Multiple sequence alignment - TraesCS2A01G545800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G545800 chr2A 100.000 4719 0 0 1 4719 754570314 754565596 0.000000e+00 8715.0
1 TraesCS2A01G545800 chr2A 88.118 850 49 20 1 828 754659718 754658899 0.000000e+00 963.0
2 TraesCS2A01G545800 chr2A 88.201 695 73 5 910 1598 754656432 754655741 0.000000e+00 821.0
3 TraesCS2A01G545800 chr2A 90.141 284 16 3 4436 4719 583143809 583144080 4.490000e-95 359.0
4 TraesCS2A01G545800 chr2A 87.153 288 33 4 4434 4719 149963698 149963413 1.640000e-84 324.0
5 TraesCS2A01G545800 chr2A 81.679 262 48 0 4445 4706 716426191 716426452 7.950000e-53 219.0
6 TraesCS2A01G545800 chr2A 89.744 78 8 0 235 312 754659265 754659188 3.000000e-17 100.0
7 TraesCS2A01G545800 chr2A 100.000 46 0 0 867 912 754658894 754658849 8.410000e-13 86.1
8 TraesCS2A01G545800 chr2B 91.490 3349 193 39 1018 4352 765298055 765294785 0.000000e+00 4521.0
9 TraesCS2A01G545800 chr2B 85.829 621 64 7 1012 1630 765471656 765472254 5.150000e-179 638.0
10 TraesCS2A01G545800 chr2B 84.324 370 35 8 451 800 765298581 765298215 1.630000e-89 340.0
11 TraesCS2A01G545800 chr2B 93.151 73 2 2 208 278 765298609 765298538 2.320000e-18 104.0
12 TraesCS2A01G545800 chr2D 90.890 2854 206 32 1110 3949 623392946 623390133 0.000000e+00 3781.0
13 TraesCS2A01G545800 chr2D 73.858 941 224 20 2496 3428 380090220 380091146 5.810000e-94 355.0
14 TraesCS2A01G545800 chr2D 87.461 319 25 7 1 315 623406105 623405798 2.090000e-93 353.0
15 TraesCS2A01G545800 chr2D 77.624 362 35 17 451 800 623405880 623405553 1.350000e-40 178.0
16 TraesCS2A01G545800 chr2D 73.029 241 52 10 4435 4674 20174672 20174444 6.550000e-09 73.1
17 TraesCS2A01G545800 chr1A 82.746 2469 374 27 1117 3572 585354218 585351789 0.000000e+00 2152.0
18 TraesCS2A01G545800 chr1A 74.178 608 136 17 2509 3101 8328698 8329299 2.840000e-57 233.0
19 TraesCS2A01G545800 chr1D 83.459 2122 318 15 1117 3230 487331147 487329051 0.000000e+00 1943.0
20 TraesCS2A01G545800 chr1D 81.928 332 47 10 3242 3572 487324720 487324401 7.780000e-68 268.0
21 TraesCS2A01G545800 chr1D 72.994 648 158 13 2509 3146 6900019 6900659 1.330000e-50 211.0
22 TraesCS2A01G545800 chr7A 96.797 281 9 0 4439 4719 69564697 69564417 1.990000e-128 470.0
23 TraesCS2A01G545800 chr7A 95.730 281 12 0 4439 4719 69600545 69600265 2.000000e-123 453.0
24 TraesCS2A01G545800 chr7A 91.228 285 25 0 4435 4719 733748915 733749199 5.730000e-104 388.0
25 TraesCS2A01G545800 chr7A 89.046 283 30 1 4438 4719 161215861 161215579 2.700000e-92 350.0
26 TraesCS2A01G545800 chr3A 84.946 279 29 4 4441 4719 710896739 710897004 2.160000e-68 270.0
27 TraesCS2A01G545800 chr5B 74.679 624 134 17 2544 3149 13774539 13773922 6.060000e-64 255.0
28 TraesCS2A01G545800 chr5B 73.333 645 161 10 2509 3146 549549535 549550175 1.320000e-55 228.0
29 TraesCS2A01G545800 chrUn 87.500 200 25 0 4444 4643 18207198 18207397 1.020000e-56 231.0
30 TraesCS2A01G545800 chrUn 74.853 509 120 4 2545 3049 88844582 88845086 1.710000e-54 224.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G545800 chr2A 754565596 754570314 4718 True 8715.000 8715 100.00000 1 4719 1 chr2A.!!$R2 4718
1 TraesCS2A01G545800 chr2A 754655741 754659718 3977 True 492.525 963 91.51575 1 1598 4 chr2A.!!$R3 1597
2 TraesCS2A01G545800 chr2B 765294785 765298609 3824 True 1655.000 4521 89.65500 208 4352 3 chr2B.!!$R1 4144
3 TraesCS2A01G545800 chr2B 765471656 765472254 598 False 638.000 638 85.82900 1012 1630 1 chr2B.!!$F1 618
4 TraesCS2A01G545800 chr2D 623390133 623392946 2813 True 3781.000 3781 90.89000 1110 3949 1 chr2D.!!$R2 2839
5 TraesCS2A01G545800 chr2D 380090220 380091146 926 False 355.000 355 73.85800 2496 3428 1 chr2D.!!$F1 932
6 TraesCS2A01G545800 chr2D 623405553 623406105 552 True 265.500 353 82.54250 1 800 2 chr2D.!!$R3 799
7 TraesCS2A01G545800 chr1A 585351789 585354218 2429 True 2152.000 2152 82.74600 1117 3572 1 chr1A.!!$R1 2455
8 TraesCS2A01G545800 chr1A 8328698 8329299 601 False 233.000 233 74.17800 2509 3101 1 chr1A.!!$F1 592
9 TraesCS2A01G545800 chr1D 487329051 487331147 2096 True 1943.000 1943 83.45900 1117 3230 1 chr1D.!!$R2 2113
10 TraesCS2A01G545800 chr1D 6900019 6900659 640 False 211.000 211 72.99400 2509 3146 1 chr1D.!!$F1 637
11 TraesCS2A01G545800 chr5B 13773922 13774539 617 True 255.000 255 74.67900 2544 3149 1 chr5B.!!$R1 605
12 TraesCS2A01G545800 chr5B 549549535 549550175 640 False 228.000 228 73.33300 2509 3146 1 chr5B.!!$F1 637
13 TraesCS2A01G545800 chrUn 88844582 88845086 504 False 224.000 224 74.85300 2545 3049 1 chrUn.!!$F2 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
336 351 0.102120 CTGAGATCAGGTGACTCGCC 59.898 60.0 0.0 0.0 40.21 5.54 F
1419 3924 0.030638 CTGGTCCACAAAAGCCAACG 59.969 55.0 0.0 0.0 0.00 4.10 F
2062 4570 0.035630 CCTCAAGACTGGGAGCTTGG 60.036 60.0 0.0 0.0 41.31 3.61 F
2066 4574 0.398318 AAGACTGGGAGCTTGGTGAC 59.602 55.0 0.0 0.0 0.00 3.67 F
3263 5786 0.246086 TGGATGCGAAATTGTTGGGC 59.754 50.0 0.0 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 4262 0.329596 ATTTCTGGCCCACACTCTCC 59.670 55.0 0.0 0.0 0.00 3.71 R
2966 5489 0.243636 CCATTCCAAAGTCCGCAACC 59.756 55.0 0.0 0.0 0.00 3.77 R
3263 5786 0.249238 CCTCCTCCAGATTCGCTTCG 60.249 60.0 0.0 0.0 0.00 3.79 R
3676 6204 0.318614 GACATTGTTGCACCAACCGG 60.319 55.0 0.0 0.0 42.96 5.28 R
4399 6946 0.103208 CGGATCTGGACTGTGCCTAC 59.897 60.0 0.0 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 0.176680 ACGGCATGAGTGGAGACATC 59.823 55.000 0.00 0.00 46.14 3.06
77 78 4.936891 ACATCTTCTTGTTTTTGCTGGAC 58.063 39.130 0.00 0.00 0.00 4.02
191 194 6.161381 TCGACAAGTTTATACTCCAGGAAAC 58.839 40.000 0.00 0.00 31.99 2.78
283 298 6.509517 CGATGACCAACCAACAGTAAATATCG 60.510 42.308 0.00 0.00 0.00 2.92
290 305 8.455682 CCAACCAACAGTAAATATCGTTAACAT 58.544 33.333 6.39 1.49 0.00 2.71
303 318 5.068234 TCGTTAACATGTCGAGAAGGATT 57.932 39.130 6.39 0.00 0.00 3.01
317 332 0.250513 AGGATTCCTCAACAGCGGAC 59.749 55.000 0.00 0.00 0.00 4.79
336 351 0.102120 CTGAGATCAGGTGACTCGCC 59.898 60.000 0.00 0.00 40.21 5.54
337 352 0.611896 TGAGATCAGGTGACTCGCCA 60.612 55.000 11.31 0.00 40.21 5.69
347 372 4.003788 ACTCGCCAAGTCACCGGG 62.004 66.667 6.32 0.00 30.02 5.73
348 373 3.691342 CTCGCCAAGTCACCGGGA 61.691 66.667 6.32 0.00 0.00 5.14
