2A01G546700 | chr2A | 86.667 | 180 | 11 | 3 | 2835 | 3001 | 755120287 | 755120466 | 1.610000e-43 | 187.0 |
4 | TraesCS2A01G546700 | chr2D | 93.378 | 1797 | 103 | 12 | 637 | 2420 | 624054540 | 624052747 | 0.000000e+00 | 2645.0 |
5 | TraesCS2A01G546700 | chr2D | 92.552 | 1544 | 105 | 5 | 1014 | 2552 | 623947750 | 623949288 | 0.000000e+00 | 2206.0 |
6 | TraesCS2A01G546700 | chr2D | 87.117 | 326 | 19 | 6 | 2699 | 3001 | 623951951 | 623952276 | 7.000000e-92 | 348.0 |
7 | TraesCS2A01G546700 | chr2D | 84.906 | 371 | 18 | 8 | 3071 | 3407 | 623955149 | 623955515 | 1.170000e-89 | 340.0 |
8 | TraesCS2A01G546700 | chr2D | 95.062 | 81 | 4 | 0 | 2998 | 3078 | 623955047 | 623955127 | 9.920000e-26 | 128.0 |
9 | TraesCS2A01G546700 | chr2D | 88.660 | 97 | 6 | 1 | 2615 | 2711 | 623950394 | 623950485 | 2.780000e-21 | 113.0 |
10 | TraesCS2A01G546700 | chr2B | 93.910 | 1445 | 88 | 0 | 976 | 2420 | 765792960 | 765791516 | 0.000000e+00 | 2182.0 |
11 | TraesCS2A01G546700 | chr2B | 93.333 | 1440 | 87 | 6 | 988 | 2420 | 765586440 | 765587877 | 0.000000e+00 | 2119.0 |
12 | TraesCS2A01G546700 | chr2B | 90.823 | 316 | 21 | 7 | 637 | 945 | 765793391 | 765793077 | 1.890000e-112 | 416.0 |
13 | TraesCS2A01G546700 | chr2B | 79.310 | 464 | 77 | 13 | 1 | 447 | 765794307 | 765793846 | 1.190000e-79 | 307.0 |
14 | TraesCS2A01G546700 | chr2B | 87.546 | 273 | 16 | 5 | 2747 | 3001 | 765588293 | 765588565 | 1.990000e-77 | 300.0 |
15 | TraesCS2A01G546700 | chr2B | 83.657 | 361 | 15 | 16 | 3071 | 3407 | 765590635 | 765590975 | 1.990000e-77 | 300.0 |
16 | TraesCS2A01G546700 | chr2B | 79.310 | 348 | 56 | 12 | 6 | 338 | 765795035 | 765794689 | 2.640000e-56 | 230.0 |
17 | TraesCS2A01G546700 | chr2B | 100.000 | 48 | 0 | 0 | 2676 | 2723 | 765588252 | 765588299 | 4.680000e-14 | 89.8 |
18 | TraesCS2A01G546700 | chr4A | 87.602 | 984 | 103 | 10 | 981 | 1949 | 677272514 | 677273493 | 0.000000e+00 | 1123.0 |
19 | TraesCS2A01G546700 | chr5D | 83.305 | 1192 | 163 | 24 | 1129 | 2305 | 238670466 | 238669296 | 0.000000e+00 | 1066.0 |
20 | TraesCS2A01G546700 | chr7A | 83.139 | 1198 | 163 | 25 | 1129 | 2305 | 262852442 | 262853621 | 0.000000e+00 | 1057.0 |
21 | TraesCS2A01G546700 | chr7B | 83.138 | 1192 | 162 | 25 | 1129 | 2299 | 222553191 | 222554364 | 0.000000e+00 | 1051.0 |
22 | TraesCS2A01G546700 | chr7D | 85.528 | 691 | 42 | 28 | 2350 | 3001 | 534447897 | 534447226 | 0.000000e+00 | 669.0 |
23 | TraesCS2A01G546700 | chr7D | 83.446 | 737 | 99 | 12 | 1583 | 2305 | 246388398 | 246389125 | 0.000000e+00 | 664.0 |
24 | TraesCS2A01G546700 | chr7D | 88.950 | 362 | 14 | 11 | 3071 | 3407 | 534444132 | 534443772 | 1.130000e-114 | 424.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G546700 | chr2A | 755338510 | 755341916 | 3406 | True | 6292.00 | 6292 | 100.00000 | 1 | 3407 | 1 | chr2A.!!$R1 | 3406 |
1 | TraesCS2A01G546700 | chr2A | 755118507 | 755120466 | 1959 | False | 1408.50 | 2630 | 89.92500 | 988 | 3001 | 2 | chr2A.!!$F2 | 2013 |
2 | TraesCS2A01G546700 | chr2D | 624052747 | 624054540 | 1793 | True | 2645.00 | 2645 | 93.37800 | 637 | 2420 | 1 | chr2D.!!$R1 | 1783 |
3 | TraesCS2A01G546700 | chr2D | 623947750 | 623955515 | 7765 | False | 627.00 | 2206 | 89.65940 | 1014 | 3407 | 5 | chr2D.!!$F1 | 2393 |
4 | TraesCS2A01G546700 | chr2B | 765791516 | 765795035 | 3519 | True | 783.75 | 2182 | 85.83825 | 1 | 2420 | 4 | chr2B.!!$R1 | 2419 |
5 | TraesCS2A01G546700 | chr2B | 765586440 | 765590975 | 4535 | False | 702.20 | 2119 | 91.13400 | 988 | 3407 | 4 | chr2B.!!$F1 | 2419 |
6 | TraesCS2A01G546700 | chr4A | 677272514 | 677273493 | 979 | False | 1123.00 | 1123 | 87.60200 | 981 | 1949 | 1 | chr4A.!!$F1 | 968 |
7 | TraesCS2A01G546700 | chr5D | 238669296 | 238670466 | 1170 | True | 1066.00 | 1066 | 83.30500 | 1129 | 2305 | 1 | chr5D.!!$R1 | 1176 |
