Multiple sequence alignment - TraesCS2A01G545600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G545600 chr2A 100.000 5544 0 0 1 5544 754362796 754357253 0.000000e+00 10238.0
1 TraesCS2A01G545600 chr2A 85.567 194 25 3 2535 2727 559846934 559846743 3.390000e-47 200.0
2 TraesCS2A01G545600 chr2D 91.850 3264 181 46 1581 4796 622926189 622922963 0.000000e+00 4475.0
3 TraesCS2A01G545600 chr2D 83.301 1042 102 35 399 1387 622927370 622926348 0.000000e+00 894.0
4 TraesCS2A01G545600 chr2D 81.818 341 37 11 1 330 622927948 622927622 4.260000e-66 263.0
5 TraesCS2A01G545600 chr2D 84.774 243 18 9 4794 5017 622922857 622922615 5.590000e-55 226.0
6 TraesCS2A01G545600 chr2D 89.474 133 8 5 5353 5482 622922334 622922205 4.440000e-36 163.0
7 TraesCS2A01G545600 chr2D 95.122 41 2 0 5053 5093 622922655 622922615 1.290000e-06 65.8
8 TraesCS2A01G545600 chr2B 89.627 2410 189 37 1581 3969 765072458 765070089 0.000000e+00 3009.0
9 TraesCS2A01G545600 chr2B 88.928 858 51 15 4193 5021 765069903 765069061 0.000000e+00 1018.0
10 TraesCS2A01G545600 chr2B 86.712 888 61 38 555 1395 765073491 765072614 0.000000e+00 933.0
11 TraesCS2A01G545600 chr2B 86.176 557 70 7 1684 2236 482186801 482187354 3.700000e-166 595.0
12 TraesCS2A01G545600 chr2B 92.032 251 20 0 1930 2180 700134119 700134369 2.460000e-93 353.0
13 TraesCS2A01G545600 chr2B 90.837 251 23 0 1930 2180 512021559 512021809 2.470000e-88 337.0
14 TraesCS2A01G545600 chr2B 84.536 194 26 3 2535 2727 43958839 43959029 7.330000e-44 189.0
15 TraesCS2A01G545600 chr2B 94.872 117 3 1 5415 5528 765068482 765068366 4.410000e-41 180.0
16 TraesCS2A01G545600 chr2B 89.024 82 6 1 5189 5267 765068870 765068789 1.270000e-16 99.0
17 TraesCS2A01G545600 chr1A 93.227 251 17 0 1930 2180 34148876 34148626 2.440000e-98 370.0
18 TraesCS2A01G545600 chr1A 98.649 74 1 0 5273 5346 554455202 554455129 1.250000e-26 132.0
19 TraesCS2A01G545600 chr6B 92.430 251 19 0 1930 2180 548199461 548199711 5.280000e-95 359.0
20 TraesCS2A01G545600 chr6B 87.879 99 12 0 3033 3131 114363306 114363208 3.510000e-22 117.0
21 TraesCS2A01G545600 chr7B 90.517 232 17 2 4820 5046 62791365 62791596 9.030000e-78 302.0
22 TraesCS2A01G545600 chr7B 92.414 145 9 2 4566 4708 62791216 62791360 7.280000e-49 206.0
23 TraesCS2A01G545600 chr7B 98.649 74 1 0 5273 5346 662744488 662744415 1.250000e-26 132.0
24 TraesCS2A01G545600 chr7B 91.463 82 7 0 5052 5133 62791526 62791607 4.540000e-21 113.0
25 TraesCS2A01G545600 chr7B 89.024 82 9 0 1623 1704 725213421 725213502 9.830000e-18 102.0
26 TraesCS2A01G545600 chr7B 91.304 69 3 1 5189 5254 62791742 62791810 2.130000e-14 91.6
27 TraesCS2A01G545600 chr5D 76.673 523 101 13 2003 2507 534612395 534611876 2.550000e-68 270.0
28 TraesCS2A01G545600 chr5D 98.649 74 1 0 5273 5346 503324041 503324114 1.250000e-26 132.0
29 TraesCS2A01G545600 chr5D 89.899 99 10 0 3033 3131 534611301 534611203 1.620000e-25 128.0
30 TraesCS2A01G545600 chr5D 90.909 77 7 0 1623 1699 433039275 433039351 2.730000e-18 104.0
31 TraesCS2A01G545600 chr1D 94.375 160 9 0 2021 2180 211214779 211214620 4.290000e-61 246.0
32 TraesCS2A01G545600 chr1D 98.649 74 1 0 5273 5346 244194452 244194525 1.250000e-26 132.0
33 TraesCS2A01G545600 chr4A 86.528 193 23 3 2536 2727 707655518 707655708 5.630000e-50 209.0
34 TraesCS2A01G545600 chr4A 89.899 99 10 0 3033 3131 636980236 636980334 1.620000e-25 128.0
35 TraesCS2A01G545600 chr4A 90.244 82 8 0 1623 1704 418427186 418427105 2.110000e-19 108.0
36 TraesCS2A01G545600 chrUn 98.649 74 1 0 5273 5346 298933375 298933302 1.250000e-26 132.0
37 TraesCS2A01G545600 chrUn 98.649 74 1 0 5273 5346 438111305 438111232 1.250000e-26 132.0
38 TraesCS2A01G545600 chr7D 98.649 74 1 0 5273 5346 231589746 231589819 1.250000e-26 132.0
39 TraesCS2A01G545600 chr7D 98.649 74 1 0 5273 5346 231592525 231592452 1.250000e-26 132.0
40 TraesCS2A01G545600 chr3D 98.649 74 1 0 5273 5346 24158692 24158765 1.250000e-26 132.0
41 TraesCS2A01G545600 chr5B 90.526 95 9 0 3037 3131 674659872 674659778 5.830000e-25 126.0
42 TraesCS2A01G545600 chr5B 89.796 98 10 0 3034 3131 676014271 676014368 5.830000e-25 126.0
43 TraesCS2A01G545600 chr7A 90.244 82 8 0 1623 1704 601862337 601862256 2.110000e-19 108.0
44 TraesCS2A01G545600 chr4D 89.024 82 9 0 1623 1704 292542423 292542504 9.830000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G545600 chr2A 754357253 754362796 5543 True 10238.000000 10238 100.000000 1 5544 1 chr2A.!!$R2 5543
1 TraesCS2A01G545600 chr2D 622922205 622927948 5743 True 1014.466667 4475 87.723167 1 5482 6 chr2D.!!$R1 5481
2 TraesCS2A01G545600 chr2B 765068366 765073491 5125 True 1047.800000 3009 89.832600 555 5528 5 chr2B.!!$R1 4973
3 TraesCS2A01G545600 chr2B 482186801 482187354 553 False 595.000000 595 86.176000 1684 2236 1 chr2B.!!$F2 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 241 0.032615 TTGTTGTTGTGGGAGCCCTT 60.033 50.0 7.16 0.0 36.94 3.95 F
1488 1777 0.036952 CGTGCTCCCATCTGTGAACT 60.037 55.0 0.00 0.0 0.00 3.01 F
1775 2082 0.035739 TGGGCCGTTCTAAGTGGAAC 59.964 55.0 0.00 0.0 41.31 3.62 F
3583 3902 0.460811 TCATCACTGACGATGCTGCC 60.461 55.0 0.00 0.0 42.15 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 2063 0.035739 GTTCCACTTAGAACGGCCCA 59.964 55.0 0.00 0.00 37.04 5.36 R
3034 3350 0.405198 TCCCAATCTTCAGGCTGCAA 59.595 50.0 10.34 4.48 0.00 4.08 R
3738 4058 0.249699 TCTTCTTTTCAGCCGCGTCA 60.250 50.0 4.92 0.00 0.00 4.35 R
5049 5536 0.174845 TCGGTTGCTCCTGGTTATCG 59.825 55.0 0.00 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 89 2.793278 AATTCGGCAAGACAACCAAC 57.207 45.000 0.00 0.00 0.00 3.77
89 93 1.363807 GGCAAGACAACCAACTGCC 59.636 57.895 0.00 0.00 0.00 4.85
98 102 2.092429 ACAACCAACTGCCTCTTGAAGA 60.092 45.455 0.00 0.00 0.00 2.87
105 109 4.429854 ACTGCCTCTTGAAGAAGAAACT 57.570 40.909 0.00 0.00 37.77 2.66
106 110 5.552870 ACTGCCTCTTGAAGAAGAAACTA 57.447 39.130 0.00 0.00 37.77 2.24
113 117 7.041098 GCCTCTTGAAGAAGAAACTAAACATGA 60.041 37.037 0.00 0.00 37.77 3.07
116 120 8.840321 TCTTGAAGAAGAAACTAAACATGAAGG 58.160 33.333 0.00 0.00 35.14 3.46
120 124 9.617975 GAAGAAGAAACTAAACATGAAGGAATG 57.382 33.333 0.00 0.00 0.00 2.67
127 131 8.924511 AACTAAACATGAAGGAATGAAAGAGA 57.075 30.769 0.00 0.00 0.00 3.10
134 138 7.174599 ACATGAAGGAATGAAAGAGAAACAGAG 59.825 37.037 0.00 0.00 0.00 3.35
149 153 2.156098 AGAGGCAAGAAGGGTGGCA 61.156 57.895 0.67 0.00 43.68 4.92
158 162 0.608035 GAAGGGTGGCACCATCGAAA 60.608 55.000 35.69 0.00 41.02 3.46
159 163 0.178975 AAGGGTGGCACCATCGAAAA 60.179 50.000 35.69 0.00 41.02 2.29
160 164 0.039618 AGGGTGGCACCATCGAAAAT 59.960 50.000 35.69 9.63 41.02 1.82
161 165 0.173255 GGGTGGCACCATCGAAAATG 59.827 55.000 35.69 0.00 41.02 2.32
162 166 0.458370 GGTGGCACCATCGAAAATGC 60.458 55.000 31.26 9.07 38.42 3.56
163 167 0.243365 GTGGCACCATCGAAAATGCA 59.757 50.000 6.29 0.00 39.92 3.96
164 168 1.135024 GTGGCACCATCGAAAATGCAT 60.135 47.619 6.29 0.00 39.92 3.96
165 169 1.549620 TGGCACCATCGAAAATGCATT 59.450 42.857 5.99 5.99 39.92 3.56
166 170 2.195922 GGCACCATCGAAAATGCATTC 58.804 47.619 13.38 0.56 39.92 2.67
167 171 2.417107 GGCACCATCGAAAATGCATTCA 60.417 45.455 13.38 0.00 39.92 2.57
168 172 3.450578 GCACCATCGAAAATGCATTCAT 58.549 40.909 13.38 4.80 38.00 2.57
169 173 4.499526 GGCACCATCGAAAATGCATTCATA 60.500 41.667 13.38 0.00 39.92 2.15
170 174 5.042593 GCACCATCGAAAATGCATTCATAA 58.957 37.500 13.38 0.00 38.00 1.90
171 175 5.693104 GCACCATCGAAAATGCATTCATAAT 59.307 36.000 13.38 2.14 38.00 1.28
172 176 6.201425 GCACCATCGAAAATGCATTCATAATT 59.799 34.615 13.38 2.35 38.00 1.40
173 177 7.568134 GCACCATCGAAAATGCATTCATAATTC 60.568 37.037 13.38 11.16 38.00 2.17
174 178 7.435784 CACCATCGAAAATGCATTCATAATTCA 59.564 33.333 13.38 4.34 32.53 2.57
203 207 7.485913 GCATTCATAATTCATTGTCGTTGTCTT 59.514 33.333 0.00 0.00 0.00 3.01
205 209 7.905604 TCATAATTCATTGTCGTTGTCTTCT 57.094 32.000 0.00 0.00 0.00 2.85
207 211 8.783093 TCATAATTCATTGTCGTTGTCTTCTTT 58.217 29.630 0.00 0.00 0.00 2.52
208 212 9.398170 CATAATTCATTGTCGTTGTCTTCTTTT 57.602 29.630 0.00 0.00 0.00 2.27
209 213 9.965824 ATAATTCATTGTCGTTGTCTTCTTTTT 57.034 25.926 0.00 0.00 0.00 1.94
230 234 4.329462 TTTTATTGTTGTTGTGGGAGCC 57.671 40.909 0.00 0.00 0.00 4.70
233 241 0.032615 TTGTTGTTGTGGGAGCCCTT 60.033 50.000 7.16 0.00 36.94 3.95
239 247 1.352622 TTGTGGGAGCCCTTGTCAGT 61.353 55.000 7.16 0.00 36.94 3.41
251 259 3.058224 CCCTTGTCAGTCGTTCCATTTTC 60.058 47.826 0.00 0.00 0.00 2.29
262 277 4.158949 TCGTTCCATTTTCACTATCGAGGA 59.841 41.667 0.00 0.00 0.00 3.71
274 289 5.056480 CACTATCGAGGATGGCAATTGTTA 58.944 41.667 7.40 0.00 0.00 2.41
275 290 5.702670 CACTATCGAGGATGGCAATTGTTAT 59.297 40.000 7.40 1.81 0.00 1.89
277 292 2.618241 TCGAGGATGGCAATTGTTATGC 59.382 45.455 7.40 7.30 43.08 3.14
283 298 1.615883 TGGCAATTGTTATGCGTTGGT 59.384 42.857 7.40 0.00 44.75 3.67
317 332 2.935238 GCGAGTACTTGGGCTGATTTCA 60.935 50.000 12.18 0.00 0.00 2.69
321 336 1.928868 ACTTGGGCTGATTTCAAGGG 58.071 50.000 0.00 0.00 41.35 3.95
347 362 3.495729 GGGGGATGGACAGTGTGT 58.504 61.111 0.00 0.00 0.00 3.72
