Multiple sequence alignment - TraesCS2A01G545500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G545500 chr2A 100.000 5787 0 0 1 5787 754352027 754357813 0.000000e+00 10687.0
1 TraesCS2A01G545500 chr2D 91.160 2613 144 50 790 3381 622917669 622920215 0.000000e+00 3465.0
2 TraesCS2A01G545500 chr2D 91.588 2235 119 36 1516 3697 622918348 622920566 0.000000e+00 3022.0
3 TraesCS2A01G545500 chr2D 88.820 805 55 12 3690 4476 622920623 622921410 0.000000e+00 955.0
4 TraesCS2A01G545500 chr2D 92.464 345 19 5 4922 5261 622921866 622922208 2.420000e-133 486.0
5 TraesCS2A01G545500 chr2D 82.857 455 45 14 326 764 622916978 622917415 1.520000e-100 377.0
6 TraesCS2A01G545500 chr2D 92.823 209 9 4 4587 4793 622921580 622921784 1.220000e-76 298.0
7 TraesCS2A01G545500 chr2D 89.474 133 8 5 5289 5418 622922205 622922334 4.640000e-36 163.0
8 TraesCS2A01G545500 chr2D 95.122 41 2 0 5678 5718 622922615 622922655 1.350000e-06 65.8
9 TraesCS2A01G545500 chr2B 91.069 2497 127 31 2022 4477 765065033 765067474 0.000000e+00 3288.0
10 TraesCS2A01G545500 chr2B 86.341 1208 94 42 913 2080 765063858 765065034 0.000000e+00 1251.0
11 TraesCS2A01G545500 chr2B 87.437 788 67 18 4587 5356 765067709 765068482 0.000000e+00 878.0
12 TraesCS2A01G545500 chr2B 84.547 783 77 24 85 853 765062799 765063551 0.000000e+00 736.0
13 TraesCS2A01G545500 chr2B 89.024 82 6 1 5504 5582 765068789 765068870 1.330000e-16 99.0
14 TraesCS2A01G545500 chr2B 96.970 33 1 0 15 47 139367319 139367287 8.100000e-04 56.5
15 TraesCS2A01G545500 chr2B 100.000 29 0 0 21 49 560432840 560432868 3.000000e-03 54.7
16 TraesCS2A01G545500 chr2B 100.000 28 0 0 20 47 377535697 377535724 1.000000e-02 52.8
17 TraesCS2A01G545500 chr7B 89.020 510 49 1 1 510 84023628 84023126 4.920000e-175 625.0
18 TraesCS2A01G545500 chr7B 98.649 74 1 0 5425 5498 662744415 662744488 1.310000e-26 132.0
19 TraesCS2A01G545500 chr7B 91.463 82 7 0 5638 5719 62791607 62791526 4.740000e-21 113.0
20 TraesCS2A01G545500 chr7B 95.082 61 3 0 5725 5785 62791596 62791536 4.770000e-16 97.1
21 TraesCS2A01G545500 chr7B 91.304 69 3 1 5517 5582 62791810 62791742 2.220000e-14 91.6
22 TraesCS2A01G545500 chrUn 98.649 74 1 0 5425 5498 298933302 298933375 1.310000e-26 132.0
23 TraesCS2A01G545500 chrUn 98.649 74 1 0 5425 5498 438111232 438111305 1.310000e-26 132.0
24 TraesCS2A01G545500 chr7D 98.649 74 1 0 5425 5498 231589819 231589746 1.310000e-26 132.0
25 TraesCS2A01G545500 chr7D 98.649 74 1 0 5425 5498 231592452 231592525 1.310000e-26 132.0
26 TraesCS2A01G545500 chr7D 100.000 28 0 0 20 47 595527325 595527352 1.000000e-02 52.8
27 TraesCS2A01G545500 chr5D 98.649 74 1 0 5425 5498 503324114 503324041 1.310000e-26 132.0
28 TraesCS2A01G545500 chr5D 100.000 28 0 0 18 45 268282678 268282651 1.000000e-02 52.8
29 TraesCS2A01G545500 chr3D 98.649 74 1 0 5425 5498 24158765 24158692 1.310000e-26 132.0
30 TraesCS2A01G545500 chr1D 98.649 74 1 0 5425 5498 244194525 244194452 1.310000e-26 132.0
31 TraesCS2A01G545500 chr1A 98.649 74 1 0 5425 5498 554455129 554455202 1.310000e-26 132.0
32 TraesCS2A01G545500 chr1B 95.652 46 2 0 43 88 51601856 51601811 2.240000e-09 75.0
33 TraesCS2A01G545500 chr4A 85.714 63 7 2 27 89 703756111 703756171 1.350000e-06 65.8
34 TraesCS2A01G545500 chr6B 100.000 28 0 0 20 47 4288895 4288922 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G545500 chr2A 754352027 754357813 5786 False 10687.000 10687 100.0000 1 5787 1 chr2A.!!$F1 5786
1 TraesCS2A01G545500 chr2D 622916978 622922655 5677 False 1103.975 3465 90.5385 326 5718 8 chr2D.!!$F1 5392
2 TraesCS2A01G545500 chr2B 765062799 765068870 6071 False 1250.400 3288 87.6836 85 5582 5 chr2B.!!$F3 5497
3 TraesCS2A01G545500 chr7B 84023126 84023628 502 True 625.000 625 89.0200 1 510 1 chr7B.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.0 0.00 0.0 0.00 2.71 F
994 1496 0.105039 GGATACTCCACGGAAGCAGG 59.895 60.0 0.00 0.0 36.28 4.85 F
1260 1768 0.393944 AGATAGTCGAGGTCACCGCA 60.394 55.0 0.00 0.0 0.00 5.69 F
2615 3214 0.679640 TGGGTGAAATGGATGGCGAC 60.680 55.0 0.00 0.0 0.00 5.19 F
3527 4154 0.316204 ACTTTGCTGTTCTGCATGCC 59.684 50.0 16.68 0.0 42.96 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1561 2079 0.036010 GTCATAGCCCTGTGCACAGT 60.036 55.000 37.55 25.4 44.83 3.55 R
1843 2374 2.420058 AGGGCATAAAGGTAGCACAC 57.580 50.000 0.00 0.0 33.12 3.82 R
2774 3373 3.243301 ACAATCACAGAAAGCAAGTGCAG 60.243 43.478 6.00 0.0 45.16 4.41 R
4535 5276 1.152963 AGCGTGCAAGGAAACTGGT 60.153 52.632 0.79 0.0 42.68 4.00 R
5015 5921 0.748005 GTACCCATGTGAATGCGCCT 60.748 55.000 4.18 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.475682 GTGTAACCAGTACTCCCTCCG 59.524 57.143 0.00 0.00 33.46 4.63
37 38 1.000107 AGTACTCCCTCCGTCCCAC 60.000 63.158 0.00 0.00 0.00 4.61
38 39 1.304713 GTACTCCCTCCGTCCCACA 60.305 63.158 0.00 0.00 0.00 4.17
39 40 0.901580 GTACTCCCTCCGTCCCACAA 60.902 60.000 0.00 0.00 0.00 3.33
40 41 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
41 42 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
42 43 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
43 44 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
44 45 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
45 46 3.386063 TCCCTCCGTCCCACAATATAAA 58.614 45.455 0.00 0.00 0.00 1.40
89 90 2.124403 TCGGACGGAGGGAGTAGC 60.124 66.667 0.00 0.00 0.00 3.58
157 158 2.291209 TGCCACCAATCACAGATTGT 57.709 45.000 16.04 4.64 0.00 2.71
219 220 5.107824 TGACAACACAAAAACATGACATGG 58.892 37.500 19.39 3.94 33.60 3.66
222 223 2.100584 ACACAAAAACATGACATGGCGT 59.899 40.909 19.39 6.10 33.60 5.68
236 237 1.246649 TGGCGTGAAGATGCATGTTT 58.753 45.000 10.81 1.49 35.60 2.83
241 242 3.426560 GCGTGAAGATGCATGTTTGATCA 60.427 43.478 10.81 1.08 33.89 2.92
265 266 8.250332 TCAAATTCCATATTAACCAACTCTTGC 58.750 33.333 0.00 0.00 0.00 4.01
286 287 5.123227 TGCCTGCTACAATATCAAGTAACC 58.877 41.667 0.00 0.00 0.00 2.85
291 292 5.981315 TGCTACAATATCAAGTAACCGCTAC 59.019 40.000 0.00 0.00 0.00 3.58
320 326 4.039245 TCAAGACTGACTAAGGTGGTTCAG 59.961 45.833 0.00 0.00 0.00 3.02
356 362 2.502130 AGAAGGCCCAGAAGTTAGCTAC 59.498 50.000 0.00 0.00 0.00 3.58
428 448 1.639298 CTGCCTACGCTTTCCTGCAC 61.639 60.000 0.00 0.00 35.36 4.57
457 477 3.637432 TGGCTCAAATTTTACAGCAACG 58.363 40.909 13.11 0.00 33.22 4.10
458 478 3.316588 TGGCTCAAATTTTACAGCAACGA 59.683 39.130 13.11 0.00 33.22 3.85
463 483 2.961522 ATTTTACAGCAACGACACCG 57.038 45.000 0.00 0.00 42.50 4.94
469 489 3.419759 GCAACGACACCGCGGATT 61.420 61.111 35.90 18.58 39.95 3.01
470 490 2.776072 CAACGACACCGCGGATTC 59.224 61.111 35.90 24.87 39.95 2.52
517 537 0.248621 CCAAATCTGGCGCGGAAATC 60.249 55.000 8.83 0.00 35.39 2.17
518 538 0.734889 CAAATCTGGCGCGGAAATCT 59.265 50.000 8.83 0.00 0.00 2.40
519 539 1.133025 CAAATCTGGCGCGGAAATCTT 59.867 47.619 8.83 0.00 0.00 2.40