8 | TraesCS2A01G546700 | chr7A | 262852442 | 262853621 | 1179 | False | 1057.00 | 1057 | 83.13900 | 1129 | 2305 | 1 | chr7A.!!$F1 | 1176 |
9 | TraesCS2A01G546700 | chr7B | 222553191 | 222554364 | 1173 | False | 1051.00 | 1051 | 83.13800 | 1129 | 2299 | 1 | chr7B.!!$F1 | 1170 |
10 | TraesCS2A01G546700 | chr7D | 246388398 | 246389125 | 727 | False | 664.00 | 664 | 83.44600 | 1583 | 2305 | 1 | chr7D.!!$F1 | 722 |
11 | TraesCS2A01G546700 | chr7D | 534443772 | 534447897 | 4125 | True | 546.50 | 669 | 87.23900 | 2350 | 3407 | 2 | chr7D.!!$R1 | 1057 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
216 | 231 | 0.034337 | TAGGGGTGTGCGTCAGTTTC | 59.966 | 55.0 | 0.0 | 0.0 | 0.0 | 2.78 | F |
958 | 2040 | 0.110486 | AGCCGACACTCCAAAACCAT | 59.890 | 50.0 | 0.0 | 0.0 | 0.0 | 3.55 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1539 | 2700 | 3.692406 | ACGAGCTTCCCGGTGACC | 61.692 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 | R |
2945 | 6903 | 1.559368 | TTAGTTGGCCAGCCGTACTA | 58.441 | 50.000 | 16.95 | 12.91 | 39.42 | 1.82 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
28 | 29 | 9.748708 | TGAAGAAGTTCATTAATTGTGGAAAAG | 57.251 | 29.630 | 5.50 | 0.00 | 37.79 | 2.27 |
29 | 30 | 9.965824 | GAAGAAGTTCATTAATTGTGGAAAAGA | 57.034 | 29.630 | 5.50 | 0.00 | 32.36 | 2.52 |
32 | 33 | 9.912634 | GAAGTTCATTAATTGTGGAAAAGATCA | 57.087 | 29.630 | 0.00 | 0.00 | 0.00 | 2.92 |
33 | 34 | 9.696917 | AAGTTCATTAATTGTGGAAAAGATCAC | 57.303 | 29.630 | 0.00 | 0.00 | 34.71 | 3.06 |
34 | 35 | 8.023128 | AGTTCATTAATTGTGGAAAAGATCACG | 58.977 | 33.333 | 0.00 | 0.00 | 36.74 | 4.35 |
35 | 36 | 7.680442 | TCATTAATTGTGGAAAAGATCACGA | 57.320 | 32.000 | 0.00 | 0.00 | 36.74 | 4.35 |
36 | 37 | 7.751732 | TCATTAATTGTGGAAAAGATCACGAG | 58.248 | 34.615 | 0.00 | 0.00 | 36.74 | 4.18 |
41 | 42 | 6.539649 | TTGTGGAAAAGATCACGAGTTTAG | 57.460 | 37.500 | 0.00 | 0.00 | 36.74 | 1.85 |
42 | 43 | 5.849510 | TGTGGAAAAGATCACGAGTTTAGA | 58.150 | 37.500 | 0.00 | 0.00 | 36.74 | 2.10 |
46 | 47 | 7.746475 | GTGGAAAAGATCACGAGTTTAGAAATG | 59.254 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
112 | 127 | 6.544928 | AAAAACCAGTGAAAAAGTCCAGAT | 57.455 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
117 | 132 | 5.238650 | ACCAGTGAAAAAGTCCAGATAAACG | 59.761 | 40.000 | 0.00 | 0.00 | 0.00 | 3.60 |
123 | 138 | 8.500773 | GTGAAAAAGTCCAGATAAACGAATGTA | 58.499 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
139 | 154 | 7.329588 | ACGAATGTAGAAAGGAAAACAAACT | 57.670 | 32.000 | 0.00 | 0.00 | 0.00 | 2.66 |
140 | 155 | 7.193595 | ACGAATGTAGAAAGGAAAACAAACTG | 58.806 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
153 | 168 | 6.981559 | GGAAAACAAACTGGTGTATAAAAGCA | 59.018 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
154 | 169 | 7.655732 | GGAAAACAAACTGGTGTATAAAAGCAT | 59.344 | 33.333 | 0.00 | 0.00 | 0.00 | 3.79 |
159 | 174 | 3.447229 | ACTGGTGTATAAAAGCATTGCCC | 59.553 | 43.478 | 4.70 | 0.00 | 0.00 | 5.36 |
164 | 179 | 5.507985 | GGTGTATAAAAGCATTGCCCTGATC | 60.508 | 44.000 | 4.70 | 0.00 | 0.00 | 2.92 |
173 | 188 | 2.514824 | GCCCTGATCGGCTGAACC | 60.515 | 66.667 | 0.00 | 0.00 | 46.10 | 3.62 |
175 | 190 | 1.153289 | CCCTGATCGGCTGAACCAG | 60.153 | 63.158 | 16.96 | 16.96 | 39.03 | 4.00 |
177 | 192 | 0.036010 | CCTGATCGGCTGAACCAGTT | 60.036 | 55.000 | 20.27 | 0.00 | 39.03 | 3.16 |
179 | 194 | 2.271800 | CTGATCGGCTGAACCAGTTAC | 58.728 | 52.381 | 16.09 | 0.00 | 39.03 | 2.50 |
182 | 197 | 1.045407 | TCGGCTGAACCAGTTACAGT | 58.955 | 50.000 | 0.00 | 0.00 | 39.03 | 3.55 |
184 | 199 | 2.629137 | TCGGCTGAACCAGTTACAGTAA | 59.371 | 45.455 | 0.00 | 0.00 | 39.03 | 2.24 |
186 | 201 | 3.335579 | GGCTGAACCAGTTACAGTAAGG | 58.664 | 50.000 | 0.00 | 0.00 | 38.86 | 2.69 |
193 | 208 | 6.438108 | TGAACCAGTTACAGTAAGGCTATGTA | 59.562 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
216 | 231 | 0.034337 | TAGGGGTGTGCGTCAGTTTC | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 2.78 |