348 363 1.002134 GGGGGATGGACAGTGTGTG 60.002 63.158 0.00 0.00 0.00 3.82
349 364 1.761174 GGGGATGGACAGTGTGTGT 59.239 57.895 0.00 0.00 44.49 3.72
350 365 0.606401 GGGGATGGACAGTGTGTGTG 60.606 60.000 0.00 0.00 40.56 3.82
354 369 2.972505 GGACAGTGTGTGTGCGGG 60.973 66.667 0.00 0.00 40.56 6.13
355 370 3.649986 GACAGTGTGTGTGCGGGC 61.650 66.667 0.00 0.00 40.56 6.13
371 386 4.637771 GCGGGGAGCTGTTTGTAT 57.362 55.556 0.00 0.00 44.04 2.29
372 387 2.394604 GCGGGGAGCTGTTTGTATC 58.605 57.895 0.00 0.00 44.04 2.24
373 388 1.429148 GCGGGGAGCTGTTTGTATCG 61.429 60.000 0.00 0.00 44.04 2.92
374 389 0.810031 CGGGGAGCTGTTTGTATCGG 60.810 60.000 0.00 0.00 0.00 4.18
375 390 0.252197 GGGGAGCTGTTTGTATCGGT 59.748 55.000 0.00 0.00 0.00 4.69
376 391 1.339727 GGGGAGCTGTTTGTATCGGTT 60.340 52.381 0.00 0.00 0.00 4.44
377 392 2.433436 GGGAGCTGTTTGTATCGGTTT 58.567 47.619 0.00 0.00 0.00 3.27
378 393 2.817844 GGGAGCTGTTTGTATCGGTTTT 59.182 45.455 0.00 0.00 0.00 2.43
379 394 3.254903 GGGAGCTGTTTGTATCGGTTTTT 59.745 43.478 0.00 0.00 0.00 1.94
402 417 8.475331 TTTTGTTTTTCGTAAATTAGTTGGCA 57.525 26.923 0.00 0.00 0.00 4.92
403 418 8.475331 TTTGTTTTTCGTAAATTAGTTGGCAA 57.525 26.923 0.00 0.00 0.00 4.52
404 419 7.452630 TGTTTTTCGTAAATTAGTTGGCAAC 57.547 32.000 22.48 22.48 0.00 4.17
405 420 6.476053 TGTTTTTCGTAAATTAGTTGGCAACC 59.524 34.615 25.81 8.46 0.00 3.77
406 421 5.769484 TTTCGTAAATTAGTTGGCAACCA 57.231 34.783 25.81 10.93 0.00 3.67
407 422 5.968528 TTCGTAAATTAGTTGGCAACCAT 57.031 34.783 25.81 15.73 31.53 3.55
408 423 5.554822 TCGTAAATTAGTTGGCAACCATC 57.445 39.130 25.81 1.80 31.53 3.51
417 616 4.985538 AGTTGGCAACCATCTTCTTCTTA 58.014 39.130 25.81 0.00 30.21 2.10
418 617 5.385198 AGTTGGCAACCATCTTCTTCTTAA 58.615 37.500 25.81 0.00 30.21 1.85
419 618 5.833131 AGTTGGCAACCATCTTCTTCTTAAA 59.167 36.000 25.81 0.00 30.21 1.52
420 619 6.494835 AGTTGGCAACCATCTTCTTCTTAAAT 59.505 34.615 25.81 0.00 30.21 1.40
426 625 7.857885 GCAACCATCTTCTTCTTAAATAATCGG 59.142 37.037 0.00 0.00 0.00 4.18
450 649 7.379262 CGGTTAGGTTAAACAACCAAAATACAC 59.621 37.037 18.72 0.00 45.23 2.90
477 676 8.967218 CAACAAACTCTGTATTTTACCATTGTG 58.033 33.333 0.00 0.00 37.23 3.33
480 679 7.687941 AACTCTGTATTTTACCATTGTGAGG 57.312 36.000 0.00 0.00 0.00 3.86
491 690 0.186873 ATTGTGAGGCCATCCATCCC 59.813 55.000 5.01 0.00 33.74 3.85
497 696 0.402419 AGGCCATCCATCCCAGATCA 60.402 55.000 5.01 0.00 33.74 2.92
504 703 4.447325 CCATCCATCCCAGATCAGTGATTT 60.447 45.833 7.16 0.00 0.00 2.17
545 748 3.494254 GTCCCACCCCACACCACA 61.494 66.667 0.00 0.00 0.00 4.17
547 750 4.596585 CCCACCCCACACCACACC 62.597 72.222 0.00 0.00 0.00 4.16
549 752 4.947147 CACCCCACACCACACCCG 62.947 72.222 0.00 0.00 0.00 5.28
610 826 0.792640 GCATATTCGCATCTGACCCG 59.207 55.000 0.00 0.00 0.00 5.28
615 831 0.173481 TTCGCATCTGACCCGAGAAG 59.827 55.000 2.49 0.00 32.14 2.85
703 930 1.899534 CGGCCAAACCCCTCGAAAA 60.900 57.895 2.24 0.00 33.26 2.29
718 945 2.600470 AAAAACCTCGGGCTGGGC 60.600 61.111 0.00 0.00 0.00 5.36
961 1189 2.339275 ATCGGATCGGGGAAAAGGCC 62.339 60.000 0.00 0.00 0.00 5.19
1107 1344 2.037251 CCAGGAGAAGTTCGAAGGTGAA 59.963 50.000 0.00 0.00 0.00 3.18
1124 1378 3.312989 AACCTCCCCGTCCGATCCT 62.313 63.158 0.00 0.00 0.00 3.24
1134 1388 2.353505 CCGTCCGATCCTATCTCGAGTA 60.354 54.545 13.13 3.58 38.38 2.59
1135 1389 2.924926 CGTCCGATCCTATCTCGAGTAG 59.075 54.545 13.13 12.69 38.38 2.57
1138 1392 2.417239 CCGATCCTATCTCGAGTAGTGC 59.583 54.545 13.13 4.72 38.38 4.40
1139 1393 3.331150 CGATCCTATCTCGAGTAGTGCT 58.669 50.000 13.13 0.00 38.38 4.40
1140 1394 3.124466 CGATCCTATCTCGAGTAGTGCTG 59.876 52.174 13.13 1.96 38.38 4.41
1141 1395 3.562343 TCCTATCTCGAGTAGTGCTGT 57.438 47.619 13.13 0.00 0.00 4.40
1142 1396 3.468770 TCCTATCTCGAGTAGTGCTGTC 58.531 50.000 13.13 0.00 0.00 3.51
1191 1455 0.460311 GGTTCCGATCCGTGATCTGT 59.540 55.000 10.77 0.00 36.96 3.41
1222 1487 1.135315 CATTTCGGTCCTTGCTGCG 59.865 57.895 0.00 0.00 0.00 5.18
1240 1505 1.996798 CGGGCTGTTAGGGATCTAGA 58.003 55.000 0.00 0.00 0.00 2.43
1265 1538 4.862350 TGTCTGCTTCATGTTGAATTGTG 58.138 39.130 0.00 0.00 35.59 3.33
1302 1575 2.351738 CGTTCTCCATTTTTGGCTGGTC 60.352 50.000 0.00 0.00 34.03 4.02
1316 1589 0.457443 CTGGTCGCTGCTGTGATCTA 59.543 55.000 16.98 5.98 35.04 1.98
1344 1617 5.250235 TCTGAATCTGACGCTAGGTTAAG 57.750 43.478 0.00 0.00 0.00 1.85
1347 1620 2.941453 TCTGACGCTAGGTTAAGCTG 57.059 50.000 17.34 8.33 40.49 4.24
1350 1623 3.119291 CTGACGCTAGGTTAAGCTGATG 58.881 50.000 17.34 8.57 40.49 3.07
1359 1632 4.837972 AGGTTAAGCTGATGTCTTCTTCC 58.162 43.478 6.33 0.00 0.00 3.46
1367 1640 4.248859 CTGATGTCTTCTTCCATGACGTT 58.751 43.478 0.00 0.00 32.79 3.99
1375 1648 3.006940 TCTTCCATGACGTTAATGTGGC 58.993 45.455 4.71 0.00 0.00 5.01
1389 1664 4.812814 TGGCGACACATGATCTCG 57.187 55.556 0.00 3.35 33.40 4.04
1395 1670 1.335182 CGACACATGATCTCGTAGCCT 59.665 52.381 0.00 0.00 0.00 4.58
1396 1671 2.736978 GACACATGATCTCGTAGCCTG 58.263 52.381 0.00 0.00 0.00 4.85
1397 1672 1.410517 ACACATGATCTCGTAGCCTGG 59.589 52.381 0.00 0.00 0.00 4.45
1398 1673 1.410517 CACATGATCTCGTAGCCTGGT 59.589 52.381 0.00 0.00 0.00 4.00
1407 1696 0.659427 CGTAGCCTGGTTGATGCATG 59.341 55.000 2.46 0.00 0.00 4.06
1408 1697 1.027357 GTAGCCTGGTTGATGCATGG 58.973 55.000 2.46 0.00 0.00 3.66
1410 1699 2.056223 GCCTGGTTGATGCATGGCT 61.056 57.895 14.51 0.00 37.58 4.75
1411 1700 1.610554 GCCTGGTTGATGCATGGCTT 61.611 55.000 14.51 0.00 37.58 4.35
1412 1701 0.458669 CCTGGTTGATGCATGGCTTC 59.541 55.000 2.46 0.00 34.04 3.86
1427 1716 2.079158 GGCTTCGTGGGTTTTAGTACC 58.921 52.381 0.00 0.00 37.47 3.34
1436 1725 2.142319 GGTTTTAGTACCGGCGAAACA 58.858 47.619 9.30 0.00 33.17 2.83
1439 1728 4.213674 GTTTTAGTACCGGCGAAACAAAG 58.786 43.478 9.30 0.00 32.14 2.77
1454 1743 6.678900 GCGAAACAAAGCCAATCTAGATTCAT 60.679 38.462 15.24 1.68 0.00 2.57
1457 1746 4.340381 ACAAAGCCAATCTAGATTCATGGC 59.660 41.667 28.53 28.53 37.54 4.40
1459 1748 4.018484 AGCCAATCTAGATTCATGGCTC 57.982 45.455 31.12 14.27 41.21 4.70
1460 1749 2.740981 GCCAATCTAGATTCATGGCTCG 59.259 50.000 28.48 12.05 35.62 5.03
1461 1750 3.805108 GCCAATCTAGATTCATGGCTCGT 60.805 47.826 28.48 0.86 35.62 4.18
1462 1751 4.384056 CCAATCTAGATTCATGGCTCGTT 58.616 43.478 15.24 0.00 0.00 3.85
1463 1752 4.450419 CCAATCTAGATTCATGGCTCGTTC 59.550 45.833 15.24 0.00 0.00 3.95
1465 1754 5.543507 ATCTAGATTCATGGCTCGTTCTT 57.456 39.130 0.00 0.00 0.00 2.52
1466 1755 4.938080 TCTAGATTCATGGCTCGTTCTTC 58.062 43.478 0.00 0.00 0.00 2.87
1473 1762 0.944311 TGGCTCGTTCTTCTTCGTGC 60.944 55.000 0.00 0.00 42.88 5.34
1477 1766 0.038526 TCGTTCTTCTTCGTGCTCCC 60.039 55.000 0.00 0.00 0.00 4.30
1478 1767 0.319555 CGTTCTTCTTCGTGCTCCCA 60.320 55.000 0.00 0.00 0.00 4.37
1479 1768 1.673033 CGTTCTTCTTCGTGCTCCCAT 60.673 52.381 0.00 0.00 0.00 4.00
1480 1769 2.003301 GTTCTTCTTCGTGCTCCCATC 58.997 52.381 0.00 0.00 0.00 3.51
1481 1770 1.561643 TCTTCTTCGTGCTCCCATCT 58.438 50.000 0.00 0.00 0.00 2.90
1482 1771 1.205655 TCTTCTTCGTGCTCCCATCTG 59.794 52.381 0.00 0.00 0.00 2.90
1483 1772 0.976641 TTCTTCGTGCTCCCATCTGT 59.023 50.000 0.00 0.00 0.00 3.41
1484 1773 0.247460 TCTTCGTGCTCCCATCTGTG 59.753 55.000 0.00 0.00 0.00 3.66
1486 1775 0.684535 TTCGTGCTCCCATCTGTGAA 59.315 50.000 0.00 0.00 0.00 3.18
1487 1776 0.037326 TCGTGCTCCCATCTGTGAAC 60.037 55.000 0.00 0.00 0.00 3.18
1488 1777 0.036952 CGTGCTCCCATCTGTGAACT 60.037 55.000 0.00 0.00 0.00 3.01
1489 1778 1.731720 GTGCTCCCATCTGTGAACTC 58.268 55.000 0.00 0.00 0.00 3.01
1490 1779 1.277557 GTGCTCCCATCTGTGAACTCT 59.722 52.381 0.00 0.00 0.00 3.24
1492 1781 1.277557 GCTCCCATCTGTGAACTCTGT 59.722 52.381 0.00 0.00 0.00 3.41
1493 1782 2.934364 GCTCCCATCTGTGAACTCTGTG 60.934 54.545 0.00 0.00 0.00 3.66
1494 1783 2.301296 CTCCCATCTGTGAACTCTGTGT 59.699 50.000 0.00 0.00 0.00 3.72
1495 1784 2.037641 TCCCATCTGTGAACTCTGTGTG 59.962 50.000 0.00 0.00 0.00 3.82
1496 1785 1.802960 CCATCTGTGAACTCTGTGTGC 59.197 52.381 0.00 0.00 0.00 4.57
1497 1786 1.802960 CATCTGTGAACTCTGTGTGCC 59.197 52.381 0.00 0.00 0.00 5.01
1501 1790 1.344438 TGTGAACTCTGTGTGCCCTAG 59.656 52.381 0.00 0.00 0.00 3.02
1502 1791 1.344763 GTGAACTCTGTGTGCCCTAGT 59.655 52.381 0.00 0.00 0.00 2.57
1503 1792 1.344438 TGAACTCTGTGTGCCCTAGTG 59.656 52.381 0.00 0.00 0.00 2.74
1504 1793 1.344763 GAACTCTGTGTGCCCTAGTGT 59.655 52.381 0.00 0.00 0.00 3.55
1505 1794 1.424638 ACTCTGTGTGCCCTAGTGTT 58.575 50.000 0.00 0.00 0.00 3.32
1506 1795 2.605257 ACTCTGTGTGCCCTAGTGTTA 58.395 47.619 0.00 0.00 0.00 2.41
1507 1796 2.299297 ACTCTGTGTGCCCTAGTGTTAC 59.701 50.000 0.00 0.00 0.00 2.50
1508 1797 2.299013 CTCTGTGTGCCCTAGTGTTACA 59.701 50.000 0.00 0.00 0.00 2.41
1509 1798 2.903784 TCTGTGTGCCCTAGTGTTACAT 59.096 45.455 0.00 0.00 0.00 2.29
1510 1799 3.002791 CTGTGTGCCCTAGTGTTACATG 58.997 50.000 0.00 0.00 0.00 3.21
1511 1800 1.737793 GTGTGCCCTAGTGTTACATGC 59.262 52.381 0.00 0.00 0.00 4.06
1512 1801 1.006832 GTGCCCTAGTGTTACATGCG 58.993 55.000 0.00 0.00 0.00 4.73
1513 1802 0.742990 TGCCCTAGTGTTACATGCGC 60.743 55.000 0.00 0.00 0.00 6.09
1514 1803 0.742990 GCCCTAGTGTTACATGCGCA 60.743 55.000 14.96 14.96 0.00 6.09