520 540 0.734889 AATCTGGCGCGGAAATCTTG 59.265 50.000 8.83 0.00 0.00 3.02
521 541 1.097547 ATCTGGCGCGGAAATCTTGG 61.098 55.000 8.83 0.00 0.00 3.61
522 542 3.401243 CTGGCGCGGAAATCTTGGC 62.401 63.158 8.83 0.00 0.00 4.52
526 546 3.799755 GCGGAAATCTTGGCGCGT 61.800 61.111 8.43 0.00 0.00 6.01
536 556 0.442699 CTTGGCGCGTAGAAAGGAAC 59.557 55.000 8.43 0.00 0.00 3.62
679 703 1.733526 GAGGAAGGAGAGCTCGAGC 59.266 63.158 30.01 30.01 42.49 5.03
704 728 2.944954 TCCGGTGGGAGGAGGAGA 60.945 66.667 0.00 0.00 37.43 3.71
705 729 2.443016 CCGGTGGGAGGAGGAGAG 60.443 72.222 0.00 0.00 34.06 3.20
707 731 2.997584 CGGTGGGAGGAGGAGAGGA 61.998 68.421 0.00 0.00 0.00 3.71
709 733 1.585651 GGTGGGAGGAGGAGAGGAGA 61.586 65.000 0.00 0.00 0.00 3.71
711 735 1.292941 TGGGAGGAGGAGAGGAGAGG 61.293 65.000 0.00 0.00 0.00 3.69
712 736 0.996762 GGGAGGAGGAGAGGAGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
719 743 1.293683 GGAGAGGAGAGGAGGAGGGT 61.294 65.000 0.00 0.00 0.00 4.34
720 744 0.106217 GAGAGGAGAGGAGGAGGGTG 60.106 65.000 0.00 0.00 0.00 4.61
791 1033 2.092429 TGATCTGGGTGAAATGGTAGCC 60.092 50.000 0.00 0.00 35.09 3.93
792 1034 0.623723 TCTGGGTGAAATGGTAGCCC 59.376 55.000 0.00 0.00 39.73 5.19
836 1088 3.244112 CCTCTGTAAACACTTCGGGTCTT 60.244 47.826 0.00 0.00 0.00 3.01
837 1089 3.986277 TCTGTAAACACTTCGGGTCTTC 58.014 45.455 0.00 0.00 0.00 2.87
838 1090 3.064931 CTGTAAACACTTCGGGTCTTCC 58.935 50.000 0.00 0.00 0.00 3.46
863 1115 3.306294 GGCCAATATTTAAGCCCATGAGC 60.306 47.826 0.00 0.00 39.60 4.26
885 1137 1.609783 CCCGGGCTGATCTTTTCCT 59.390 57.895 8.08 0.00 0.00 3.36
895 1147 2.700897 TGATCTTTTCCTCCTCCGATCC 59.299 50.000 0.00 0.00 0.00 3.36
897 1149 1.008449 TCTTTTCCTCCTCCGATCCCT 59.992 52.381 0.00 0.00 0.00 4.20
898 1150 1.414550 CTTTTCCTCCTCCGATCCCTC 59.585 57.143 0.00 0.00 0.00 4.30
899 1151 0.637195 TTTCCTCCTCCGATCCCTCT 59.363 55.000 0.00 0.00 0.00 3.69
900 1152 0.186386 TTCCTCCTCCGATCCCTCTC 59.814 60.000 0.00 0.00 0.00 3.20
901 1153 0.699577 TCCTCCTCCGATCCCTCTCT 60.700 60.000 0.00 0.00 0.00 3.10
902 1154 0.251165 CCTCCTCCGATCCCTCTCTC 60.251 65.000 0.00 0.00 0.00 3.20
903 1155 0.771127 CTCCTCCGATCCCTCTCTCT 59.229 60.000 0.00 0.00 0.00 3.10
904 1156 0.768622 TCCTCCGATCCCTCTCTCTC 59.231 60.000 0.00 0.00 0.00 3.20
905 1157 0.771127 CCTCCGATCCCTCTCTCTCT 59.229 60.000 0.00 0.00 0.00 3.10
906 1158 1.271379 CCTCCGATCCCTCTCTCTCTC 60.271 61.905 0.00 0.00 0.00 3.20
907 1159 1.699634 CTCCGATCCCTCTCTCTCTCT 59.300 57.143 0.00 0.00 0.00 3.10
908 1160 1.419762 TCCGATCCCTCTCTCTCTCTG 59.580 57.143 0.00 0.00 0.00 3.35
909 1161 1.238439 CGATCCCTCTCTCTCTCTGC 58.762 60.000 0.00 0.00 0.00 4.26
910 1162 1.620822 GATCCCTCTCTCTCTCTGCC 58.379 60.000 0.00 0.00 0.00 4.85
911 1163 0.188342 ATCCCTCTCTCTCTCTGCCC 59.812 60.000 0.00 0.00 0.00 5.36
942 1441 1.911702 GACTTCAGTAGCCCCCACCC 61.912 65.000 0.00 0.00 0.00 4.61
978 1477 2.444140 CCCCGGTTCCTCGAGGAT 60.444 66.667 33.97 0.00 44.98 3.24
979 1478 1.152610 CCCCGGTTCCTCGAGGATA 60.153 63.158 33.97 21.26 44.98 2.59
994 1496 0.105039 GGATACTCCACGGAAGCAGG 59.895 60.000 0.00 0.00 36.28 4.85
995 1497 0.105039 GATACTCCACGGAAGCAGGG 59.895 60.000 0.00 0.00 0.00 4.45
997 1499 3.710722 CTCCACGGAAGCAGGGCT 61.711 66.667 0.00 0.00 42.56 5.19
1156 1658 2.747855 GACTCAGGCCGCCTTTGG 60.748 66.667 9.99 5.35 0.00 3.28
1260 1768 0.393944 AGATAGTCGAGGTCACCGCA 60.394 55.000 0.00 0.00 0.00 5.69
1297 1805 7.572910 GCTTCTTCAGGTTTTCTTCAGATTCTC 60.573 40.741 0.00 0.00 0.00 2.87
1299 1807 7.512992 TCTTCAGGTTTTCTTCAGATTCTCTT 58.487 34.615 0.00 0.00 0.00 2.85
1302 1810 7.282585 TCAGGTTTTCTTCAGATTCTCTTTCA 58.717 34.615 0.00 0.00 0.00 2.69
1310 1818 7.329499 TCTTCAGATTCTCTTTCATCTTGAGG 58.671 38.462 0.00 0.00 0.00 3.86
1325 1839 2.795231 TGAGGAAAGATGGCTTCAGG 57.205 50.000 3.03 0.00 31.82 3.86
1326 1840 1.988107 TGAGGAAAGATGGCTTCAGGT 59.012 47.619 3.03 0.00 31.82 4.00
1327 1841 2.376518 TGAGGAAAGATGGCTTCAGGTT 59.623 45.455 3.03 0.00 31.82 3.50
1328 1842 3.181429 TGAGGAAAGATGGCTTCAGGTTT 60.181 43.478 3.03 0.00 31.82 3.27
1329 1843 4.042809 TGAGGAAAGATGGCTTCAGGTTTA 59.957 41.667 3.03 0.00 31.82 2.01
1331 1845 3.696548 GGAAAGATGGCTTCAGGTTTAGG 59.303 47.826 3.03 0.00 31.82 2.69
1333 1847 1.064389 AGATGGCTTCAGGTTTAGGCC 60.064 52.381 0.00 0.00 42.73 5.19
1334 1848 1.002857 ATGGCTTCAGGTTTAGGCCT 58.997 50.000 11.78 11.78 42.84 5.19
1418 1932 2.821366 GACGAGGGGCAGCACATG 60.821 66.667 0.00 0.00 0.00 3.21
1472 1990 5.154932 GTGGTATATATGCAGTCAGACGAC 58.845 45.833 3.10 0.00 42.95 4.34
1496 2014 5.424757 TCTTTGTGTGTACTGTAGCAAGTT 58.575 37.500 0.00 0.00 0.00 2.66
1517 2035 7.524717 AGTTACTACTTCCAAATTGCAATGT 57.475 32.000 13.82 3.97 0.00 2.71
1549 2067 2.209758 TCATGGTGGGGTAATTAGGCA 58.790 47.619 0.00 0.00 0.00 4.75
1561 2079 5.945784 GGGTAATTAGGCATGATGCTGAATA 59.054 40.000 17.84 3.04 44.28 1.75
1562 2080 6.127897 GGGTAATTAGGCATGATGCTGAATAC 60.128 42.308 17.84 13.11 44.28 1.89
1729 2252 1.344953 ATATGGAGTTGCAGGCGGGA 61.345 55.000 0.00 0.00 0.00 5.14
1810 2337 8.218423 TGCCTTTCTGATCCCTATGATTTATA 57.782 34.615 0.00 0.00 32.41 0.98
1848 2379 6.254281 ACAGTTTGTATAAGATTGGTGTGC 57.746 37.500 0.00 0.00 0.00 4.57
1849 2380 6.003950 ACAGTTTGTATAAGATTGGTGTGCT 58.996 36.000 0.00 0.00 0.00 4.40
1850 2381 7.165485 ACAGTTTGTATAAGATTGGTGTGCTA 58.835 34.615 0.00 0.00 0.00 3.49
1851 2382 7.119262 ACAGTTTGTATAAGATTGGTGTGCTAC 59.881 37.037 0.00 0.00 0.00 3.58
1864 2397 3.089284 GTGTGCTACCTTTATGCCCTTT 58.911 45.455 0.00 0.00 0.00 3.11
1868 2401 5.130350 GTGCTACCTTTATGCCCTTTGATA 58.870 41.667 0.00 0.00 0.00 2.15
1870 2403 5.104109 TGCTACCTTTATGCCCTTTGATACT 60.104 40.000 0.00 0.00 0.00 2.12
1871 2404 5.470437 GCTACCTTTATGCCCTTTGATACTC 59.530 44.000 0.00 0.00 0.00 2.59
1873 2406 6.079712 ACCTTTATGCCCTTTGATACTCTT 57.920 37.500 0.00 0.00 0.00 2.85
1875 2408 6.122277 CCTTTATGCCCTTTGATACTCTTCA 58.878 40.000 0.00 0.00 0.00 3.02
1878 2411 7.572523 TTATGCCCTTTGATACTCTTCAATG 57.427 36.000 0.00 0.00 35.64 2.82
1879 2412 4.272489 TGCCCTTTGATACTCTTCAATGG 58.728 43.478 10.54 10.54 44.55 3.16
1880 2413 4.018506 TGCCCTTTGATACTCTTCAATGGA 60.019 41.667 16.40 0.64 46.35 3.41
1881 2414 5.136105 GCCCTTTGATACTCTTCAATGGAT 58.864 41.667 16.40 0.00 46.35 3.41
1882 2415 5.009410 GCCCTTTGATACTCTTCAATGGATG 59.991 44.000 16.40 6.09 46.35 3.51
1883 2416 6.359804 CCCTTTGATACTCTTCAATGGATGA 58.640 40.000 16.40 0.00 46.35 2.92
1884 2417 7.002879 CCCTTTGATACTCTTCAATGGATGAT 58.997 38.462 16.40 0.00 46.35 2.45
1887 2420 9.775854 CTTTGATACTCTTCAATGGATGATAGT 57.224 33.333 0.00 0.00 38.03 2.12
1954 2487 7.385778 ACTGTTTGTTTTACAGCTTAACTCA 57.614 32.000 0.00 0.00 45.38 3.41
1957 2490 6.151312 TGTTTGTTTTACAGCTTAACTCACCA 59.849 34.615 0.00 0.00 0.00 4.17
2020 2553 8.730680 AGCAATATGGTTCACTTGTAAGTTAAG 58.269 33.333 0.00 0.00 37.08 1.85
2067 2666 5.357257 ACTGTTATTATTGCTCGTAGTGGG 58.643 41.667 0.00 0.00 0.00 4.61