240 | 255 | 2.906047 | GCCTATAAGTGGCGCAGAG | 58.094 | 57.895 | 10.83 | 0.00 | 41.03 | 3.35 |
253 | 1000 | 0.597637 | CGCAGAGGACGCCGAATAAT | 60.598 | 55.000 | 0.00 | 0.00 | 0.00 | 1.28 |
256 | 1003 | 2.731976 | GCAGAGGACGCCGAATAATAAG | 59.268 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
272 | 1019 | 7.483691 | CGAATAATAAGTGGGTAAAGTTTGTGC | 59.516 | 37.037 | 0.00 | 0.00 | 0.00 | 4.57 |
278 | 1025 | 2.432146 | TGGGTAAAGTTTGTGCATTGCA | 59.568 | 40.909 | 7.38 | 7.38 | 35.60 | 4.08 |
280 | 1027 | 4.064388 | GGGTAAAGTTTGTGCATTGCATT | 58.936 | 39.130 | 15.49 | 6.39 | 41.91 | 3.56 |
320 | 1067 | 5.764192 | AGATGAGCAAGGATTAATCTTCAGC | 59.236 | 40.000 | 14.95 | 14.21 | 0.00 | 4.26 |
321 | 1068 | 5.108187 | TGAGCAAGGATTAATCTTCAGCT | 57.892 | 39.130 | 20.29 | 20.29 | 32.60 | 4.24 |
326 | 1073 | 5.586243 | GCAAGGATTAATCTTCAGCTGTACA | 59.414 | 40.000 | 14.67 | 0.00 | 0.00 | 2.90 |
327 | 1074 | 6.094048 | GCAAGGATTAATCTTCAGCTGTACAA | 59.906 | 38.462 | 14.67 | 0.00 | 0.00 | 2.41 |
338 | 1085 | 8.850454 | TCTTCAGCTGTACAAAATAAAACAAC | 57.150 | 30.769 | 14.67 | 0.00 | 0.00 | 3.32 |
345 | 1092 | 7.856894 | GCTGTACAAAATAAAACAACCGTAGAA | 59.143 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
352 | 1099 | 4.563337 | AAAACAACCGTAGAAGGCTTTC | 57.437 | 40.909 | 0.00 | 0.00 | 33.69 | 2.62 |
356 | 1103 | 3.081804 | CAACCGTAGAAGGCTTTCCAAT | 58.918 | 45.455 | 4.73 | 0.00 | 33.64 | 3.16 |
363 | 1110 | 6.403309 | CCGTAGAAGGCTTTCCAATAAAAGTC | 60.403 | 42.308 | 4.73 | 0.00 | 40.40 | 3.01 |
371 | 1118 | 5.163612 | GCTTTCCAATAAAAGTCTGGCTAGG | 60.164 | 44.000 | 0.00 | 0.00 | 38.30 | 3.02 |
372 | 1119 | 5.514500 | TTCCAATAAAAGTCTGGCTAGGT | 57.486 | 39.130 | 0.00 | 0.00 | 0.00 | 3.08 |
375 | 1122 | 5.104900 | TCCAATAAAAGTCTGGCTAGGTCTC | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 3.36 |
379 | 1126 | 2.614134 | AGTCTGGCTAGGTCTCAGTT | 57.386 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
384 | 1131 | 4.402793 | GTCTGGCTAGGTCTCAGTTGATTA | 59.597 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
385 | 1132 | 5.023452 | TCTGGCTAGGTCTCAGTTGATTAA | 58.977 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
468 | 1218 | 9.558396 | AAAAAGGAAATTTTGCATGAATCTACA | 57.442 | 25.926 | 0.00 | 0.00 | 40.27 | 2.74 |
469 | 1219 | 9.729281 | AAAAGGAAATTTTGCATGAATCTACAT | 57.271 | 25.926 | 0.00 | 0.00 | 39.67 | 2.29 |
472 | 1222 | 8.970020 | AGGAAATTTTGCATGAATCTACATACA | 58.030 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
482 | 1232 | 7.117523 | GCATGAATCTACATACAAGATCTCACC | 59.882 | 40.741 | 0.00 | 0.00 | 32.48 | 4.02 |
483 | 1233 | 6.739112 | TGAATCTACATACAAGATCTCACCG | 58.261 | 40.000 | 0.00 | 0.00 | 32.48 | 4.94 |
500 | 1250 | 3.110358 | CACCGATATTGCGTCGACTTTA | 58.890 | 45.455 | 14.70 | 0.00 | 41.40 | 1.85 |
504 | 1542 | 4.280461 | CGATATTGCGTCGACTTTAGACT | 58.720 | 43.478 | 14.70 | 0.00 | 41.40 | 3.24 |
509 | 1547 | 4.494350 | TGCGTCGACTTTAGACTTAACT | 57.506 | 40.909 | 14.70 | 0.00 | 36.53 | 2.24 |
511 | 1549 | 6.187125 | TGCGTCGACTTTAGACTTAACTAT | 57.813 | 37.500 | 14.70 | 0.00 | 36.53 | 2.12 |
529 | 1567 | 9.719279 | CTTAACTATGTCTTAAGTCTAAGTCGG | 57.281 | 37.037 | 1.63 | 0.00 | 36.63 | 4.79 |
530 | 1568 | 6.134040 | ACTATGTCTTAAGTCTAAGTCGGC | 57.866 | 41.667 | 1.63 | 0.00 | 36.63 | 5.54 |
531 | 1569 | 5.887035 | ACTATGTCTTAAGTCTAAGTCGGCT | 59.113 | 40.000 | 1.63 | 0.00 | 36.63 | 5.52 |
532 | 1570 | 4.436242 | TGTCTTAAGTCTAAGTCGGCTG | 57.564 | 45.455 | 1.63 | 0.00 | 36.63 | 4.85 |
533 | 1571 | 4.077108 | TGTCTTAAGTCTAAGTCGGCTGA | 58.923 | 43.478 | 1.63 | 0.00 | 36.63 | 4.26 |
534 | 1572 | 4.156190 | TGTCTTAAGTCTAAGTCGGCTGAG | 59.844 | 45.833 | 0.00 | 0.00 | 36.63 | 3.35 |
535 | 1573 | 4.395542 | GTCTTAAGTCTAAGTCGGCTGAGA | 59.604 | 45.833 | 0.00 | 0.00 | 36.63 | 3.27 |