1515 1804 1.953559 CCCTAGTGTTACATGCGCAT 58.046 50.000 19.28 19.28 0.00 4.73
1516 1805 2.288666 CCCTAGTGTTACATGCGCATT 58.711 47.619 22.81 14.69 0.00 3.56
1517 1806 2.682856 CCCTAGTGTTACATGCGCATTT 59.317 45.455 22.81 18.21 0.00 2.32
1518 1807 3.874543 CCCTAGTGTTACATGCGCATTTA 59.125 43.478 22.81 16.95 0.00 1.40
1519 1808 4.024893 CCCTAGTGTTACATGCGCATTTAG 60.025 45.833 22.81 12.72 0.00 1.85
1520 1809 4.570772 CCTAGTGTTACATGCGCATTTAGT 59.429 41.667 22.81 18.28 0.00 2.24
1521 1810 4.340894 AGTGTTACATGCGCATTTAGTG 57.659 40.909 22.81 13.76 0.00 2.74
1522 1811 3.751175 AGTGTTACATGCGCATTTAGTGT 59.249 39.130 22.81 19.33 0.00 3.55
1523 1812 4.215399 AGTGTTACATGCGCATTTAGTGTT 59.785 37.500 22.81 1.73 0.00 3.32
1524 1813 4.320690 GTGTTACATGCGCATTTAGTGTTG 59.679 41.667 22.81 11.27 0.00 3.33
1525 1814 4.214332 TGTTACATGCGCATTTAGTGTTGA 59.786 37.500 22.81 6.46 0.00 3.18
1526 1815 5.106357 TGTTACATGCGCATTTAGTGTTGAT 60.106 36.000 22.81 2.25 0.00 2.57
1527 1816 4.019919 ACATGCGCATTTAGTGTTGATC 57.980 40.909 22.81 0.00 0.00 2.92
1528 1817 3.439825 ACATGCGCATTTAGTGTTGATCA 59.560 39.130 22.81 0.00 0.00 2.92
1529 1818 4.082841 ACATGCGCATTTAGTGTTGATCAA 60.083 37.500 22.81 3.38 0.00 2.57
1530 1819 3.820689 TGCGCATTTAGTGTTGATCAAC 58.179 40.909 28.10 28.10 41.50 3.18
1531 1820 2.840176 GCGCATTTAGTGTTGATCAACG 59.160 45.455 28.55 16.86 43.94 4.10
1547 1836 2.159585 TCAACGCTTTATGGCAATCACG 60.160 45.455 0.00 0.00 0.00 4.35
1550 1839 1.592110 CGCTTTATGGCAATCACGTCG 60.592 52.381 0.00 0.00 0.00 5.12
1571 1860 3.541516 CGTTTCAGTTCGAGTGTTGTCAC 60.542 47.826 0.00 0.00 44.15 3.67
1580 1869 3.888093 GTGTTGTCACTCGCTACCT 57.112 52.632 0.00 0.00 40.98 3.08
1581 1870 1.419374 GTGTTGTCACTCGCTACCTG 58.581 55.000 0.00 0.00 40.98 4.00
1582 1871 1.037493 TGTTGTCACTCGCTACCTGT 58.963 50.000 0.00 0.00 0.00 4.00
1583 1872 1.000607 TGTTGTCACTCGCTACCTGTC 60.001 52.381 0.00 0.00 0.00 3.51
1584 1873 1.000607 GTTGTCACTCGCTACCTGTCA 60.001 52.381 0.00 0.00 0.00 3.58
1610 1899 7.559486 TGATAGATCATGCCTGTTCCATATAC 58.441 38.462 0.00 0.00 0.00 1.47
1611 1900 5.830799 AGATCATGCCTGTTCCATATACA 57.169 39.130 0.00 0.00 0.00 2.29
1612 1901 5.802465 AGATCATGCCTGTTCCATATACAG 58.198 41.667 0.00 0.00 42.06 2.74
1614 1903 5.372343 TCATGCCTGTTCCATATACAGTT 57.628 39.130 0.00 0.00 41.08 3.16
1616 1905 6.186957 TCATGCCTGTTCCATATACAGTTTT 58.813 36.000 0.00 0.00 41.08 2.43
1654 1943 4.081087 AGGACATACTAGAAACGGCATTGT 60.081 41.667 0.00 0.00 0.00 2.71
1664 1953 0.951558 ACGGCATTGTTCTGTCAACC 59.048 50.000 0.00 0.00 0.00 3.77
1703 1992 5.222048 ACAGAACCTGGGCAGTTAAATCTTA 60.222 40.000 0.00 0.00 35.51 2.10
1704 1993 5.123979 CAGAACCTGGGCAGTTAAATCTTAC 59.876 44.000 0.00 0.00 0.00 2.34
1709 2016 6.184789 CCTGGGCAGTTAAATCTTACCTTAA 58.815 40.000 0.00 0.00 0.00 1.85
1759 2066 9.337396 TGTTTACTGTATATCTGCTATTTTGGG 57.663 33.333 0.00 0.00 0.00 4.12
1760 2067 7.979444 TTACTGTATATCTGCTATTTTGGGC 57.021 36.000 0.00 0.00 0.00 5.36
1761 2068 5.316987 ACTGTATATCTGCTATTTTGGGCC 58.683 41.667 0.00 0.00 0.00 5.80
1763 2070 3.508845 ATATCTGCTATTTTGGGCCGT 57.491 42.857 0.00 0.00 0.00 5.68
1764 2071 2.143876 ATCTGCTATTTTGGGCCGTT 57.856 45.000 0.00 0.00 0.00 4.44
1765 2072 1.459450 TCTGCTATTTTGGGCCGTTC 58.541 50.000 0.00 0.00 0.00 3.95
1768 2075 3.013921 CTGCTATTTTGGGCCGTTCTAA 58.986 45.455 0.00 0.00 0.00 2.10
1769 2076 3.013921 TGCTATTTTGGGCCGTTCTAAG 58.986 45.455 0.00 0.00 0.00 2.18
1770 2077 3.014623 GCTATTTTGGGCCGTTCTAAGT 58.985 45.455 0.00 0.00 0.00 2.24
1771 2078 3.181500 GCTATTTTGGGCCGTTCTAAGTG 60.181 47.826 0.00 0.00 0.00 3.16
1772 2079 1.611519 TTTTGGGCCGTTCTAAGTGG 58.388 50.000 0.00 0.00 0.00 4.00
1774 2081 0.766131 TTGGGCCGTTCTAAGTGGAA 59.234 50.000 0.00 0.00 0.00 3.53
1775 2082 0.035739 TGGGCCGTTCTAAGTGGAAC 59.964 55.000 0.00 0.00 41.31 3.62
1928 2237 1.981495 CCCAAACTTCTCTCCACCTCT 59.019 52.381 0.00 0.00 0.00 3.69
1992 2302 5.507637 ACTGATGAAGCCTTGATTCTTGAT 58.492 37.500 0.00 0.00 0.00 2.57
1996 2306 6.318144 TGATGAAGCCTTGATTCTTGATTCTC 59.682 38.462 0.00 0.00 0.00 2.87
2083 2394 2.684881 CAGCAACAAGGACAAGACACTT 59.315 45.455 0.00 0.00 0.00 3.16
2182 2493 1.468914 GACCAGAAGAAATTCGGTGGC 59.531 52.381 10.04 2.41 31.50 5.01
2233 2545 1.068748 GTTCTTGTGCTGATGTGCCTG 60.069 52.381 0.00 0.00 0.00 4.85
2235 2547 1.228337 TTGTGCTGATGTGCCTGCT 60.228 52.632 0.00 0.00 33.03 4.24
2245 2557 0.686789 TGTGCCTGCTCTCTGCTTAA 59.313 50.000 0.00 0.00 43.37 1.85
2271 2583 8.495361 TTTACTGAACTTGTACTTTTGTGCTA 57.505 30.769 0.00 0.00 35.99 3.49
2335 2647 6.295916 CCAAGAAGGTTCACACTATCCTTACT 60.296 42.308 0.00 0.00 39.91 2.24
2383 2695 3.112709 GACGTGCCTTGCGAGACC 61.113 66.667 1.22 0.00 0.00 3.85
2452 2764 6.183360 CCACATACAGCATTCTCATTGACAAT 60.183 38.462 0.00 0.00 0.00 2.71
2537 2849 3.518303 GGACCCAGAAGCTAAGAAGGTAA 59.482 47.826 0.00 0.00 31.75 2.85
2548 2860 6.543735 AGCTAAGAAGGTAAATTGTGGAGTT 58.456 36.000 0.00 0.00 0.00 3.01
2554 2866 5.200368 AGGTAAATTGTGGAGTTTGCTTG 57.800 39.130 0.00 0.00 0.00 4.01
2577 2889 7.608308 TGTAATTTTGTTGCTTGCTCTTTTT 57.392 28.000 0.00 0.00 0.00 1.94
2618 2930 1.755959 TGTTTTGTGATTGCAGCCAGT 59.244 42.857 0.00 0.00 0.00 4.00
2652 2964 3.456277 ACAAGGAGTACATTCCTGATCCC 59.544 47.826 4.51 0.00 46.90 3.85
2675 2987 1.174783 GACGTCAAGCCAGAGGTAGA 58.825 55.000 11.55 0.00 36.82 2.59
2702 3014 9.959749 TTTCTTTGTTTCTACAATGTTGATACC 57.040 29.630 13.33 0.85 43.43 2.73
2847 3161 2.247311 GCACAGTGCGGTTAGAAATG 57.753 50.000 10.47 0.00 31.71 2.32
2851 3165 3.684305 CACAGTGCGGTTAGAAATGATCA 59.316 43.478 0.00 0.00 0.00 2.92
2861 3175 7.571983 GCGGTTAGAAATGATCACCATATCTTG 60.572 40.741 0.00 0.00 34.45 3.02
2989 3305 7.724205 CGTAGCTTGATATGTCATTGTATGTC 58.276 38.462 0.00 0.00 33.56 3.06
3034 3350 8.584157 TGTTTTAACATTCCTTGCTGTGATTAT 58.416 29.630 0.00 0.00 33.17 1.28
3045 3361 2.424601 GCTGTGATTATTGCAGCCTGAA 59.575 45.455 0.00 0.00 46.93 3.02
3175 3491 5.060077 CAGAAACACTTTAATCAGCAATGCG 59.940 40.000 0.00 0.00 0.00 4.73
3304 3620 3.181436 CCTGGAACCGGACCTAGTATCTA 60.181 52.174 9.46 0.00 0.00 1.98
3355 3672 8.548721 GTTTTGGGTAGTGAATTATATGACTCG 58.451 37.037 0.00 0.00 0.00 4.18
3513 3832 5.063944 CAGGAAGACGGAACAAATAGTCATG 59.936 44.000 0.00 0.00 36.18 3.07
3583 3902 0.460811 TCATCACTGACGATGCTGCC 60.461 55.000 0.00 0.00 42.15 4.85
3636 3955 3.480470 CCAAGCATAAGGAGGTATGGTG 58.520 50.000 0.00 0.00 40.43 4.17
3645 3965 3.898482 AGGAGGTATGGTGCATTTTACC 58.102 45.455 11.83 11.83 38.71 2.85
3662 3982 7.148340 GCATTTTACCTAGCATCATCTATCACC 60.148 40.741 0.00 0.00 0.00 4.02
3664 3984 7.618019 TTTACCTAGCATCATCTATCACCTT 57.382 36.000 0.00 0.00 0.00 3.50
3665 3985 8.721133 TTTACCTAGCATCATCTATCACCTTA 57.279 34.615 0.00 0.00 0.00 2.69
3666 3986 8.901472 TTACCTAGCATCATCTATCACCTTAT 57.099 34.615 0.00 0.00 0.00 1.73
3685 4005 8.252417 CACCTTATCATTTGATTGTTGATCCAA 58.748 33.333 0.00 0.00 36.05 3.53
3738 4058 0.112025 AGGCTGAGAAGGCTGCTTTT 59.888 50.000 0.00 0.00 43.35 2.27
3744 4064 1.441016 GAAGGCTGCTTTTGACGCG 60.441 57.895 3.53 3.53 0.00 6.01
3783 4103 1.564348 GAGGAGGTAAATTCCCTGGCA 59.436 52.381 1.51 0.00 35.20 4.92
3875 4207 7.816640 TCCTGTTTATCAATCTTTGTGTTAGC 58.183 34.615 0.00 0.00 0.00 3.09
3878 4210 7.075121 TGTTTATCAATCTTTGTGTTAGCGTG 58.925 34.615 0.00 0.00 0.00 5.34
3883 4215 1.069296 TCTTTGTGTTAGCGTGCATGC 60.069 47.619 23.58 23.58 0.00 4.06
3890 4222 2.489722 TGTTAGCGTGCATGCCATTTTA 59.510 40.909 26.95 9.92 34.65 1.52
3994 4326 1.629043 GTCCTGTCCTGTCACTACCA 58.371 55.000 0.00 0.00 0.00 3.25
3996 4328 2.567615 GTCCTGTCCTGTCACTACCATT 59.432 50.000 0.00 0.00 0.00 3.16
3997 4329 3.767673 GTCCTGTCCTGTCACTACCATTA 59.232 47.826 0.00 0.00 0.00 1.90
3999 4331 3.769844 CCTGTCCTGTCACTACCATTAGT 59.230 47.826 0.00 0.00 39.30 2.24
4000 4332 4.142138 CCTGTCCTGTCACTACCATTAGTC 60.142 50.000 0.00 0.00 36.31 2.59
4002 4334 4.024670 GTCCTGTCACTACCATTAGTCCT 58.975 47.826 0.00 0.00 36.31 3.85
4004 4336 5.067544 GTCCTGTCACTACCATTAGTCCTAC 59.932 48.000 0.00 0.00 36.31 3.18
4039 4371 7.068103 CCCACTTCAATAAATGCAACCATAGTA 59.932 37.037 0.00 0.00 0.00 1.82
4092 4426 7.041440 TGTTTCTGGTATATGTCTGTTGTGTTG 60.041 37.037 0.00 0.00 0.00 3.33
4098 4432 2.700722 TGTCTGTTGTGTTGTGCCTA 57.299 45.000 0.00 0.00 0.00 3.93
4100 4434 2.877786 TGTCTGTTGTGTTGTGCCTATG 59.122 45.455 0.00 0.00 0.00 2.23
4105 4439 5.643348 TCTGTTGTGTTGTGCCTATGAATAG 59.357 40.000 0.00 0.00 0.00 1.73
4107 4441 3.949132 TGTGTTGTGCCTATGAATAGCA 58.051 40.909 0.00 0.00 0.00 3.49
4108 4442 3.940852 TGTGTTGTGCCTATGAATAGCAG 59.059 43.478 0.00 0.00 0.00 4.24
4109 4443 2.945008 TGTTGTGCCTATGAATAGCAGC 59.055 45.455 0.00 0.00 0.00 5.25
4110 4444 2.945008 GTTGTGCCTATGAATAGCAGCA 59.055 45.455 0.00 0.00 0.00 4.41
4112 4446 1.528586 GTGCCTATGAATAGCAGCACG 59.471 52.381 12.77 0.00 38.13 5.34
4113 4447 1.138859 TGCCTATGAATAGCAGCACGT 59.861 47.619 0.00 0.00 0.00 4.49
4114 4448 1.795286 GCCTATGAATAGCAGCACGTC 59.205 52.381 0.00 0.00 0.00 4.34
4116 4450 3.722147 CCTATGAATAGCAGCACGTCTT 58.278 45.455 0.00 0.00 0.00 3.01