2082 2681 4.037565 CGTAGTGGGCATAGTTCTCATGTA 59.962 45.833 0.00 0.00 0.00 2.29
2083 2682 4.408182 AGTGGGCATAGTTCTCATGTAC 57.592 45.455 0.00 0.00 0.00 2.90
2103 2702 8.810427 CATGTACCATCTAATTTGTTTGAATGC 58.190 33.333 0.00 0.00 0.00 3.56
2196 2795 4.072131 TGCCAGTTGTTATCAAGGTCTTC 58.928 43.478 0.00 0.00 33.97 2.87
2202 2801 6.091441 CAGTTGTTATCAAGGTCTTCTACTGC 59.909 42.308 0.00 0.00 33.97 4.40
2203 2802 5.738619 TGTTATCAAGGTCTTCTACTGCA 57.261 39.130 0.00 0.00 0.00 4.41
2233 2832 7.421530 TGTTAACAGTTCTGTTCTATTCTGC 57.578 36.000 19.37 5.56 33.59 4.26
2288 2887 4.835927 GGGACCACTGACTATGCG 57.164 61.111 0.00 0.00 0.00 4.73
2381 2980 3.374745 CAACAATGCTCAAACGAAAGCT 58.625 40.909 0.00 0.00 39.31 3.74
2447 3046 4.160252 ACATCAGTTAAAATGGTCATGGCC 59.840 41.667 10.20 10.20 0.00 5.36
2489 3088 2.488937 TGCTGCTGTTCAACATGTATGG 59.511 45.455 0.00 0.00 0.00 2.74
2615 3214 0.679640 TGGGTGAAATGGATGGCGAC 60.680 55.000 0.00 0.00 0.00 5.19
2774 3373 5.487153 TTGCCATTATTGCATTGCATTTC 57.513 34.783 12.95 0.00 38.76 2.17
2951 3550 5.221342 GGAGATCCTTATATGGACTATGCGG 60.221 48.000 9.43 0.00 39.17 5.69
2953 3552 4.055710 TCCTTATATGGACTATGCGGGA 57.944 45.455 3.24 0.00 0.00 5.14
3095 3694 0.693049 ACTTGGGGTGGCTTCTAGTG 59.307 55.000 0.00 0.00 0.00 2.74
3114 3713 8.280258 TCTAGTGATTGATATCCCCATCTTTT 57.720 34.615 0.00 0.00 0.00 2.27
3131 3730 7.094592 CCCATCTTTTCCAAAGACTTAGAACTC 60.095 40.741 1.02 0.00 0.00 3.01
3263 3864 7.441157 TCTTAGTCCAGTTCACTTAATGTTGTG 59.559 37.037 0.00 0.00 35.68 3.33
3264 3865 5.437060 AGTCCAGTTCACTTAATGTTGTGT 58.563 37.500 0.00 0.00 35.82 3.72
3265 3866 5.527582 AGTCCAGTTCACTTAATGTTGTGTC 59.472 40.000 0.00 0.00 35.82 3.67
3323 3924 9.747898 AGGTTTTAATACTGTGGATGATTTGTA 57.252 29.630 0.00 0.00 0.00 2.41
3354 3955 4.991687 GGTAGTAAGCTGATTGGTGCTATC 59.008 45.833 0.00 0.00 38.75 2.08
3355 3956 4.760530 AGTAAGCTGATTGGTGCTATCA 57.239 40.909 0.00 0.00 38.75 2.15
3423 4049 8.635765 TGCTTATTATGAAGAAAACACTCCTT 57.364 30.769 0.00 0.00 0.00 3.36
3499 4126 4.387598 TCATTCATGGGTTTTTGCCAAAG 58.612 39.130 0.00 0.00 0.00 2.77
3527 4154 0.316204 ACTTTGCTGTTCTGCATGCC 59.684 50.000 16.68 0.00 42.96 4.40
3706 4411 7.961351 AGATGTTTAGGTGATATCTGAGAAGG 58.039 38.462 3.98 0.00 0.00 3.46
3707 4412 6.485830 TGTTTAGGTGATATCTGAGAAGGG 57.514 41.667 3.98 0.00 0.00 3.95
3708 4413 5.163301 TGTTTAGGTGATATCTGAGAAGGGC 60.163 44.000 3.98 0.00 0.00 5.19
3709 4414 3.342926 AGGTGATATCTGAGAAGGGCT 57.657 47.619 3.98 0.00 0.00 5.19
3710 4415 2.971330 AGGTGATATCTGAGAAGGGCTG 59.029 50.000 3.98 0.00 0.00 4.85
3711 4416 2.703007 GGTGATATCTGAGAAGGGCTGT 59.297 50.000 3.98 0.00 0.00 4.40
3715 4420 4.225942 TGATATCTGAGAAGGGCTGTTGTT 59.774 41.667 3.98 0.00 0.00 2.83
3754 4459 8.746922 ATAAATACTTACGAAAGTGAACGTCA 57.253 30.769 0.00 0.00 45.63 4.35
3822 4529 8.477419 AGGTTTGGTTCTCTAAATTGATTTCA 57.523 30.769 0.00 0.00 0.00 2.69
3824 4531 9.541143 GGTTTGGTTCTCTAAATTGATTTCAAA 57.459 29.630 0.00 0.00 39.55 2.69
3907 4631 7.584532 ACACTAGGTACAATAGTATCAGGTCT 58.415 38.462 9.05 0.00 33.63 3.85
3919 4643 4.582656 AGTATCAGGTCTCCAGAAATCTCG 59.417 45.833 0.00 0.00 0.00 4.04
3961 4685 8.306761 GGATTTATTCTTTTATCGCATTGGGAT 58.693 33.333 18.75 18.75 38.69 3.85
3980 4704 5.419788 TGGGATGTTCTGAATTCCTGAATTG 59.580 40.000 9.72 0.00 40.77 2.32
3981 4705 5.163478 GGGATGTTCTGAATTCCTGAATTGG 60.163 44.000 9.72 3.57 40.77 3.16
3982 4706 5.420104 GGATGTTCTGAATTCCTGAATTGGT 59.580 40.000 9.72 0.00 40.77 3.67
4015 4739 3.489180 AGTTGGATACTGACTCGTTCG 57.511 47.619 0.00 0.00 35.19 3.95
4102 4826 0.544357 ACATCCCAGAACGAGGACCA 60.544 55.000 0.00 0.00 34.20 4.02
4105 4829 1.358152 TCCCAGAACGAGGACCAAAT 58.642 50.000 0.00 0.00 0.00 2.32
4127 4854 4.594970 TGGTTGAACACAAGGAAGAAGAA 58.405 39.130 0.00 0.00 0.00 2.52
4153 4880 5.401531 TGTTCTAGTAAAGATGAAGCGGT 57.598 39.130 0.00 0.00 33.05 5.68
4158 4885 3.600388 AGTAAAGATGAAGCGGTTCAGG 58.400 45.455 30.90 0.00 45.96 3.86
4231 4958 8.573035 TCTTGACTAATGTTCCCAATGTTAAAC 58.427 33.333 0.00 0.00 0.00 2.01
4288 5027 4.103469 TGAGAGTTACCCCTTGTGCTTTTA 59.897 41.667 0.00 0.00 0.00 1.52
4308 5047 8.476925 GCTTTTATACAGGAAAACTCAAAAACG 58.523 33.333 0.00 0.00 0.00 3.60
4415 5154 6.725364 AGTATGACTTCTGAATGTTCCCATT 58.275 36.000 0.00 0.00 43.97 3.16
4429 5168 4.104738 TGTTCCCATTCTCTCTTGGTCTTT 59.895 41.667 0.00 0.00 0.00 2.52
4431 5170 5.324832 TCCCATTCTCTCTTGGTCTTTTT 57.675 39.130 0.00 0.00 0.00 1.94
4435 5174 6.150140 CCCATTCTCTCTTGGTCTTTTTACTG 59.850 42.308 0.00 0.00 0.00 2.74
4476 5215 4.344679 TGTTTCTTCCATGGCAAACATTCT 59.655 37.500 22.65 0.00 37.84 2.40
4477 5216 4.789012 TTCTTCCATGGCAAACATTCTC 57.211 40.909 6.96 0.00 37.84 2.87
4478 5217 4.038271 TCTTCCATGGCAAACATTCTCT 57.962 40.909 6.96 0.00 37.84 3.10
4479 5218 4.410099 TCTTCCATGGCAAACATTCTCTT 58.590 39.130 6.96 0.00 37.84 2.85
4480 5219 4.834496 TCTTCCATGGCAAACATTCTCTTT 59.166 37.500 6.96 0.00 37.84 2.52
4481 5220 5.305128 TCTTCCATGGCAAACATTCTCTTTT 59.695 36.000 6.96 0.00 37.84 2.27
4482 5221 5.549742 TCCATGGCAAACATTCTCTTTTT 57.450 34.783 6.96 0.00 37.84 1.94
4515 5254 7.253422 AGGCAAACATTCTTCTGATAATTTCG 58.747 34.615 0.00 0.00 0.00 3.46
4540 5281 7.480810 GTGTAGAAAAGAAAAACATCACCAGT 58.519 34.615 0.00 0.00 0.00 4.00
4541 5282 7.973944 GTGTAGAAAAGAAAAACATCACCAGTT 59.026 33.333 0.00 0.00 0.00 3.16
4550 5291 1.956477 ACATCACCAGTTTCCTTGCAC 59.044 47.619 0.00 0.00 0.00 4.57
4553 5294 1.152963 ACCAGTTTCCTTGCACGCT 60.153 52.632 0.00 0.00 0.00 5.07
4576 5317 5.812665 GCATGTCTGCTTTTTCTTTGTAC 57.187 39.130 0.00 0.00 45.32 2.90
4577 5318 5.280945 GCATGTCTGCTTTTTCTTTGTACA 58.719 37.500 0.00 0.00 45.32 2.90
4578 5319 5.748152 GCATGTCTGCTTTTTCTTTGTACAA 59.252 36.000 3.59 3.59 45.32 2.41
4580 5321 7.568134 GCATGTCTGCTTTTTCTTTGTACAATG 60.568 37.037 9.56 12.04 45.32 2.82
4582 5323 7.319646 TGTCTGCTTTTTCTTTGTACAATGTT 58.680 30.769 18.04 0.00 0.00 2.71
4583 5324 7.275341 TGTCTGCTTTTTCTTTGTACAATGTTG 59.725 33.333 18.04 6.70 0.00 3.33
4584 5325 7.487829 GTCTGCTTTTTCTTTGTACAATGTTGA 59.512 33.333 18.04 8.59 0.00 3.18
4585 5326 8.031864 TCTGCTTTTTCTTTGTACAATGTTGAA 58.968 29.630 18.04 12.97 0.00 2.69
4587 5328 9.160496 TGCTTTTTCTTTGTACAATGTTGAATT 57.840 25.926 18.04 0.00 0.00 2.17
4588 5329 9.424659 GCTTTTTCTTTGTACAATGTTGAATTG 57.575 29.630 18.04 10.34 35.29 2.32
4595 5494 8.450578 TTTGTACAATGTTGAATTGAGAGAGT 57.549 30.769 9.56 0.00 33.51 3.24
4596 5495 9.554395 TTTGTACAATGTTGAATTGAGAGAGTA 57.446 29.630 9.56 0.00 33.51 2.59
4597 5496 9.554395 TTGTACAATGTTGAATTGAGAGAGTAA 57.446 29.630 3.59 0.00 33.51 2.24
4630 5529 2.231215 ACACTGATAATGCTCGCCTC 57.769 50.000 0.00 0.00 0.00 4.70
4793 5692 2.940971 GCCCTGTGCATATGAACACTCA 60.941 50.000 12.84 0.00 40.77 3.41
4795 5694 3.949754 CCCTGTGCATATGAACACTCATT 59.050 43.478 12.84 0.00 39.36 2.57
