Multiple sequence alignment - TraesCS2A01G545400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G545400 chr2A 100.000 5047 0 0 1 5047 754353422 754348376 0.000000e+00 9321.0
1 TraesCS2A01G545400 chr2A 97.241 1305 13 3 1889 3173 712551076 712549775 0.000000e+00 2189.0
2 TraesCS2A01G545400 chr2A 89.109 505 40 7 3610 4103 754340505 754340005 9.290000e-172 614.0
3 TraesCS2A01G545400 chr2A 88.350 206 19 5 1889 2091 187959382 187959585 5.050000e-60 243.0
4 TraesCS2A01G545400 chr2A 91.489 94 5 2 4578 4670 602799697 602799606 5.300000e-25 126.0
5 TraesCS2A01G545400 chr5B 97.395 1305 12 2 1889 3173 671200132 671198830 0.000000e+00 2202.0
6 TraesCS2A01G545400 chr5B 95.559 1306 14 12 1888 3173 641337275 641335994 0.000000e+00 2050.0
7 TraesCS2A01G545400 chr5B 86.715 956 87 18 2230 3172 224573741 224572813 0.000000e+00 1026.0
8 TraesCS2A01G545400 chr5B 87.239 431 46 5 3626 4049 35530553 35530981 2.730000e-132 483.0
9 TraesCS2A01G545400 chr5B 80.159 126 24 1 3050 3174 660216616 660216741 5.380000e-15 93.5
10 TraesCS2A01G545400 chr7B 97.171 1308 14 3 1886 3173 667207123 667205819 0.000000e+00 2189.0
11 TraesCS2A01G545400 chr7B 97.165 1305 14 3 1889 3172 667199591 667200893 0.000000e+00 2183.0
12 TraesCS2A01G545400 chr7B 88.787 544 54 1 887 1430 84023126 84023662 0.000000e+00 660.0
13 TraesCS2A01G545400 chr7B 80.109 367 41 16 2822 3173 538420380 538420031 1.400000e-60 244.0
14 TraesCS2A01G545400 chr7B 88.325 197 18 5 1898 2091 538427357 538427163 1.090000e-56 231.0
15 TraesCS2A01G545400 chr7B 91.667 96 7 1 4672 4766 639796189 639796284 1.140000e-26 132.0
16 TraesCS2A01G545400 chr1B 89.639 1303 81 22 1889 3173 479075629 479074363 0.000000e+00 1609.0
17 TraesCS2A01G545400 chr1B 95.652 46 2 0 1309 1354 51601811 51601856 1.950000e-09 75.0
18 TraesCS2A01G545400 chr3A 87.312 1332 81 34 1886 3173 401403360 401404647 0.000000e+00 1443.0
19 TraesCS2A01G545400 chr3A 95.455 44 2 0 2799 2842 401403824 401403867 2.520000e-08 71.3
20 TraesCS2A01G545400 chr2B 91.667 960 51 13 3649 4597 765061899 765060958 0.000000e+00 1303.0
21 TraesCS2A01G545400 chr2B 84.547 783 77 24 544 1312 765063551 765062799 0.000000e+00 736.0
22 TraesCS2A01G545400 chr2B 92.537 402 24 5 3175 3575 765062325 765061929 5.670000e-159 571.0
23 TraesCS2A01G545400 chr2B 85.020 494 42 19 1 484 765064329 765063858 1.640000e-129 473.0
24 TraesCS2A01G545400 chr2B 97.338 263 5 1 2911 3173 139109650 139109390 3.580000e-121 446.0
25 TraesCS2A01G545400 chr2B 88.545 323 21 4 1570 1884 765062633 765062319 1.330000e-100 377.0
26 TraesCS2A01G545400 chr2B 89.597 298 14 13 4764 5045 765060960 765060664 3.710000e-96 363.0
27 TraesCS2A01G545400 chr2B 96.970 33 1 0 1350 1382 139367287 139367319 7.060000e-04 56.5