360 385 4.272100 CCGGGAAACAGTACGGTG 57.728 61.111 0.00 0.00 41.34 4.94
362 387 0.668401 CCGGGAAACAGTACGGTGAC 60.668 60.000 0.00 0.00 41.34 3.67
369 397 0.611714 ACAGTACGGTGACATTCCCC 59.388 55.000 0.00 0.00 0.00 4.81
376 404 0.323451 GGTGACATTCCCCCTTGTCC 60.323 60.000 0.00 0.00 41.22 4.02
396 424 4.999950 GTCCACACAGTCAGATCAAGAATT 59.000 41.667 0.00 0.00 0.00 2.17
401 429 7.388776 CCACACAGTCAGATCAAGAATTAAGAA 59.611 37.037 0.00 0.00 0.00 2.52
402 430 8.777413 CACACAGTCAGATCAAGAATTAAGAAA 58.223 33.333 0.00 0.00 0.00 2.52
403 431 8.778358 ACACAGTCAGATCAAGAATTAAGAAAC 58.222 33.333 0.00 0.00 0.00 2.78
404 432 8.777413 CACAGTCAGATCAAGAATTAAGAAACA 58.223 33.333 0.00 0.00 0.00 2.83
405 433 9.342308 ACAGTCAGATCAAGAATTAAGAAACAA 57.658 29.630 0.00 0.00 0.00 2.83
440 469 3.259064 ACGGTGACATTCTTATCCAACG 58.741 45.455 0.00 0.00 42.84 4.10
456 485 1.132262 CAACGGCCATGTTACATCACC 59.868 52.381 2.24 0.00 0.00 4.02
464 493 2.760634 TGTTACATCACCGATGCTGT 57.239 45.000 3.90 0.00 43.15 4.40
465 494 3.052455 TGTTACATCACCGATGCTGTT 57.948 42.857 0.00 0.00 43.15 3.16
541 579 1.320507 TCAACAGCATGCATGTGTGT 58.679 45.000 26.79 24.88 42.53 3.72
542 580 1.001158 TCAACAGCATGCATGTGTGTG 60.001 47.619 27.30 23.78 42.53 3.82
548 586 1.135603 GCATGCATGTGTGTGTACCTG 60.136 52.381 26.79 0.00 0.00 4.00
579 617 3.119245 GGTAGTCACCGATTAGCTTGACA 60.119 47.826 14.63 0.94 40.75 3.58
581 619 3.589988 AGTCACCGATTAGCTTGACAAG 58.410 45.455 14.63 11.02 40.75 3.16
618 657 9.979578 AATACAAAGTTGCAGTTCAAATAATCA 57.020 25.926 0.00 0.00 36.26 2.57
761 816 2.345244 CCGACCTGCTGCAGTCTT 59.655 61.111 26.41 11.66 0.00 3.01
770 825 1.302033 CTGCAGTCTTCGGCAACCT 60.302 57.895 5.25 0.00 43.28 3.50
791 846 2.048503 CACTCGGTTCCCACGGAC 60.049 66.667 0.00 0.00 0.00 4.79
829 884 2.438434 GCGCCAGTTGCCCACTAT 60.438 61.111 0.00 0.00 36.24 2.12
831 886 2.764314 CGCCAGTTGCCCACTATGC 61.764 63.158 0.00 0.00 36.24 3.14
832 887 1.379044 GCCAGTTGCCCACTATGCT 60.379 57.895 0.00 0.00 32.76 3.79
833 888 1.379642 GCCAGTTGCCCACTATGCTC 61.380 60.000 0.00 0.00 32.76 4.26
834 889 0.254178 CCAGTTGCCCACTATGCTCT 59.746 55.000 0.00 0.00 32.76 4.09
835 890 1.376543 CAGTTGCCCACTATGCTCTG 58.623 55.000 0.00 0.00 32.76 3.35
836 891 0.987294 AGTTGCCCACTATGCTCTGT 59.013 50.000 0.00 0.00 31.97 3.41
839 894 1.866015 TGCCCACTATGCTCTGTAGT 58.134 50.000 0.00 0.00 32.80 2.73
840 895 1.482182 TGCCCACTATGCTCTGTAGTG 59.518 52.381 6.37 6.37 45.41 2.74
845 900 4.983671 CACTATGCTCTGTAGTGGTACA 57.016 45.455 5.59 0.00 43.27 2.90
846 901 5.324784 CACTATGCTCTGTAGTGGTACAA 57.675 43.478 5.59 0.00 44.16 2.41
847 902 5.103000 CACTATGCTCTGTAGTGGTACAAC 58.897 45.833 5.59 0.00 44.16 3.32
848 903 2.717580 TGCTCTGTAGTGGTACAACG 57.282 50.000 0.00 0.00 44.16 4.10
851 906 2.985139 GCTCTGTAGTGGTACAACGAAC 59.015 50.000 0.00 0.00 44.16 3.95
852 907 3.231965 CTCTGTAGTGGTACAACGAACG 58.768 50.000 0.00 0.00 44.16 3.95
854 909 0.704551 GTAGTGGTACAACGAACGCG 59.295 55.000 3.53 3.53 44.16 6.01
856 911 3.037249 TGGTACAACGAACGCGGC 61.037 61.111 12.47 0.04 43.17 6.53
857 912 3.781162 GGTACAACGAACGCGGCC 61.781 66.667 12.47 0.00 43.17 6.13
858 913 3.037249 GTACAACGAACGCGGCCA 61.037 61.111 12.47 0.00 43.17 5.36
860 915 3.502990 TACAACGAACGCGGCCAGT 62.503 57.895 12.47 0.00 43.17 4.00
861 916 4.368808 CAACGAACGCGGCCAGTG 62.369 66.667 12.47 4.96 43.17 3.66
863 918 4.595538 ACGAACGCGGCCAGTGAA 62.596 61.111 12.47 0.00 43.17 3.18
864 919 4.072088 CGAACGCGGCCAGTGAAC 62.072 66.667 12.47 7.04 0.00 3.18
865 920 2.665185 GAACGCGGCCAGTGAACT 60.665 61.111 12.47 0.00 0.00 3.01
982 3458 3.090037 GCGTCTCTTCTATATAGGGGCA 58.910 50.000 9.89 0.00 0.00 5.36
983 3459 3.510360 GCGTCTCTTCTATATAGGGGCAA 59.490 47.826 9.89 0.00 0.00 4.52
1006 3482 1.000060 CCATTTCCAAGCACACCACAG 60.000 52.381 0.00 0.00 0.00 3.66
1007 3483 0.675633 ATTTCCAAGCACACCACAGC 59.324 50.000 0.00 0.00 0.00 4.40
1010 3486 2.333938 CAAGCACACCACAGCAGC 59.666 61.111 0.00 0.00 0.00 5.25
1034 3516 4.019771 AGTCCTCCACATTCTTCTTCTTCC 60.020 45.833 0.00 0.00 0.00 3.46
1043 3525 4.559862 TTCTTCTTCTTCCTCCACCATC 57.440 45.455 0.00 0.00 0.00 3.51
1060 3542 1.142262 CATCCATCCAGCCATGTCTCA 59.858 52.381 0.00 0.00 0.00 3.27
1065 3547 0.986527 TCCAGCCATGTCTCATGTGT 59.013 50.000 8.57 0.00 0.00 3.72
1093 3582 1.411977 CGGACTTCTCCTGCTCATCAT 59.588 52.381 0.00 0.00 33.79 2.45
1098 3587 1.326328 TCTCCTGCTCATCATCCTCG 58.674 55.000 0.00 0.00 0.00 4.63
1100 3589 1.894466 CTCCTGCTCATCATCCTCGAT 59.106 52.381 0.00 0.00 0.00 3.59
1419 3924 0.030638 CTGGTCCACAAAAGCCAACG 59.969 55.000 0.00 0.00 0.00 4.10
1422 3927 2.354539 CCACAAAAGCCAACGCCG 60.355 61.111 0.00 0.00 34.57 6.46
1456 3961 4.544689 CGCCGCTCTCCTCGACAG 62.545 72.222 0.00 0.00 0.00 3.51
1469 3974 0.179067 TCGACAGCGGAAACCTTGTT 60.179 50.000 0.00 0.00 38.28 2.83
1504 4009 2.461110 GCGCGTCCAATTCGTCCAT 61.461 57.895 8.43 0.00 0.00 3.41
1506 4011 0.446222 CGCGTCCAATTCGTCCATTT 59.554 50.000 0.00 0.00 0.00 2.32
1641 4146 1.613317 CCAGACTCCCGGCATGTACA 61.613 60.000 0.00 0.00 0.00 2.90
1754 4262 2.355756 CCAATACTTCAGCAACATCCCG 59.644 50.000 0.00 0.00 0.00 5.14
1760 4268 0.904865 TCAGCAACATCCCGGAGAGT 60.905 55.000 0.73 0.00 0.00 3.24
1766 4274 3.083997 ATCCCGGAGAGTGTGGGC 61.084 66.667 0.73 0.00 42.98 5.36
1787 4295 2.291153 CCAGAAATGGCTCTCCCTTCAA 60.291 50.000 0.00 0.00 0.00 2.69
1871 4379 0.249489 GCGGCATAATGGACGTCTCT 60.249 55.000 16.46 2.70 42.62 3.10
1890 4398 2.373169 TCTGGTCAAATGAAGGTGCTCT 59.627 45.455 0.00 0.00 0.00 4.09
1904 4412 1.118965 TGCTCTTGTGGTTCGAGGGA 61.119 55.000 0.00 0.00 29.56 4.20
1922 4430 2.621998 GGGATCATCACAAGATTGGCAG 59.378 50.000 0.00 0.00 30.20 4.85
1991 4499 1.071471 CCCTTTCACGGTCTGCAGT 59.929 57.895 14.67 0.00 0.00 4.40
2062 4570 0.035630 CCTCAAGACTGGGAGCTTGG 60.036 60.000 0.00 0.00 41.31 3.61
2066 4574 0.398318 AAGACTGGGAGCTTGGTGAC 59.602 55.000 0.00 0.00 0.00 3.67
2110 4618 5.483685 AATACTCCACTCTACTGCAACAA 57.516 39.130 0.00 0.00 0.00 2.83
2116 4624 3.002656 CCACTCTACTGCAACAACAACAG 59.997 47.826 0.00 0.00 37.45 3.16
2119 4627 3.013219 TCTACTGCAACAACAACAGCAA 58.987 40.909 0.00 0.00 36.44 3.91
2120 4628 1.994916 ACTGCAACAACAACAGCAAC 58.005 45.000 0.00 0.00 36.44 4.17
2123 4631 0.646895 GCAACAACAACAGCAACAGC 59.353 50.000 0.00 0.00 0.00 4.40