4796 5695 4.201980 CCCTGTGCATATGAACACTCATTG 60.202 45.833 12.84 2.14 39.36 2.82
4802 5701 5.297527 TGCATATGAACACTCATTGATGTCC 59.702 40.000 6.97 0.00 39.36 4.02
4812 5711 1.741706 CATTGATGTCCAGCACACTCC 59.258 52.381 0.00 0.00 38.04 3.85
4832 5735 3.055819 TCCATTGAGAGGTTTCGAAGAGG 60.056 47.826 0.00 0.00 38.43 3.69
4833 5736 2.457366 TTGAGAGGTTTCGAAGAGGC 57.543 50.000 0.00 0.00 38.43 4.70
4836 5739 1.374252 GAGGTTTCGAAGAGGCGCA 60.374 57.895 10.83 0.00 38.43 6.09
4907 5810 2.123342 CGATGATTCCTCTCGCTTGAC 58.877 52.381 0.00 0.00 0.00 3.18
4917 5820 1.754803 TCTCGCTTGACCGGTATCATT 59.245 47.619 7.34 0.00 0.00 2.57
4919 5822 1.478916 TCGCTTGACCGGTATCATTGA 59.521 47.619 7.34 0.00 0.00 2.57
4962 5865 3.562973 ACTGACAGTTTGCTCTTGTGATG 59.437 43.478 1.07 0.00 0.00 3.07
5015 5921 2.700371 ACGATGATGTCTGCTAATGGGA 59.300 45.455 0.00 0.00 0.00 4.37
5017 5923 3.672808 GATGATGTCTGCTAATGGGAGG 58.327 50.000 0.00 0.00 33.98 4.30
5018 5924 1.141657 TGATGTCTGCTAATGGGAGGC 59.858 52.381 0.00 0.00 38.52 4.70
5091 5997 5.105595 CCTCAGTTGTGATCAGTGAGTATGA 60.106 44.000 17.03 7.29 36.02 2.15
5103 6016 9.317936 GATCAGTGAGTATGAACATTGTGATTA 57.682 33.333 0.00 0.00 0.00 1.75
5104 6017 8.707938 TCAGTGAGTATGAACATTGTGATTAG 57.292 34.615 0.00 0.00 0.00 1.73
5120 6033 5.124297 TGTGATTAGGTTGTGATCAATGCTG 59.876 40.000 0.00 0.00 35.92 4.41
5122 6035 5.355071 TGATTAGGTTGTGATCAATGCTGTC 59.645 40.000 0.00 0.00 35.92 3.51
5270 6193 7.790782 ACAATCCTAATATTTTTGTGGGTGT 57.209 32.000 0.00 0.00 0.00 4.16
5445 6613 8.517878 AGATATCAATCCAAAGGAAATTATGCG 58.482 33.333 5.32 0.00 34.34 4.73
5446 6614 5.261209 TCAATCCAAAGGAAATTATGCGG 57.739 39.130 0.00 0.00 34.34 5.69
5447 6615 4.952957 TCAATCCAAAGGAAATTATGCGGA 59.047 37.500 0.00 0.00 34.34 5.54
5448 6616 5.420421 TCAATCCAAAGGAAATTATGCGGAA 59.580 36.000 0.00 0.00 34.34 4.30
5449 6617 4.981806 TCCAAAGGAAATTATGCGGAAG 57.018 40.909 0.00 0.00 0.00 3.46
5468 6636 7.754069 CGGAAGCTTTGCAAAATTATTATGA 57.246 32.000 13.84 0.00 0.00 2.15
5469 6637 8.183830 CGGAAGCTTTGCAAAATTATTATGAA 57.816 30.769 13.84 0.00 0.00 2.57
5470 6638 8.323140 CGGAAGCTTTGCAAAATTATTATGAAG 58.677 33.333 13.84 0.00 0.00 3.02
5471 6639 8.118607 GGAAGCTTTGCAAAATTATTATGAAGC 58.881 33.333 13.84 8.21 37.75 3.86
5472 6640 8.782339 AAGCTTTGCAAAATTATTATGAAGCT 57.218 26.923 13.84 10.42 46.39 3.74
5473 6641 9.874205 AAGCTTTGCAAAATTATTATGAAGCTA 57.126 25.926 13.84 0.00 44.43 3.32
5474 6642 9.305925 AGCTTTGCAAAATTATTATGAAGCTAC 57.694 29.630 13.84 0.00 43.68 3.58
5475 6643 8.261908 GCTTTGCAAAATTATTATGAAGCTACG 58.738 33.333 13.84 0.00 35.39 3.51
5476 6644 7.678194 TTGCAAAATTATTATGAAGCTACGC 57.322 32.000 0.00 0.00 0.00 4.42
5477 6645 5.906838 TGCAAAATTATTATGAAGCTACGCG 59.093 36.000 3.53 3.53 0.00 6.01
5478 6646 6.133392 GCAAAATTATTATGAAGCTACGCGA 58.867 36.000 15.93 0.00 0.00 5.87
5479 6647 6.085068 GCAAAATTATTATGAAGCTACGCGAC 59.915 38.462 15.93 0.83 0.00 5.19
5480 6648 7.345192 CAAAATTATTATGAAGCTACGCGACT 58.655 34.615 15.93 3.77 0.00 4.18
5481 6649 8.484799 CAAAATTATTATGAAGCTACGCGACTA 58.515 33.333 15.93 0.00 0.00 2.59
5482 6650 7.798486 AATTATTATGAAGCTACGCGACTAG 57.202 36.000 15.93 6.20 0.00 2.57
5483 6651 6.549912 TTATTATGAAGCTACGCGACTAGA 57.450 37.500 15.93 0.00 0.00 2.43
5484 6652 4.888038 TTATGAAGCTACGCGACTAGAA 57.112 40.909 15.93 0.00 0.00 2.10
5485 6653 3.777465 ATGAAGCTACGCGACTAGAAA 57.223 42.857 15.93 0.00 0.00 2.52
5486 6654 3.777465 TGAAGCTACGCGACTAGAAAT 57.223 42.857 15.93 0.00 0.00 2.17
5487 6655 3.692576 TGAAGCTACGCGACTAGAAATC 58.307 45.455 15.93 5.17 0.00 2.17
5488 6656 2.386501 AGCTACGCGACTAGAAATCG 57.613 50.000 15.93 0.00 42.55 3.34
5489 6657 1.938577 AGCTACGCGACTAGAAATCGA 59.061 47.619 15.93 0.00 42.25 3.59
5490 6658 2.548904 AGCTACGCGACTAGAAATCGAT 59.451 45.455 15.93 0.00 42.25 3.59
5491 6659 2.903707 GCTACGCGACTAGAAATCGATC 59.096 50.000 15.93 0.00 42.25 3.69
5492 6660 2.402640 ACGCGACTAGAAATCGATCC 57.597 50.000 15.93 0.00 42.25 3.36
5493 6661 1.001597 ACGCGACTAGAAATCGATCCC 60.002 52.381 15.93 0.00 42.25 3.85
5494 6662 1.267261 CGCGACTAGAAATCGATCCCT 59.733 52.381 0.00 1.32 42.25 4.20
5495 6663 2.483106 CGCGACTAGAAATCGATCCCTA 59.517 50.000 0.00 2.54 42.25 3.53
5496 6664 3.127203 CGCGACTAGAAATCGATCCCTAT 59.873 47.826 0.00 0.00 42.25 2.57
5497 6665 4.416620 GCGACTAGAAATCGATCCCTATG 58.583 47.826 0.00 1.28 42.25 2.23
5498 6666 4.675671 GCGACTAGAAATCGATCCCTATGG 60.676 50.000 0.00 0.00 42.25 2.74
5499 6667 4.675671 CGACTAGAAATCGATCCCTATGGC 60.676 50.000 0.00 0.02 42.25 4.40
5500 6668 4.421131 ACTAGAAATCGATCCCTATGGCT 58.579 43.478 0.00 0.00 0.00 4.75
5501 6669 3.971245 AGAAATCGATCCCTATGGCTC 57.029 47.619 0.00 0.00 0.00 4.70
5502 6670 3.242867 AGAAATCGATCCCTATGGCTCA 58.757 45.455 0.00 0.00 0.00 4.26
5503 6671 3.648067 AGAAATCGATCCCTATGGCTCAA 59.352 43.478 0.00 0.00 0.00 3.02
5504 6672 3.692257 AATCGATCCCTATGGCTCAAG 57.308 47.619 0.00 0.00 0.00 3.02
5525 6693 4.051922 AGTGTTCTTGACTTCGTAGCAAG 58.948 43.478 15.13 15.13 37.11 4.01
5626 6831 6.945938 TCTACTAGAGCAAATCTGGAGTAC 57.054 41.667 0.00 0.00 38.78 2.73
5643 6848 8.264347 TCTGGAGTACAAATATTTGCATCTACA 58.736 33.333 24.82 22.53 41.79 2.74
5682 6940 3.626028 AATCTTGCAAGAAACGGTGTC 57.374 42.857 31.55 0.00 38.77 3.67
5689 6947 5.446143 TGCAAGAAACGGTGTCATTTATT 57.554 34.783 0.37 0.00 0.00 1.40
5718 6976 0.107654 GCTCGGTTGCTCCTGGTTAT 60.108 55.000 0.00 0.00 0.00 1.89
5719 6977 1.941325 CTCGGTTGCTCCTGGTTATC 58.059 55.000 0.00 0.00 0.00 1.75
5720 6978 0.174845 TCGGTTGCTCCTGGTTATCG 59.825 55.000 0.00 0.00 0.00 2.92
5721 6979 1.429148 CGGTTGCTCCTGGTTATCGC 61.429 60.000 0.00 0.00 0.00 4.58
5722 6980 1.095807 GGTTGCTCCTGGTTATCGCC 61.096 60.000 0.00 0.00 0.00 5.54
5723 6981 0.392461 GTTGCTCCTGGTTATCGCCA 60.392 55.000 0.00 0.00 36.97 5.69
5724 6982 0.392461 TTGCTCCTGGTTATCGCCAC 60.392 55.000 0.00 0.00 34.36 5.01
5725 6983 1.264749 TGCTCCTGGTTATCGCCACT 61.265 55.000 0.00 0.00 34.36 4.00
5726 6984 0.750850 GCTCCTGGTTATCGCCACTA 59.249 55.000 0.00 0.00 34.36 2.74
5727 6985 1.344763 GCTCCTGGTTATCGCCACTAT 59.655 52.381 0.00 0.00 34.36 2.12
5728 6986 2.224305 GCTCCTGGTTATCGCCACTATT 60.224 50.000 0.00 0.00 34.36 1.73
5729 6987 3.006537 GCTCCTGGTTATCGCCACTATTA 59.993 47.826 0.00 0.00 34.36 0.98
5730 6988 4.810790 CTCCTGGTTATCGCCACTATTAG 58.189 47.826 0.00 0.00 34.36 1.73
5731 6989 4.476297 TCCTGGTTATCGCCACTATTAGA 58.524 43.478 0.00 0.00 34.36 2.10
5732 6990 4.523173 TCCTGGTTATCGCCACTATTAGAG 59.477 45.833 0.00 0.00 34.36 2.43
5733 6991 4.523173 CCTGGTTATCGCCACTATTAGAGA 59.477 45.833 0.00 0.00 34.36 3.10
5734 6992 5.186021 CCTGGTTATCGCCACTATTAGAGAT 59.814 44.000 0.00 0.56 34.36 2.75
5735 6993 6.377429 CCTGGTTATCGCCACTATTAGAGATA 59.623 42.308 0.00 0.00 34.36 1.98
5736 6994 7.068839 CCTGGTTATCGCCACTATTAGAGATAT 59.931 40.741 0.00 0.00 34.36 1.63
5737 6995 9.121658 CTGGTTATCGCCACTATTAGAGATATA 57.878 37.037 0.00 0.00 34.36 0.86