4117 4451 3.738282 CCTATGAATAGCAGCACGTCTTC 59.262 47.826 0.00 0.00 0.00 2.87
4119 4453 2.881074 TGAATAGCAGCACGTCTTCTC 58.119 47.619 0.00 0.00 0.00 2.87
4120 4454 2.493675 TGAATAGCAGCACGTCTTCTCT 59.506 45.455 0.00 0.00 0.00 3.10
4121 4455 3.056536 TGAATAGCAGCACGTCTTCTCTT 60.057 43.478 0.00 0.00 0.00 2.85
4122 4456 3.601443 ATAGCAGCACGTCTTCTCTTT 57.399 42.857 0.00 0.00 0.00 2.52
4123 4457 1.506493 AGCAGCACGTCTTCTCTTTG 58.494 50.000 0.00 0.00 0.00 2.77
4124 4458 0.514691 GCAGCACGTCTTCTCTTTGG 59.485 55.000 0.00 0.00 0.00 3.28
4125 4459 1.871080 CAGCACGTCTTCTCTTTGGT 58.129 50.000 0.00 0.00 0.00 3.67
4126 4460 2.213499 CAGCACGTCTTCTCTTTGGTT 58.787 47.619 0.00 0.00 0.00 3.67
4127 4461 3.390135 CAGCACGTCTTCTCTTTGGTTA 58.610 45.455 0.00 0.00 0.00 2.85
4134 4468 4.448060 CGTCTTCTCTTTGGTTACTGGAAC 59.552 45.833 0.00 0.00 37.31 3.62
4155 4489 7.013274 TGGAACTCTTTCTCCTAAATTGTTGTG 59.987 37.037 0.00 0.00 32.51 3.33
4156 4490 6.884280 ACTCTTTCTCCTAAATTGTTGTGG 57.116 37.500 0.00 0.00 0.00 4.17
4159 4493 7.038154 TCTTTCTCCTAAATTGTTGTGGTTG 57.962 36.000 0.00 0.00 0.00 3.77
4197 4534 1.869767 CTGTTTGGTGTGAGTGAGCTC 59.130 52.381 6.82 6.82 41.97 4.09
4208 4545 4.627035 TGTGAGTGAGCTCGTTATTGATTG 59.373 41.667 9.64 0.00 44.48 2.67
4214 4551 7.041721 AGTGAGCTCGTTATTGATTGTCAATA 58.958 34.615 9.64 8.00 44.57 1.90
4306 4646 6.655425 GGCCTGAATCCTAATGTTATTACCTC 59.345 42.308 0.00 0.00 0.00 3.85
4367 4707 4.566488 GGTCTTTGTTGACAGGATGAGGAT 60.566 45.833 0.00 0.00 39.69 3.24
4376 4716 1.278413 CAGGATGAGGATGCCGATGAT 59.722 52.381 0.00 0.00 39.69 2.45
4408 4748 0.326264 GACAAGGCTGGGTCTGATGT 59.674 55.000 11.20 0.00 0.00 3.06
4409 4749 0.326264 ACAAGGCTGGGTCTGATGTC 59.674 55.000 0.00 0.00 0.00 3.06
4450 4790 2.779506 CGTAAGTTGCTCCCTTCCTTT 58.220 47.619 0.00 0.00 0.00 3.11
4451 4791 3.146847 CGTAAGTTGCTCCCTTCCTTTT 58.853 45.455 0.00 0.00 0.00 2.27
4452 4792 3.058224 CGTAAGTTGCTCCCTTCCTTTTG 60.058 47.826 0.00 0.00 0.00 2.44
4552 4897 3.172339 GGATGAGCTCTAGATGGATGGT 58.828 50.000 16.19 0.00 0.00 3.55
4803 5276 5.595542 TCCTTTGGTACTACGTACATGCTAT 59.404 40.000 6.51 0.00 40.41 2.97
4807 5280 4.276678 TGGTACTACGTACATGCTATGACC 59.723 45.833 6.51 0.00 40.41 4.02
4810 5283 3.628942 ACTACGTACATGCTATGACCGAA 59.371 43.478 0.00 0.00 33.53 4.30
4835 5308 4.265073 GTCAAGATGGTGCTTGGTCTAAT 58.735 43.478 0.00 0.00 44.14 1.73
4848 5321 1.156736 GTCTAATGCTGTGTTGCGGT 58.843 50.000 0.00 0.00 35.36 5.68
4851 5324 2.232696 TCTAATGCTGTGTTGCGGTCTA 59.767 45.455 0.00 0.00 35.36 2.59
4925 5412 4.142227 ACGACGATGATAAGTAGCAAACCT 60.142 41.667 0.00 0.00 0.00 3.50
4959 5446 2.439507 ACATTTCTCACTGGGACACACT 59.560 45.455 0.00 0.00 0.00 3.55
4981 5468 2.849880 GCTTCAGCGAAATATTGCCA 57.150 45.000 0.00 0.00 36.53 4.92
4982 5469 2.724349 GCTTCAGCGAAATATTGCCAG 58.276 47.619 0.00 0.00 36.53 4.85
4983 5470 2.542411 GCTTCAGCGAAATATTGCCAGG 60.542 50.000 0.00 0.00 36.53 4.45
4984 5471 1.679139 TCAGCGAAATATTGCCAGGG 58.321 50.000 0.00 0.00 36.53 4.45
4985 5472 0.670162 CAGCGAAATATTGCCAGGGG 59.330 55.000 0.00 0.00 36.53 4.79
5003 5490 2.674796 GGCAACCGAGTCTAGTCATT 57.325 50.000 0.00 0.00 0.00 2.57
5004 5491 2.271800 GGCAACCGAGTCTAGTCATTG 58.728 52.381 0.00 0.00 0.00 2.82
5005 5492 2.094182 GGCAACCGAGTCTAGTCATTGA 60.094 50.000 0.00 0.00 0.00 2.57
5006 5493 3.430929 GGCAACCGAGTCTAGTCATTGAT 60.431 47.826 0.00 0.00 0.00 2.57
5007 5494 4.202121 GGCAACCGAGTCTAGTCATTGATA 60.202 45.833 0.00 0.00 0.00 2.15
5008 5495 5.348986 GCAACCGAGTCTAGTCATTGATAA 58.651 41.667 0.00 0.00 0.00 1.75
5009 5496 5.810587 GCAACCGAGTCTAGTCATTGATAAA 59.189 40.000 0.00 0.00 0.00 1.40
5010 5497 6.480320 GCAACCGAGTCTAGTCATTGATAAAT 59.520 38.462 0.00 0.00 0.00 1.40
5011 5498 7.011482 GCAACCGAGTCTAGTCATTGATAAATT 59.989 37.037 0.00 0.00 0.00 1.82
5012 5499 9.529325 CAACCGAGTCTAGTCATTGATAAATTA 57.471 33.333 0.00 0.00 0.00 1.40
5013 5500 9.530633 AACCGAGTCTAGTCATTGATAAATTAC 57.469 33.333 0.00 0.00 0.00 1.89
5014 5501 8.692710 ACCGAGTCTAGTCATTGATAAATTACA 58.307 33.333 0.00 0.00 0.00 2.41
5015 5502 8.969267 CCGAGTCTAGTCATTGATAAATTACAC 58.031 37.037 0.00 0.00 0.00 2.90
5016 5503 8.969267 CGAGTCTAGTCATTGATAAATTACACC 58.031 37.037 0.00 0.00 0.00 4.16
5017 5504 8.873215 AGTCTAGTCATTGATAAATTACACCG 57.127 34.615 0.00 0.00 0.00 4.94
5018 5505 8.475639 AGTCTAGTCATTGATAAATTACACCGT 58.524 33.333 0.00 0.00 0.00 4.83
5019 5506 8.540492 GTCTAGTCATTGATAAATTACACCGTG 58.460 37.037 0.00 0.00 0.00 4.94
5020 5507 8.255206 TCTAGTCATTGATAAATTACACCGTGT 58.745 33.333 9.58 9.58 0.00 4.49
5021 5508 7.303634 AGTCATTGATAAATTACACCGTGTC 57.696 36.000 7.63 0.00 0.00 3.67
5022 5509 7.103641 AGTCATTGATAAATTACACCGTGTCT 58.896 34.615 7.63 0.00 0.00 3.41
5023 5510 7.606456 AGTCATTGATAAATTACACCGTGTCTT 59.394 33.333 7.63 3.38 0.00 3.01
5024 5511 7.692291 GTCATTGATAAATTACACCGTGTCTTG 59.308 37.037 7.63 0.00 0.00 3.02
5025 5512 5.539582 TGATAAATTACACCGTGTCTTGC 57.460 39.130 7.63 0.00 0.00 4.01
5026 5513 4.998033 TGATAAATTACACCGTGTCTTGCA 59.002 37.500 7.63 1.98 0.00 4.08
5027 5514 5.470437 TGATAAATTACACCGTGTCTTGCAA 59.530 36.000 7.63 0.00 0.00 4.08
5028 5515 3.896648 AATTACACCGTGTCTTGCAAG 57.103 42.857 20.81 20.81 0.00 4.01
5029 5516 2.605837 TTACACCGTGTCTTGCAAGA 57.394 45.000 25.16 25.16 0.00 3.02
5030 5517 2.831685 TACACCGTGTCTTGCAAGAT 57.168 45.000 30.65 16.00 37.39 2.40
5031 5518 1.967319 ACACCGTGTCTTGCAAGATT 58.033 45.000 30.65 11.29 37.39 2.40
5032 5519 2.297701 ACACCGTGTCTTGCAAGATTT 58.702 42.857 30.65 11.62 37.39 2.17
5033 5520 3.472652 ACACCGTGTCTTGCAAGATTTA 58.527 40.909 30.65 17.70 37.39 1.40
5034 5521 4.072131 ACACCGTGTCTTGCAAGATTTAT 58.928 39.130 30.65 13.73 37.39 1.40
5035 5522 5.242434 ACACCGTGTCTTGCAAGATTTATA 58.758 37.500 30.65 13.05 37.39 0.98
5036 5523 5.880332 ACACCGTGTCTTGCAAGATTTATAT 59.120 36.000 30.65 13.24 37.39 0.86
5037 5524 6.037172 ACACCGTGTCTTGCAAGATTTATATC 59.963 38.462 30.65 16.75 37.39 1.63
5038 5525 6.258727 CACCGTGTCTTGCAAGATTTATATCT 59.741 38.462 30.65 7.55 43.01 1.98
5039 5526 6.480320 ACCGTGTCTTGCAAGATTTATATCTC 59.520 38.462 30.65 15.37 40.26 2.75
5040 5527 6.703607 CCGTGTCTTGCAAGATTTATATCTCT 59.296 38.462 30.65 0.00 40.26 3.10
5041 5528 7.867909 CCGTGTCTTGCAAGATTTATATCTCTA 59.132 37.037 30.65 1.85 40.26 2.43
5042 5529 9.249457 CGTGTCTTGCAAGATTTATATCTCTAA 57.751 33.333 30.65 1.39 40.26 2.10
5049 5536 9.658799 TGCAAGATTTATATCTCTAATAGTGGC 57.341 33.333 0.00 0.00 40.26 5.01
5050 5537 8.812329 GCAAGATTTATATCTCTAATAGTGGCG 58.188 37.037 0.00 0.00 40.26 5.69
5080 5567 1.003118 AGCAACCGAGCCAAGTCATTA 59.997 47.619 0.00 0.00 34.23 1.90
5087 5574 6.377327 ACCGAGCCAAGTCATTAATAAATG 57.623 37.500 0.00 0.00 43.32 2.32
5101 5588 7.753132 TCATTAATAAATGACACCGTTTCTTGC 59.247 33.333 0.00 0.00 45.17 4.01
5102 5589 5.446143 AATAAATGACACCGTTTCTTGCA 57.554 34.783 0.00 0.00 33.80 4.08
5103 5590 3.791973 AAATGACACCGTTTCTTGCAA 57.208 38.095 0.00 0.00 0.00 4.08
5104 5591 3.354089 AATGACACCGTTTCTTGCAAG 57.646 42.857 20.81 20.81 0.00 4.01
5105 5592 2.031258 TGACACCGTTTCTTGCAAGA 57.969 45.000 25.16 25.16 0.00 3.02
5106 5593 2.571212 TGACACCGTTTCTTGCAAGAT 58.429 42.857 28.89 12.93 34.49 2.40
5107 5594 2.948979 TGACACCGTTTCTTGCAAGATT 59.051 40.909 28.89 9.24 34.49 2.40
5110 5597 5.240623 TGACACCGTTTCTTGCAAGATTTAT 59.759 36.000 28.89 11.74 34.49 1.40
5113 5600 7.472543 ACACCGTTTCTTGCAAGATTTATATC 58.527 34.615 28.89 12.08 34.49 1.63
5114 5601 7.336931 ACACCGTTTCTTGCAAGATTTATATCT 59.663 33.333 28.89 6.82 43.01 1.98
5116 5603 7.770897 ACCGTTTCTTGCAAGATTTATATCTCT 59.229 33.333 28.89 2.83 40.26 3.10
5244 5833 6.036470 GGAGCAAATGTAAGTTAATGGAAGC 58.964 40.000 0.00 0.00 0.00 3.86
5249 5838 6.840780 AATGTAAGTTAATGGAAGCTTGCT 57.159 33.333 19.34 2.06 0.00 3.91
5267 5856 4.054780 TGCTACGAAGTCAAGAACACTT 57.945 40.909 0.00 0.00 43.93 3.16
5268 5857 3.802139 TGCTACGAAGTCAAGAACACTTG 59.198 43.478 0.00 0.00 43.93 3.16
5272 5861 2.221981 CGAAGTCAAGAACACTTGAGCC 59.778 50.000 12.02 3.45 46.70 4.70
5273 5862 3.206150 GAAGTCAAGAACACTTGAGCCA 58.794 45.455 12.02 0.00 46.70 4.75
5274 5863 3.498774 AGTCAAGAACACTTGAGCCAT 57.501 42.857 12.02 0.00 46.70 4.40
5276 5865 4.573900 AGTCAAGAACACTTGAGCCATAG 58.426 43.478 12.02 0.00 46.70 2.23
5277 5866 3.686726 GTCAAGAACACTTGAGCCATAGG 59.313 47.826 12.02 0.00 46.70 2.57
5278 5867 3.012518 CAAGAACACTTGAGCCATAGGG 58.987 50.000 4.23 0.00 42.26 3.53
5279 5868 2.551270 AGAACACTTGAGCCATAGGGA 58.449 47.619 0.00 0.00 35.59 4.20
5280 5869 3.118531 AGAACACTTGAGCCATAGGGAT 58.881 45.455 0.00 0.00 35.59 3.85
5288 5877 3.971245 GAGCCATAGGGATCGATTTCT 57.029 47.619 0.00 2.98 40.28 2.52
5290 5879 5.004922 GAGCCATAGGGATCGATTTCTAG 57.995 47.826 0.00 0.00 40.28 2.43
5291 5880 4.421131 AGCCATAGGGATCGATTTCTAGT 58.579 43.478 0.00 0.00 35.59 2.57
5292 5881 4.464597 AGCCATAGGGATCGATTTCTAGTC 59.535 45.833 0.00 0.00 35.59 2.59
5293 5882 4.675671 GCCATAGGGATCGATTTCTAGTCG 60.676 50.000 0.00 0.00 37.05 4.18
5294 5883 4.416620 CATAGGGATCGATTTCTAGTCGC 58.583 47.826 0.00 0.00 38.88 5.19
5295 5884 1.267261 AGGGATCGATTTCTAGTCGCG 59.733 52.381 0.00 0.00 38.88 5.87