536 | 1574 | 5.066764 | GTCTTAAGTCTAAGTCGGCTGAGAT | 59.933 | 44.000 | 7.52 | 0.00 | 34.83 | 2.75 |
537 | 1575 | 5.297278 | TCTTAAGTCTAAGTCGGCTGAGATC | 59.703 | 44.000 | 7.52 | 1.72 | 34.83 | 2.75 |
538 | 1576 | 3.006112 | AGTCTAAGTCGGCTGAGATCA | 57.994 | 47.619 | 7.52 | 0.00 | 34.83 | 2.92 |
590 | 1628 | 4.597004 | TGTAAACCAATTATTACGGGCCA | 58.403 | 39.130 | 4.39 | 0.00 | 35.30 | 5.36 |
591 | 1629 | 4.398673 | TGTAAACCAATTATTACGGGCCAC | 59.601 | 41.667 | 4.39 | 0.00 | 35.30 | 5.01 |
592 | 1630 | 3.375647 | AACCAATTATTACGGGCCACT | 57.624 | 42.857 | 4.39 | 0.00 | 0.00 | 4.00 |
593 | 1631 | 3.375647 | ACCAATTATTACGGGCCACTT | 57.624 | 42.857 | 4.39 | 0.00 | 0.00 | 3.16 |
594 | 1632 | 3.020984 | ACCAATTATTACGGGCCACTTG | 58.979 | 45.455 | 4.39 | 0.00 | 0.00 | 3.16 |
595 | 1633 | 3.020984 | CCAATTATTACGGGCCACTTGT | 58.979 | 45.455 | 4.39 | 0.00 | 0.00 | 3.16 |
596 | 1634 | 3.445805 | CCAATTATTACGGGCCACTTGTT | 59.554 | 43.478 | 4.39 | 0.00 | 0.00 | 2.83 |
597 | 1635 | 4.420168 | CAATTATTACGGGCCACTTGTTG | 58.580 | 43.478 | 4.39 | 0.00 | 0.00 | 3.33 |
598 | 1636 | 2.863132 | TATTACGGGCCACTTGTTGT | 57.137 | 45.000 | 4.39 | 0.00 | 0.00 | 3.32 |
599 | 1637 | 2.863132 | ATTACGGGCCACTTGTTGTA | 57.137 | 45.000 | 4.39 | 0.00 | 0.00 | 2.41 |
600 | 1638 | 2.634815 | TTACGGGCCACTTGTTGTAA | 57.365 | 45.000 | 4.39 | 0.00 | 0.00 | 2.41 |
601 | 1639 | 2.634815 | TACGGGCCACTTGTTGTAAA | 57.365 | 45.000 | 4.39 | 0.00 | 0.00 | 2.01 |
647 | 1702 | 3.558321 | CCCGATTACAGGAACCAAAGACA | 60.558 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
665 | 1720 | 1.134670 | ACATTCTCCGGCTGCTAGTTC | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
736 | 1791 | 2.483188 | CGGCATACTAGTTGGGACTTCC | 60.483 | 54.545 | 0.00 | 0.00 | 37.33 | 3.46 |
749 | 1804 | 3.414700 | CTTCCGACCAGTGCACGC | 61.415 | 66.667 | 12.01 | 1.57 | 0.00 | 5.34 |
771 | 1826 | 1.441729 | GGCCGTCCGATCTGAATCA | 59.558 | 57.895 | 0.00 | 0.00 | 31.76 | 2.57 |
788 | 1843 | 7.097192 | TCTGAATCAAAAACAGCTATCGTACT | 58.903 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
802 | 1857 | 6.092670 | AGCTATCGTACTACGTCAAAGTTGTA | 59.907 | 38.462 | 8.42 | 0.00 | 43.14 | 2.41 |
804 | 1859 | 7.430502 | GCTATCGTACTACGTCAAAGTTGTAAT | 59.569 | 37.037 | 8.42 | 0.00 | 43.14 | 1.89 |
805 | 1860 | 7.731556 | ATCGTACTACGTCAAAGTTGTAATC | 57.268 | 36.000 | 8.42 | 0.00 | 43.14 | 1.75 |
806 | 1861 | 5.790003 | TCGTACTACGTCAAAGTTGTAATCG | 59.210 | 40.000 | 8.42 | 0.00 | 43.14 | 3.34 |
807 | 1862 | 5.002840 | CGTACTACGTCAAAGTTGTAATCGG | 59.997 | 44.000 | 0.00 | 0.00 | 36.74 | 4.18 |
809 | 1864 | 3.116079 | ACGTCAAAGTTGTAATCGGGT | 57.884 | 42.857 | 0.00 | 0.00 | 0.00 | 5.28 |
810 | 1865 | 3.469739 | ACGTCAAAGTTGTAATCGGGTT | 58.530 | 40.909 | 0.00 | 0.00 | 0.00 | 4.11 |
811 | 1866 | 4.630111 | ACGTCAAAGTTGTAATCGGGTTA | 58.370 | 39.130 | 0.00 | 0.00 | 0.00 | 2.85 |
893 | 1951 | 0.858583 | CGCACACGTCAATCAGAACA | 59.141 | 50.000 | 0.00 | 0.00 | 33.53 | 3.18 |
909 | 1967 | 1.199327 | GAACACGATCACGACTCCAGA | 59.801 | 52.381 | 0.00 | 0.00 | 42.66 | 3.86 |
917 | 1976 | 2.037136 | ACGACTCCAGACCGTACGG | 61.037 | 63.158 | 32.22 | 32.22 | 42.03 | 4.02 |
945 | 2027 | 4.021368 | ACCAGTATATAATCACCAGCCGAC | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
958 | 2040 | 0.110486 | AGCCGACACTCCAAAACCAT | 59.890 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1056 | 2214 | 1.847328 | TGGTGCTCCTCGTCATCTTA | 58.153 | 50.000 | 6.34 | 0.00 | 34.23 | 2.10 |
1482 | 2643 | 1.002134 | CGTCAAGAACCAGGGCCAT | 60.002 | 57.895 | 6.18 | 0.00 | 0.00 | 4.40 |
1539 | 2700 | 1.197721 | GTGGAAGGCGTCAACAAGATG | 59.802 | 52.381 | 2.86 | 0.00 | 36.29 | 2.90 |
1549 | 2710 | 0.036164 | CAACAAGATGGTCACCGGGA | 59.964 | 55.000 | 6.32 | 0.00 | 0.00 | 5.14 |
1551 | 2712 | 0.324943 | ACAAGATGGTCACCGGGAAG | 59.675 | 55.000 | 6.32 | 0.00 | 0.00 | 3.46 |