5738 6996 9.470399 TGGTTATCGCCACTATTAGAGATATAA 57.530 33.333 0.00 0.00 32.81 0.98
5745 7003 8.812329 CGCCACTATTAGAGATATAAATCTTGC 58.188 37.037 0.00 0.00 42.73 4.01
5746 7004 9.658799 GCCACTATTAGAGATATAAATCTTGCA 57.341 33.333 0.00 0.00 42.73 4.08
5753 7011 7.706281 AGAGATATAAATCTTGCAAGACACG 57.294 36.000 30.66 3.54 42.73 4.49
5754 7012 6.703607 AGAGATATAAATCTTGCAAGACACGG 59.296 38.462 30.66 2.72 42.73 4.94
5755 7013 6.349300 AGATATAAATCTTGCAAGACACGGT 58.651 36.000 30.66 17.43 39.55 4.83
5756 7014 4.685169 ATAAATCTTGCAAGACACGGTG 57.315 40.909 30.66 6.58 37.98 4.94
5757 7015 1.967319 AATCTTGCAAGACACGGTGT 58.033 45.000 30.66 14.66 37.98 4.16
5758 7016 2.831685 ATCTTGCAAGACACGGTGTA 57.168 45.000 30.66 6.22 37.98 2.90
5759 7017 2.605837 TCTTGCAAGACACGGTGTAA 57.394 45.000 25.16 3.51 0.00 2.41
5760 7018 3.120321 TCTTGCAAGACACGGTGTAAT 57.880 42.857 25.16 3.05 0.00 1.89
5761 7019 3.472652 TCTTGCAAGACACGGTGTAATT 58.527 40.909 25.16 9.42 0.00 1.40
5762 7020 3.880490 TCTTGCAAGACACGGTGTAATTT 59.120 39.130 25.16 6.55 0.00 1.82
5763 7021 5.057819 TCTTGCAAGACACGGTGTAATTTA 58.942 37.500 25.16 0.00 0.00 1.40
5764 7022 5.703592 TCTTGCAAGACACGGTGTAATTTAT 59.296 36.000 25.16 0.00 0.00 1.40
5765 7023 5.539582 TGCAAGACACGGTGTAATTTATC 57.460 39.130 14.74 0.00 0.00 1.75
5766 7024 4.998033 TGCAAGACACGGTGTAATTTATCA 59.002 37.500 14.74 7.20 0.00 2.15
5767 7025 5.470437 TGCAAGACACGGTGTAATTTATCAA 59.530 36.000 14.74 0.00 0.00 2.57
5768 7026 6.150307 TGCAAGACACGGTGTAATTTATCAAT 59.850 34.615 14.74 0.00 0.00 2.57
5769 7027 6.468956 GCAAGACACGGTGTAATTTATCAATG 59.531 38.462 14.74 4.89 0.00 2.82
5770 7028 7.625395 GCAAGACACGGTGTAATTTATCAATGA 60.625 37.037 14.74 0.00 0.00 2.57
5771 7029 7.303634 AGACACGGTGTAATTTATCAATGAC 57.696 36.000 14.74 0.00 0.00 3.06
5772 7030 7.103641 AGACACGGTGTAATTTATCAATGACT 58.896 34.615 14.74 0.00 0.00 3.41
5773 7031 8.255206 AGACACGGTGTAATTTATCAATGACTA 58.745 33.333 14.74 0.00 0.00 2.59
5774 7032 8.420374 ACACGGTGTAATTTATCAATGACTAG 57.580 34.615 12.96 0.00 0.00 2.57
5775 7033 8.255206 ACACGGTGTAATTTATCAATGACTAGA 58.745 33.333 12.96 0.00 0.00 2.43
5776 7034 8.540492 CACGGTGTAATTTATCAATGACTAGAC 58.460 37.037 0.00 0.00 0.00 2.59
5777 7035 8.475639 ACGGTGTAATTTATCAATGACTAGACT 58.524 33.333 0.00 0.00 0.00 3.24
5778 7036 8.969267 CGGTGTAATTTATCAATGACTAGACTC 58.031 37.037 0.00 0.00 0.00 3.36
5779 7037 8.969267 GGTGTAATTTATCAATGACTAGACTCG 58.031 37.037 0.00 0.00 0.00 4.18
5780 7038 8.969267 GTGTAATTTATCAATGACTAGACTCGG 58.031 37.037 0.00 0.00 0.00 4.63
5781 7039 8.692710 TGTAATTTATCAATGACTAGACTCGGT 58.307 33.333 0.00 0.00 0.00 4.69
5782 7040 9.530633 GTAATTTATCAATGACTAGACTCGGTT 57.469 33.333 0.00 0.00 0.00 4.44
5783 7041 8.425577 AATTTATCAATGACTAGACTCGGTTG 57.574 34.615 0.00 0.00 0.00 3.77
5784 7042 3.232213 TCAATGACTAGACTCGGTTGC 57.768 47.619 0.00 0.00 0.00 4.17
5785 7043 2.094182 TCAATGACTAGACTCGGTTGCC 60.094 50.000 0.00 0.00 0.00 4.52
5786 7044 0.824759 ATGACTAGACTCGGTTGCCC 59.175 55.000 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.076024 ACGGAGGGAGTACTGGTTACA 59.924 52.381 0.00 0.00 32.41 2.41
13 14 1.747924 GACGGAGGGAGTACTGGTTAC 59.252 57.143 0.00 0.00 0.00 2.50
18 19 1.000019 TGGGACGGAGGGAGTACTG 60.000 63.158 0.00 0.00 0.00 2.74
73 74 3.217743 GGCTACTCCCTCCGTCCG 61.218 72.222 0.00 0.00 0.00 4.79
77 78 1.051812 AATCATGGCTACTCCCTCCG 58.948 55.000 0.00 0.00 0.00 4.63
89 90 7.930865 TGTTAAAACCTTGGAGAAAAATCATGG 59.069 33.333 0.00 0.00 33.55 3.66
219 220 2.617250 TCAAACATGCATCTTCACGC 57.383 45.000 0.00 0.00 0.00 5.34
222 223 6.814644 GGAATTTGATCAAACATGCATCTTCA 59.185 34.615 22.71 0.00 32.51 3.02
236 237 9.699410 AGAGTTGGTTAATATGGAATTTGATCA 57.301 29.630 0.00 0.00 0.00 2.92
241 242 7.400052 AGGCAAGAGTTGGTTAATATGGAATTT 59.600 33.333 0.00 0.00 0.00 1.82
257 258 5.102953 TGATATTGTAGCAGGCAAGAGTT 57.897 39.130 0.00 0.00 0.00 3.01
265 266 4.211374 GCGGTTACTTGATATTGTAGCAGG 59.789 45.833 0.00 0.00 0.00 4.85
286 287 3.310227 AGTCAGTCTTGATACTCGTAGCG 59.690 47.826 0.00 0.00 35.39 4.26
291 292 5.449314 CCACCTTAGTCAGTCTTGATACTCG 60.449 48.000 0.00 0.00 35.39 4.18
320 326 2.744741 GCCTTCTCAAAGTCTTGCTACC 59.255 50.000 0.00 0.00 32.14 3.18
428 448 7.041916 TGCTGTAAAATTTGAGCCATTTTCTTG 60.042 33.333 12.26 0.00 35.78 3.02
457 477 2.709475 GCATGAATCCGCGGTGTC 59.291 61.111 27.15 22.67 0.00 3.67
463 483 2.546321 CTACGCGCATGAATCCGC 59.454 61.111 5.73 0.25 46.17 5.54
493 513 2.485122 GCGCCAGATTTGGTTCCG 59.515 61.111 3.90 0.40 46.80 4.30
511 531 1.365699 TTCTACGCGCCAAGATTTCC 58.634 50.000 5.73 0.00 0.00 3.13
517 537 0.442699 GTTCCTTTCTACGCGCCAAG 59.557 55.000 5.73 0.82 0.00 3.61
518 538 0.952010 GGTTCCTTTCTACGCGCCAA 60.952 55.000 5.73 0.00 0.00 4.52
519 539 1.375013 GGTTCCTTTCTACGCGCCA 60.375 57.895 5.73 0.00 0.00 5.69
520 540 2.450345 CGGTTCCTTTCTACGCGCC 61.450 63.158 5.73 0.00 0.00 6.53
521 541 1.010419 TTCGGTTCCTTTCTACGCGC 61.010 55.000 5.73 0.00 0.00 6.86
522 542 1.125566 GTTTCGGTTCCTTTCTACGCG 59.874 52.381 3.53 3.53 0.00 6.01
526 546 3.052036 CGTTCGTTTCGGTTCCTTTCTA 58.948 45.455 0.00 0.00 0.00 2.10
550 570 2.806009 CCCTAGCTCTGCCTGGCTC 61.806 68.421 21.03 6.48 39.65 4.70
579 599 1.115326 GGTTGCCTGAGCCCTTTTGT 61.115 55.000 0.00 0.00 38.69 2.83
704 728 2.641746 CCCACCCTCCTCCTCTCCT 61.642 68.421 0.00 0.00 0.00 3.69
705 729 2.041405 CCCACCCTCCTCCTCTCC 60.041 72.222 0.00 0.00 0.00 3.71
707 731 2.062448 AAACCCCACCCTCCTCCTCT 62.062 60.000 0.00 0.00 0.00 3.69
709 733 1.541620 GAAACCCCACCCTCCTCCT 60.542 63.158 0.00 0.00 0.00 3.69
711 735 1.685820 CAGAAACCCCACCCTCCTC 59.314 63.158 0.00 0.00 0.00 3.71
712 736 2.539081 GCAGAAACCCCACCCTCCT 61.539 63.158 0.00 0.00 0.00 3.69
765 789 3.267812 ACCATTTCACCCAGATCATGTCT 59.732 43.478 0.00 0.00 37.80 3.41
769 1010 3.435601 GGCTACCATTTCACCCAGATCAT 60.436 47.826 0.00 0.00 0.00 2.45
836 1088 2.488347 GGGCTTAAATATTGGCCGAGGA 60.488 50.000 16.14 0.00 44.91 3.71
837 1089 1.886542 GGGCTTAAATATTGGCCGAGG 59.113 52.381 16.14 0.00 44.91 4.63
870 1122 1.133945 GGAGGAGGAAAAGATCAGCCC 60.134 57.143 0.00 0.00 0.00 5.19
874 1126 2.700897 GGATCGGAGGAGGAAAAGATCA 59.299 50.000 0.00 0.00 36.99 2.92
885 1137 0.768622 GAGAGAGAGGGATCGGAGGA 59.231 60.000 0.00 0.00 0.00 3.71
895 1147 1.827789 CGGGGCAGAGAGAGAGAGG 60.828 68.421 0.00 0.00 0.00 3.69
897 1149 1.077357 GACGGGGCAGAGAGAGAGA 60.077 63.158 0.00 0.00 0.00 3.10
898 1150 1.077068 AGACGGGGCAGAGAGAGAG 60.077 63.158 0.00 0.00 0.00 3.20
899 1151 1.077357 GAGACGGGGCAGAGAGAGA 60.077 63.158 0.00 0.00 0.00 3.10
900 1152 2.124693 GGAGACGGGGCAGAGAGAG 61.125 68.421 0.00 0.00 0.00 3.20
901 1153 2.043852 GGAGACGGGGCAGAGAGA 60.044 66.667 0.00 0.00 0.00 3.10
978 1477 2.656069 GCCCTGCTTCCGTGGAGTA 61.656 63.158 0.00 0.00 0.00 2.59
979 1478 4.021925 GCCCTGCTTCCGTGGAGT 62.022 66.667 0.00 0.00 0.00 3.85