28 TraesCS2A01G545400 chr2B 100.000 29 0 0 1348 1376 560432868 560432840 3.000000e-03 54.7
29 TraesCS2A01G545400 chr2B 100.000 28 0 0 1350 1377 377535724 377535697 9.000000e-03 52.8
30 TraesCS2A01G545400 chr7A 96.405 612 2 1 1889 2480 22624607 22625218 0.000000e+00 990.0
31 TraesCS2A01G545400 chr7A 86.256 844 72 18 2096 2924 722523414 722522600 0.000000e+00 876.0
32 TraesCS2A01G545400 chr7A 89.041 219 11 4 2967 3173 722522600 722522383 5.010000e-65 259.0
33 TraesCS2A01G545400 chr7A 87.864 206 20 5 1889 2091 26169730 26169527 2.350000e-58 237.0
34 TraesCS2A01G545400 chr2D 91.641 646 40 8 3610 4244 622915878 622915236 0.000000e+00 881.0
35 TraesCS2A01G545400 chr2D 88.925 614 37 15 1 607 622918258 622917669 0.000000e+00 728.0
36 TraesCS2A01G545400 chr2D 92.611 406 22 5 3175 3575 622916280 622915878 1.220000e-160 577.0
37 TraesCS2A01G545400 chr2D 82.857 455 45 14 633 1071 622917415 622916978 1.330000e-100 377.0
38 TraesCS2A01G545400 chr2D 88.644 317 20 4 1576 1884 622916582 622916274 6.170000e-99 372.0
39 TraesCS2A01G545400 chr2D 82.609 115 7 6 4764 4865 622914956 622914842 6.960000e-14 89.8
40 TraesCS2A01G545400 chr6B 80.837 1028 115 49 2180 3174 559407745 559406767 0.000000e+00 732.0
41 TraesCS2A01G545400 chr6B 88.614 202 18 5 1893 2091 559408078 559407879 1.820000e-59 241.0
42 TraesCS2A01G545400 chr6B 91.398 93 6 2 4579 4670 569019204 569019113 5.300000e-25 126.0
43 TraesCS2A01G545400 chr6B 92.222 90 5 1 4581 4670 694120130 694120217 5.300000e-25 126.0
44 TraesCS2A01G545400 chr6B 100.000 28 0 0 1350 1377 4288922 4288895 9.000000e-03 52.8
45 TraesCS2A01G545400 chr4A 82.075 742 86 24 2096 2813 105026312 105027030 1.560000e-164 590.0
46 TraesCS2A01G545400 chr4A 79.667 300 44 11 2878 3173 105027061 105027347 3.080000e-47 200.0
47 TraesCS2A01G545400 chr4A 91.057 123 7 4 3050 3170 183997526 183997406 4.040000e-36 163.0
48 TraesCS2A01G545400 chr4A 93.548 93 4 2 4676 4767 428159884 428159975 2.450000e-28 137.0
49 TraesCS2A01G545400 chr4A 92.308 91 5 2 4581 4670 571363149 571363060 1.470000e-25 128.0
50 TraesCS2A01G545400 chr4A 92.308 91 5 2 4581 4670 588588218 588588129 1.470000e-25 128.0
51 TraesCS2A01G545400 chr4A 91.489 94 7 1 4674 4766 658397583 658397676 1.470000e-25 128.0
52 TraesCS2A01G545400 chr4A 85.714 63 7 2 1308 1370 703756171 703756111 1.170000e-06 65.8
53 TraesCS2A01G545400 chr5D 86.946 429 47 5 3628 4049 41363401 41363827 1.640000e-129 473.0
54 TraesCS2A01G545400 chr5D 92.000 100 6 2 4667 4765 532592446 532592544 6.810000e-29 139.0
55 TraesCS2A01G545400 chr5D 100.000 28 0 0 1352 1379 268282651 268282678 9.000000e-03 52.8
56 TraesCS2A01G545400 chr5A 87.970 399 40 4 3659 4049 29681811 29682209 9.900000e-127 464.0