2246 | 3432 | 4.722700 | CTGTTGCAGGGACCGGGG | 62.723 | 72.222 | 6.32 | 0.00 | 0.00 | 5.73 |
2310 | 3497 | 2.203337 | ACCTGCGCCAAGAGCAAA | 60.203 | 55.556 | 4.18 | 0.00 | 44.67 | 3.68 |
2446 | 3699 | 6.975772 | AGCTTTTTGTTTTCATAACGTAGCAA | 59.024 | 30.769 | 0.00 | 0.00 | 0.00 | 3.91 |
2480 | 3737 | 5.962433 | TCCGAGAGTCCTTGTAAATACTTG | 58.038 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
2481 | 3738 | 5.479375 | TCCGAGAGTCCTTGTAAATACTTGT | 59.521 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2482 | 3739 | 6.660521 | TCCGAGAGTCCTTGTAAATACTTGTA | 59.339 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
2520 | 3780 | 7.124147 | GGAGGAATCATTCTTTTTCCAATGGTA | 59.876 | 37.037 | 0.00 | 0.00 | 41.15 | 3.25 |
2673 | 5095 | 8.333984 | TCCTAATATGATCCACGGTAAGAGATA | 58.666 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
2674 | 5096 | 8.407064 | CCTAATATGATCCACGGTAAGAGATAC | 58.593 | 40.741 | 0.00 | 0.00 | 0.00 | 2.24 |
2675 | 5097 | 7.776618 | AATATGATCCACGGTAAGAGATACA | 57.223 | 36.000 | 0.00 | 0.00 | 36.14 | 2.29 |
2676 | 5098 | 5.713792 | ATGATCCACGGTAAGAGATACAG | 57.286 | 43.478 | 0.00 | 0.00 | 36.14 | 2.74 |
2677 | 5099 | 4.533815 | TGATCCACGGTAAGAGATACAGT | 58.466 | 43.478 | 0.00 | 0.00 | 42.63 | 3.55 |
2745 | 6646 | 2.911143 | GCTAGCTAGCTGGGCCAA | 59.089 | 61.111 | 33.71 | 4.87 | 45.62 | 4.52 |
2769 | 6709 | 0.667487 | TGAGCAAAGAGTTCGCCTCG | 60.667 | 55.000 | 0.00 | 0.00 | 45.44 | 4.63 |
2771 | 6711 | 0.249911 | AGCAAAGAGTTCGCCTCGTT | 60.250 | 50.000 | 0.00 | 0.00 | 45.44 | 3.85 |
2893 | 6844 | 0.247460 | CAGGTCCATCGTTCAGAGCA | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2917 | 6871 | 3.851098 | AGCTTCTACTGAAACGACATCC | 58.149 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
2940 | 6898 | 7.565680 | TCCCTGATAATTTGGAGTTTCTAGTC | 58.434 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
2945 | 6903 | 7.552687 | TGATAATTTGGAGTTTCTAGTCGCAAT | 59.447 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
2959 | 6918 | 1.153249 | GCAATAGTACGGCTGGCCA | 60.153 | 57.895 | 4.71 | 4.71 | 35.37 | 5.36 |
2973 | 6932 | 2.481471 | GGCCAACTAATCCGCCAGC | 61.481 | 63.158 | 0.00 | 0.00 | 41.25 | 4.85 |
2977 | 6937 | 3.400599 | AACTAATCCGCCAGCCCCG | 62.401 | 63.158 | 0.00 | 0.00 | 0.00 | 5.73 |
3001 | 6961 | 1.134946 | GCCCGTTGATCCCATCTTTTG | 59.865 | 52.381 | 0.00 | 0.00 | 0.00 | 2.44 |
3002 | 6962 | 2.446435 | CCCGTTGATCCCATCTTTTGT | 58.554 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
3003 | 6963 | 2.423538 | CCCGTTGATCCCATCTTTTGTC | 59.576 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3004 | 6964 | 2.423538 | CCGTTGATCCCATCTTTTGTCC | 59.576 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3005 | 6965 | 3.081061 | CGTTGATCCCATCTTTTGTCCA | 58.919 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
3051 | 10857 | 5.469760 | GGTTTGCCAATGATTTTAGTTTGCT | 59.530 | 36.000 | 0.00 | 0.00 | 34.09 | 3.91 |
3061 | 10867 | 3.488778 | TTTAGTTTGCTACCGTGGGAA | 57.511 | 42.857 | 0.00 | 0.00 | 0.00 | 3.97 |
3119 | 11072 | 9.365311 | CAAATAACGAATAATAAAGGTACGCAG | 57.635 | 33.333 | 0.00 | 0.00 | 0.00 | 5.18 |
3263 | 11246 | 7.803189 | TGTGAAATTTTAGAATCTTTGAGCGAC | 59.197 | 33.333 | 0.00 | 0.00 | 0.00 | 5.19 |
3357 | 11343 | 6.872628 | AGGTGCTTAAGGTGTAAAAGTAAC | 57.127 | 37.500 | 4.29 | 0.00 | 0.00 | 2.50 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
2 | 3 | 9.748708 | CTTTTCCACAATTAATGAACTTCTTCA | 57.251 | 29.630 | 0.00 | 0.00 | 40.77 | 3.02 |
3 | 4 | 9.965824 | TCTTTTCCACAATTAATGAACTTCTTC | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 2.87 |
7 | 8 | 9.696917 | GTGATCTTTTCCACAATTAATGAACTT | 57.303 | 29.630 | 0.00 | 0.00 | 33.72 | 2.66 |
9 | 10 | 8.020819 | TCGTGATCTTTTCCACAATTAATGAAC | 58.979 | 33.333 | 0.00 | 0.00 | 33.13 | 3.18 |
13 | 14 | 7.687941 | ACTCGTGATCTTTTCCACAATTAAT | 57.312 | 32.000 | 0.00 | 0.00 | 33.13 | 1.40 |