2126 4634 1.176527 ACAACAACAGCAACAGCAGT 58.823 45.000 0.00 0.00 0.00 4.40
2129 4637 1.314534 ACAACAGCAACAGCAGTGCA 61.315 50.000 19.20 0.00 0.00 4.57
2131 4639 2.050351 CAGCAACAGCAGTGCAGC 60.050 61.111 19.20 15.04 0.00 5.25
2133 4641 4.695231 GCAACAGCAGTGCAGCCG 62.695 66.667 19.20 5.13 34.23 5.52
2134 4642 2.974148 CAACAGCAGTGCAGCCGA 60.974 61.111 19.20 0.00 34.23 5.54
2135 4643 2.033141 AACAGCAGTGCAGCCGAT 59.967 55.556 19.20 0.00 34.23 4.18
2171 4679 5.923733 AGTTCTACCCTATGACTTCTGTG 57.076 43.478 0.00 0.00 0.00 3.66
2180 4688 2.708216 TGACTTCTGTGCAACTTCCA 57.292 45.000 0.00 0.00 38.04 3.53
2331 4839 0.938713 TGTTCGGCAACAAGGTAACG 59.061 50.000 0.94 0.00 39.69 3.18
2367 4875 0.947244 CCTCGCTGCAAAAGAAGTGT 59.053 50.000 0.00 0.00 0.00 3.55
2453 4961 4.218417 GCTTTGGGTTTGATCTTTCTGCTA 59.782 41.667 0.00 0.00 0.00 3.49
2630 5141 0.867753 GTGACTCGACAGCCATAGCG 60.868 60.000 0.00 0.00 46.67 4.26
2816 5333 3.149196 TCACCATCTCTTCCAAAGCAAC 58.851 45.455 0.00 0.00 0.00 4.17
2819 5336 1.536766 CATCTCTTCCAAAGCAACGCA 59.463 47.619 0.00 0.00 0.00 5.24
2820 5337 1.896220 TCTCTTCCAAAGCAACGCAT 58.104 45.000 0.00 0.00 0.00 4.73
2966 5489 5.069781 CCTAGATGGGTCTTTCACTCCTAAG 59.930 48.000 0.00 0.00 35.87 2.18
3083 5606 2.203800 TTAGCGGAACTGCTATCACG 57.796 50.000 14.78 0.00 46.19 4.35
3224 5747 2.104770 TTGCGCGCAGTCTTGTTGAG 62.105 55.000 34.25 0.00 0.00 3.02
3263 5786 0.246086 TGGATGCGAAATTGTTGGGC 59.754 50.000 0.00 0.00 0.00 5.36
3338 5861 7.765819 TGTATTCAAGATGATGAGTTTGATCGT 59.234 33.333 0.00 0.00 30.45 3.73
3356 5879 2.753452 TCGTCCTACAATGAGTGAGGTC 59.247 50.000 0.00 0.00 0.00 3.85
3431 5954 3.754965 ACTTCAAGCTATTGCAGGACAA 58.245 40.909 1.12 0.00 44.01 3.18
3446 5969 5.107133 GCAGGACAATCAAATCCAAAGATG 58.893 41.667 0.00 0.00 37.47 2.90
3453 5976 7.486647 ACAATCAAATCCAAAGATGATGTAGC 58.513 34.615 0.00 0.00 33.06 3.58
3489 6013 8.467598 GGATTCTGGTTAAATCTCCCTTTTTAC 58.532 37.037 0.00 0.00 34.29 2.01
3500 6024 6.442541 TCTCCCTTTTTACATGGTAGTTGA 57.557 37.500 0.00 0.00 0.00 3.18
3501 6025 6.472887 TCTCCCTTTTTACATGGTAGTTGAG 58.527 40.000 0.00 0.00 0.00 3.02
3502 6026 5.007682 TCCCTTTTTACATGGTAGTTGAGC 58.992 41.667 0.00 0.00 0.00 4.26
3503 6027 5.010282 CCCTTTTTACATGGTAGTTGAGCT 58.990 41.667 0.00 0.00 0.00 4.09
3512 6036 3.268023 GGTAGTTGAGCTGCCTATTGT 57.732 47.619 0.00 0.00 45.19 2.71
3525 6053 6.211384 AGCTGCCTATTGTTTTTCCTTTGTAT 59.789 34.615 0.00 0.00 0.00 2.29
3526 6054 6.311200 GCTGCCTATTGTTTTTCCTTTGTATG 59.689 38.462 0.00 0.00 0.00 2.39
3527 6055 6.162777 TGCCTATTGTTTTTCCTTTGTATGC 58.837 36.000 0.00 0.00 0.00 3.14
3528 6056 6.014669 TGCCTATTGTTTTTCCTTTGTATGCT 60.015 34.615 0.00 0.00 0.00 3.79
3529 6057 7.177568 TGCCTATTGTTTTTCCTTTGTATGCTA 59.822 33.333 0.00 0.00 0.00 3.49
3530 6058 7.488150 GCCTATTGTTTTTCCTTTGTATGCTAC 59.512 37.037 0.00 0.00 0.00 3.58
3531 6059 8.519526 CCTATTGTTTTTCCTTTGTATGCTACA 58.480 33.333 0.00 0.00 36.79 2.74
3532 6060 9.559958 CTATTGTTTTTCCTTTGTATGCTACAG 57.440 33.333 0.00 0.00 40.24 2.74
3676 6204 2.448219 GCGCTCATGCTTTGATCTTTC 58.552 47.619 0.00 0.00 36.97 2.62
3681 6209 3.420893 TCATGCTTTGATCTTTCCGGTT 58.579 40.909 0.00 0.00 0.00 4.44
3690 6218 0.394488 TCTTTCCGGTTGGTGCAACA 60.394 50.000 0.00 0.00 45.11 3.33
3697 6225 1.202348 CGGTTGGTGCAACAATGTCAA 60.202 47.619 22.12 0.00 45.11 3.18
3705 6233 4.083537 GGTGCAACAATGTCAAGATACGAA 60.084 41.667 0.00 0.00 39.98 3.85
3706 6234 5.391950 GGTGCAACAATGTCAAGATACGAAT 60.392 40.000 0.00 0.00 39.98 3.34
3707 6235 5.734498 GTGCAACAATGTCAAGATACGAATC 59.266 40.000 0.00 0.00 36.32 2.52
3708 6236 5.411053 TGCAACAATGTCAAGATACGAATCA 59.589 36.000 0.00 0.00 34.28 2.57
3709 6237 6.093909 TGCAACAATGTCAAGATACGAATCAT 59.906 34.615 0.00 0.00 34.28 2.45
3710 6238 6.412943 GCAACAATGTCAAGATACGAATCATG 59.587 38.462 0.00 0.00 34.28 3.07
3711 6239 7.466805 CAACAATGTCAAGATACGAATCATGT 58.533 34.615 0.00 0.00 33.51 3.21
3712 6240 7.615582 ACAATGTCAAGATACGAATCATGTT 57.384 32.000 0.00 0.00 33.51 2.71
3713 6241 8.716646 ACAATGTCAAGATACGAATCATGTTA 57.283 30.769 0.00 0.00 33.51 2.41
3714 6242 9.161629 ACAATGTCAAGATACGAATCATGTTAA 57.838 29.630 0.00 0.00 33.51 2.01
3727 6262 6.624917 CGAATCATGTTAATGTTCAGTTAGCG 59.375 38.462 0.00 0.00 35.15 4.26
3756 6291 1.874320 GCCCGGTTAGCATAGAGAAGC 60.874 57.143 0.00 0.00 0.00 3.86
3757 6292 1.412710 CCCGGTTAGCATAGAGAAGCA 59.587 52.381 0.00 0.00 0.00 3.91
3758 6293 2.037772 CCCGGTTAGCATAGAGAAGCAT 59.962 50.000 0.00 0.00 0.00 3.79
3878 6423 3.161067 TGAAAATCCCGAAATGCTTGGA 58.839 40.909 0.00 0.00 0.00 3.53
3880 6425 2.214376 AATCCCGAAATGCTTGGACA 57.786 45.000 0.00 0.00 0.00 4.02
4078 6623 2.280186 CGCCTCCTAATGTCGCCC 60.280 66.667 0.00 0.00 0.00 6.13
4079 6624 2.111251 GCCTCCTAATGTCGCCCC 59.889 66.667 0.00 0.00 0.00 5.80
4324 6871 2.234908 CAAGGGAGAGAAATGACGAGGT 59.765 50.000 0.00 0.00 0.00 3.85
4352 6899 3.353836 CCGGCCGTGTTGTTCCAG 61.354 66.667 26.12 0.00 0.00 3.86
4353 6900 2.590575 CGGCCGTGTTGTTCCAGT 60.591 61.111 19.50 0.00 0.00 4.00
4354 6901 2.184167 CGGCCGTGTTGTTCCAGTT 61.184 57.895 19.50 0.00 0.00 3.16
4355 6902 1.652563 GGCCGTGTTGTTCCAGTTC 59.347 57.895 0.00 0.00 0.00 3.01
4356 6903 1.278637 GCCGTGTTGTTCCAGTTCG 59.721 57.895 0.00 0.00 0.00 3.95
4357 6904 1.433837 GCCGTGTTGTTCCAGTTCGT 61.434 55.000 0.00 0.00 0.00 3.85
4358 6905 0.303493 CCGTGTTGTTCCAGTTCGTG 59.697 55.000 0.00 0.00 0.00 4.35
4398 6945 2.853542 TCCAGCAGGACCTTGGCA 60.854 61.111 7.29 0.00 39.61 4.92
4399 6946 2.360852 CCAGCAGGACCTTGGCAG 60.361 66.667 6.59 0.00 36.89 4.85
4400 6947 2.433446 CAGCAGGACCTTGGCAGT 59.567 61.111 6.59 0.00 0.00 4.40
4401 6948 1.679311 CAGCAGGACCTTGGCAGTA 59.321 57.895 6.59 0.00 0.00 2.74
4402 6949 0.392193 CAGCAGGACCTTGGCAGTAG 60.392 60.000 6.59 0.00 0.00 2.57
4403 6950 1.078143 GCAGGACCTTGGCAGTAGG 60.078 63.158 3.63 3.63 38.79 3.18
4404 6951 1.078143 CAGGACCTTGGCAGTAGGC 60.078 63.158 5.11 0.00 43.74 3.93
4411 6958 3.068881 TGGCAGTAGGCACAGTCC 58.931 61.111 0.00 0.00 46.46 3.85
4412 6959 1.841103 TGGCAGTAGGCACAGTCCA 60.841 57.895 0.00 0.00 46.46 4.02
4413 6960 1.830587 TGGCAGTAGGCACAGTCCAG 61.831 60.000 0.00 0.00 46.46 3.86
4414 6961 1.975327 GCAGTAGGCACAGTCCAGA 59.025 57.895 0.00 0.00 43.97 3.86
4415 6962 0.539051 GCAGTAGGCACAGTCCAGAT 59.461 55.000 0.00 0.00 43.97 2.90