57 TraesCS2A01G545400 chr5A 98.701 77 1 0 4594 4670 503934879 503934803 2.450000e-28 137.0
58 TraesCS2A01G545400 chr4B 85.854 205 25 3 1889 2091 253655321 253655523 1.100000e-51 215.0
59 TraesCS2A01G545400 chr4B 85.854 205 25 4 1889 2091 559766745 559766543 1.100000e-51 215.0
60 TraesCS2A01G545400 chr7D 81.720 186 24 5 1915 2091 626145659 626145475 4.070000e-31 147.0
61 TraesCS2A01G545400 chr7D 100.000 28 0 0 1350 1377 595527352 595527325 9.000000e-03 52.8
62 TraesCS2A01G545400 chr3D 96.512 86 2 1 4682 4766 400684027 400683942 1.890000e-29 141.0
63 TraesCS2A01G545400 chr3D 98.701 77 1 0 4594 4670 417205023 417205099 2.450000e-28 137.0
64 TraesCS2A01G545400 chr3B 96.429 84 3 0 4682 4765 389045510 389045593 6.810000e-29 139.0
65 TraesCS2A01G545400 chr1A 95.238 84 2 2 4588 4670 7343554 7343472 1.140000e-26 132.0
66 TraesCS2A01G545400 chr6A 89.423 104 9 2 4678 4780 170907907 170907805 4.100000e-26 130.0
67 TraesCS2A01G545400 chr6A 93.182 88 4 2 4583 4670 490438031 490438116 1.470000e-25 128.0
68 TraesCS2A01G545400 chr6A 86.325 117 12 4 4659 4774 258133045 258133158 1.910000e-24 124.0
69 TraesCS2A01G545400 chr1D 89.423 104 8 3 4669 4770 47948855 47948753 1.470000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G545400 chr2A 754348376 754353422 5046 True 9321.000000 9321 100.000000 1 5047 1 chr2A.!!$R4 5046
1 TraesCS2A01G545400 chr2A 712549775 712551076 1301 True 2189.000000 2189 97.241000 1889 3173 1 chr2A.!!$R2 1284
2 TraesCS2A01G545400 chr2A 754340005 754340505 500 True 614.000000 614 89.109000 3610 4103 1 chr2A.!!$R3 493
3 TraesCS2A01G545400 chr5B 671198830 671200132 1302 True 2202.000000 2202 97.395000 1889 3173 1 chr5B.!!$R3 1284
4 TraesCS2A01G545400 chr5B 641335994 641337275 1281 True 2050.000000 2050 95.559000 1888 3173 1 chr5B.!!$R2 1285
5 TraesCS2A01G545400 chr5B 224572813 224573741 928 True 1026.000000 1026 86.715000 2230 3172 1 chr5B.!!$R1 942
6 TraesCS2A01G545400 chr7B 667205819 667207123 1304 True 2189.000000 2189 97.171000 1886 3173 1 chr7B.!!$R3 1287
7 TraesCS2A01G545400 chr7B 667199591 667200893 1302 False 2183.000000 2183 97.165000 1889 3172 1 chr7B.!!$F3 1283
8 TraesCS2A01G545400 chr7B 84023126 84023662 536 False 660.000000 660 88.787000 887 1430 1 chr7B.!!$F1 543
9 TraesCS2A01G545400 chr1B 479074363 479075629 1266 True 1609.000000 1609 89.639000 1889 3173 1 chr1B.!!$R1 1284
10 TraesCS2A01G545400 chr3A 401403360 401404647 1287 False 757.150000 1443 91.383500 1886 3173 2 chr3A.!!$F1 1287
11 TraesCS2A01G545400 chr2B 765060664 765064329 3665 True 637.166667 1303 88.652167 1 5045 6 chr2B.!!$R4 5044
12 TraesCS2A01G545400 chr7A 22624607 22625218 611 False 990.000000 990 96.405000 1889 2480 1 chr7A.!!$F1 591