15 | 16 | 7.504924 | AAACTCGTGATCTTTTCCACAATTA | 57.495 | 32.000 | 0.00 | 0.00 | 33.13 | 1.40 |
23 | 24 | 9.665264 | AAACATTTCTAAACTCGTGATCTTTTC | 57.335 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
96 | 111 | 7.228706 | ACATTCGTTTATCTGGACTTTTTCACT | 59.771 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
97 | 112 | 7.360361 | ACATTCGTTTATCTGGACTTTTTCAC | 58.640 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
100 | 115 | 8.842358 | TCTACATTCGTTTATCTGGACTTTTT | 57.158 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
105 | 120 | 7.039882 | TCCTTTCTACATTCGTTTATCTGGAC | 58.960 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
110 | 125 | 9.887406 | TTGTTTTCCTTTCTACATTCGTTTATC | 57.113 | 29.630 | 0.00 | 0.00 | 0.00 | 1.75 |
112 | 127 | 9.505995 | GTTTGTTTTCCTTTCTACATTCGTTTA | 57.494 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
117 | 132 | 7.435192 | CACCAGTTTGTTTTCCTTTCTACATTC | 59.565 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
123 | 138 | 8.528044 | TTATACACCAGTTTGTTTTCCTTTCT | 57.472 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
139 | 154 | 3.446873 | CAGGGCAATGCTTTTATACACCA | 59.553 | 43.478 | 4.82 | 0.00 | 0.00 | 4.17 |
140 | 155 | 3.699038 | TCAGGGCAATGCTTTTATACACC | 59.301 | 43.478 | 4.82 | 0.00 | 0.00 | 4.16 |
159 | 174 | 2.271800 | GTAACTGGTTCAGCCGATCAG | 58.728 | 52.381 | 0.00 | 0.00 | 41.21 | 2.90 |
164 | 179 | 2.736144 | TACTGTAACTGGTTCAGCCG | 57.264 | 50.000 | 0.00 | 0.00 | 41.21 | 5.52 |
168 | 183 | 5.247564 | ACATAGCCTTACTGTAACTGGTTCA | 59.752 | 40.000 | 7.44 | 0.00 | 0.00 | 3.18 |
171 | 186 | 6.685620 | GCATACATAGCCTTACTGTAACTGGT | 60.686 | 42.308 | 7.44 | 5.42 | 0.00 | 4.00 |
173 | 188 | 6.516718 | AGCATACATAGCCTTACTGTAACTG | 58.483 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
175 | 190 | 7.091443 | CCTAGCATACATAGCCTTACTGTAAC | 58.909 | 42.308 | 0.00 | 0.00 | 0.00 | 2.50 |
177 | 192 | 5.715279 | CCCTAGCATACATAGCCTTACTGTA | 59.285 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
179 | 194 | 4.081420 | CCCCTAGCATACATAGCCTTACTG | 60.081 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
182 | 197 | 3.838317 | CACCCCTAGCATACATAGCCTTA | 59.162 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
184 | 199 | 2.260822 | CACCCCTAGCATACATAGCCT | 58.739 | 52.381 | 0.00 | 0.00 | 0.00 | 4.58 |
186 | 201 | 2.872038 | GCACACCCCTAGCATACATAGC | 60.872 | 54.545 | 0.00 | 0.00 | 0.00 | 2.97 |
193 | 208 | 2.244117 | CTGACGCACACCCCTAGCAT | 62.244 | 60.000 | 0.00 | 0.00 | 0.00 | 3.79 |
235 | 250 | 2.433868 | TATTATTCGGCGTCCTCTGC | 57.566 | 50.000 | 6.85 | 0.00 | 0.00 | 4.26 |
238 | 253 | 3.057734 | CCACTTATTATTCGGCGTCCTC | 58.942 | 50.000 | 6.85 | 0.00 | 0.00 | 3.71 |
240 | 255 | 2.140717 | CCCACTTATTATTCGGCGTCC | 58.859 | 52.381 | 6.85 | 0.00 | 0.00 | 4.79 |
253 | 1000 | 5.737635 | GCAATGCACAAACTTTACCCACTTA | 60.738 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
256 | 1003 | 2.799978 | GCAATGCACAAACTTTACCCAC | 59.200 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
272 | 1019 | 3.186909 | CCAGTTCATGAGCAATGCAATG | 58.813 | 45.455 | 12.41 | 11.10 | 36.11 | 2.82 |
278 | 1025 | 3.920231 | TCTAGCCAGTTCATGAGCAAT | 57.080 | 42.857 | 12.41 | 0.00 | 0.00 | 3.56 |
280 | 1027 | 2.767960 | TCATCTAGCCAGTTCATGAGCA | 59.232 | 45.455 | 12.41 | 0.00 | 0.00 | 4.26 |
314 | 1061 | 7.096640 | CGGTTGTTTTATTTTGTACAGCTGAAG | 60.097 | 37.037 | 23.35 | 0.00 | 32.04 | 3.02 |
315 | 1062 | 6.693545 | CGGTTGTTTTATTTTGTACAGCTGAA | 59.306 | 34.615 | 23.35 | 3.60 | 32.04 | 3.02 |
320 | 1067 | 9.377383 | CTTCTACGGTTGTTTTATTTTGTACAG | 57.623 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
321 | 1068 | 8.344098 | CCTTCTACGGTTGTTTTATTTTGTACA | 58.656 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
326 | 1073 | 6.644248 | AGCCTTCTACGGTTGTTTTATTTT | 57.356 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