4416 6963 1.472376 GCAGTAGGCACAGTCCAGATC 60.472 57.143 0.00 0.00 43.97 2.75
4417 6964 1.137872 CAGTAGGCACAGTCCAGATCC 59.862 57.143 0.00 0.00 0.00 3.36
4418 6965 0.103208 GTAGGCACAGTCCAGATCCG 59.897 60.000 0.00 0.00 0.00 4.18
4419 6966 1.043116 TAGGCACAGTCCAGATCCGG 61.043 60.000 0.00 0.00 0.00 5.14
4420 6967 2.359169 GGCACAGTCCAGATCCGGA 61.359 63.158 6.61 6.61 0.00 5.14
4421 6968 1.142748 GCACAGTCCAGATCCGGAG 59.857 63.158 11.34 0.00 35.10 4.63
4422 6969 1.323271 GCACAGTCCAGATCCGGAGA 61.323 60.000 11.34 0.00 35.10 3.71
4423 6970 1.407936 CACAGTCCAGATCCGGAGAT 58.592 55.000 11.34 0.00 35.10 2.75
4424 6971 1.759445 CACAGTCCAGATCCGGAGATT 59.241 52.381 11.34 0.00 35.10 2.40
4425 6972 2.035632 ACAGTCCAGATCCGGAGATTC 58.964 52.381 11.34 2.20 35.10 2.52
4426 6973 2.315176 CAGTCCAGATCCGGAGATTCT 58.685 52.381 11.34 5.07 35.10 2.40
4427 6974 2.295909 CAGTCCAGATCCGGAGATTCTC 59.704 54.545 11.34 5.03 35.10 2.87
4428 6975 2.176798 AGTCCAGATCCGGAGATTCTCT 59.823 50.000 11.34 4.19 35.10 3.10
4429 6976 2.295909 GTCCAGATCCGGAGATTCTCTG 59.704 54.545 20.52 20.52 35.10 3.35
4430 6977 2.091610 TCCAGATCCGGAGATTCTCTGT 60.092 50.000 23.78 3.86 35.27 3.41
4431 6978 2.035704 CCAGATCCGGAGATTCTCTGTG 59.964 54.545 23.78 14.83 35.27 3.66
4432 6979 2.692557 CAGATCCGGAGATTCTCTGTGT 59.307 50.000 19.58 8.70 35.27 3.72
4433 6980 3.885901 CAGATCCGGAGATTCTCTGTGTA 59.114 47.826 19.58 6.79 35.27 2.90
4434 6981 4.023279 CAGATCCGGAGATTCTCTGTGTAG 60.023 50.000 19.58 6.07 35.27 2.74
4435 6982 2.656002 TCCGGAGATTCTCTGTGTAGG 58.344 52.381 18.89 10.55 35.27 3.18
4436 6983 2.241430 TCCGGAGATTCTCTGTGTAGGA 59.759 50.000 18.89 12.22 35.27 2.94
4437 6984 2.621055 CCGGAGATTCTCTGTGTAGGAG 59.379 54.545 18.89 1.01 35.27 3.69
4438 6985 3.546724 CGGAGATTCTCTGTGTAGGAGA 58.453 50.000 13.47 0.00 37.96 3.71
4446 6993 5.186256 TCTCTGTGTAGGAGAAGATGAGT 57.814 43.478 0.00 0.00 36.96 3.41
4447 6994 5.189928 TCTCTGTGTAGGAGAAGATGAGTC 58.810 45.833 0.00 0.00 36.96 3.36
4448 6995 4.274147 TCTGTGTAGGAGAAGATGAGTCC 58.726 47.826 0.00 0.00 0.00 3.85
4449 6996 4.019858 CTGTGTAGGAGAAGATGAGTCCA 58.980 47.826 0.00 0.00 32.23 4.02
4450 6997 4.416516 TGTGTAGGAGAAGATGAGTCCAA 58.583 43.478 0.00 0.00 32.23 3.53
4451 6998 4.220821 TGTGTAGGAGAAGATGAGTCCAAC 59.779 45.833 0.00 0.00 32.23 3.77
4452 6999 3.444034 TGTAGGAGAAGATGAGTCCAACG 59.556 47.826 0.00 0.00 32.23 4.10
4453 7000 1.827969 AGGAGAAGATGAGTCCAACGG 59.172 52.381 0.00 0.00 32.23 4.44
4454 7001 1.646189 GAGAAGATGAGTCCAACGGC 58.354 55.000 0.00 0.00 0.00 5.68
4455 7002 1.205893 GAGAAGATGAGTCCAACGGCT 59.794 52.381 0.00 0.00 0.00 5.52
4456 7003 1.205893 AGAAGATGAGTCCAACGGCTC 59.794 52.381 0.00 0.00 0.00 4.70
4457 7004 1.205893 GAAGATGAGTCCAACGGCTCT 59.794 52.381 0.00 0.00 33.22 4.09
4458 7005 0.534412 AGATGAGTCCAACGGCTCTG 59.466 55.000 0.00 0.00 33.22 3.35
4459 7006 0.460987 GATGAGTCCAACGGCTCTGG 60.461 60.000 0.00 0.00 35.05 3.86
4460 7007 1.194781 ATGAGTCCAACGGCTCTGGT 61.195 55.000 2.14 0.00 35.30 4.00
4461 7008 0.541063 TGAGTCCAACGGCTCTGGTA 60.541 55.000 2.14 0.00 35.30 3.25
4462 7009 0.108756 GAGTCCAACGGCTCTGGTAC 60.109 60.000 2.14 0.00 35.30 3.34
4463 7010 1.445582 GTCCAACGGCTCTGGTACG 60.446 63.158 2.14 0.00 35.30 3.67
4464 7011 2.125673 CCAACGGCTCTGGTACGG 60.126 66.667 0.00 0.00 0.00 4.02
4465 7012 2.642254 CCAACGGCTCTGGTACGGA 61.642 63.158 0.00 0.00 44.24 4.69
4466 7013 1.445582 CAACGGCTCTGGTACGGAC 60.446 63.158 0.00 0.00 39.80 4.79
4467 7014 1.605738 AACGGCTCTGGTACGGACT 60.606 57.895 0.00 0.00 39.80 3.85
4468 7015 1.874345 AACGGCTCTGGTACGGACTG 61.874 60.000 0.00 0.00 39.80 3.51
4469 7016 2.893398 GGCTCTGGTACGGACTGG 59.107 66.667 0.00 0.00 39.80 4.00
4470 7017 2.184579 GCTCTGGTACGGACTGGC 59.815 66.667 0.00 0.00 39.80 4.85
4471 7018 2.490217 CTCTGGTACGGACTGGCG 59.510 66.667 0.00 0.00 39.80 5.69
4472 7019 2.034532 TCTGGTACGGACTGGCGA 59.965 61.111 0.00 0.00 39.80 5.54
4473 7020 2.181021 CTGGTACGGACTGGCGAC 59.819 66.667 0.00 0.00 36.31 5.19
4474 7021 3.678717 CTGGTACGGACTGGCGACG 62.679 68.421 0.00 0.00 36.31 5.12
4511 7058 4.862092 CGATGCGGCTCTGCTCGT 62.862 66.667 0.00 0.00 33.71 4.18
4512 7059 2.510238 GATGCGGCTCTGCTCGTT 60.510 61.111 0.00 0.00 35.36 3.85
4513 7060 2.806856 GATGCGGCTCTGCTCGTTG 61.807 63.158 0.00 0.00 35.36 4.10
4516 7063 2.811317 CGGCTCTGCTCGTTGGTC 60.811 66.667 0.00 0.00 0.00 4.02
4517 7064 2.435059 GGCTCTGCTCGTTGGTCC 60.435 66.667 0.00 0.00 0.00 4.46
4518 7065 2.435059 GCTCTGCTCGTTGGTCCC 60.435 66.667 0.00 0.00 0.00 4.46
4519 7066 2.125912 CTCTGCTCGTTGGTCCCG 60.126 66.667 0.00 0.00 0.00 5.14
4520 7067 2.599281 TCTGCTCGTTGGTCCCGA 60.599 61.111 0.00 0.00 0.00 5.14
4521 7068 2.432628 CTGCTCGTTGGTCCCGAC 60.433 66.667 0.00 0.00 0.00 4.79
4593 7140 2.986413 CCGGAGGCGATCTCGGAT 60.986 66.667 0.00 0.00 46.14 4.18
4594 7141 2.256764 CGGAGGCGATCTCGGATG 59.743 66.667 1.34 0.00 43.12 3.51
4595 7142 2.556459 CGGAGGCGATCTCGGATGT 61.556 63.158 1.34 0.00 43.12 3.06
4596 7143 1.006805 GGAGGCGATCTCGGATGTG 60.007 63.158 1.34 0.00 43.34 3.21
4597 7144 1.006805 GAGGCGATCTCGGATGTGG 60.007 63.158 1.34 0.00 40.23 4.17
4598 7145 1.455773 AGGCGATCTCGGATGTGGA 60.456 57.895 1.34 0.00 40.23 4.02
4599 7146 1.006805 GGCGATCTCGGATGTGGAG 60.007 63.158 1.34 0.00 40.23 3.86
4600 7147 1.006805 GCGATCTCGGATGTGGAGG 60.007 63.158 1.34 0.00 40.23 4.30
4601 7148 1.006805 CGATCTCGGATGTGGAGGC 60.007 63.158 0.00 0.00 35.37 4.70
4602 7149 1.006805 GATCTCGGATGTGGAGGCG 60.007 63.158 0.00 0.00 32.34 5.52
4603 7150 2.427540 GATCTCGGATGTGGAGGCGG 62.428 65.000 0.00 0.00 32.34 6.13
4604 7151 4.899239 CTCGGATGTGGAGGCGGC 62.899 72.222 0.00 0.00 0.00 6.53
4631 7178 4.821589 GACGGGGAGCCGCTTCTG 62.822 72.222 0.00 0.57 36.58 3.02
4659 7206 2.508439 GCGGGAAGCGACGATGAA 60.508 61.111 0.00 0.00 35.41 2.57
4660 7207 2.517450 GCGGGAAGCGACGATGAAG 61.517 63.158 0.00 0.00 35.41 3.02
4661 7208 1.138883 CGGGAAGCGACGATGAAGA 59.861 57.895 0.00 0.00 0.00 2.87
4662 7209 0.249073 CGGGAAGCGACGATGAAGAT 60.249 55.000 0.00 0.00 0.00 2.40
4663 7210 1.802880 CGGGAAGCGACGATGAAGATT 60.803 52.381 0.00 0.00 0.00 2.40
4664 7211 1.861575 GGGAAGCGACGATGAAGATTC 59.138 52.381 0.00 0.00 0.00 2.52
4665 7212 1.518929 GGAAGCGACGATGAAGATTCG 59.481 52.381 0.00 0.00 42.20 3.34