13 TraesCS2A01G545400 chr7A 722522383 722523414 1031 True 567.500000 876 87.648500 2096 3173 2 chr7A.!!$R2 1077
14 TraesCS2A01G545400 chr2D 622914842 622918258 3416 True 504.133333 881 87.881167 1 4865 6 chr2D.!!$R1 4864
15 TraesCS2A01G545400 chr6B 559406767 559408078 1311 True 486.500000 732 84.725500 1893 3174 2 chr6B.!!$R3 1281
16 TraesCS2A01G545400 chr4A 105026312 105027347 1035 False 395.000000 590 80.871000 2096 3173 2 chr4A.!!$F3 1077

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.038310 AAGGACAGCAGGCCTAAACC 59.962 55.000 2.79 5.18 33.2 3.27 F
419 432 0.105039 CCCTGCTTCCGTGGAGTATC 59.895 60.000 0.00 0.00 0.0 2.24 F
879 1374 0.319083 TTCCTTTCTACGCGCCAAGA 59.681 50.000 5.73 3.80 0.0 3.02 F
880 1375 0.535335 TCCTTTCTACGCGCCAAGAT 59.465 50.000 5.73 0.00 0.0 2.40 F
1377 1899 1.000019 TGGGACGGAGGGAGTACTG 60.000 63.158 0.00 0.00 0.0 2.74 F
1775 2407 1.745320 AATCTGTACGGGGGCGCTAG 61.745 60.000 7.64 0.00 0.0 3.42 F
3187 3997 0.540365 CCCTGCAACCAACATGACCT 60.540 55.000 0.00 0.00 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1354 1876 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.0 0.00 1.90 R
1356 1878 0.901580 GTACTCCCTCCGTCCCACAA 60.902 60.000 0.00 0.0 0.00 3.33 R
1775 2407 2.094417 GCCACTGTTTCAATAGACGAGC 59.906 50.000 0.00 0.0 0.00 5.03 R
1865 2497 4.825085 GGTTGGTTGGTTCTTATGACTGAA 59.175 41.667 0.00 0.0 0.00 3.02 R
3048 3857 0.403271 AAGAGCTGTGCATCAGGGTT 59.597 50.000 15.16 0.0 43.78 4.11 R
3731 4548 1.823899 CATAACCCGCTTGGCTCCC 60.824 63.158 0.00 0.0 37.83 4.30 R
4635 5498 0.251341 AGCCTACCCCAACTTGCTTG 60.251 55.000 0.00 0.0 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 8.589701 TGAGTAGTCATATAACTCAAAGGACA 57.410 34.615 0.00 0.00 44.89 4.02
59 60 8.687242 TGAGTAGTCATATAACTCAAAGGACAG 58.313 37.037 0.00 0.00 44.89 3.51
60 61 7.493367 AGTAGTCATATAACTCAAAGGACAGC 58.507 38.462 0.00 0.00 0.00 4.40
61 62 6.299805 AGTCATATAACTCAAAGGACAGCA 57.700 37.500 0.00 0.00 0.00 4.41
62 63 6.344500 AGTCATATAACTCAAAGGACAGCAG 58.656 40.000 0.00 0.00 0.00 4.24
65 66 0.538287 AACTCAAAGGACAGCAGGCC 60.538 55.000 0.00 0.00 0.00 5.19
66 67 1.377994 CTCAAAGGACAGCAGGCCT 59.622 57.895 0.00 0.00 35.61 5.19
67 68 0.615331 CTCAAAGGACAGCAGGCCTA 59.385 55.000 2.79 0.00 33.20 3.93
68 69 1.003580 CTCAAAGGACAGCAGGCCTAA 59.996 52.381 2.79 0.00 33.20 2.69
69 70 1.423541 TCAAAGGACAGCAGGCCTAAA 59.576 47.619 2.79 0.00 33.20 1.85
70 71 1.541588 CAAAGGACAGCAGGCCTAAAC 59.458 52.381 2.79 0.00 33.20 2.01
71 72 0.038310 AAGGACAGCAGGCCTAAACC 59.962 55.000 2.79 5.18 33.20 3.27
72 73 0.842467 AGGACAGCAGGCCTAAACCT 60.842 55.000 3.98 7.65 42.30 3.50
85 86 3.129462 GCCTAAACCTGAAGCCATCTTTC 59.871 47.826 0.00 0.00 31.48 2.62