327 | 1074 | 6.644248 | AAGCCTTCTACGGTTGTTTTATTT | 57.356 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
335 | 1082 | 2.178912 | TGGAAAGCCTTCTACGGTTG | 57.821 | 50.000 | 0.00 | 0.00 | 34.31 | 3.77 |
338 | 1085 | 5.414765 | ACTTTTATTGGAAAGCCTTCTACGG | 59.585 | 40.000 | 0.00 | 0.00 | 39.65 | 4.02 |
345 | 1092 | 3.511540 | GCCAGACTTTTATTGGAAAGCCT | 59.488 | 43.478 | 0.00 | 0.00 | 39.65 | 4.58 |
352 | 1099 | 5.104259 | AGACCTAGCCAGACTTTTATTGG | 57.896 | 43.478 | 0.00 | 0.00 | 35.06 | 3.16 |
356 | 1103 | 4.417437 | ACTGAGACCTAGCCAGACTTTTA | 58.583 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
363 | 1110 | 3.902881 | AATCAACTGAGACCTAGCCAG | 57.097 | 47.619 | 0.00 | 0.00 | 0.00 | 4.85 |
385 | 1132 | 9.730705 | TCACTTGATTGAGATTTGATTAAGTCT | 57.269 | 29.630 | 0.00 | 0.00 | 35.80 | 3.24 |
447 | 1197 | 9.585099 | TTGTATGTAGATTCATGCAAAATTTCC | 57.415 | 29.630 | 7.49 | 0.00 | 43.42 | 3.13 |
452 | 1202 | 9.399797 | AGATCTTGTATGTAGATTCATGCAAAA | 57.600 | 29.630 | 10.25 | 0.00 | 44.76 | 2.44 |
453 | 1203 | 8.969260 | AGATCTTGTATGTAGATTCATGCAAA | 57.031 | 30.769 | 10.25 | 0.00 | 44.76 | 3.68 |
454 | 1204 | 8.206189 | TGAGATCTTGTATGTAGATTCATGCAA | 58.794 | 33.333 | 0.00 | 9.09 | 43.87 | 4.08 |
455 | 1205 | 7.654923 | GTGAGATCTTGTATGTAGATTCATGCA | 59.345 | 37.037 | 0.00 | 0.00 | 38.30 | 3.96 |
456 | 1206 | 7.117523 | GGTGAGATCTTGTATGTAGATTCATGC | 59.882 | 40.741 | 0.00 | 0.00 | 32.64 | 4.06 |
457 | 1207 | 7.328005 | CGGTGAGATCTTGTATGTAGATTCATG | 59.672 | 40.741 | 0.00 | 0.00 | 32.64 | 3.07 |
458 | 1208 | 7.231519 | TCGGTGAGATCTTGTATGTAGATTCAT | 59.768 | 37.037 | 0.00 | 0.00 | 32.64 | 2.57 |
459 | 1209 | 6.546034 | TCGGTGAGATCTTGTATGTAGATTCA | 59.454 | 38.462 | 0.00 | 0.00 | 32.64 | 2.57 |
460 | 1210 | 6.971602 | TCGGTGAGATCTTGTATGTAGATTC | 58.028 | 40.000 | 0.00 | 0.00 | 32.64 | 2.52 |
461 | 1211 | 6.961360 | TCGGTGAGATCTTGTATGTAGATT | 57.039 | 37.500 | 0.00 | 0.00 | 32.64 | 2.40 |
462 | 1212 | 8.815565 | ATATCGGTGAGATCTTGTATGTAGAT | 57.184 | 34.615 | 0.00 | 0.00 | 40.66 | 1.98 |
463 | 1213 | 8.515414 | CAATATCGGTGAGATCTTGTATGTAGA | 58.485 | 37.037 | 0.00 | 0.00 | 38.13 | 2.59 |
464 | 1214 | 7.274468 | GCAATATCGGTGAGATCTTGTATGTAG | 59.726 | 40.741 | 0.00 | 0.00 | 42.22 | 2.74 |
465 | 1215 | 7.090808 | GCAATATCGGTGAGATCTTGTATGTA | 58.909 | 38.462 | 0.00 | 0.00 | 42.22 | 2.29 |
466 | 1216 | 5.928839 | GCAATATCGGTGAGATCTTGTATGT | 59.071 | 40.000 | 0.00 | 0.00 | 42.22 | 2.29 |
467 | 1217 | 5.061435 | CGCAATATCGGTGAGATCTTGTATG | 59.939 | 44.000 | 0.00 | 0.00 | 42.22 | 2.39 |
468 | 1218 | 5.164233 | CGCAATATCGGTGAGATCTTGTAT | 58.836 | 41.667 | 0.00 | 0.00 | 42.22 | 2.29 |
469 | 1219 | 4.037565 | ACGCAATATCGGTGAGATCTTGTA | 59.962 | 41.667 | 0.00 | 0.00 | 42.22 | 2.41 |
472 | 1222 | 3.643763 | GACGCAATATCGGTGAGATCTT | 58.356 | 45.455 | 0.00 | 0.00 | 40.66 | 2.40 |
474 | 1224 | 1.979469 | CGACGCAATATCGGTGAGATC | 59.021 | 52.381 | 0.00 | 0.00 | 40.66 | 2.75 |
482 | 1232 | 4.280461 | AGTCTAAAGTCGACGCAATATCG | 58.720 | 43.478 | 10.46 | 0.00 | 41.00 | 2.92 |
483 | 1233 | 7.431668 | AGTTAAGTCTAAAGTCGACGCAATATC | 59.568 | 37.037 | 10.46 | 0.01 | 36.53 | 1.63 |
504 | 1542 | 8.186821 | GCCGACTTAGACTTAAGACATAGTTAA | 58.813 | 37.037 | 10.09 | 0.00 | 38.88 | 2.01 |
509 | 1547 | 5.884232 | TCAGCCGACTTAGACTTAAGACATA | 59.116 | 40.000 | 10.09 | 0.00 | 38.88 | 2.29 |
511 | 1549 | 4.077108 | TCAGCCGACTTAGACTTAAGACA | 58.923 | 43.478 | 10.09 | 0.00 | 38.88 | 3.41 |
518 | 1556 | 2.948979 | CTGATCTCAGCCGACTTAGACT | 59.051 | 50.000 | 0.00 | 0.00 | 37.15 | 3.24 |
519 | 1557 | 3.347958 | CTGATCTCAGCCGACTTAGAC | 57.652 | 52.381 | 0.00 | 0.00 | 37.15 | 2.59 |
581 | 1619 | 2.634815 | TTACAACAAGTGGCCCGTAA | 57.365 | 45.000 | 0.00 | 0.00 | 0.00 | 3.18 |
582 | 1620 | 2.634815 | TTTACAACAAGTGGCCCGTA | 57.365 | 45.000 | 0.00 | 0.00 | 0.00 | 4.02 |