5296 5885 1.001597 GGGATCGATTTCTAGTCGCGT 60.002 52.381 5.77 0.00 38.88 6.01
5297 5886 2.225019 GGGATCGATTTCTAGTCGCGTA 59.775 50.000 5.77 0.00 38.88 4.42
5298 5887 3.480894 GGATCGATTTCTAGTCGCGTAG 58.519 50.000 5.77 0.95 38.88 3.51
5320 5909 8.261908 CGTAGCTTCATAATAATTTTGCAAAGC 58.738 33.333 12.41 7.56 37.46 3.51
5321 5910 9.305925 GTAGCTTCATAATAATTTTGCAAAGCT 57.694 29.630 12.41 14.36 46.15 3.74
5322 5911 8.782339 AGCTTCATAATAATTTTGCAAAGCTT 57.218 26.923 12.41 12.22 43.02 3.74
5323 5912 8.876790 AGCTTCATAATAATTTTGCAAAGCTTC 58.123 29.630 12.41 0.00 43.02 3.86
5324 5913 8.118607 GCTTCATAATAATTTTGCAAAGCTTCC 58.881 33.333 12.41 0.00 35.06 3.46
5325 5914 7.754069 TCATAATAATTTTGCAAAGCTTCCG 57.246 32.000 12.41 0.00 0.00 4.30
5326 5915 4.926860 AATAATTTTGCAAAGCTTCCGC 57.073 36.364 12.41 12.66 0.00 5.54
5327 5916 2.237393 AATTTTGCAAAGCTTCCGCA 57.763 40.000 17.08 17.08 39.10 5.69
5328 5917 2.460757 ATTTTGCAAAGCTTCCGCAT 57.539 40.000 20.48 6.90 39.10 4.73
5329 5918 3.591196 ATTTTGCAAAGCTTCCGCATA 57.409 38.095 20.48 14.65 39.10 3.14
5330 5919 3.377346 TTTTGCAAAGCTTCCGCATAA 57.623 38.095 20.48 18.63 39.10 1.90
5331 5920 3.591196 TTTGCAAAGCTTCCGCATAAT 57.409 38.095 20.48 0.00 39.10 1.28
5332 5921 3.591196 TTGCAAAGCTTCCGCATAATT 57.409 38.095 20.48 0.00 39.10 1.40
5333 5922 3.591196 TGCAAAGCTTCCGCATAATTT 57.409 38.095 17.08 0.00 39.10 1.82
5334 5923 3.510719 TGCAAAGCTTCCGCATAATTTC 58.489 40.909 17.08 0.00 39.10 2.17
5335 5924 2.860136 GCAAAGCTTCCGCATAATTTCC 59.140 45.455 14.24 0.00 39.10 3.13
5336 5925 3.429410 GCAAAGCTTCCGCATAATTTCCT 60.429 43.478 14.24 0.00 39.10 3.36
5337 5926 4.747810 CAAAGCTTCCGCATAATTTCCTT 58.252 39.130 0.00 0.00 39.10 3.36
5338 5927 5.170748 CAAAGCTTCCGCATAATTTCCTTT 58.829 37.500 0.00 0.00 39.10 3.11
5339 5928 4.376340 AGCTTCCGCATAATTTCCTTTG 57.624 40.909 0.00 0.00 39.10 2.77
5340 5929 3.131046 AGCTTCCGCATAATTTCCTTTGG 59.869 43.478 0.00 0.00 39.10 3.28
5341 5930 3.130340 GCTTCCGCATAATTTCCTTTGGA 59.870 43.478 0.00 0.00 35.78 3.53
5342 5931 4.202151 GCTTCCGCATAATTTCCTTTGGAT 60.202 41.667 0.00 0.00 35.78 3.41
5343 5932 5.682212 GCTTCCGCATAATTTCCTTTGGATT 60.682 40.000 0.00 0.00 35.78 3.01
5344 5933 5.261209 TCCGCATAATTTCCTTTGGATTG 57.739 39.130 0.00 0.00 0.00 2.67
5345 5934 4.952957 TCCGCATAATTTCCTTTGGATTGA 59.047 37.500 0.00 0.00 0.00 2.57
5346 5935 5.598005 TCCGCATAATTTCCTTTGGATTGAT 59.402 36.000 0.00 0.00 0.00 2.57
5347 5936 6.775142 TCCGCATAATTTCCTTTGGATTGATA 59.225 34.615 0.00 0.00 0.00 2.15
5348 5937 7.451255 TCCGCATAATTTCCTTTGGATTGATAT 59.549 33.333 0.00 0.00 0.00 1.63
5502 6333 9.683069 AGAAATGTCAGAATATTTGTTGAACAC 57.317 29.630 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 53 3.421844 GAATTAGGCTGACCAACCACTT 58.578 45.455 0.00 0.00 39.06 3.16
85 89 6.260936 TGTTTAGTTTCTTCTTCAAGAGGCAG 59.739 38.462 0.00 0.00 39.90 4.85
89 93 9.875675 CTTCATGTTTAGTTTCTTCTTCAAGAG 57.124 33.333 0.00 0.00 39.90 2.85
98 102 9.971922 CTTTCATTCCTTCATGTTTAGTTTCTT 57.028 29.630 0.00 0.00 0.00 2.52
105 109 9.130661 TGTTTCTCTTTCATTCCTTCATGTTTA 57.869 29.630 0.00 0.00 0.00 2.01
106 110 8.010733 TGTTTCTCTTTCATTCCTTCATGTTT 57.989 30.769 0.00 0.00 0.00 2.83
113 117 4.764308 GCCTCTGTTTCTCTTTCATTCCTT 59.236 41.667 0.00 0.00 0.00 3.36
116 120 5.471456 TCTTGCCTCTGTTTCTCTTTCATTC 59.529 40.000 0.00 0.00 0.00 2.67
120 124 4.215185 CCTTCTTGCCTCTGTTTCTCTTTC 59.785 45.833 0.00 0.00 0.00 2.62
127 131 1.479389 CCACCCTTCTTGCCTCTGTTT 60.479 52.381 0.00 0.00 0.00 2.83
134 138 2.991540 GGTGCCACCCTTCTTGCC 60.992 66.667 1.17 0.00 30.04 4.52
149 153 7.490840 TGAATTATGAATGCATTTTCGATGGT 58.509 30.769 14.33 0.00 35.94 3.55
158 162 7.276658 TGAATGCCTTGAATTATGAATGCATT 58.723 30.769 12.83 12.83 42.47 3.56
159 163 6.822442 TGAATGCCTTGAATTATGAATGCAT 58.178 32.000 0.00 0.00 35.66 3.96
160 164 6.223351 TGAATGCCTTGAATTATGAATGCA 57.777 33.333 0.00 0.00 0.00 3.96
161 165 8.821147 TTATGAATGCCTTGAATTATGAATGC 57.179 30.769 0.00 0.00 0.00 3.56
169 173 9.321562 GACAATGAATTATGAATGCCTTGAATT 57.678 29.630 3.13 0.00 0.00 2.17
170 174 7.650504 CGACAATGAATTATGAATGCCTTGAAT 59.349 33.333 3.13 0.00 0.00 2.57
171 175 6.974048 CGACAATGAATTATGAATGCCTTGAA 59.026 34.615 3.13 0.00 0.00 2.69
172 176 6.095300 ACGACAATGAATTATGAATGCCTTGA 59.905 34.615 0.00 0.00 0.00 3.02
173 177 6.267817 ACGACAATGAATTATGAATGCCTTG 58.732 36.000 0.00 0.00 0.00 3.61
174 178 6.455360 ACGACAATGAATTATGAATGCCTT 57.545 33.333 0.00 0.00 0.00 4.35
208 212 4.443598 GGGCTCCCACAACAACAATAAAAA 60.444 41.667 0.00 0.00 35.81 1.94
209 213 3.070302 GGGCTCCCACAACAACAATAAAA 59.930 43.478 0.00 0.00 35.81 1.52
213 217 0.188342 AGGGCTCCCACAACAACAAT 59.812 50.000 7.82 0.00 38.92 2.71
216 220 0.755327 ACAAGGGCTCCCACAACAAC 60.755 55.000 7.82 0.00 38.92 3.32
228 232 0.321653 ATGGAACGACTGACAAGGGC 60.322 55.000 0.00 0.00 0.00 5.19
229 233 2.185004 AATGGAACGACTGACAAGGG 57.815 50.000 0.00 0.00 0.00 3.95
230 234 3.563808 TGAAAATGGAACGACTGACAAGG 59.436 43.478 0.00 0.00 0.00 3.61
233 241 3.804036 AGTGAAAATGGAACGACTGACA 58.196 40.909 0.00 0.00 0.00 3.58
239 247 4.158949 TCCTCGATAGTGAAAATGGAACGA 59.841 41.667 0.00 0.00 37.40 3.85
251 259 3.470709 ACAATTGCCATCCTCGATAGTG 58.529 45.455 5.05 0.00 37.40 2.74
262 277 2.233431 ACCAACGCATAACAATTGCCAT 59.767 40.909 5.05 0.00 36.75 4.40
277 292 3.202001 CATGCGGCCCTACCAACG 61.202 66.667 0.00 0.00 39.03 4.10
300 315 2.755103 CCCTTGAAATCAGCCCAAGTAC 59.245 50.000 0.00 0.00 36.47 2.73
303 318 1.188863 CCCCTTGAAATCAGCCCAAG 58.811 55.000 0.00 0.00 37.58 3.61
330 345 1.002134 CACACACTGTCCATCCCCC 60.002 63.158 0.00 0.00 0.00 5.40
331 346 0.606401 CACACACACTGTCCATCCCC 60.606 60.000 0.00 0.00 0.00 4.81
332 347 1.237285 GCACACACACTGTCCATCCC 61.237 60.000 0.00 0.00 0.00 3.85
333 348 1.568612 CGCACACACACTGTCCATCC 61.569 60.000 0.00 0.00 0.00 3.51
334 349 1.568612 CCGCACACACACTGTCCATC 61.569 60.000 0.00 0.00 0.00 3.51
335 350 1.597854 CCGCACACACACTGTCCAT 60.598 57.895 0.00 0.00 0.00 3.41
336 351 2.203001 CCGCACACACACTGTCCA 60.203 61.111 0.00 0.00 0.00 4.02
337 352 2.972505 CCCGCACACACACTGTCC 60.973 66.667 0.00 0.00 0.00 4.02
338 353 3.649986 GCCCGCACACACACTGTC 61.650 66.667 0.00 0.00 0.00 3.51
352 367 2.552231 ATACAAACAGCTCCCCGCCC 62.552 60.000 0.00 0.00 40.39 6.13
353 368 1.077716 ATACAAACAGCTCCCCGCC 60.078 57.895 0.00 0.00 40.39 6.13
354 369 1.429148 CGATACAAACAGCTCCCCGC 61.429 60.000 0.00 0.00 39.57 6.13
355 370 0.810031 CCGATACAAACAGCTCCCCG 60.810 60.000 0.00 0.00 0.00 5.73
356 371 0.252197 ACCGATACAAACAGCTCCCC 59.748 55.000 0.00 0.00 0.00 4.81
357 372 2.109425 AACCGATACAAACAGCTCCC 57.891 50.000 0.00 0.00 0.00 4.30
358 373 4.499037 AAAAACCGATACAAACAGCTCC 57.501 40.909 0.00 0.00 0.00 4.70
376 391 8.932791 TGCCAACTAATTTACGAAAAACAAAAA 58.067 25.926 0.00 0.00 0.00 1.94
377 392 8.475331 TGCCAACTAATTTACGAAAAACAAAA 57.525 26.923 0.00 0.00 0.00 2.44
378 393 8.381387 GTTGCCAACTAATTTACGAAAAACAAA 58.619 29.630 0.00 0.00 0.00 2.83
379 394 7.010275 GGTTGCCAACTAATTTACGAAAAACAA 59.990 33.333 7.62 0.00 0.00 2.83
380 395 6.476053 GGTTGCCAACTAATTTACGAAAAACA 59.524 34.615 7.62 0.00 0.00 2.83
381 396 6.476053 TGGTTGCCAACTAATTTACGAAAAAC 59.524 34.615 7.62 0.00 0.00 2.43
382 397 6.570692 TGGTTGCCAACTAATTTACGAAAAA 58.429 32.000 7.62 0.00 0.00 1.94
383 398 6.145338 TGGTTGCCAACTAATTTACGAAAA 57.855 33.333 7.62 0.00 0.00 2.29
384 399 5.769484 TGGTTGCCAACTAATTTACGAAA 57.231 34.783 7.62 0.00 0.00 3.46
385 400 5.708230 AGATGGTTGCCAACTAATTTACGAA 59.292 36.000 7.62 0.00 34.86 3.85
386 401 5.250200 AGATGGTTGCCAACTAATTTACGA 58.750 37.500 7.62 0.00 34.86 3.43
387 402 5.560966 AGATGGTTGCCAACTAATTTACG 57.439 39.130 7.62 0.00 34.86 3.18
388 403 7.158099 AGAAGATGGTTGCCAACTAATTTAC 57.842 36.000 7.62 0.00 35.58 2.01
389 404 7.669722 AGAAGAAGATGGTTGCCAACTAATTTA 59.330 33.333 7.62 0.00 35.58 1.40
390 405 6.494835 AGAAGAAGATGGTTGCCAACTAATTT 59.505 34.615 7.62 0.52 35.58 1.82
391 406 6.012745 AGAAGAAGATGGTTGCCAACTAATT 58.987 36.000 7.62 1.15 35.58 1.40
392 407 5.574188 AGAAGAAGATGGTTGCCAACTAAT 58.426 37.500 7.62 1.88 35.58 1.73
393 408 4.985538 AGAAGAAGATGGTTGCCAACTAA 58.014 39.130 7.62 0.00 35.58 2.24
394 409 4.640771 AGAAGAAGATGGTTGCCAACTA 57.359 40.909 7.62 0.96 35.58 2.24
395 410 3.515602 AGAAGAAGATGGTTGCCAACT 57.484 42.857 7.62 0.00 38.29 3.16
396 411 5.705609 TTAAGAAGAAGATGGTTGCCAAC 57.294 39.130 0.00 0.00 36.95 3.77
397 412 6.916360 ATTTAAGAAGAAGATGGTTGCCAA 57.084 33.333 0.00 0.00 36.95 4.52
398 413 8.593945 ATTATTTAAGAAGAAGATGGTTGCCA 57.406 30.769 0.00 0.00 38.19 4.92
399 414 7.857885 CGATTATTTAAGAAGAAGATGGTTGCC 59.142 37.037 0.00 0.00 0.00 4.52
400 415 7.857885 CCGATTATTTAAGAAGAAGATGGTTGC 59.142 37.037 0.00 0.00 0.00 4.17
401 416 8.893727 ACCGATTATTTAAGAAGAAGATGGTTG 58.106 33.333 0.00 0.00 0.00 3.77
402 417 9.462606 AACCGATTATTTAAGAAGAAGATGGTT 57.537 29.630 0.00 0.00 30.47 3.67
450 649 8.141268 ACAATGGTAAAATACAGAGTTTGTTGG 58.859 33.333 0.00 0.00 41.29 3.77
477 676 0.327591 GATCTGGGATGGATGGCCTC 59.672 60.000 3.32 0.00 34.31 4.70