4666 7213 1.518929 GAAGCGACGATGAAGATTCGG 59.481 52.381 0.00 0.00 40.83 4.30
4667 7214 0.738975 AGCGACGATGAAGATTCGGA 59.261 50.000 0.00 0.00 40.83 4.55
4668 7215 1.124462 GCGACGATGAAGATTCGGAG 58.876 55.000 0.00 0.00 40.83 4.63
4669 7216 1.759994 CGACGATGAAGATTCGGAGG 58.240 55.000 0.00 0.00 40.83 4.30
4670 7217 1.492720 GACGATGAAGATTCGGAGGC 58.507 55.000 0.00 0.00 40.83 4.70
4671 7218 0.249073 ACGATGAAGATTCGGAGGCG 60.249 55.000 0.00 0.00 40.83 5.52
4672 7219 0.941463 CGATGAAGATTCGGAGGCGG 60.941 60.000 0.00 0.00 33.05 6.13
4673 7220 0.389391 GATGAAGATTCGGAGGCGGA 59.611 55.000 0.00 0.00 0.00 5.54
4674 7221 0.390860 ATGAAGATTCGGAGGCGGAG 59.609 55.000 0.00 0.00 0.00 4.63
4675 7222 0.683179 TGAAGATTCGGAGGCGGAGA 60.683 55.000 0.00 0.00 0.00 3.71
4676 7223 0.249114 GAAGATTCGGAGGCGGAGAC 60.249 60.000 0.00 0.00 0.00 3.36
4696 7243 2.125952 GCAATGGCGAGGTTTGGC 60.126 61.111 0.00 0.00 0.00 4.52
4697 7244 2.179018 CAATGGCGAGGTTTGGCG 59.821 61.111 0.00 0.00 34.03 5.69
4698 7245 2.282180 AATGGCGAGGTTTGGCGT 60.282 55.556 0.00 0.00 34.03 5.68
4699 7246 2.625823 AATGGCGAGGTTTGGCGTG 61.626 57.895 0.00 0.00 34.03 5.34
4700 7247 3.842925 ATGGCGAGGTTTGGCGTGT 62.843 57.895 0.00 0.00 34.03 4.49
4701 7248 3.723348 GGCGAGGTTTGGCGTGTC 61.723 66.667 0.00 0.00 0.00 3.67
4702 7249 4.072088 GCGAGGTTTGGCGTGTCG 62.072 66.667 0.00 0.00 0.00 4.35
4703 7250 2.355363 CGAGGTTTGGCGTGTCGA 60.355 61.111 0.00 0.00 32.32 4.20
4704 7251 2.372690 CGAGGTTTGGCGTGTCGAG 61.373 63.158 0.00 0.00 32.32 4.04
4705 7252 2.027625 GAGGTTTGGCGTGTCGAGG 61.028 63.158 0.00 0.00 0.00 4.63
4706 7253 3.723348 GGTTTGGCGTGTCGAGGC 61.723 66.667 0.00 0.00 0.00 4.70
4707 7254 4.072088 GTTTGGCGTGTCGAGGCG 62.072 66.667 4.41 4.41 36.92 5.52
4708 7255 4.287781 TTTGGCGTGTCGAGGCGA 62.288 61.111 12.01 0.00 36.92 5.54
4709 7256 4.717629 TTGGCGTGTCGAGGCGAG 62.718 66.667 12.01 0.00 36.23 5.03
4713 7260 4.813526 CGTGTCGAGGCGAGTCGG 62.814 72.222 15.52 0.00 40.49 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.691049 TCGTCCAGCAAAAACAAGAAG 57.309 42.857 0.00 0.00 0.00 2.85
77 78 1.932511 GCAAAGCTCCTCTCTTCATCG 59.067 52.381 0.00 0.00 0.00 3.84
106 107 5.730296 AAGAGCAAAGCTAGTTGAGTCTA 57.270 39.130 2.23 0.00 39.88 2.59
107 108 4.615588 AAGAGCAAAGCTAGTTGAGTCT 57.384 40.909 2.23 0.93 39.88 3.24
108 109 4.153296 GGAAAGAGCAAAGCTAGTTGAGTC 59.847 45.833 2.23 0.00 39.88 3.36
109 110 4.068599 GGAAAGAGCAAAGCTAGTTGAGT 58.931 43.478 2.23 0.00 39.88 3.41
110 111 4.153835 CAGGAAAGAGCAAAGCTAGTTGAG 59.846 45.833 2.23 0.00 39.88 3.02
111 112 4.067896 CAGGAAAGAGCAAAGCTAGTTGA 58.932 43.478 2.23 0.00 39.88 3.18
173 176 6.014840 TGTTCGAGTTTCCTGGAGTATAAACT 60.015 38.462 9.82 9.82 43.06 2.66
191 194 4.845387 AGTATGTACGTATGCTGTTCGAG 58.155 43.478 0.00 0.00 0.00 4.04
283 298 5.420409 AGGAATCCTTCTCGACATGTTAAC 58.580 41.667 0.00 0.00 0.00 2.01
290 305 2.897326 TGTTGAGGAATCCTTCTCGACA 59.103 45.455 2.09 4.61 46.37 4.35
303 318 0.539669 TCTCAGTCCGCTGTTGAGGA 60.540 55.000 10.59 0.00 43.05 3.71
305 320 1.203287 TGATCTCAGTCCGCTGTTGAG 59.797 52.381 0.00 6.22 43.05 3.02
317 332 0.102120 GGCGAGTCACCTGATCTCAG 59.898 60.000 0.00 0.00 43.40 3.35
330 345 4.003788 CCCGGTGACTTGGCGAGT 62.004 66.667 7.22 7.22 42.70 4.18
331 346 2.725203 TTTCCCGGTGACTTGGCGAG 62.725 60.000 0.00 0.00 0.00 5.03
333 348 2.281208 TTTCCCGGTGACTTGGCG 60.281 61.111 0.00 0.00 0.00 5.69
334 349 1.515521 CTGTTTCCCGGTGACTTGGC 61.516 60.000 0.00 0.00 0.00 4.52
336 351 2.140717 GTACTGTTTCCCGGTGACTTG 58.859 52.381 0.00 0.00 33.63 3.16
337 352 1.269936 CGTACTGTTTCCCGGTGACTT 60.270 52.381 0.00 0.00 33.63 3.01
347 372 2.740447 GGGAATGTCACCGTACTGTTTC 59.260 50.000 0.00 0.00 0.00 2.78
348 373 2.551504 GGGGAATGTCACCGTACTGTTT 60.552 50.000 0.00 0.00 25.31 2.83
359 384 0.404040 GTGGACAAGGGGGAATGTCA 59.596 55.000 8.04 0.00 46.07 3.58
360 385 0.404040 TGTGGACAAGGGGGAATGTC 59.596 55.000 0.00 0.00 44.07 3.06
362 387 0.112218 TGTGTGGACAAGGGGGAATG 59.888 55.000 0.00 0.00 0.00 2.67
369 397 2.037641 TGATCTGACTGTGTGGACAAGG 59.962 50.000 0.00 0.00 0.00 3.61
376 404 7.895975 TCTTAATTCTTGATCTGACTGTGTG 57.104 36.000 0.00 0.00 0.00 3.82
409 437 3.069016 AGAATGTCACCGTACTGTTCACA 59.931 43.478 2.56 2.56 0.00 3.58
410 438 3.650139 AGAATGTCACCGTACTGTTCAC 58.350 45.455 0.00 0.00 0.00 3.18
411 439 4.330944 AAGAATGTCACCGTACTGTTCA 57.669 40.909 0.00 0.00 0.00 3.18
412 440 5.519206 GGATAAGAATGTCACCGTACTGTTC 59.481 44.000 0.00 0.00 0.00 3.18
440 469 1.603802 CATCGGTGATGTAACATGGCC 59.396 52.381 0.00 0.00 35.54 5.36
464 493 5.739070 GCTGGTTAGTGATCGATGGTATGAA 60.739 44.000 0.54 0.00 0.00 2.57
465 494 4.262036 GCTGGTTAGTGATCGATGGTATGA 60.262 45.833 0.54 0.00 0.00 2.15
541 579 2.165167 CTACCCTCGTGTTCAGGTACA 58.835 52.381 0.00 0.00 33.70 2.90
542 580 2.163211 GACTACCCTCGTGTTCAGGTAC 59.837 54.545 0.00 0.00 33.70 3.34
548 586 0.109412 CGGTGACTACCCTCGTGTTC 60.109 60.000 0.00 0.00 44.53 3.18
581 619 9.893305 ACTGCAACTTTGTATTCTTAAATGTAC 57.107 29.630 0.00 0.00 0.00 2.90
618 657 7.121759 CAGGACACTTCTATCAACCAATCAAAT 59.878 37.037 0.00 0.00 0.00 2.32
627 666 5.297547 TCACAACAGGACACTTCTATCAAC 58.702 41.667 0.00 0.00 0.00 3.18
738 793 4.008933 GCAGCAGGTCGGGTCACT 62.009 66.667 0.00 0.00 0.00 3.41
761 816 2.747686 GAGTGGGAAGGTTGCCGA 59.252 61.111 0.00 0.00 42.27 5.54
791 846 1.522569 GTCAGGGACCCAGGAATCG 59.477 63.158 14.60 0.00 0.00 3.34
828 883 2.823747 TCGTTGTACCACTACAGAGCAT 59.176 45.455 0.00 0.00 34.25 3.79
829 884 2.232399 TCGTTGTACCACTACAGAGCA 58.768 47.619 0.00 0.00 34.25 4.26
831 886 3.231965 CGTTCGTTGTACCACTACAGAG 58.768 50.000 0.00 0.00 34.25 3.35
832 887 2.605338 GCGTTCGTTGTACCACTACAGA 60.605 50.000 0.00 0.00 34.25 3.41
833 888 1.717645 GCGTTCGTTGTACCACTACAG 59.282 52.381 0.00 0.00 34.25 2.74
834 889 1.769733 GCGTTCGTTGTACCACTACA 58.230 50.000 0.00 0.00 0.00 2.74
835 890 0.704551 CGCGTTCGTTGTACCACTAC 59.295 55.000 0.00 0.00 0.00 2.73
836 891 0.387112 CCGCGTTCGTTGTACCACTA 60.387 55.000 4.92 0.00 0.00 2.74
839 894 3.037249 GCCGCGTTCGTTGTACCA 61.037 61.111 4.92 0.00 0.00 3.25
840 895 3.781162 GGCCGCGTTCGTTGTACC 61.781 66.667 4.92 0.00 0.00 3.34
841 896 3.007070 CTGGCCGCGTTCGTTGTAC 62.007 63.158 4.92 0.00 0.00 2.90
843 898 4.903010 ACTGGCCGCGTTCGTTGT 62.903 61.111 4.92 0.00 0.00 3.32