583 | 1621 | 1.765230 | TTTTACAACAAGTGGCCCGT | 58.235 | 45.000 | 0.00 | 0.00 | 0.00 | 5.28 |
584 | 1622 | 2.873133 | TTTTTACAACAAGTGGCCCG | 57.127 | 45.000 | 0.00 | 0.00 | 0.00 | 6.13 |
604 | 1642 | 9.768662 | ATCGGGTTACAACGTAAATTTATCTAT | 57.231 | 29.630 | 0.31 | 0.00 | 0.00 | 1.98 |
606 | 1644 | 8.496707 | AATCGGGTTACAACGTAAATTTATCT | 57.503 | 30.769 | 0.31 | 0.00 | 0.00 | 1.98 |
607 | 1645 | 9.636965 | GTAATCGGGTTACAACGTAAATTTATC | 57.363 | 33.333 | 6.29 | 0.00 | 41.87 | 1.75 |
635 | 1679 | 2.084546 | CCGGAGAATGTCTTTGGTTCC | 58.915 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
647 | 1702 | 0.103208 | CGAACTAGCAGCCGGAGAAT | 59.897 | 55.000 | 5.05 | 0.00 | 0.00 | 2.40 |
788 | 1843 | 4.255833 | ACCCGATTACAACTTTGACGTA | 57.744 | 40.909 | 0.00 | 0.00 | 0.00 | 3.57 |
809 | 1864 | 2.232941 | GACCTCAGATCCAACGGTGTAA | 59.767 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
810 | 1865 | 1.822990 | GACCTCAGATCCAACGGTGTA | 59.177 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
811 | 1866 | 0.608640 | GACCTCAGATCCAACGGTGT | 59.391 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
871 | 1929 | 0.388520 | TCTGATTGACGTGTGCGAGG | 60.389 | 55.000 | 0.00 | 0.00 | 42.00 | 4.63 |
877 | 1935 | 2.502213 | TCGTGTTCTGATTGACGTGT | 57.498 | 45.000 | 0.00 | 0.00 | 33.56 | 4.49 |
893 | 1951 | 1.645704 | CGGTCTGGAGTCGTGATCGT | 61.646 | 60.000 | 8.05 | 0.00 | 38.33 | 3.73 |
909 | 1967 | 2.769652 | TACTGGTCTGGCCGTACGGT | 62.770 | 60.000 | 33.34 | 14.25 | 41.21 | 4.83 |
917 | 1976 | 5.482908 | CTGGTGATTATATACTGGTCTGGC | 58.517 | 45.833 | 0.00 | 0.00 | 0.00 | 4.85 |
945 | 2027 | 4.032900 | CGATCGACTTATGGTTTTGGAGTG | 59.967 | 45.833 | 10.26 | 0.00 | 0.00 | 3.51 |
1539 | 2700 | 3.692406 | ACGAGCTTCCCGGTGACC | 61.692 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
2409 | 3642 | 8.308207 | TGAAAACAAAAAGCTGTAACCTAAACT | 58.692 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
2616 | 4944 | 8.321353 | TGACCATGATCATATACCATTCCTTAC | 58.679 | 37.037 | 8.15 | 0.00 | 0.00 | 2.34 |
2623 | 4951 | 8.489489 | GGAACTATGACCATGATCATATACCAT | 58.511 | 37.037 | 10.32 | 11.47 | 40.08 | 3.55 |
2673 | 5095 | 3.791320 | TCACCTCCCTCAATTCTACTGT | 58.209 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
2674 | 5096 | 4.826274 | TTCACCTCCCTCAATTCTACTG | 57.174 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
2675 | 5097 | 4.846940 | AGTTTCACCTCCCTCAATTCTACT | 59.153 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2676 | 5098 | 5.167303 | AGTTTCACCTCCCTCAATTCTAC | 57.833 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2677 | 5099 | 5.783360 | TGTAGTTTCACCTCCCTCAATTCTA | 59.217 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2745 | 6646 | 2.421424 | GGCGAACTCTTTGCTCATGAAT | 59.579 | 45.455 | 0.00 | 0.00 | 40.04 | 2.57 |
2769 | 6709 | 8.474006 | AAGTGGTTTTTGAACATGAGTTTAAC | 57.526 | 30.769 | 0.00 | 0.00 | 38.30 | 2.01 |
2771 | 6711 | 7.547370 | CCAAAGTGGTTTTTGAACATGAGTTTA | 59.453 | 33.333 | 0.00 | 0.00 | 39.79 | 2.01 |
2893 | 6844 | 6.043411 | GGATGTCGTTTCAGTAGAAGCTATT | 58.957 | 40.000 | 0.00 | 0.00 | 34.71 | 1.73 |
2917 | 6871 | 6.018669 | GCGACTAGAAACTCCAAATTATCAGG | 60.019 | 42.308 | 0.00 | 0.00 | 0.00 | 3.86 |
2940 | 6898 | 2.244651 | GGCCAGCCGTACTATTGCG | 61.245 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
2945 | 6903 | 1.559368 | TTAGTTGGCCAGCCGTACTA | 58.441 | 50.000 | 16.95 | 12.91 | 39.42 | 1.82 |
2959 | 6918 | 2.595655 | GGGGCTGGCGGATTAGTT | 59.404 | 61.111 | 0.00 | 0.00 | 0.00 | 2.24 |
2984 | 6944 | 3.081061 | TGGACAAAAGATGGGATCAACG | 58.919 | 45.455 | 0.00 | 0.00 | 0.00 | 4.10 |
3051 | 10857 | 6.052405 | ACACATACTTAAATTCCCACGGTA | 57.948 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
3119 | 11072 | 9.617523 | ATCCAAATATTTCAACATTTCAATCCC | 57.382 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.