1059 1561 2.431260 TTCGTTACCGCTGCGTCC 60.431 61.111 21.59 4.48 0.00 4.79
1112 1614 0.598680 GCCGGGAGATCGATCAAGTG 60.599 60.000 26.47 13.28 0.00 3.16
1185 1693 1.452108 CATGTCGGCCTTCTTCCCC 60.452 63.158 0.00 0.00 0.00 4.81
1260 1768 0.106708 TGAAGAAGCAGTTGCCGTCT 59.893 50.000 0.00 1.50 43.38 4.18
1310 1818 3.129462 GCCTAAACCTGAAGCCATCTTTC 59.871 47.826 0.00 0.00 31.48 2.62
1323 1837 0.842467 AGGACAGCAGGCCTAAACCT 60.842 55.000 3.98 7.65 42.30 3.50
1325 1839 1.541588 CAAAGGACAGCAGGCCTAAAC 59.458 52.381 2.79 0.00 33.20 2.01
1326 1840 1.423541 TCAAAGGACAGCAGGCCTAAA 59.576 47.619 2.79 0.00 33.20 1.85
1327 1841 1.003580 CTCAAAGGACAGCAGGCCTAA 59.996 52.381 2.79 0.00 33.20 2.69
1328 1842 0.615331 CTCAAAGGACAGCAGGCCTA 59.385 55.000 2.79 0.00 33.20 3.93
1329 1843 1.377994 CTCAAAGGACAGCAGGCCT 59.622 57.895 0.00 0.00 35.61 5.19
1331 1845 2.185004 TAACTCAAAGGACAGCAGGC 57.815 50.000 0.00 0.00 0.00 4.85
1333 1847 6.344500 AGTCATATAACTCAAAGGACAGCAG 58.656 40.000 0.00 0.00 0.00 4.24
1334 1848 6.299805 AGTCATATAACTCAAAGGACAGCA 57.700 37.500 0.00 0.00 0.00 4.41
1335 1849 7.493367 AGTAGTCATATAACTCAAAGGACAGC 58.507 38.462 0.00 0.00 0.00 4.40
1336 1850 8.687242 TGAGTAGTCATATAACTCAAAGGACAG 58.313 37.037 0.00 0.00 44.89 3.51
1337 1851 8.589701 TGAGTAGTCATATAACTCAAAGGACA 57.410 34.615 0.00 0.00 44.89 4.02
1418 1932 1.553704 ACAACCATCTCCCGGTACTTC 59.446 52.381 0.00 0.00 34.99 3.01
1472 1990 5.050490 ACTTGCTACAGTACACACAAAGAG 58.950 41.667 0.00 0.00 0.00 2.85
1473 1991 5.018539 ACTTGCTACAGTACACACAAAGA 57.981 39.130 0.00 0.00 0.00 2.52
1474 1992 5.734855 AACTTGCTACAGTACACACAAAG 57.265 39.130 0.00 0.00 0.00 2.77
1475 1993 6.342906 AGTAACTTGCTACAGTACACACAAA 58.657 36.000 0.00 0.00 0.00 2.83
1478 1996 6.675987 AGTAGTAACTTGCTACAGTACACAC 58.324 40.000 16.57 0.00 40.76 3.82
1496 2014 6.714810 ACTGACATTGCAATTTGGAAGTAGTA 59.285 34.615 9.83 0.00 29.36 1.82
1517 2035 3.053693 CCCCACCATGAAATCCTAACTGA 60.054 47.826 0.00 0.00 0.00 3.41
1549 2067 3.613030 TGTGCACAGTATTCAGCATCAT 58.387 40.909 17.42 0.00 39.43 2.45
1561 2079 0.036010 GTCATAGCCCTGTGCACAGT 60.036 55.000 37.55 25.40 44.83 3.55
1562 2080 0.036105 TGTCATAGCCCTGTGCACAG 60.036 55.000 35.15 35.15 44.83 3.66
1613 2136 0.896940 AACTCCTCGCGGTGTTCCTA 60.897 55.000 6.13 0.00 41.80 2.94
1654 2177 0.885879 AGTAGTCATCGAACGGCACA 59.114 50.000 0.00 0.00 0.00 4.57
1729 2252 3.071023 TGTTTCTTCCCGTGACAAGAGAT 59.929 43.478 0.00 0.00 30.32 2.75
1826 2357 6.500684 AGCACACCAATCTTATACAAACTG 57.499 37.500 0.00 0.00 0.00 3.16
1843 2374 2.420058 AGGGCATAAAGGTAGCACAC 57.580 50.000 0.00 0.00 33.12 3.82
1844 2375 3.088532 CAAAGGGCATAAAGGTAGCACA 58.911 45.455 0.00 0.00 33.12 4.57
1845 2376 3.352648 TCAAAGGGCATAAAGGTAGCAC 58.647 45.455 0.00 0.00 0.00 4.40
1846 2377 3.730215 TCAAAGGGCATAAAGGTAGCA 57.270 42.857 0.00 0.00 0.00 3.49
1847 2378 5.377478 AGTATCAAAGGGCATAAAGGTAGC 58.623 41.667 0.00 0.00 0.00 3.58
1848 2379 6.831976 AGAGTATCAAAGGGCATAAAGGTAG 58.168 40.000 0.00 0.00 37.82 3.18
1849 2380 6.824958 AGAGTATCAAAGGGCATAAAGGTA 57.175 37.500 0.00 0.00 37.82 3.08
1850 2381 5.717119 AGAGTATCAAAGGGCATAAAGGT 57.283 39.130 0.00 0.00 37.82 3.50
1851 2382 6.122277 TGAAGAGTATCAAAGGGCATAAAGG 58.878 40.000 0.00 0.00 37.82 3.11
1860 2393 9.217278 CTATCATCCATTGAAGAGTATCAAAGG 57.783 37.037 5.23 5.23 45.23 3.11
1919 2452 9.825972 CTGTAAAACAAACAGTAATGATACAGG 57.174 33.333 0.00 0.00 39.61 4.00
1957 2490 5.824097 AGAAAAGTTGTTTATGTACCACCGT 59.176 36.000 0.00 0.00 0.00 4.83
2082 2681 7.230849 TCTGCATTCAAACAAATTAGATGGT 57.769 32.000 0.00 0.00 0.00 3.55
2083 2682 8.195436 AGATCTGCATTCAAACAAATTAGATGG 58.805 33.333 0.00 0.00 0.00 3.51
2096 2695 5.467735 CCGTGATGATAAGATCTGCATTCAA 59.532 40.000 0.00 0.00 0.00 2.69
2102 2701 3.982475 TCACCGTGATGATAAGATCTGC 58.018 45.455 0.00 0.00 0.00 4.26
2103 2702 3.986572 GCTCACCGTGATGATAAGATCTG 59.013 47.826 0.62 0.00 0.00 2.90
2196 2795 8.745837 CAGAACTGTTAACAATTTTTGCAGTAG 58.254 33.333 10.03 0.00 35.06 2.57
2288 2887 8.248117 ACATAAATCGACCACAGTAAGTAAAC 57.752 34.615 0.00 0.00 0.00 2.01
2325 2924 5.068234 ACATTGGAATCTGTCTGCAATTG 57.932 39.130 0.00 0.00 0.00 2.32
2615 3214 6.865205 TCATGTACTCAATAGCAGAATCGATG 59.135 38.462 0.00 0.00 0.00 3.84
2616 3215 6.986250 TCATGTACTCAATAGCAGAATCGAT 58.014 36.000 0.00 0.00 0.00 3.59
2774 3373 3.243301 ACAATCACAGAAAGCAAGTGCAG 60.243 43.478 6.00 0.00 45.16 4.41
2951 3550 5.254115 AGTAGTTCAAGGCTTACCATTTCC 58.746 41.667 0.00 0.00 39.06 3.13
2953 3552 5.940470 CAGAGTAGTTCAAGGCTTACCATTT 59.060 40.000 0.00 0.00 39.06 2.32
3095 3694 7.506938 TCTTTGGAAAAGATGGGGATATCAATC 59.493 37.037 4.83 4.82 0.00 2.67
3170 3769 5.471456 CAGGACTTCACTCTAAAAACTGCAT 59.529 40.000 0.00 0.00 0.00 3.96
3246 3847 4.881273 TGCTGACACAACATTAAGTGAACT 59.119 37.500 0.00 0.00 39.03 3.01
3263 3864 5.412594 TCAGGTGTGAATAAGAAATGCTGAC 59.587 40.000 0.00 0.00 0.00 3.51
3264 3865 5.559770 TCAGGTGTGAATAAGAAATGCTGA 58.440 37.500 0.00 0.00 0.00 4.26
3265 3866 5.885230 TCAGGTGTGAATAAGAAATGCTG 57.115 39.130 0.00 0.00 0.00 4.41
3323 3924 6.896307 ACCAATCAGCTTACTACCTAGTACTT 59.104 38.462 0.00 0.00 38.43 2.24
3326 3927 5.068723 GCACCAATCAGCTTACTACCTAGTA 59.931 44.000 0.00 0.00 37.73 1.82
3354 3955 4.633126 CACACCCAGAACATCTAGATTGTG 59.367 45.833 12.92 12.92 0.00 3.33
3355 3956 4.287067 ACACACCCAGAACATCTAGATTGT 59.713 41.667 1.33 2.35 0.00 2.71
3433 4060 8.465999 TCTTTTGACAGTATTGTGTTCACAATT 58.534 29.630 28.02 15.34 40.42 2.32
3499 4126 4.271291 GCAGAACAGCAAAGTAGCCTATAC 59.729 45.833 0.00 0.00 34.23 1.47
3665 4300 7.227512 CCTAAACATCTATTACCTTGCCAGAAG 59.772 40.741 0.00 0.00 0.00 2.85
3703 4408 2.572290 GTCTACACAACAACAGCCCTT 58.428 47.619 0.00 0.00 0.00 3.95
3705 4410 1.202770 AGGTCTACACAACAACAGCCC 60.203 52.381 0.00 0.00 0.00 5.19
3706 4411 2.256117 AGGTCTACACAACAACAGCC 57.744 50.000 0.00 0.00 0.00 4.85
3707 4412 3.202906 TCAAGGTCTACACAACAACAGC 58.797 45.455 0.00 0.00 0.00 4.40
3708 4413 7.490962 TTATTCAAGGTCTACACAACAACAG 57.509 36.000 0.00 0.00 0.00 3.16
3709 4414 7.867305 TTTATTCAAGGTCTACACAACAACA 57.133 32.000 0.00 0.00 0.00 3.33
3710 4415 9.821662 GTATTTATTCAAGGTCTACACAACAAC 57.178 33.333 0.00 0.00 0.00 3.32
3711 4416 9.787435 AGTATTTATTCAAGGTCTACACAACAA 57.213 29.630 0.00 0.00 0.00 2.83
3715 4420 9.577110 CGTAAGTATTTATTCAAGGTCTACACA 57.423 33.333 0.00 0.00 0.00 3.72
3754 4459 9.425577 GTAACTCAGATAGAAGCTAAAAGTGTT 57.574 33.333 0.00 0.00 0.00 3.32
3894 4618 6.432783 CGAGATTTCTGGAGACCTGATACTAT 59.567 42.308 0.00 0.00 31.78 2.12
3899 4623 2.102252 GCGAGATTTCTGGAGACCTGAT 59.898 50.000 0.00 0.00 31.78 2.90
3903 4627 2.208431 CATGCGAGATTTCTGGAGACC 58.792 52.381 0.00 0.00 0.00 3.85
3907 4631 3.031013 TCCTACATGCGAGATTTCTGGA 58.969 45.455 0.00 0.00 0.00 3.86
3919 4643 9.289782 AGAATAAATCCTACAATTCCTACATGC 57.710 33.333 0.00 0.00 0.00 4.06