844 899 4.368808 CACTGGCCGCGTTCGTTG 62.369 66.667 4.92 0.00 0.00 4.10
845 900 4.595538 TCACTGGCCGCGTTCGTT 62.596 61.111 4.92 0.00 0.00 3.85
846 901 4.595538 TTCACTGGCCGCGTTCGT 62.596 61.111 4.92 0.00 0.00 3.85
847 902 4.072088 GTTCACTGGCCGCGTTCG 62.072 66.667 4.92 0.00 0.00 3.95
848 903 1.782028 AAAGTTCACTGGCCGCGTTC 61.782 55.000 4.92 0.00 0.00 3.95
851 906 1.082104 GAAAAGTTCACTGGCCGCG 60.082 57.895 0.00 0.00 0.00 6.46
852 907 0.668535 AAGAAAAGTTCACTGGCCGC 59.331 50.000 0.00 0.00 0.00 6.53
854 909 2.866156 GCAAAAGAAAAGTTCACTGGCC 59.134 45.455 0.00 0.00 0.00 5.36
856 911 6.128742 GCATATGCAAAAGAAAAGTTCACTGG 60.129 38.462 22.84 0.00 41.59 4.00
857 912 6.643770 AGCATATGCAAAAGAAAAGTTCACTG 59.356 34.615 28.62 0.00 45.16 3.66
858 913 6.752168 AGCATATGCAAAAGAAAAGTTCACT 58.248 32.000 28.62 0.00 45.16 3.41
860 915 6.864685 CAGAGCATATGCAAAAGAAAAGTTCA 59.135 34.615 28.62 0.00 45.16 3.18
861 916 6.865205 ACAGAGCATATGCAAAAGAAAAGTTC 59.135 34.615 28.62 12.86 45.16 3.01
863 918 6.336842 ACAGAGCATATGCAAAAGAAAAGT 57.663 33.333 28.62 10.87 45.16 2.66
864 919 6.971184 CCTACAGAGCATATGCAAAAGAAAAG 59.029 38.462 28.62 14.27 45.16 2.27
865 920 6.127647 CCCTACAGAGCATATGCAAAAGAAAA 60.128 38.462 28.62 6.19 45.16 2.29
982 3458 1.047801 GTGTGCTTGGAAATGGGGTT 58.952 50.000 0.00 0.00 0.00 4.11
983 3459 0.831711 GGTGTGCTTGGAAATGGGGT 60.832 55.000 0.00 0.00 0.00 4.95
1006 3482 0.035630 AGAATGTGGAGGACTGCTGC 60.036 55.000 0.00 0.00 0.00 5.25
1007 3483 2.027377 AGAAGAATGTGGAGGACTGCTG 60.027 50.000 0.00 0.00 0.00 4.41
1010 3486 4.550076 AGAAGAAGAATGTGGAGGACTG 57.450 45.455 0.00 0.00 0.00 3.51
1034 3516 1.150081 GGCTGGATGGATGGTGGAG 59.850 63.158 0.00 0.00 0.00 3.86
1043 3525 1.133884 ACATGAGACATGGCTGGATGG 60.134 52.381 5.31 0.00 0.00 3.51
1060 3542 2.037772 AGAAGTCCGAAGCAGAACACAT 59.962 45.455 0.00 0.00 0.00 3.21
1093 3582 3.458163 GGGTGTGCGGATCGAGGA 61.458 66.667 0.00 0.00 0.00 3.71
1098 3587 3.083997 AGGGAGGGTGTGCGGATC 61.084 66.667 0.00 0.00 0.00 3.36
1100 3589 4.631740 TGAGGGAGGGTGTGCGGA 62.632 66.667 0.00 0.00 0.00 5.54
1236 3725 2.030490 TACCACTTGGGCGTGTCGTT 62.030 55.000 0.00 0.00 42.05 3.85
1419 3924 4.322385 GGTGGTGTTTGTCGCGGC 62.322 66.667 2.29 2.29 0.00 6.53
1422 3927 2.629763 GACGGTGGTGTTTGTCGC 59.370 61.111 0.00 0.00 0.00 5.19
1456 3961 1.866925 CGGAGAACAAGGTTTCCGC 59.133 57.895 4.06 0.00 44.99 5.54
1506 4011 3.818210 TGATCGTAGCTTTGCCAGAAAAA 59.182 39.130 0.00 0.00 0.00 1.94
1641 4146 2.829720 TGTGGCCAGATAACTCGTAAGT 59.170 45.455 5.11 0.00 37.32 2.24
1754 4262 0.329596 ATTTCTGGCCCACACTCTCC 59.670 55.000 0.00 0.00 0.00 3.71
1766 4274 1.283029 TGAAGGGAGAGCCATTTCTGG 59.717 52.381 0.00 0.00 46.17 3.86
1781 4289 3.731652 TTGTTGCTGGTGAATTGAAGG 57.268 42.857 0.00 0.00 0.00 3.46
1787 4295 3.005155 GCTCTTCTTTGTTGCTGGTGAAT 59.995 43.478 0.00 0.00 0.00 2.57
1871 4379 2.886523 CAAGAGCACCTTCATTTGACCA 59.113 45.455 0.00 0.00 31.42 4.02
1890 4398 1.905894 TGATGATCCCTCGAACCACAA 59.094 47.619 0.00 0.00 0.00 3.33
1904 4412 2.029623 GCCTGCCAATCTTGTGATGAT 58.970 47.619 0.00 0.00 32.44 2.45
1940 4448 2.349590 TGGACATCGCACTGAGATTTG 58.650 47.619 0.00 0.00 0.00 2.32
2062 4570 1.592669 CATCCAGCCGATCGGTCAC 60.593 63.158 33.33 18.23 37.65 3.67
2110 4618 1.314534 TGCACTGCTGTTGCTGTTGT 61.315 50.000 15.25 0.00 46.76 3.32
2116 4624 4.695231 CGGCTGCACTGCTGTTGC 62.695 66.667 0.50 9.92 40.20 4.17
2119 4627 2.745100 CATCGGCTGCACTGCTGT 60.745 61.111 0.50 0.00 40.06 4.40
2120 4628 3.506096 CCATCGGCTGCACTGCTG 61.506 66.667 0.50 2.86 40.46 4.41
2131 4639 1.338337 ACTTATCTGTCTCGCCATCGG 59.662 52.381 0.00 0.00 36.13 4.18
2133 4641 4.314740 AGAACTTATCTGTCTCGCCATC 57.685 45.455 0.00 0.00 36.88 3.51
2134 4642 4.038162 GGTAGAACTTATCTGTCTCGCCAT 59.962 45.833 0.00 0.00 39.30 4.40
2135 4643 3.380637 GGTAGAACTTATCTGTCTCGCCA 59.619 47.826 0.00 0.00 39.30 5.69
2367 4875 4.338118 CCTTCTGTTGGTTTTACTGCTTGA 59.662 41.667 0.00 0.00 0.00 3.02
2630 5141 2.489722 GACTCCATCAAGCCTTTTCACC 59.510 50.000 0.00 0.00 0.00 4.02
2816 5333 0.887247 TCCAATCCAACACCAATGCG 59.113 50.000 0.00 0.00 0.00 4.73
2819 5336 3.075283 TGGTAGTCCAATCCAACACCAAT 59.925 43.478 0.00 0.00 41.25 3.16
2820 5337 2.443632 TGGTAGTCCAATCCAACACCAA 59.556 45.455 0.00 0.00 41.25 3.67
2966 5489 0.243636 CCATTCCAAAGTCCGCAACC 59.756 55.000 0.00 0.00 0.00 3.77
3083 5606 3.244579 AGCTGTAAACGTCAACTTTCGAC 59.755 43.478 0.00 0.00 0.00 4.20
3209 5732 1.294659 CTCCCTCAACAAGACTGCGC 61.295 60.000 0.00 0.00 0.00 6.09
3224 5747 0.951040 CCAGACTTGCAACGTCTCCC 60.951 60.000 21.32 3.98 39.59 4.30
3263 5786 0.249238 CCTCCTCCAGATTCGCTTCG 60.249 60.000 0.00 0.00 0.00 3.79
3338 5861 2.492088 CACGACCTCACTCATTGTAGGA 59.508 50.000 0.00 0.00 33.16 2.94
3356 5879 2.033407 CAGACACTCAAGAAACTGCACG 60.033 50.000 0.00 0.00 0.00 5.34
3431 5954 5.240183 CGGCTACATCATCTTTGGATTTGAT 59.760 40.000 0.00 0.00 0.00 2.57
3432 5955 4.576053 CGGCTACATCATCTTTGGATTTGA 59.424 41.667 0.00 0.00 0.00 2.69
3446 5969 2.596904 TCCAAACTAGCGGCTACATC 57.403 50.000 5.42 0.00 0.00 3.06
3453 5976 2.403252 ACCAGAATCCAAACTAGCGG 57.597 50.000 0.00 0.00 0.00 5.52
3489 6013 2.988010 TAGGCAGCTCAACTACCATG 57.012 50.000 0.00 0.00 33.69 3.66
3500 6024 4.344968 ACAAAGGAAAAACAATAGGCAGCT 59.655 37.500 0.00 0.00 0.00 4.24
3501 6025 4.631131 ACAAAGGAAAAACAATAGGCAGC 58.369 39.130 0.00 0.00 0.00 5.25
3502 6026 6.311200 GCATACAAAGGAAAAACAATAGGCAG 59.689 38.462 0.00 0.00 0.00 4.85
3503 6027 6.014669 AGCATACAAAGGAAAAACAATAGGCA 60.015 34.615 0.00 0.00 0.00 4.75
3525 6053 6.765403 ACCAAATTACAAGAGTACTGTAGCA 58.235 36.000 0.00 0.00 0.00 3.49
3526 6054 7.097834 AGACCAAATTACAAGAGTACTGTAGC 58.902 38.462 0.00 0.00 0.00 3.58
3527 6055 7.760340 GGAGACCAAATTACAAGAGTACTGTAG 59.240 40.741 0.00 0.00 0.00 2.74
3528 6056 7.609056 GGAGACCAAATTACAAGAGTACTGTA 58.391 38.462 0.00 0.00 0.00 2.74
3529 6057 6.465084 GGAGACCAAATTACAAGAGTACTGT 58.535 40.000 0.00 0.00 0.00 3.55
3530 6058 6.969828 GGAGACCAAATTACAAGAGTACTG 57.030 41.667 0.00 0.00 0.00 2.74
3676 6204 0.318614 GACATTGTTGCACCAACCGG 60.319 55.000 0.00 0.00 42.96 5.28
3681 6209 3.188254 CGTATCTTGACATTGTTGCACCA 59.812 43.478 0.00 0.00 0.00 4.17
3697 6225 8.948631 ACTGAACATTAACATGATTCGTATCT 57.051 30.769 0.00 0.00 34.11 1.98
3705 6233 5.220854 GGCGCTAACTGAACATTAACATGAT 60.221 40.000 7.64 0.00 34.11 2.45