480 679 0.769873 ACTGATCTGGGATGGATGGC 59.230 55.000 4.49 0.00 0.00 4.40
530 733 4.596585 GGTGTGGTGTGGGGTGGG 62.597 72.222 0.00 0.00 0.00 4.61
580 796 1.696644 GAATATGCGACGCGATCCG 59.303 57.895 15.93 14.53 44.21 4.18
588 804 1.457303 GGTCAGATGCGAATATGCGAC 59.543 52.381 7.46 0.00 37.81 5.19
886 1113 1.846973 GCTGCTTAATAGGGGCCCT 59.153 57.895 31.38 31.38 37.71 5.19
1107 1344 1.727215 ATAGGATCGGACGGGGAGGT 61.727 60.000 0.00 0.00 0.00 3.85
1109 1346 0.038455 AGATAGGATCGGACGGGGAG 59.962 60.000 0.00 0.00 0.00 4.30
1110 1347 0.037877 GAGATAGGATCGGACGGGGA 59.962 60.000 0.00 0.00 0.00 4.81
1111 1348 1.306642 CGAGATAGGATCGGACGGGG 61.307 65.000 0.00 0.00 36.54 5.73
1114 1351 1.798283 ACTCGAGATAGGATCGGACG 58.202 55.000 21.68 0.00 40.54 4.79
1115 1352 3.680937 CACTACTCGAGATAGGATCGGAC 59.319 52.174 21.68 0.00 40.54 4.79
1116 1353 3.865302 GCACTACTCGAGATAGGATCGGA 60.865 52.174 21.68 0.00 40.54 4.55
1124 1378 5.051153 CACTAGACAGCACTACTCGAGATA 58.949 45.833 21.68 6.98 0.00 1.98
1134 1388 3.497332 TCAACTACCACTAGACAGCACT 58.503 45.455 0.00 0.00 0.00 4.40
1135 1389 3.839293 CTCAACTACCACTAGACAGCAC 58.161 50.000 0.00 0.00 0.00 4.40
1138 1392 3.674682 GCAGCTCAACTACCACTAGACAG 60.675 52.174 0.00 0.00 0.00 3.51
1139 1393 2.231478 GCAGCTCAACTACCACTAGACA 59.769 50.000 0.00 0.00 0.00 3.41
1140 1394 2.494073 AGCAGCTCAACTACCACTAGAC 59.506 50.000 0.00 0.00 0.00 2.59
1141 1395 2.493675 CAGCAGCTCAACTACCACTAGA 59.506 50.000 0.00 0.00 0.00 2.43
1142 1396 2.417924 CCAGCAGCTCAACTACCACTAG 60.418 54.545 0.00 0.00 0.00 2.57
1168 1432 0.902531 ATCACGGATCGGAACCAACT 59.097 50.000 7.35 0.00 0.00 3.16
1170 1434 1.134818 CAGATCACGGATCGGAACCAA 60.135 52.381 7.35 0.00 43.17 3.67
1172 1436 0.460311 ACAGATCACGGATCGGAACC 59.540 55.000 16.49 0.00 43.17 3.62
1222 1487 1.621317 GCTCTAGATCCCTAACAGCCC 59.379 57.143 0.00 0.00 30.24 5.19
1282 1555 2.351738 CGACCAGCCAAAAATGGAGAAC 60.352 50.000 0.00 0.00 39.02 3.01
1302 1575 1.028130 TCCTCTAGATCACAGCAGCG 58.972 55.000 0.00 0.00 0.00 5.18
1316 1589 2.665165 AGCGTCAGATTCAGATCCTCT 58.335 47.619 0.00 0.00 32.44 3.69
1344 1617 2.606725 CGTCATGGAAGAAGACATCAGC 59.393 50.000 0.00 0.00 32.68 4.26
1347 1620 6.313905 ACATTAACGTCATGGAAGAAGACATC 59.686 38.462 11.33 0.00 32.68 3.06
1350 1623 5.163854 CCACATTAACGTCATGGAAGAAGAC 60.164 44.000 11.33 0.00 31.69 3.01
1359 1632 1.729517 TGTCGCCACATTAACGTCATG 59.270 47.619 6.21 6.21 0.00 3.07
1380 1653 2.101415 TCAACCAGGCTACGAGATCATG 59.899 50.000 0.00 0.00 0.00 3.07
1381 1654 2.388735 TCAACCAGGCTACGAGATCAT 58.611 47.619 0.00 0.00 0.00 2.45
1389 1664 1.027357 CCATGCATCAACCAGGCTAC 58.973 55.000 0.00 0.00 0.00 3.58
1395 1670 0.608856 ACGAAGCCATGCATCAACCA 60.609 50.000 0.00 0.00 0.00 3.67
1396 1671 0.179156 CACGAAGCCATGCATCAACC 60.179 55.000 0.00 0.00 0.00 3.77
1397 1672 0.179156 CCACGAAGCCATGCATCAAC 60.179 55.000 0.00 0.00 0.00 3.18
1398 1673 1.314534 CCCACGAAGCCATGCATCAA 61.315 55.000 0.00 0.00 0.00 2.57
1407 1696 2.079158 GGTACTAAAACCCACGAAGCC 58.921 52.381 0.00 0.00 33.02 4.35
1408 1697 1.728425 CGGTACTAAAACCCACGAAGC 59.272 52.381 0.00 0.00 36.03 3.86
1410 1699 1.607767 GCCGGTACTAAAACCCACGAA 60.608 52.381 1.90 0.00 36.03 3.85
1411 1700 0.037419 GCCGGTACTAAAACCCACGA 60.037 55.000 1.90 0.00 36.03 4.35
1412 1701 1.353609 CGCCGGTACTAAAACCCACG 61.354 60.000 1.90 0.00 36.03 4.94
1436 1725 4.801164 AGCCATGAATCTAGATTGGCTTT 58.199 39.130 31.12 18.23 41.89 3.51
1439 1728 2.740981 CGAGCCATGAATCTAGATTGGC 59.259 50.000 28.53 28.53 37.54 4.52
1449 1738 2.932614 CGAAGAAGAACGAGCCATGAAT 59.067 45.455 0.00 0.00 0.00 2.57
1454 1743 0.944311 GCACGAAGAAGAACGAGCCA 60.944 55.000 0.00 0.00 39.36 4.75
1457 1746 1.341606 GGAGCACGAAGAAGAACGAG 58.658 55.000 0.00 0.00 0.00 4.18
1459 1748 0.319555 TGGGAGCACGAAGAAGAACG 60.320 55.000 0.00 0.00 0.00 3.95
1460 1749 2.003301 GATGGGAGCACGAAGAAGAAC 58.997 52.381 0.00 0.00 0.00 3.01
1461 1750 1.902508 AGATGGGAGCACGAAGAAGAA 59.097 47.619 0.00 0.00 0.00 2.52
1462 1751 1.205655 CAGATGGGAGCACGAAGAAGA 59.794 52.381 0.00 0.00 0.00 2.87
1463 1752 1.066573 ACAGATGGGAGCACGAAGAAG 60.067 52.381 0.00 0.00 0.00 2.85
1465 1754 0.247460 CACAGATGGGAGCACGAAGA 59.753 55.000 0.00 0.00 0.00 2.87
1466 1755 0.247460 TCACAGATGGGAGCACGAAG 59.753 55.000 0.00 0.00 0.00 3.79
1473 1762 2.301296 ACACAGAGTTCACAGATGGGAG 59.699 50.000 0.00 0.00 0.00 4.30
1477 1766 1.802960 GGCACACAGAGTTCACAGATG 59.197 52.381 0.00 0.00 0.00 2.90
1478 1767 1.271054 GGGCACACAGAGTTCACAGAT 60.271 52.381 0.00 0.00 0.00 2.90
1479 1768 0.106708 GGGCACACAGAGTTCACAGA 59.893 55.000 0.00 0.00 0.00 3.41
1480 1769 0.107456 AGGGCACACAGAGTTCACAG 59.893 55.000 0.00 0.00 0.00 3.66
1481 1770 1.344438 CTAGGGCACACAGAGTTCACA 59.656 52.381 0.00 0.00 0.00 3.58
1482 1771 1.344763 ACTAGGGCACACAGAGTTCAC 59.655 52.381 0.00 0.00 0.00 3.18
1483 1772 1.344438 CACTAGGGCACACAGAGTTCA 59.656 52.381 0.00 0.00 0.00 3.18
1484 1773 1.344763 ACACTAGGGCACACAGAGTTC 59.655 52.381 0.00 0.00 0.00 3.01
1486 1775 1.424638 AACACTAGGGCACACAGAGT 58.575 50.000 0.00 0.00 0.00 3.24
1487 1776 2.299013 TGTAACACTAGGGCACACAGAG 59.701 50.000 0.00 0.00 0.00 3.35
1488 1777 2.321719 TGTAACACTAGGGCACACAGA 58.678 47.619 0.00 0.00 0.00 3.41
1489 1778 2.831685 TGTAACACTAGGGCACACAG 57.168 50.000 0.00 0.00 0.00 3.66
1490 1779 2.874052 GCATGTAACACTAGGGCACACA 60.874 50.000 2.30 0.00 0.00 3.72
1492 1781 1.674519 CGCATGTAACACTAGGGCACA 60.675 52.381 2.72 2.72 0.00 4.57
1493 1782 1.006832 CGCATGTAACACTAGGGCAC 58.993 55.000 0.00 0.00 0.00 5.01
1494 1783 0.742990 GCGCATGTAACACTAGGGCA 60.743 55.000 0.30 0.00 37.96 5.36
1495 1784 0.742990 TGCGCATGTAACACTAGGGC 60.743 55.000 5.66 0.00 38.45 5.19
1496 1785 1.953559 ATGCGCATGTAACACTAGGG 58.046 50.000 24.69 0.00 0.00 3.53
1497 1786 4.570772 ACTAAATGCGCATGTAACACTAGG 59.429 41.667 26.09 11.19 0.00 3.02
1501 1790 4.078363 ACACTAAATGCGCATGTAACAC 57.922 40.909 26.09 0.00 0.00 3.32
1502 1791 4.214332 TCAACACTAAATGCGCATGTAACA 59.786 37.500 26.09 1.90 0.00 2.41
1503 1792 4.717991 TCAACACTAAATGCGCATGTAAC 58.282 39.130 26.09 0.00 0.00 2.50
1504 1793 5.123027 TGATCAACACTAAATGCGCATGTAA 59.877 36.000 26.09 11.44 0.00 2.41
1505 1794 4.633565 TGATCAACACTAAATGCGCATGTA 59.366 37.500 26.09 22.20 0.00 2.29
1506 1795 3.439825 TGATCAACACTAAATGCGCATGT 59.560 39.130 26.09 22.29 0.00 3.21
1507 1796 4.018649 TGATCAACACTAAATGCGCATG 57.981 40.909 26.09 15.46 0.00 4.06
1508 1797 4.414852 GTTGATCAACACTAAATGCGCAT 58.585 39.130 29.43 19.28 40.84 4.73
1509 1798 3.666638 CGTTGATCAACACTAAATGCGCA 60.667 43.478 32.06 14.96 41.20 6.09
1510 1799 2.840176 CGTTGATCAACACTAAATGCGC 59.160 45.455 32.06 0.00 41.20 6.09
1511 1800 2.840176 GCGTTGATCAACACTAAATGCG 59.160 45.455 32.06 18.79 41.20 4.73
1512 1801 4.083581 AGCGTTGATCAACACTAAATGC 57.916 40.909 32.06 25.02 41.20 3.56
1513 1802 7.218773 CCATAAAGCGTTGATCAACACTAAATG 59.781 37.037 32.06 28.44 41.20 2.32
1514 1803 7.250569 CCATAAAGCGTTGATCAACACTAAAT 58.749 34.615 32.06 22.00 41.20 1.40
1515 1804 6.607689 CCATAAAGCGTTGATCAACACTAAA 58.392 36.000 32.06 20.99 41.20 1.85
1516 1805 5.391523 GCCATAAAGCGTTGATCAACACTAA 60.392 40.000 32.06 21.29 41.20 2.24
1517 1806 4.094294 GCCATAAAGCGTTGATCAACACTA 59.906 41.667 32.06 17.70 41.20 2.74
1518 1807 3.119849 GCCATAAAGCGTTGATCAACACT 60.120 43.478 32.06 26.66 41.20 3.55
1519 1808 3.171277 GCCATAAAGCGTTGATCAACAC 58.829 45.455 32.06 25.01 41.20 3.32
1520 1809 2.816672 TGCCATAAAGCGTTGATCAACA 59.183 40.909 32.06 16.78 41.20 3.33
1521 1810 3.485947 TGCCATAAAGCGTTGATCAAC 57.514 42.857 25.68 25.68 37.92 3.18
1522 1811 4.157472 TGATTGCCATAAAGCGTTGATCAA 59.843 37.500 3.38 3.38 34.65 2.57
1523 1812 3.693578 TGATTGCCATAAAGCGTTGATCA 59.306 39.130 0.00 0.00 34.65 2.92
1524 1813 4.037690 GTGATTGCCATAAAGCGTTGATC 58.962 43.478 0.00 0.00 34.65 2.92
1525 1814 3.487376 CGTGATTGCCATAAAGCGTTGAT 60.487 43.478 0.00 0.00 34.65 2.57
1526 1815 2.159585 CGTGATTGCCATAAAGCGTTGA 60.160 45.455 0.00 0.00 34.65 3.18
1527 1816 2.176369 CGTGATTGCCATAAAGCGTTG 58.824 47.619 0.00 0.00 34.65 4.10
1528 1817 1.810151 ACGTGATTGCCATAAAGCGTT 59.190 42.857 0.00 0.00 34.65 4.84
1529 1818 1.396996 GACGTGATTGCCATAAAGCGT 59.603 47.619 0.00 0.00 34.65 5.07
1530 1819 1.592110 CGACGTGATTGCCATAAAGCG 60.592 52.381 0.00 0.00 34.65 4.68
1531 1820 1.396996 ACGACGTGATTGCCATAAAGC 59.603 47.619 0.00 0.00 0.00 3.51
1532 1821 3.740044 AACGACGTGATTGCCATAAAG 57.260 42.857 0.00 0.00 0.00 1.85
1547 1836 2.601763 ACAACACTCGAACTGAAACGAC 59.398 45.455 0.00 0.00 34.82 4.34
1550 1839 3.924610 GTGACAACACTCGAACTGAAAC 58.075 45.455 0.00 0.00 42.99 2.78
1571 1860 4.457257 TGATCTATCATGACAGGTAGCGAG 59.543 45.833 0.14 0.00 0.00 5.03
1572 1861 4.398319 TGATCTATCATGACAGGTAGCGA 58.602 43.478 0.14 0.00 0.00 4.93
1573 1862 4.773323 TGATCTATCATGACAGGTAGCG 57.227 45.455 0.14 0.00 0.00 4.26
1610 1899 9.542462 TGTCCTATTTATAGATCCGAAAAACTG 57.458 33.333 0.00 0.00 32.05 3.16
1639 1928 3.745975 TGACAGAACAATGCCGTTTCTAG 59.254 43.478 0.00 0.00 0.00 2.43
1642 1931 3.042887 GTTGACAGAACAATGCCGTTTC 58.957 45.455 0.00 0.00 32.36 2.78
1654 1943 1.142667 TGCTGACATGGGTTGACAGAA 59.857 47.619 8.80 0.00 46.81 3.02