3961 4685 7.831691 TTAACCAATTCAGGAATTCAGAACA 57.168 32.000 7.93 0.00 38.84 3.18
3980 4704 6.884836 AGTATCCAACTGTTCCTGAATTAACC 59.115 38.462 0.00 0.00 36.93 2.85
3981 4705 7.923414 AGTATCCAACTGTTCCTGAATTAAC 57.077 36.000 0.00 0.00 36.93 2.01
4015 4739 6.318648 TCATCCAGGAAATATGCACAGTAAAC 59.681 38.462 0.00 0.00 0.00 2.01
4102 4826 5.656416 TCTTCTTCCTTGTGTTCAACCATTT 59.344 36.000 0.00 0.00 0.00 2.32
4105 4829 4.229304 TCTTCTTCCTTGTGTTCAACCA 57.771 40.909 0.00 0.00 0.00 3.67
4112 4836 5.946377 AGAACAACTTTCTTCTTCCTTGTGT 59.054 36.000 0.00 0.00 0.00 3.72
4127 4854 6.369065 CCGCTTCATCTTTACTAGAACAACTT 59.631 38.462 0.00 0.00 36.22 2.66
4153 4880 5.569227 GCATGTGGATTTTTGGATTCCTGAA 60.569 40.000 3.95 0.00 0.00 3.02
4158 4885 6.866480 TCTTAGCATGTGGATTTTTGGATTC 58.134 36.000 0.00 0.00 0.00 2.52
4199 4926 6.126863 TGGGAACATTAGTCAAGAGATGTT 57.873 37.500 0.66 0.66 43.29 2.71
4231 4958 2.486472 AGTGGAAGAATGTGAGGCAG 57.514 50.000 0.00 0.00 0.00 4.85
4270 5004 5.124936 CCTGTATAAAAGCACAAGGGGTAAC 59.875 44.000 0.00 0.00 0.00 2.50
4288 5027 6.544564 TCCTTCGTTTTTGAGTTTTCCTGTAT 59.455 34.615 0.00 0.00 0.00 2.29
4308 5047 2.235898 AGATCCACAAGAGCACTCCTTC 59.764 50.000 0.00 0.00 31.44 3.46
4415 5154 5.552870 AGCAGTAAAAAGACCAAGAGAGA 57.447 39.130 0.00 0.00 0.00 3.10
4481 5220 9.295825 TCAGAAGAATGTTTGCCTATCTAAAAA 57.704 29.630 0.00 0.00 0.00 1.94
4482 5221 8.862325 TCAGAAGAATGTTTGCCTATCTAAAA 57.138 30.769 0.00 0.00 0.00 1.52
4486 5225 9.638176 AATTATCAGAAGAATGTTTGCCTATCT 57.362 29.630 0.00 0.00 0.00 1.98
4489 5228 8.397906 CGAAATTATCAGAAGAATGTTTGCCTA 58.602 33.333 0.00 0.00 0.00 3.93
4490 5229 7.094205 ACGAAATTATCAGAAGAATGTTTGCCT 60.094 33.333 0.00 0.00 0.00 4.75
4491 5230 7.008628 CACGAAATTATCAGAAGAATGTTTGCC 59.991 37.037 0.00 0.00 0.00 4.52
4492 5231 7.538678 ACACGAAATTATCAGAAGAATGTTTGC 59.461 33.333 0.00 0.00 0.00 3.68
4493 5232 8.955061 ACACGAAATTATCAGAAGAATGTTTG 57.045 30.769 0.00 0.00 0.00 2.93
4495 5234 9.653287 TCTACACGAAATTATCAGAAGAATGTT 57.347 29.630 0.00 0.00 0.00 2.71
4496 5235 9.653287 TTCTACACGAAATTATCAGAAGAATGT 57.347 29.630 0.00 0.00 0.00 2.71
4500 5239 9.923143 TCTTTTCTACACGAAATTATCAGAAGA 57.077 29.630 0.00 0.00 41.04 2.87
4515 5254 7.480810 ACTGGTGATGTTTTTCTTTTCTACAC 58.519 34.615 0.00 0.00 0.00 2.90
4525 5264 4.507756 GCAAGGAAACTGGTGATGTTTTTC 59.492 41.667 0.00 0.00 42.68 2.29
4535 5276 1.152963 AGCGTGCAAGGAAACTGGT 60.153 52.632 0.79 0.00 42.68 4.00
4556 5297 7.491682 ACATTGTACAAAGAAAAAGCAGACAT 58.508 30.769 17.18 0.00 0.00 3.06
4566 5307 9.734620 CTCTCAATTCAACATTGTACAAAGAAA 57.265 29.630 17.18 8.65 0.00 2.52
4568 5309 8.675705 TCTCTCAATTCAACATTGTACAAAGA 57.324 30.769 17.18 8.20 0.00 2.52
4571 5312 9.554395 TTACTCTCTCAATTCAACATTGTACAA 57.446 29.630 11.41 11.41 0.00 2.41
4600 5499 9.988350 CGAGCATTATCAGTGTTTTTATACTTT 57.012 29.630 0.00 0.00 0.00 2.66
4603 5502 6.851330 GGCGAGCATTATCAGTGTTTTTATAC 59.149 38.462 0.00 0.00 0.00 1.47
4604 5503 6.765989 AGGCGAGCATTATCAGTGTTTTTATA 59.234 34.615 0.00 0.00 0.00 0.98
4606 5505 4.941263 AGGCGAGCATTATCAGTGTTTTTA 59.059 37.500 0.00 0.00 0.00 1.52
4607 5506 3.758554 AGGCGAGCATTATCAGTGTTTTT 59.241 39.130 0.00 0.00 0.00 1.94
4609 5508 2.939103 GAGGCGAGCATTATCAGTGTTT 59.061 45.455 0.00 0.00 0.00 2.83
4612 5511 2.133553 CAGAGGCGAGCATTATCAGTG 58.866 52.381 0.00 0.00 0.00 3.66
4793 5692 1.352017 TGGAGTGTGCTGGACATCAAT 59.648 47.619 5.02 0.00 36.78 2.57
4795 5694 0.986527 ATGGAGTGTGCTGGACATCA 59.013 50.000 5.02 5.46 36.78 3.07
4796 5695 1.741706 CAATGGAGTGTGCTGGACATC 59.258 52.381 5.02 4.48 36.78 3.06
4802 5701 1.002888 ACCTCTCAATGGAGTGTGCTG 59.997 52.381 0.00 0.00 42.05 4.41
4812 5711 2.675348 GCCTCTTCGAAACCTCTCAATG 59.325 50.000 0.00 0.00 0.00 2.82
4877 5780 1.029947 GGAATCATCGCAACCCCGTT 61.030 55.000 0.00 0.00 0.00 4.44
4904 5807 1.107945 TCGCTCAATGATACCGGTCA 58.892 50.000 12.40 3.76 0.00 4.02
4907 5810 1.195448 GCATTCGCTCAATGATACCGG 59.805 52.381 0.00 0.00 44.40 5.28
4917 5820 1.378911 AATGGCTGGCATTCGCTCA 60.379 52.632 22.09 0.00 38.60 4.26
4919 5822 3.072486 GCAATGGCTGGCATTCGCT 62.072 57.895 27.39 10.78 36.09 4.93
5015 5921 0.748005 GTACCCATGTGAATGCGCCT 60.748 55.000 4.18 0.00 0.00 5.52
5017 5923 1.024271 ATGTACCCATGTGAATGCGC 58.976 50.000 0.00 0.00 0.00 6.09
5018 5924 6.741992 ATATAATGTACCCATGTGAATGCG 57.258 37.500 0.00 0.00 0.00 4.73
5091 5997 7.523293 TTGATCACAACCTAATCACAATGTT 57.477 32.000 0.00 0.00 0.00 2.71
5103 6016 2.040813 AGGACAGCATTGATCACAACCT 59.959 45.455 0.00 0.00 38.90 3.50
5104 6017 2.163010 CAGGACAGCATTGATCACAACC 59.837 50.000 0.00 0.00 38.90 3.77
5122 6035 0.807667 CCTCTTTCGTCCGCATCAGG 60.808 60.000 0.00 0.00 0.00 3.86
5267 6190 9.683069 AGAAATGTCAGAATATTTGTTGAACAC 57.317 29.630 0.00 0.00 0.00 3.32
5421 6589 7.451255 TCCGCATAATTTCCTTTGGATTGATAT 59.549 33.333 0.00 0.00 0.00 1.63
5423 6591 5.598005 TCCGCATAATTTCCTTTGGATTGAT 59.402 36.000 0.00 0.00 0.00 2.57
5425 6593 5.261209 TCCGCATAATTTCCTTTGGATTG 57.739 39.130 0.00 0.00 0.00 2.67
5426 6594 5.682212 GCTTCCGCATAATTTCCTTTGGATT 60.682 40.000 0.00 0.00 35.78 3.01
5427 6595 4.202151 GCTTCCGCATAATTTCCTTTGGAT 60.202 41.667 0.00 0.00 35.78 3.41
5429 6597 3.131046 AGCTTCCGCATAATTTCCTTTGG 59.869 43.478 0.00 0.00 39.10 3.28
5430 6598 4.376340 AGCTTCCGCATAATTTCCTTTG 57.624 40.909 0.00 0.00 39.10 2.77
5431 6599 5.170748 CAAAGCTTCCGCATAATTTCCTTT 58.829 37.500 0.00 0.00 39.10 3.11
5432 6600 4.747810 CAAAGCTTCCGCATAATTTCCTT 58.252 39.130 0.00 0.00 39.10 3.36
5433 6601 3.429410 GCAAAGCTTCCGCATAATTTCCT 60.429 43.478 14.24 0.00 39.10 3.36
5434 6602 2.860136 GCAAAGCTTCCGCATAATTTCC 59.140 45.455 14.24 0.00 39.10 3.13
5437 6605 3.591196 TTGCAAAGCTTCCGCATAATT 57.409 38.095 20.48 0.00 39.10 1.40
5438 6606 3.591196 TTTGCAAAGCTTCCGCATAAT 57.409 38.095 20.48 0.00 39.10 1.28
5439 6607 3.377346 TTTTGCAAAGCTTCCGCATAA 57.623 38.095 20.48 18.63 39.10 1.90
5440 6608 3.591196 ATTTTGCAAAGCTTCCGCATA 57.409 38.095 20.48 14.65 39.10 3.14
5441 6609 2.460757 ATTTTGCAAAGCTTCCGCAT 57.539 40.000 20.48 6.90 39.10 4.73
5442 6610 2.237393 AATTTTGCAAAGCTTCCGCA 57.763 40.000 17.08 17.08 39.10 5.69
5443 6611 4.926860 AATAATTTTGCAAAGCTTCCGC 57.073 36.364 12.41 12.66 0.00 5.54
5444 6612 7.754069 TCATAATAATTTTGCAAAGCTTCCG 57.246 32.000 12.41 0.00 0.00 4.30
5445 6613 8.118607 GCTTCATAATAATTTTGCAAAGCTTCC 58.881 33.333 12.41 0.00 35.06 3.46
5446 6614 8.876790 AGCTTCATAATAATTTTGCAAAGCTTC 58.123 29.630 12.41 0.00 43.02 3.86
5447 6615 8.782339 AGCTTCATAATAATTTTGCAAAGCTT 57.218 26.923 12.41 12.22 43.02 3.74
5448 6616 9.305925 GTAGCTTCATAATAATTTTGCAAAGCT 57.694 29.630 12.41 14.36 46.15 3.74
5449 6617 8.261908 CGTAGCTTCATAATAATTTTGCAAAGC 58.738 33.333 12.41 7.56 37.46 3.51
5471 6639 3.480894 GGATCGATTTCTAGTCGCGTAG 58.519 50.000 5.77 0.95 38.88 3.51
5472 6640 2.225019 GGGATCGATTTCTAGTCGCGTA 59.775 50.000 5.77 0.00 38.88 4.42