3706 6234 4.094294 GGCGCTAACTGAACATTAACATGA 59.906 41.667 7.64 0.00 34.11 3.07
3707 6235 4.094887 AGGCGCTAACTGAACATTAACATG 59.905 41.667 7.64 0.00 36.34 3.21
3708 6236 4.261801 AGGCGCTAACTGAACATTAACAT 58.738 39.130 7.64 0.00 0.00 2.71
3709 6237 3.670625 AGGCGCTAACTGAACATTAACA 58.329 40.909 7.64 0.00 0.00 2.41
3710 6238 4.680171 AAGGCGCTAACTGAACATTAAC 57.320 40.909 7.64 0.00 0.00 2.01
3711 6239 4.083003 CCAAAGGCGCTAACTGAACATTAA 60.083 41.667 7.64 0.00 0.00 1.40
3712 6240 3.438781 CCAAAGGCGCTAACTGAACATTA 59.561 43.478 7.64 0.00 0.00 1.90
3713 6241 2.228822 CCAAAGGCGCTAACTGAACATT 59.771 45.455 7.64 0.00 0.00 2.71
3714 6242 1.812571 CCAAAGGCGCTAACTGAACAT 59.187 47.619 7.64 0.00 0.00 2.71
3715 6243 1.234821 CCAAAGGCGCTAACTGAACA 58.765 50.000 7.64 0.00 0.00 3.18
3716 6244 0.521735 CCCAAAGGCGCTAACTGAAC 59.478 55.000 7.64 0.00 0.00 3.18
3738 6273 2.890808 TGCTTCTCTATGCTAACCGG 57.109 50.000 0.00 0.00 0.00 5.28
3756 6291 4.589798 TGGAAATATCTGCAATTCCCCATG 59.410 41.667 10.54 0.00 40.49 3.66
3757 6292 4.818447 TGGAAATATCTGCAATTCCCCAT 58.182 39.130 10.54 0.00 40.49 4.00
3758 6293 4.217510 CTGGAAATATCTGCAATTCCCCA 58.782 43.478 10.54 7.51 40.49 4.96
3878 6423 0.907704 TCAAGGTAGGCATCCCGTGT 60.908 55.000 0.00 0.00 35.76 4.49
3880 6425 1.213296 AATCAAGGTAGGCATCCCGT 58.787 50.000 0.00 0.00 35.76 5.28
4255 6800 0.464916 AGGGTCGACCGCAAGTTTTT 60.465 50.000 27.68 1.18 46.96 1.94
4256 6801 0.464916 AAGGGTCGACCGCAAGTTTT 60.465 50.000 27.68 10.29 46.96 2.43
4257 6802 0.464916 AAAGGGTCGACCGCAAGTTT 60.465 50.000 27.68 17.47 46.96 2.66
4258 6803 0.464916 AAAAGGGTCGACCGCAAGTT 60.465 50.000 27.68 14.03 46.96 2.66
4259 6804 0.464916 AAAAAGGGTCGACCGCAAGT 60.465 50.000 27.68 10.51 46.96 3.16
4260 6805 2.327228 AAAAAGGGTCGACCGCAAG 58.673 52.632 27.68 0.00 46.96 4.01
4261 6806 4.563404 AAAAAGGGTCGACCGCAA 57.437 50.000 27.68 0.00 46.96 4.85
4344 6891 0.878523 CGAGCCACGAACTGGAACAA 60.879 55.000 0.00 0.00 43.95 2.83
4381 6928 2.853542 TGCCAAGGTCCTGCTGGA 60.854 61.111 13.13 8.48 40.69 3.86
4382 6929 1.841302 TACTGCCAAGGTCCTGCTGG 61.841 60.000 2.58 2.58 0.00 4.85
4383 6930 0.392193 CTACTGCCAAGGTCCTGCTG 60.392 60.000 0.00 0.00 0.00 4.41
4384 6931 1.557269 CCTACTGCCAAGGTCCTGCT 61.557 60.000 0.00 0.00 0.00 4.24
4385 6932 1.078143 CCTACTGCCAAGGTCCTGC 60.078 63.158 0.00 0.00 0.00 4.85
4386 6933 1.078143 GCCTACTGCCAAGGTCCTG 60.078 63.158 0.00 0.00 36.43 3.86
4387 6934 1.538876 TGCCTACTGCCAAGGTCCT 60.539 57.895 0.00 0.00 40.16 3.85
4388 6935 1.377333 GTGCCTACTGCCAAGGTCC 60.377 63.158 0.00 0.00 40.16 4.46
4389 6936 0.674895 CTGTGCCTACTGCCAAGGTC 60.675 60.000 0.00 0.00 40.16 3.85
4390 6937 1.376466 CTGTGCCTACTGCCAAGGT 59.624 57.895 0.00 0.00 40.16 3.50
4391 6938 0.674895 GACTGTGCCTACTGCCAAGG 60.675 60.000 0.00 0.00 40.16 3.61
4392 6939 0.674895 GGACTGTGCCTACTGCCAAG 60.675 60.000 0.00 0.00 40.16 3.61
4393 6940 1.374947 GGACTGTGCCTACTGCCAA 59.625 57.895 0.00 0.00 40.16 4.52
4394 6941 1.830587 CTGGACTGTGCCTACTGCCA 61.831 60.000 0.00 0.00 40.16 4.92
4395 6942 1.078848 CTGGACTGTGCCTACTGCC 60.079 63.158 0.00 0.00 40.16 4.85
4396 6943 0.539051 ATCTGGACTGTGCCTACTGC 59.461 55.000 0.00 0.00 41.77 4.40
4397 6944 1.137872 GGATCTGGACTGTGCCTACTG 59.862 57.143 0.00 0.00 0.00 2.74
4398 6945 1.490574 GGATCTGGACTGTGCCTACT 58.509 55.000 0.00 0.00 0.00 2.57
4399 6946 0.103208 CGGATCTGGACTGTGCCTAC 59.897 60.000 0.00 0.00 0.00 3.18
4400 6947 1.043116 CCGGATCTGGACTGTGCCTA 61.043 60.000 16.28 0.00 0.00 3.93
4401 6948 2.362369 CCGGATCTGGACTGTGCCT 61.362 63.158 16.28 0.00 0.00 4.75
4402 6949 2.187946 CCGGATCTGGACTGTGCC 59.812 66.667 16.28 0.00 0.00 5.01
4403 6950 1.142748 CTCCGGATCTGGACTGTGC 59.857 63.158 19.95 0.00 33.48 4.57
4404 6951 1.407936 ATCTCCGGATCTGGACTGTG 58.592 55.000 19.95 10.07 33.48 3.66
4405 6952 2.035632 GAATCTCCGGATCTGGACTGT 58.964 52.381 19.95 7.00 33.48 3.55
4406 6953 2.295909 GAGAATCTCCGGATCTGGACTG 59.704 54.545 19.95 11.19 33.48 3.51
4407 6954 2.593026 GAGAATCTCCGGATCTGGACT 58.407 52.381 19.95 14.69 33.48 3.85
4421 6968 6.321181 ACTCATCTTCTCCTACACAGAGAATC 59.679 42.308 3.85 0.00 46.44 2.52
4422 6969 6.194235 ACTCATCTTCTCCTACACAGAGAAT 58.806 40.000 3.85 0.00 46.44 2.40
4423 6970 5.575157 ACTCATCTTCTCCTACACAGAGAA 58.425 41.667 3.43 3.43 45.72 2.87
4424 6971 5.186256 ACTCATCTTCTCCTACACAGAGA 57.814 43.478 0.00 0.00 38.60 3.10
4425 6972 4.338118 GGACTCATCTTCTCCTACACAGAG 59.662 50.000 0.00 0.00 0.00 3.35
4426 6973 4.263949 TGGACTCATCTTCTCCTACACAGA 60.264 45.833 0.00 0.00 0.00 3.41
4427 6974 4.019858 TGGACTCATCTTCTCCTACACAG 58.980 47.826 0.00 0.00 0.00 3.66
4428 6975 4.047627 TGGACTCATCTTCTCCTACACA 57.952 45.455 0.00 0.00 0.00 3.72
4429 6976 4.675671 CGTTGGACTCATCTTCTCCTACAC 60.676 50.000 0.00 0.00 31.51 2.90
4430 6977 3.444034 CGTTGGACTCATCTTCTCCTACA 59.556 47.826 0.00 0.00 31.51 2.74
4431 6978 3.181485 CCGTTGGACTCATCTTCTCCTAC 60.181 52.174 0.00 0.00 0.00 3.18
4432 6979 3.024547 CCGTTGGACTCATCTTCTCCTA 58.975 50.000 0.00 0.00 0.00 2.94
4433 6980 1.827969 CCGTTGGACTCATCTTCTCCT 59.172 52.381 0.00 0.00 0.00 3.69
4434 6981 1.740718 GCCGTTGGACTCATCTTCTCC 60.741 57.143 0.00 0.00 0.00 3.71
4435 6982 1.205893 AGCCGTTGGACTCATCTTCTC 59.794 52.381 0.00 0.00 0.00 2.87
4436 6983 1.205893 GAGCCGTTGGACTCATCTTCT 59.794 52.381 0.00 0.00 32.98 2.85
4437 6984 1.205893 AGAGCCGTTGGACTCATCTTC 59.794 52.381 9.04 0.00 35.28 2.87
4438 6985 1.066573 CAGAGCCGTTGGACTCATCTT 60.067 52.381 9.04 0.00 35.28 2.40
4439 6986 0.534412 CAGAGCCGTTGGACTCATCT 59.466 55.000 9.04 0.00 35.28 2.90
4440 6987 0.460987 CCAGAGCCGTTGGACTCATC 60.461 60.000 9.04 0.00 37.96 2.92
4441 6988 1.194781 ACCAGAGCCGTTGGACTCAT 61.195 55.000 5.81 0.00 39.08 2.90
4442 6989 0.541063 TACCAGAGCCGTTGGACTCA 60.541 55.000 5.81 0.00 39.08 3.41
4443 6990 0.108756 GTACCAGAGCCGTTGGACTC 60.109 60.000 5.81 0.00 39.08 3.36
4444 6991 1.874345 CGTACCAGAGCCGTTGGACT 61.874 60.000 5.81 0.00 39.08 3.85
4445 6992 1.445582 CGTACCAGAGCCGTTGGAC 60.446 63.158 5.81 0.33 39.08 4.02
4446 6993 2.642254 CCGTACCAGAGCCGTTGGA 61.642 63.158 5.81 0.00 39.08 3.53
4447 6994 2.125673 CCGTACCAGAGCCGTTGG 60.126 66.667 0.00 0.00 41.60 3.77
4448 6995 1.445582 GTCCGTACCAGAGCCGTTG 60.446 63.158 0.00 0.00 0.00 4.10