1664 1953 3.257393 GTTCTGTAGAGTGCTGACATGG 58.743 50.000 0.00 0.00 0.00 3.66
1715 2022 7.119262 CAGTAAACATTACTCAAACCAGTAGGG 59.881 40.741 0.00 0.00 44.81 3.53
1733 2040 9.337396 CCCAAAATAGCAGATATACAGTAAACA 57.663 33.333 0.00 0.00 0.00 2.83
1736 2043 6.940298 GGCCCAAAATAGCAGATATACAGTAA 59.060 38.462 0.00 0.00 0.00 2.24
1737 2044 6.472887 GGCCCAAAATAGCAGATATACAGTA 58.527 40.000 0.00 0.00 0.00 2.74
1752 2059 2.167662 CCACTTAGAACGGCCCAAAAT 58.832 47.619 0.00 0.00 0.00 1.82
1753 2060 1.143277 TCCACTTAGAACGGCCCAAAA 59.857 47.619 0.00 0.00 0.00 2.44
1755 2062 0.766131 TTCCACTTAGAACGGCCCAA 59.234 50.000 0.00 0.00 0.00 4.12
1756 2063 0.035739 GTTCCACTTAGAACGGCCCA 59.964 55.000 0.00 0.00 37.04 5.36
1757 2064 2.850439 GTTCCACTTAGAACGGCCC 58.150 57.895 0.00 0.00 37.04 5.80
1763 2070 6.411376 TCAGACAACAAAGTTCCACTTAGAA 58.589 36.000 0.00 0.00 37.47 2.10
1764 2071 5.984725 TCAGACAACAAAGTTCCACTTAGA 58.015 37.500 0.00 0.00 37.47 2.10
1765 2072 6.483307 TGATCAGACAACAAAGTTCCACTTAG 59.517 38.462 0.00 0.00 37.47 2.18
1768 2075 4.780815 TGATCAGACAACAAAGTTCCACT 58.219 39.130 0.00 0.00 0.00 4.00
1769 2076 4.816385 TCTGATCAGACAACAAAGTTCCAC 59.184 41.667 21.67 0.00 31.41 4.02
1770 2077 5.034852 TCTGATCAGACAACAAAGTTCCA 57.965 39.130 21.67 0.00 31.41 3.53
1771 2078 5.106396 CCATCTGATCAGACAACAAAGTTCC 60.106 44.000 27.37 0.00 40.75 3.62
1772 2079 5.471456 ACCATCTGATCAGACAACAAAGTTC 59.529 40.000 27.37 0.00 40.75 3.01
1774 2081 4.978099 ACCATCTGATCAGACAACAAAGT 58.022 39.130 27.37 13.40 40.75 2.66
1775 2082 5.335426 CCAACCATCTGATCAGACAACAAAG 60.335 44.000 27.37 13.49 40.75 2.77
1779 2086 3.012518 CCCAACCATCTGATCAGACAAC 58.987 50.000 27.37 0.00 40.75 3.32
1928 2237 8.980481 AAATCTCTAGTCAAGTTTTCCTGAAA 57.020 30.769 0.00 0.00 0.00 2.69
1946 2256 5.774498 AAACCGCAAGAAAGAAAATCTCT 57.226 34.783 0.00 0.00 43.02 3.10
1962 2272 1.739067 AGGCTTCATCAGTAAACCGC 58.261 50.000 0.00 0.00 0.00 5.68
1992 2302 4.960469 AGGTTTGGATACCTACATCGAGAA 59.040 41.667 0.00 0.00 46.65 2.87
2083 2394 2.179547 CACCGTGAACTGCAGCACA 61.180 57.895 15.27 11.55 34.78 4.57
2206 2518 4.063689 ACATCAGCACAAGAACAGAAGAG 58.936 43.478 0.00 0.00 0.00 2.85
2233 2545 6.976636 AGTTCAGTAAATTAAGCAGAGAGC 57.023 37.500 0.00 0.00 46.19 4.09
2235 2547 9.204570 GTACAAGTTCAGTAAATTAAGCAGAGA 57.795 33.333 0.00 0.00 0.00 3.10
2245 2557 7.996385 AGCACAAAAGTACAAGTTCAGTAAAT 58.004 30.769 0.00 0.00 0.00 1.40
2268 2580 3.694072 TGGTCCAAACATAATGCTGTAGC 59.306 43.478 0.00 0.00 42.50 3.58
2271 2583 4.032960 TCTGGTCCAAACATAATGCTGT 57.967 40.909 0.00 0.00 0.00 4.40
2383 2695 1.080435 ACACATGCGACAGCTGATCG 61.080 55.000 23.35 24.33 45.42 3.69
2452 2764 2.880890 GCTTCCAGTTTGCTTCTCTTCA 59.119 45.455 0.00 0.00 0.00 3.02
2537 2849 7.552330 ACAAAATTACAAGCAAACTCCACAATT 59.448 29.630 0.00 0.00 0.00 2.32
2548 2860 4.874966 AGCAAGCAACAAAATTACAAGCAA 59.125 33.333 0.00 0.00 0.00 3.91
2577 2889 3.057526 CACGTCAGCCTATGGATATCGAA 60.058 47.826 0.00 0.00 0.00 3.71
2578 2890 2.488153 CACGTCAGCCTATGGATATCGA 59.512 50.000 0.00 0.00 0.00 3.59
2579 2891 2.229062 ACACGTCAGCCTATGGATATCG 59.771 50.000 0.00 0.00 0.00 2.92
2581 2893 4.689612 AAACACGTCAGCCTATGGATAT 57.310 40.909 0.00 0.00 0.00 1.63
2582 2894 4.188462 CAAAACACGTCAGCCTATGGATA 58.812 43.478 0.00 0.00 0.00 2.59
2583 2895 3.009723 CAAAACACGTCAGCCTATGGAT 58.990 45.455 0.00 0.00 0.00 3.41
2584 2896 2.224426 ACAAAACACGTCAGCCTATGGA 60.224 45.455 0.00 0.00 0.00 3.41
2588 2900 2.605837 TCACAAAACACGTCAGCCTA 57.394 45.000 0.00 0.00 0.00 3.93
2618 2930 1.279496 CTCCTTGTCATCCCAGTCCA 58.721 55.000 0.00 0.00 0.00 4.02
2652 2964 1.153939 CTCTGGCTTGACGTCCTCG 60.154 63.158 14.12 2.17 43.34 4.63
2702 3014 7.061789 CACATCATTATTCATCAATTCATGCGG 59.938 37.037 0.00 0.00 0.00 5.69
2829 3143 3.684305 TGATCATTTCTAACCGCACTGTG 59.316 43.478 2.76 2.76 0.00 3.66
2846 3160 8.291191 TGCATAAAAACAAGATATGGTGATCA 57.709 30.769 0.00 0.00 0.00 2.92
2847 3161 9.754382 ATTGCATAAAAACAAGATATGGTGATC 57.246 29.630 0.00 0.00 0.00 2.92
2893 3209 3.128068 CGTAGCCCTGAAAATAACCAACC 59.872 47.826 0.00 0.00 0.00 3.77
3034 3350 0.405198 TCCCAATCTTCAGGCTGCAA 59.595 50.000 10.34 4.48 0.00 4.08
3045 3361 4.043059 CCATCTTCCTCATCATCCCAATCT 59.957 45.833 0.00 0.00 0.00 2.40
3147 3463 9.199982 CATTGCTGATTAAAGTGTTTCTGAATT 57.800 29.630 0.00 0.00 0.00 2.17
3355 3672 4.394300 AGCACAATAAAGATGTCAGAGCAC 59.606 41.667 0.00 0.00 0.00 4.40
3455 3772 4.143030 CGAGTTACTTGGCAATCAGAACAG 60.143 45.833 0.00 0.00 0.00 3.16
3456 3773 3.745975 CGAGTTACTTGGCAATCAGAACA 59.254 43.478 0.00 0.00 0.00 3.18
3513 3832 3.084786 ACCTGCAGACATAAGAAAAGGC 58.915 45.455 17.39 0.00 0.00 4.35
3583 3902 1.614903 TCAGCAAATGTCTTGGCCAAG 59.385 47.619 35.52 35.52 39.71 3.61
3636 3955 7.148340 GGTGATAGATGATGCTAGGTAAAATGC 60.148 40.741 0.00 0.00 0.00 3.56
3645 3965 9.887629 AAATGATAAGGTGATAGATGATGCTAG 57.112 33.333 0.00 0.00 0.00 3.42
3685 4005 7.173907 GCAAGATTCAGCACCATTAGTACATAT 59.826 37.037 0.00 0.00 0.00 1.78
3738 4058 0.249699 TCTTCTTTTCAGCCGCGTCA 60.250 50.000 4.92 0.00 0.00 4.35
3744 4064 3.755905 CCTCTTCCTTCTTCTTTTCAGCC 59.244 47.826 0.00 0.00 0.00 4.85
3866 4198 1.169034 TGGCATGCACGCTAACACAA 61.169 50.000 21.36 0.00 0.00 3.33
3875 4207 1.910819 GAACGTAAAATGGCATGCACG 59.089 47.619 21.36 20.78 35.62 5.34
3878 4210 3.487544 GGAGAGAACGTAAAATGGCATGC 60.488 47.826 9.90 9.90 0.00 4.06
3883 4215 4.473477 AGAGGGAGAGAACGTAAAATGG 57.527 45.455 0.00 0.00 0.00 3.16
3890 4222 2.234908 CCATGAAAGAGGGAGAGAACGT 59.765 50.000 0.00 0.00 0.00 3.99
3975 4307 1.629043 TGGTAGTGACAGGACAGGAC 58.371 55.000 0.00 0.00 0.00 3.85
3976 4308 2.623418 ATGGTAGTGACAGGACAGGA 57.377 50.000 0.00 0.00 0.00 3.86
3978 4310 4.142138 GGACTAATGGTAGTGACAGGACAG 60.142 50.000 0.00 0.00 40.82 3.51
3979 4311 3.767673 GGACTAATGGTAGTGACAGGACA 59.232 47.826 0.00 0.00 40.82 4.02
3994 4326 7.069902 AGTGGGGGATATATGTAGGACTAAT 57.930 40.000 0.00 0.00 0.00 1.73
3996 4328 6.047479 TGAAGTGGGGGATATATGTAGGACTA 59.953 42.308 0.00 0.00 0.00 2.59
3997 4329 5.162760 TGAAGTGGGGGATATATGTAGGACT 60.163 44.000 0.00 0.00 0.00 3.85
3999 4331 5.363124 TGAAGTGGGGGATATATGTAGGA 57.637 43.478 0.00 0.00 0.00 2.94
4000 4332 6.642733 ATTGAAGTGGGGGATATATGTAGG 57.357 41.667 0.00 0.00 0.00 3.18
4002 4334 9.973661 CATTTATTGAAGTGGGGGATATATGTA 57.026 33.333 0.00 0.00 0.00 2.29
4004 4336 7.396907 TGCATTTATTGAAGTGGGGGATATATG 59.603 37.037 0.00 0.00 0.00 1.78
4039 4371 9.941325 GATGATATCAATTAGACTTCTGGTCAT 57.059 33.333 9.99 0.00 46.72 3.06
4092 4426 1.528586 CGTGCTGCTATTCATAGGCAC 59.471 52.381 13.91 13.91 41.25 5.01
4098 4432 3.131933 AGAGAAGACGTGCTGCTATTCAT 59.868 43.478 0.00 0.00 30.35 2.57
4100 4434 3.157932 AGAGAAGACGTGCTGCTATTC 57.842 47.619 0.00 0.00 30.35 1.75
4105 4439 0.514691 CCAAAGAGAAGACGTGCTGC 59.485 55.000 0.00 0.00 0.00 5.25
4107 4441 2.622064 AACCAAAGAGAAGACGTGCT 57.378 45.000 0.00 0.00 0.00 4.40
4108 4442 3.184581 CAGTAACCAAAGAGAAGACGTGC 59.815 47.826 0.00 0.00 0.00 5.34
4109 4443 3.741344 CCAGTAACCAAAGAGAAGACGTG 59.259 47.826 0.00 0.00 0.00 4.49
4110 4444 3.640029 TCCAGTAACCAAAGAGAAGACGT 59.360 43.478 0.00 0.00 0.00 4.34
4112 4446 5.612351 AGTTCCAGTAACCAAAGAGAAGAC 58.388 41.667 0.00 0.00 39.03 3.01
4113 4447 5.602978 AGAGTTCCAGTAACCAAAGAGAAGA 59.397 40.000 0.00 0.00 39.03 2.87
4114 4448 5.859495 AGAGTTCCAGTAACCAAAGAGAAG 58.141 41.667 0.00 0.00 39.03 2.85
4116 4450 5.888982 AAGAGTTCCAGTAACCAAAGAGA 57.111 39.130 0.00 0.00 39.03 3.10
4117 4451 6.292150 AGAAAGAGTTCCAGTAACCAAAGAG 58.708 40.000 0.00 0.00 39.03 2.85
4119 4453 5.470437 GGAGAAAGAGTTCCAGTAACCAAAG 59.530 44.000 0.00 0.00 39.03 2.77
4120 4454 5.132144 AGGAGAAAGAGTTCCAGTAACCAAA 59.868 40.000 0.00 0.00 39.03 3.28
4121 4455 4.658901 AGGAGAAAGAGTTCCAGTAACCAA 59.341 41.667 0.00 0.00 39.03 3.67
4122 4456 4.232091 AGGAGAAAGAGTTCCAGTAACCA 58.768 43.478 0.00 0.00 39.03 3.67
4123 4457 4.893829 AGGAGAAAGAGTTCCAGTAACC 57.106 45.455 0.00 0.00 39.03 2.85
4124 4458 8.722394 CAATTTAGGAGAAAGAGTTCCAGTAAC 58.278 37.037 0.00 0.00 38.46 2.50
4125 4459 8.437575 ACAATTTAGGAGAAAGAGTTCCAGTAA 58.562 33.333 0.00 0.00 35.88 2.24
4126 4460 7.974504 ACAATTTAGGAGAAAGAGTTCCAGTA 58.025 34.615 0.00 0.00 35.88 2.74
4127 4461 6.842676 ACAATTTAGGAGAAAGAGTTCCAGT 58.157 36.000 0.00 0.00 35.88 4.00
4134 4468 6.884280 ACCACAACAATTTAGGAGAAAGAG 57.116 37.500 0.00 0.00 0.00 2.85
4155 4489 7.545489 ACAGTACAAGTCTAATAGTAGCAACC 58.455 38.462 0.00 0.00 0.00 3.77
4156 4490 8.983307 AACAGTACAAGTCTAATAGTAGCAAC 57.017 34.615 0.00 0.00 0.00 4.17
4159 4493 8.033626 ACCAAACAGTACAAGTCTAATAGTAGC 58.966 37.037 0.00 0.00 0.00 3.58
4306 4646 7.437862 GGTCTAGCTAATCAAGAATGTTCTGAG 59.562 40.741 0.00 0.00 37.65 3.35
4323 4663 7.820578 GACCAGATAAGTTTAGGTCTAGCTA 57.179 40.000 0.00 0.00 44.10 3.32
4367 4707 0.178767 CCTTGTCCTCATCATCGGCA 59.821 55.000 0.00 0.00 0.00 5.69
4376 4716 1.003580 GCCTTGTCATCCTTGTCCTCA 59.996 52.381 0.00 0.00 0.00 3.86
4408 4748 1.398739 GCTTCTCGTCATCAGACTCGA 59.601 52.381 0.00 0.00 42.73 4.04