5473 6641 1.001597 GGGATCGATTTCTAGTCGCGT 60.002 52.381 5.77 0.00 38.88 6.01
5474 6642 1.267261 AGGGATCGATTTCTAGTCGCG 59.733 52.381 0.00 0.00 38.88 5.87
5475 6643 4.416620 CATAGGGATCGATTTCTAGTCGC 58.583 47.826 0.00 0.00 38.88 5.19
5476 6644 4.675671 GCCATAGGGATCGATTTCTAGTCG 60.676 50.000 0.00 0.00 37.05 4.18
5477 6645 4.464597 AGCCATAGGGATCGATTTCTAGTC 59.535 45.833 0.00 0.00 35.59 2.59
5478 6646 4.421131 AGCCATAGGGATCGATTTCTAGT 58.579 43.478 0.00 0.00 35.59 2.57
5479 6647 5.004922 GAGCCATAGGGATCGATTTCTAG 57.995 47.826 0.00 0.00 40.28 2.43
5481 6649 3.971245 GAGCCATAGGGATCGATTTCT 57.029 47.619 0.00 2.98 40.28 2.52
5489 6657 3.118531 AGAACACTTGAGCCATAGGGAT 58.881 45.455 0.00 0.00 35.59 3.85
5490 6658 2.551270 AGAACACTTGAGCCATAGGGA 58.449 47.619 0.00 0.00 35.59 4.20
5491 6659 3.012518 CAAGAACACTTGAGCCATAGGG 58.987 50.000 4.23 0.00 42.26 3.53
5492 6660 3.686726 GTCAAGAACACTTGAGCCATAGG 59.313 47.826 12.02 0.00 46.70 2.57
5493 6661 4.573900 AGTCAAGAACACTTGAGCCATAG 58.426 43.478 12.02 0.00 46.70 2.23
5494 6662 4.623932 AGTCAAGAACACTTGAGCCATA 57.376 40.909 12.02 0.00 46.70 2.74
5495 6663 3.498774 AGTCAAGAACACTTGAGCCAT 57.501 42.857 12.02 0.00 46.70 4.40
5496 6664 3.206150 GAAGTCAAGAACACTTGAGCCA 58.794 45.455 12.02 0.00 46.70 4.75
5497 6665 2.221981 CGAAGTCAAGAACACTTGAGCC 59.778 50.000 12.02 3.45 46.70 4.70
5498 6666 2.866762 ACGAAGTCAAGAACACTTGAGC 59.133 45.455 12.02 8.11 46.70 4.26
5499 6667 4.149046 GCTACGAAGTCAAGAACACTTGAG 59.851 45.833 12.02 4.68 46.70 3.02
5500 6668 4.049186 GCTACGAAGTCAAGAACACTTGA 58.951 43.478 8.32 8.32 44.86 3.02
5501 6669 3.802139 TGCTACGAAGTCAAGAACACTTG 59.198 43.478 0.00 0.00 43.93 3.16
5502 6670 4.054780 TGCTACGAAGTCAAGAACACTT 57.945 40.909 0.00 0.00 43.93 3.16
5503 6671 3.728076 TGCTACGAAGTCAAGAACACT 57.272 42.857 0.00 0.00 43.93 3.55
5504 6672 3.363084 GCTTGCTACGAAGTCAAGAACAC 60.363 47.826 12.77 0.00 43.93 3.32
5520 6688 6.840780 AATGTAAGTTAATGGAAGCTTGCT 57.159 33.333 19.34 2.06 0.00 3.91
5525 6693 6.036470 GGAGCAAATGTAAGTTAATGGAAGC 58.964 40.000 0.00 0.00 0.00 3.86
5587 6758 9.535878 GCTCTAGTAGATGTAAAAATAGCACTT 57.464 33.333 0.00 0.00 0.00 3.16
5590 6761 9.884636 TTTGCTCTAGTAGATGTAAAAATAGCA 57.115 29.630 0.00 0.01 33.62 3.49
5595 6766 9.383519 CCAGATTTGCTCTAGTAGATGTAAAAA 57.616 33.333 0.00 0.00 31.13 1.94
5602 6807 7.063593 TGTACTCCAGATTTGCTCTAGTAGAT 58.936 38.462 0.00 0.00 29.57 1.98
5653 6858 7.770897 ACCGTTTCTTGCAAGATTTATATCTCT 59.229 33.333 28.89 2.83 40.26 3.10
5654 6859 7.852945 CACCGTTTCTTGCAAGATTTATATCTC 59.147 37.037 28.89 10.78 40.26 2.75
5657 6862 7.120579 TGACACCGTTTCTTGCAAGATTTATAT 59.879 33.333 28.89 12.68 34.49 0.86
5658 6863 6.428465 TGACACCGTTTCTTGCAAGATTTATA 59.572 34.615 28.89 11.78 34.49 0.98
5659 6864 5.240623 TGACACCGTTTCTTGCAAGATTTAT 59.759 36.000 28.89 11.74 34.49 1.40
5661 6866 3.380004 TGACACCGTTTCTTGCAAGATTT 59.620 39.130 28.89 7.65 34.49 2.17
5664 6869 2.031258 TGACACCGTTTCTTGCAAGA 57.969 45.000 25.16 25.16 0.00 3.02
5665 6870 3.354089 AATGACACCGTTTCTTGCAAG 57.646 42.857 20.81 20.81 0.00 4.01
5666 6871 3.791973 AAATGACACCGTTTCTTGCAA 57.208 38.095 0.00 0.00 0.00 4.08
5667 6872 5.446143 AATAAATGACACCGTTTCTTGCA 57.554 34.783 0.00 0.00 33.80 4.08
5682 6940 6.377327 ACCGAGCCAAGTCATTAATAAATG 57.623 37.500 0.00 0.00 43.32 2.32
5689 6947 1.003118 AGCAACCGAGCCAAGTCATTA 59.997 47.619 0.00 0.00 34.23 1.90
5719 6977 8.812329 GCAAGATTTATATCTCTAATAGTGGCG 58.188 37.037 0.00 0.00 40.26 5.69
5720 6978 9.658799 TGCAAGATTTATATCTCTAATAGTGGC 57.341 33.333 0.00 0.00 40.26 5.01
5727 6985 9.249457 CGTGTCTTGCAAGATTTATATCTCTAA 57.751 33.333 30.65 1.39 40.26 2.10
5728 6986 7.867909 CCGTGTCTTGCAAGATTTATATCTCTA 59.132 37.037 30.65 1.85 40.26 2.43
5729 6987 6.703607 CCGTGTCTTGCAAGATTTATATCTCT 59.296 38.462 30.65 0.00 40.26 3.10
5730 6988 6.480320 ACCGTGTCTTGCAAGATTTATATCTC 59.520 38.462 30.65 15.37 40.26 2.75
5731 6989 6.258727 CACCGTGTCTTGCAAGATTTATATCT 59.741 38.462 30.65 7.55 43.01 1.98
5732 6990 6.037172 ACACCGTGTCTTGCAAGATTTATATC 59.963 38.462 30.65 16.75 37.39 1.63
5733 6991 5.880332 ACACCGTGTCTTGCAAGATTTATAT 59.120 36.000 30.65 13.24 37.39 0.86
5734 6992 5.242434 ACACCGTGTCTTGCAAGATTTATA 58.758 37.500 30.65 13.05 37.39 0.98
5735 6993 4.072131 ACACCGTGTCTTGCAAGATTTAT 58.928 39.130 30.65 13.73 37.39 1.40
5736 6994 3.472652 ACACCGTGTCTTGCAAGATTTA 58.527 40.909 30.65 17.70 37.39 1.40
5737 6995 2.297701 ACACCGTGTCTTGCAAGATTT 58.702 42.857 30.65 11.62 37.39 2.17
5738 6996 1.967319 ACACCGTGTCTTGCAAGATT 58.033 45.000 30.65 11.29 37.39 2.40
5739 6997 2.831685 TACACCGTGTCTTGCAAGAT 57.168 45.000 30.65 16.00 37.39 2.40
5740 6998 2.605837 TTACACCGTGTCTTGCAAGA 57.394 45.000 25.16 25.16 0.00 3.02
5741 6999 3.896648 AATTACACCGTGTCTTGCAAG 57.103 42.857 20.81 20.81 0.00 4.01
5742 7000 5.470437 TGATAAATTACACCGTGTCTTGCAA 59.530 36.000 7.63 0.00 0.00 4.08
5743 7001 4.998033 TGATAAATTACACCGTGTCTTGCA 59.002 37.500 7.63 1.98 0.00 4.08
5744 7002 5.539582 TGATAAATTACACCGTGTCTTGC 57.460 39.130 7.63 0.00 0.00 4.01
5745 7003 7.692291 GTCATTGATAAATTACACCGTGTCTTG 59.308 37.037 7.63 0.00 0.00 3.02
5746 7004 7.606456 AGTCATTGATAAATTACACCGTGTCTT 59.394 33.333 7.63 3.38 0.00 3.01
5747 7005 7.103641 AGTCATTGATAAATTACACCGTGTCT 58.896 34.615 7.63 0.00 0.00 3.41
5748 7006 7.303634 AGTCATTGATAAATTACACCGTGTC 57.696 36.000 7.63 0.00 0.00 3.67
5749 7007 8.255206 TCTAGTCATTGATAAATTACACCGTGT 58.745 33.333 9.58 9.58 0.00 4.49
5750 7008 8.540492 GTCTAGTCATTGATAAATTACACCGTG 58.460 37.037 0.00 0.00 0.00 4.94
5751 7009 8.475639 AGTCTAGTCATTGATAAATTACACCGT 58.524 33.333 0.00 0.00 0.00 4.83
5752 7010 8.873215 AGTCTAGTCATTGATAAATTACACCG 57.127 34.615 0.00 0.00 0.00 4.94
5753 7011 8.969267 CGAGTCTAGTCATTGATAAATTACACC 58.031 37.037 0.00 0.00 0.00 4.16
5754 7012 8.969267 CCGAGTCTAGTCATTGATAAATTACAC 58.031 37.037 0.00 0.00 0.00 2.90
5755 7013 8.692710 ACCGAGTCTAGTCATTGATAAATTACA 58.307 33.333 0.00 0.00 0.00 2.41
5756 7014 9.530633 AACCGAGTCTAGTCATTGATAAATTAC 57.469 33.333 0.00 0.00 0.00 1.89
5757 7015 9.529325 CAACCGAGTCTAGTCATTGATAAATTA 57.471 33.333 0.00 0.00 0.00 1.40
5758 7016 7.011482 GCAACCGAGTCTAGTCATTGATAAATT 59.989 37.037 0.00 0.00 0.00 1.82
5759 7017 6.480320 GCAACCGAGTCTAGTCATTGATAAAT 59.520 38.462 0.00 0.00 0.00 1.40
5760 7018 5.810587 GCAACCGAGTCTAGTCATTGATAAA 59.189 40.000 0.00 0.00 0.00 1.40
5761 7019 5.348986 GCAACCGAGTCTAGTCATTGATAA 58.651 41.667 0.00 0.00 0.00 1.75
5762 7020 4.202121 GGCAACCGAGTCTAGTCATTGATA 60.202 45.833 0.00 0.00 0.00 2.15
5763 7021 3.430929 GGCAACCGAGTCTAGTCATTGAT 60.431 47.826 0.00 0.00 0.00 2.57
5764 7022 2.094182 GGCAACCGAGTCTAGTCATTGA 60.094 50.000 0.00 0.00 0.00 2.57
5765 7023 2.271800 GGCAACCGAGTCTAGTCATTG 58.728 52.381 0.00 0.00 0.00 2.82
5766 7024 2.674796 GGCAACCGAGTCTAGTCATT 57.325 50.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.