4449 6996 1.605738 AGTCCGTACCAGAGCCGTT 60.606 57.895 0.00 0.00 0.00 4.44
4450 6997 2.035312 AGTCCGTACCAGAGCCGT 59.965 61.111 0.00 0.00 0.00 5.68
4451 6998 2.490217 CAGTCCGTACCAGAGCCG 59.510 66.667 0.00 0.00 0.00 5.52
4452 6999 2.893398 CCAGTCCGTACCAGAGCC 59.107 66.667 0.00 0.00 0.00 4.70
4453 7000 2.184579 GCCAGTCCGTACCAGAGC 59.815 66.667 0.00 0.00 0.00 4.09
4454 7001 2.044555 TCGCCAGTCCGTACCAGAG 61.045 63.158 0.00 0.00 0.00 3.35
4455 7002 2.034532 TCGCCAGTCCGTACCAGA 59.965 61.111 0.00 0.00 0.00 3.86
4456 7003 2.181021 GTCGCCAGTCCGTACCAG 59.819 66.667 0.00 0.00 0.00 4.00
4457 7004 3.740397 CGTCGCCAGTCCGTACCA 61.740 66.667 0.00 0.00 0.00 3.25
4494 7041 4.862092 ACGAGCAGAGCCGCATCG 62.862 66.667 0.00 0.00 38.03 3.84
4495 7042 2.510238 AACGAGCAGAGCCGCATC 60.510 61.111 0.00 0.00 0.00 3.91
4496 7043 2.816958 CAACGAGCAGAGCCGCAT 60.817 61.111 0.00 0.00 0.00 4.73
4499 7046 2.811317 GACCAACGAGCAGAGCCG 60.811 66.667 0.00 0.00 0.00 5.52
4500 7047 2.435059 GGACCAACGAGCAGAGCC 60.435 66.667 0.00 0.00 0.00 4.70
4501 7048 2.435059 GGGACCAACGAGCAGAGC 60.435 66.667 0.00 0.00 0.00 4.09
4502 7049 2.125912 CGGGACCAACGAGCAGAG 60.126 66.667 0.00 0.00 0.00 3.35
4503 7050 2.599281 TCGGGACCAACGAGCAGA 60.599 61.111 0.00 0.00 35.12 4.26
4504 7051 2.432628 GTCGGGACCAACGAGCAG 60.433 66.667 0.00 0.00 41.50 4.24
4505 7052 4.351938 CGTCGGGACCAACGAGCA 62.352 66.667 12.03 0.00 41.50 4.26
4506 7053 4.047059 TCGTCGGGACCAACGAGC 62.047 66.667 15.15 1.50 42.49 5.03
4508 7055 4.047059 GCTCGTCGGGACCAACGA 62.047 66.667 17.35 17.35 44.91 3.85
4576 7123 2.986413 ATCCGAGATCGCCTCCGG 60.986 66.667 0.00 0.00 38.71 5.14
4577 7124 2.256764 CATCCGAGATCGCCTCCG 59.743 66.667 0.00 0.00 38.71 4.63
4578 7125 1.006805 CACATCCGAGATCGCCTCC 60.007 63.158 0.00 0.00 38.71 4.30
4579 7126 1.006805 CCACATCCGAGATCGCCTC 60.007 63.158 0.00 0.00 38.18 4.70
4580 7127 1.455773 TCCACATCCGAGATCGCCT 60.456 57.895 0.00 0.00 38.18 5.52
4581 7128 1.006805 CTCCACATCCGAGATCGCC 60.007 63.158 0.00 0.00 38.18 5.54
4582 7129 1.006805 CCTCCACATCCGAGATCGC 60.007 63.158 0.00 0.00 38.18 4.58
4583 7130 1.006805 GCCTCCACATCCGAGATCG 60.007 63.158 0.00 0.00 39.44 3.69
4584 7131 1.006805 CGCCTCCACATCCGAGATC 60.007 63.158 0.00 0.00 0.00 2.75
4585 7132 2.502492 CCGCCTCCACATCCGAGAT 61.502 63.158 0.00 0.00 0.00 2.75
4586 7133 3.147595 CCGCCTCCACATCCGAGA 61.148 66.667 0.00 0.00 0.00 4.04
4587 7134 4.899239 GCCGCCTCCACATCCGAG 62.899 72.222 0.00 0.00 0.00 4.63
4642 7189 2.508439 TTCATCGTCGCTTCCCGC 60.508 61.111 0.00 0.00 36.73 6.13
4643 7190 0.249073 ATCTTCATCGTCGCTTCCCG 60.249 55.000 0.00 0.00 38.61 5.14
4644 7191 1.861575 GAATCTTCATCGTCGCTTCCC 59.138 52.381 0.00 0.00 0.00 3.97
4645 7192 1.518929 CGAATCTTCATCGTCGCTTCC 59.481 52.381 0.00 0.00 35.64 3.46
4646 7193 1.518929 CCGAATCTTCATCGTCGCTTC 59.481 52.381 0.00 0.00 38.60 3.86
4647 7194 1.134367 TCCGAATCTTCATCGTCGCTT 59.866 47.619 0.00 0.00 38.60 4.68
4648 7195 0.738975 TCCGAATCTTCATCGTCGCT 59.261 50.000 0.00 0.00 38.60 4.93
4649 7196 1.124462 CTCCGAATCTTCATCGTCGC 58.876 55.000 0.00 0.00 38.60 5.19
4650 7197 1.759994 CCTCCGAATCTTCATCGTCG 58.240 55.000 0.00 0.00 38.60 5.12
4651 7198 1.492720 GCCTCCGAATCTTCATCGTC 58.507 55.000 0.00 0.00 38.60 4.20
4652 7199 0.249073 CGCCTCCGAATCTTCATCGT 60.249 55.000 0.00 0.00 38.60 3.73
4653 7200 0.941463 CCGCCTCCGAATCTTCATCG 60.941 60.000 0.00 0.00 39.92 3.84
4654 7201 0.389391 TCCGCCTCCGAATCTTCATC 59.611 55.000 0.00 0.00 36.29 2.92
4655 7202 0.390860 CTCCGCCTCCGAATCTTCAT 59.609 55.000 0.00 0.00 36.29 2.57
4656 7203 0.683179 TCTCCGCCTCCGAATCTTCA 60.683 55.000 0.00 0.00 36.29 3.02
4657 7204 0.249114 GTCTCCGCCTCCGAATCTTC 60.249 60.000 0.00 0.00 36.29 2.87
4658 7205 1.817209 GTCTCCGCCTCCGAATCTT 59.183 57.895 0.00 0.00 36.29 2.40
4659 7206 2.482333 CGTCTCCGCCTCCGAATCT 61.482 63.158 0.00 0.00 36.29 2.40
4660 7207 2.026301 CGTCTCCGCCTCCGAATC 59.974 66.667 0.00 0.00 36.29 2.52
4661 7208 2.439701 TCGTCTCCGCCTCCGAAT 60.440 61.111 0.00 0.00 36.29 3.34
4662 7209 3.132139 CTCGTCTCCGCCTCCGAA 61.132 66.667 0.00 0.00 36.29 4.30
4665 7212 3.082579 ATTGCTCGTCTCCGCCTCC 62.083 63.158 0.00 0.00 0.00 4.30
4666 7213 1.880340 CATTGCTCGTCTCCGCCTC 60.880 63.158 0.00 0.00 0.00 4.70
4667 7214 2.185350 CATTGCTCGTCTCCGCCT 59.815 61.111 0.00 0.00 0.00 5.52
4668 7215 2.892425 CCATTGCTCGTCTCCGCC 60.892 66.667 0.00 0.00 0.00 6.13
4669 7216 3.567797 GCCATTGCTCGTCTCCGC 61.568 66.667 0.00 0.00 33.53 5.54
4670 7217 3.257561 CGCCATTGCTCGTCTCCG 61.258 66.667 0.00 0.00 34.43 4.63
4671 7218 1.880340 CTCGCCATTGCTCGTCTCC 60.880 63.158 0.00 0.00 34.43 3.71
4672 7219 1.880340 CCTCGCCATTGCTCGTCTC 60.880 63.158 0.00 0.00 34.43 3.36
4673 7220 2.172483 AACCTCGCCATTGCTCGTCT 62.172 55.000 0.00 0.00 34.43 4.18
4674 7221 1.298859 AAACCTCGCCATTGCTCGTC 61.299 55.000 0.00 0.00 34.43 4.20
4675 7222 1.302511 AAACCTCGCCATTGCTCGT 60.303 52.632 0.00 0.00 34.43 4.18
4676 7223 1.135315 CAAACCTCGCCATTGCTCG 59.865 57.895 0.00 0.00 34.43 5.03
4677 7224 1.508088 CCAAACCTCGCCATTGCTC 59.492 57.895 0.00 0.00 34.43 4.26
4678 7225 2.639327 GCCAAACCTCGCCATTGCT 61.639 57.895 0.00 0.00 34.43 3.91
4679 7226 2.125952 GCCAAACCTCGCCATTGC 60.126 61.111 0.00 0.00 0.00 3.56
4680 7227 2.179018 CGCCAAACCTCGCCATTG 59.821 61.111 0.00 0.00 0.00 2.82
4681 7228 2.282180 ACGCCAAACCTCGCCATT 60.282 55.556 0.00 0.00 0.00 3.16
4682 7229 3.055719 CACGCCAAACCTCGCCAT 61.056 61.111 0.00 0.00 0.00 4.40
4683 7230 4.555709 ACACGCCAAACCTCGCCA 62.556 61.111 0.00 0.00 0.00 5.69
4684 7231 3.723348 GACACGCCAAACCTCGCC 61.723 66.667 0.00 0.00 0.00 5.54
4685 7232 4.072088 CGACACGCCAAACCTCGC 62.072 66.667 0.00 0.00 0.00 5.03
4686 7233 2.355363 TCGACACGCCAAACCTCG 60.355 61.111 0.00 0.00 0.00 4.63
4687 7234 2.027625 CCTCGACACGCCAAACCTC 61.028 63.158 0.00 0.00 0.00 3.85
4688 7235 2.030562 CCTCGACACGCCAAACCT 59.969 61.111 0.00 0.00 0.00 3.50
4689 7236 3.723348 GCCTCGACACGCCAAACC 61.723 66.667 0.00 0.00 0.00 3.27
4690 7237 4.072088 CGCCTCGACACGCCAAAC 62.072 66.667 0.00 0.00 0.00 2.93
4691 7238 4.287781 TCGCCTCGACACGCCAAA 62.288 61.111 0.00 0.00 0.00 3.28
4692 7239 4.717629 CTCGCCTCGACACGCCAA 62.718 66.667 0.00 0.00 0.00 4.52
4696 7243 4.813526 CCGACTCGCCTCGACACG 62.814 72.222 3.41 0.00 35.58 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.