4409 4749 1.131315 TGCTTCTCGTCATCAGACTCG 59.869 52.381 0.00 0.00 42.73 4.18
4552 4897 1.456518 CGGCCTCCTCTCATCCTCA 60.457 63.158 0.00 0.00 0.00 3.86
4586 4935 7.280876 TGAGAGACAACTAATAAATCATGGCAC 59.719 37.037 0.00 0.00 0.00 5.01
4803 5276 1.069513 ACCATCTTGACGTTTCGGTCA 59.930 47.619 0.00 0.00 44.74 4.02
4807 5280 1.148310 AGCACCATCTTGACGTTTCG 58.852 50.000 0.00 0.00 0.00 3.46
4810 5283 1.238439 CCAAGCACCATCTTGACGTT 58.762 50.000 5.19 0.00 44.61 3.99
4835 5308 1.667830 GCTAGACCGCAACACAGCA 60.668 57.895 0.00 0.00 0.00 4.41
4848 5321 5.420104 TCTCAAGTCTGAACATGATGCTAGA 59.580 40.000 0.00 0.00 33.03 2.43
4851 5324 4.020396 ACTCTCAAGTCTGAACATGATGCT 60.020 41.667 0.00 0.00 33.03 3.79
4875 5348 5.550232 TGCATCTACATAGTGCAAAACAG 57.450 39.130 11.35 0.00 44.99 3.16
4884 5357 2.758423 TCGTGTGGTGCATCTACATAGT 59.242 45.455 0.00 0.00 39.57 2.12
4979 5466 1.961180 CTAGACTCGGTTGCCCCTGG 61.961 65.000 0.00 0.00 0.00 4.45
4980 5467 1.258445 ACTAGACTCGGTTGCCCCTG 61.258 60.000 0.00 0.00 0.00 4.45
4981 5468 0.971447 GACTAGACTCGGTTGCCCCT 60.971 60.000 0.00 0.00 0.00 4.79
4982 5469 1.255667 TGACTAGACTCGGTTGCCCC 61.256 60.000 0.00 0.00 0.00 5.80
4983 5470 0.824759 ATGACTAGACTCGGTTGCCC 59.175 55.000 0.00 0.00 0.00 5.36
4984 5471 2.094182 TCAATGACTAGACTCGGTTGCC 60.094 50.000 0.00 0.00 0.00 4.52
4985 5472 3.232213 TCAATGACTAGACTCGGTTGC 57.768 47.619 0.00 0.00 0.00 4.17
4986 5473 8.425577 AATTTATCAATGACTAGACTCGGTTG 57.574 34.615 0.00 0.00 0.00 3.77
4987 5474 9.530633 GTAATTTATCAATGACTAGACTCGGTT 57.469 33.333 0.00 0.00 0.00 4.44
4988 5475 8.692710 TGTAATTTATCAATGACTAGACTCGGT 58.307 33.333 0.00 0.00 0.00 4.69
4989 5476 8.969267 GTGTAATTTATCAATGACTAGACTCGG 58.031 37.037 0.00 0.00 0.00 4.63
4990 5477 8.969267 GGTGTAATTTATCAATGACTAGACTCG 58.031 37.037 0.00 0.00 0.00 4.18
4991 5478 8.969267 CGGTGTAATTTATCAATGACTAGACTC 58.031 37.037 0.00 0.00 0.00 3.36
4992 5479 8.475639 ACGGTGTAATTTATCAATGACTAGACT 58.524 33.333 0.00 0.00 0.00 3.24
4993 5480 8.540492 CACGGTGTAATTTATCAATGACTAGAC 58.460 37.037 0.00 0.00 0.00 2.59
4994 5481 8.255206 ACACGGTGTAATTTATCAATGACTAGA 58.745 33.333 12.96 0.00 0.00 2.43
4995 5482 8.420374 ACACGGTGTAATTTATCAATGACTAG 57.580 34.615 12.96 0.00 0.00 2.57
4996 5483 8.255206 AGACACGGTGTAATTTATCAATGACTA 58.745 33.333 14.74 0.00 0.00 2.59
4997 5484 7.103641 AGACACGGTGTAATTTATCAATGACT 58.896 34.615 14.74 0.00 0.00 3.41
4998 5485 7.303634 AGACACGGTGTAATTTATCAATGAC 57.696 36.000 14.74 0.00 0.00 3.06
4999 5486 7.625395 GCAAGACACGGTGTAATTTATCAATGA 60.625 37.037 14.74 0.00 0.00 2.57
5000 5487 6.468956 GCAAGACACGGTGTAATTTATCAATG 59.531 38.462 14.74 4.89 0.00 2.82
5001 5488 6.150307 TGCAAGACACGGTGTAATTTATCAAT 59.850 34.615 14.74 0.00 0.00 2.57
5002 5489 5.470437 TGCAAGACACGGTGTAATTTATCAA 59.530 36.000 14.74 0.00 0.00 2.57
5003 5490 4.998033 TGCAAGACACGGTGTAATTTATCA 59.002 37.500 14.74 7.20 0.00 2.15
5004 5491 5.539582 TGCAAGACACGGTGTAATTTATC 57.460 39.130 14.74 0.00 0.00 1.75
5005 5492 5.703592 TCTTGCAAGACACGGTGTAATTTAT 59.296 36.000 25.16 0.00 0.00 1.40
5006 5493 5.057819 TCTTGCAAGACACGGTGTAATTTA 58.942 37.500 25.16 0.00 0.00 1.40
5007 5494 3.880490 TCTTGCAAGACACGGTGTAATTT 59.120 39.130 25.16 6.55 0.00 1.82
5008 5495 3.472652 TCTTGCAAGACACGGTGTAATT 58.527 40.909 25.16 9.42 0.00 1.40
5009 5496 3.120321 TCTTGCAAGACACGGTGTAAT 57.880 42.857 25.16 3.05 0.00 1.89
5010 5497 2.605837 TCTTGCAAGACACGGTGTAA 57.394 45.000 25.16 3.51 0.00 2.41
5011 5498 2.831685 ATCTTGCAAGACACGGTGTA 57.168 45.000 30.66 6.22 37.98 2.90
5012 5499 1.967319 AATCTTGCAAGACACGGTGT 58.033 45.000 30.66 14.66 37.98 4.16
5013 5500 4.685169 ATAAATCTTGCAAGACACGGTG 57.315 40.909 30.66 6.58 37.98 4.94
5014 5501 6.349300 AGATATAAATCTTGCAAGACACGGT 58.651 36.000 30.66 17.43 39.55 4.83
5015 5502 6.703607 AGAGATATAAATCTTGCAAGACACGG 59.296 38.462 30.66 2.72 42.73 4.94
5016 5503 7.706281 AGAGATATAAATCTTGCAAGACACG 57.294 36.000 30.66 3.54 42.73 4.49
5023 5510 9.658799 GCCACTATTAGAGATATAAATCTTGCA 57.341 33.333 0.00 0.00 42.73 4.08
5024 5511 8.812329 CGCCACTATTAGAGATATAAATCTTGC 58.188 37.037 0.00 0.00 42.73 4.01
5031 5518 9.470399 TGGTTATCGCCACTATTAGAGATATAA 57.530 33.333 0.00 0.00 32.81 0.98
5032 5519 9.121658 CTGGTTATCGCCACTATTAGAGATATA 57.878 37.037 0.00 0.00 34.36 0.86
5033 5520 7.068839 CCTGGTTATCGCCACTATTAGAGATAT 59.931 40.741 0.00 0.00 34.36 1.63
5034 5521 6.377429 CCTGGTTATCGCCACTATTAGAGATA 59.623 42.308 0.00 0.00 34.36 1.98
5035 5522 5.186021 CCTGGTTATCGCCACTATTAGAGAT 59.814 44.000 0.00 0.56 34.36 2.75
5036 5523 4.523173 CCTGGTTATCGCCACTATTAGAGA 59.477 45.833 0.00 0.00 34.36 3.10
5037 5524 4.523173 TCCTGGTTATCGCCACTATTAGAG 59.477 45.833 0.00 0.00 34.36 2.43
5038 5525 4.476297 TCCTGGTTATCGCCACTATTAGA 58.524 43.478 0.00 0.00 34.36 2.10
5039 5526 4.810790 CTCCTGGTTATCGCCACTATTAG 58.189 47.826 0.00 0.00 34.36 1.73
5040 5527 3.006537 GCTCCTGGTTATCGCCACTATTA 59.993 47.826 0.00 0.00 34.36 0.98
5041 5528 2.224305 GCTCCTGGTTATCGCCACTATT 60.224 50.000 0.00 0.00 34.36 1.73
5042 5529 1.344763 GCTCCTGGTTATCGCCACTAT 59.655 52.381 0.00 0.00 34.36 2.12
5043 5530 0.750850 GCTCCTGGTTATCGCCACTA 59.249 55.000 0.00 0.00 34.36 2.74
5044 5531 1.264749 TGCTCCTGGTTATCGCCACT 61.265 55.000 0.00 0.00 34.36 4.00
5045 5532 0.392461 TTGCTCCTGGTTATCGCCAC 60.392 55.000 0.00 0.00 34.36 5.01
5046 5533 0.392461 GTTGCTCCTGGTTATCGCCA 60.392 55.000 0.00 0.00 36.97 5.69
5047 5534 1.095807 GGTTGCTCCTGGTTATCGCC 61.096 60.000 0.00 0.00 0.00 5.54
5048 5535 1.429148 CGGTTGCTCCTGGTTATCGC 61.429 60.000 0.00 0.00 0.00 4.58
5049 5536 0.174845 TCGGTTGCTCCTGGTTATCG 59.825 55.000 0.00 0.00 0.00 2.92
5050 5537 1.941325 CTCGGTTGCTCCTGGTTATC 58.059 55.000 0.00 0.00 0.00 1.75
5080 5567 5.446143 TGCAAGAAACGGTGTCATTTATT 57.554 34.783 0.37 0.00 0.00 1.40
5087 5574 3.626028 AATCTTGCAAGAAACGGTGTC 57.374 42.857 31.55 0.00 38.77 3.67
5143 5692 6.945938 TCTACTAGAGCAAATCTGGAGTAC 57.054 41.667 0.00 0.00 38.78 2.73
5244 5833 4.051922 AGTGTTCTTGACTTCGTAGCAAG 58.948 43.478 15.13 15.13 37.11 4.01
5267 5856 3.242867 AGAAATCGATCCCTATGGCTCA 58.757 45.455 0.00 0.00 0.00 4.26
5268 5857 3.971245 AGAAATCGATCCCTATGGCTC 57.029 47.619 0.00 0.00 0.00 4.70
5272 5861 4.416620 GCGACTAGAAATCGATCCCTATG 58.583 47.826 0.00 1.28 42.25 2.23
5273 5862 3.127203 CGCGACTAGAAATCGATCCCTAT 59.873 47.826 0.00 0.00 42.25 2.57
5274 5863 2.483106 CGCGACTAGAAATCGATCCCTA 59.517 50.000 0.00 2.54 42.25 3.53
5276 5865 1.001597 ACGCGACTAGAAATCGATCCC 60.002 52.381 15.93 0.00 42.25 3.85
5277 5866 2.402640 ACGCGACTAGAAATCGATCC 57.597 50.000 15.93 0.00 42.25 3.36
5278 5867 2.903707 GCTACGCGACTAGAAATCGATC 59.096 50.000 15.93 0.00 42.25 3.69
5279 5868 2.548904 AGCTACGCGACTAGAAATCGAT 59.451 45.455 15.93 0.00 42.25 3.59
5280 5869 1.938577 AGCTACGCGACTAGAAATCGA 59.061 47.619 15.93 0.00 42.25 3.59
5282 5871 3.692576 TGAAGCTACGCGACTAGAAATC 58.307 45.455 15.93 5.17 0.00 2.17
5283 5872 3.777465 TGAAGCTACGCGACTAGAAAT 57.223 42.857 15.93 0.00 0.00 2.17
5284 5873 3.777465 ATGAAGCTACGCGACTAGAAA 57.223 42.857 15.93 0.00 0.00 2.52
5285 5874 4.888038 TTATGAAGCTACGCGACTAGAA 57.112 40.909 15.93 0.00 0.00 2.10
5286 5875 6.549912 TTATTATGAAGCTACGCGACTAGA 57.450 37.500 15.93 0.00 0.00 2.43
5287 5876 7.798486 AATTATTATGAAGCTACGCGACTAG 57.202 36.000 15.93 6.20 0.00 2.57
5288 5877 8.484799 CAAAATTATTATGAAGCTACGCGACTA 58.515 33.333 15.93 0.00 0.00 2.59
5289 5878 7.345192 CAAAATTATTATGAAGCTACGCGACT 58.655 34.615 15.93 3.77 0.00 4.18
5290 5879 6.085068 GCAAAATTATTATGAAGCTACGCGAC 59.915 38.462 15.93 0.83 0.00 5.19
5291 5880 6.133392 GCAAAATTATTATGAAGCTACGCGA 58.867 36.000 15.93 0.00 0.00 5.87
5292 5881 5.906838 TGCAAAATTATTATGAAGCTACGCG 59.093 36.000 3.53 3.53 0.00 6.01
5293 5882 7.678194 TTGCAAAATTATTATGAAGCTACGC 57.322 32.000 0.00 0.00 0.00 4.42
5294 5883 8.261908 GCTTTGCAAAATTATTATGAAGCTACG 58.738 33.333 13.84 0.00 35.39 3.51
5295 5884 9.305925 AGCTTTGCAAAATTATTATGAAGCTAC 57.694 29.630 13.84 0.00 43.68 3.58
5296 5885 9.874205 AAGCTTTGCAAAATTATTATGAAGCTA 57.126 25.926 13.84 0.00 44.43 3.32
5297 5886 8.782339 AAGCTTTGCAAAATTATTATGAAGCT 57.218 26.923 13.84 10.42 46.39 3.74
5298 5887 8.118607 GGAAGCTTTGCAAAATTATTATGAAGC 58.881 33.333 13.84 8.21 37.75 3.86
5299 5888 8.323140 CGGAAGCTTTGCAAAATTATTATGAAG 58.677 33.333 13.84 0.00 0.00 3.02
5300 5889 8.183830 CGGAAGCTTTGCAAAATTATTATGAA 57.816 30.769 13.84 0.00 0.00 2.57
5301 5890 7.754069 CGGAAGCTTTGCAAAATTATTATGA 57.246 32.000 13.84 0.00 0.00 2.15
5320 5909 4.981806 TCCAAAGGAAATTATGCGGAAG 57.018 40.909 0.00 0.00 0.00 3.46
5321 5910 5.420421 TCAATCCAAAGGAAATTATGCGGAA 59.580 36.000 0.00 0.00 34.34 4.30
5322 5911 4.952957 TCAATCCAAAGGAAATTATGCGGA 59.047 37.500 0.00 0.00 34.34 5.54
5323 5912 5.261209 TCAATCCAAAGGAAATTATGCGG 57.739 39.130 0.00 0.00 34.34 5.69
5324 5913 8.517878 AGATATCAATCCAAAGGAAATTATGCG 58.482 33.333 5.32 0.00 34.34 4.73
5499 6330 7.790782 ACAATCCTAATATTTTTGTGGGTGT 57.209 32.000 0.00 0.00 0.00 4.16
5500 6331 9.500785 AAAACAATCCTAATATTTTTGTGGGTG 57.499 29.630 0.00 0.00 31.34 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.