86 87 3.696548 CCTAAACCTGAAGCCATCTTTCC 59.303 47.826 0.00 0.00 31.48 3.13
88 89 2.797177 ACCTGAAGCCATCTTTCCTC 57.203 50.000 0.00 0.00 31.48 3.71
89 90 1.988107 ACCTGAAGCCATCTTTCCTCA 59.012 47.619 0.00 0.00 31.48 3.86
90 91 2.376518 ACCTGAAGCCATCTTTCCTCAA 59.623 45.455 0.00 0.00 31.48 3.02
91 92 3.015327 CCTGAAGCCATCTTTCCTCAAG 58.985 50.000 0.00 0.00 31.48 3.02
92 93 3.307975 CCTGAAGCCATCTTTCCTCAAGA 60.308 47.826 0.00 0.00 46.01 3.02
135 142 0.106708 TGAAGAAGCAGTTGCCGTCT 59.893 50.000 0.00 1.50 43.38 4.18
210 217 1.452108 CATGTCGGCCTTCTTCCCC 60.452 63.158 0.00 0.00 0.00 4.81
283 296 0.598680 GCCGGGAGATCGATCAAGTG 60.599 60.000 26.47 13.28 0.00 3.16
336 349 2.431260 TTCGTTACCGCTGCGTCC 60.431 61.111 21.59 4.48 0.00 4.79
416 429 4.021925 GCCCTGCTTCCGTGGAGT 62.022 66.667 0.00 0.00 0.00 3.85
417 430 2.656069 GCCCTGCTTCCGTGGAGTA 61.656 63.158 0.00 0.00 0.00 2.59
419 432 0.105039 CCCTGCTTCCGTGGAGTATC 59.895 60.000 0.00 0.00 0.00 2.24
494 510 2.043852 GGAGACGGGGCAGAGAGA 60.044 66.667 0.00 0.00 0.00 3.10
495 511 2.124693 GGAGACGGGGCAGAGAGAG 61.125 68.421 0.00 0.00 0.00 3.20
496 512 1.077357 GAGACGGGGCAGAGAGAGA 60.077 63.158 0.00 0.00 0.00 3.10
497 513 1.077068 AGACGGGGCAGAGAGAGAG 60.077 63.158 0.00 0.00 0.00 3.20
498 514 1.077357 GACGGGGCAGAGAGAGAGA 60.077 63.158 0.00 0.00 0.00 3.10
499 515 1.077068 ACGGGGCAGAGAGAGAGAG 60.077 63.158 0.00 0.00 0.00 3.20
500 516 1.827789 CGGGGCAGAGAGAGAGAGG 60.828 68.421 0.00 0.00 0.00 3.69
510 526 0.768622 GAGAGAGAGGGATCGGAGGA 59.231 60.000 0.00 0.00 0.00 3.71
521 537 2.700897 GGATCGGAGGAGGAAAAGATCA 59.299 50.000 0.00 0.00 36.99 2.92
525 541 1.133945 GGAGGAGGAAAAGATCAGCCC 60.134 57.143 0.00 0.00 0.00 5.19
558 821 1.886542 GGGCTTAAATATTGGCCGAGG 59.113 52.381 16.14 0.00 44.91 4.63
559 822 2.488347 GGGCTTAAATATTGGCCGAGGA 60.488 50.000 16.14 0.00 44.91 3.71
630 904 3.267812 ACCATTTCACCCAGATCATGTCT 59.732 43.478 0.00 0.00 37.80 3.41
684 1175 1.685820 CAGAAACCCCACCCTCCTC 59.314 63.158 0.00 0.00 0.00 3.71
688 1179 2.062448 AAACCCCACCCTCCTCCTCT 62.062 60.000 0.00 0.00 0.00 3.69
690 1181 2.041405 CCCACCCTCCTCCTCTCC 60.041 72.222 0.00 0.00 0.00 3.71
691 1182 2.641746 CCCACCCTCCTCCTCTCCT 61.642 68.421 0.00 0.00 0.00 3.69
816 1311 1.115326 GGTTGCCTGAGCCCTTTTGT 61.115 55.000 0.00 0.00 38.69 2.83
845 1340 2.806009 CCCTAGCTCTGCCTGGCTC 61.806 68.421 21.03 6.48 39.65 4.70
869 1364 3.052036 CGTTCGTTTCGGTTCCTTTCTA 58.948 45.455 0.00 0.00 0.00 2.10
873 1368 1.125566 GTTTCGGTTCCTTTCTACGCG 59.874 52.381 3.53 3.53 0.00 6.01
875 1370 2.450345 CGGTTCCTTTCTACGCGCC 61.450 63.158 5.73 0.00 0.00 6.53
876 1371 1.375013 GGTTCCTTTCTACGCGCCA 60.375 57.895 5.73 0.00 0.00 5.69
877 1372 0.952010 GGTTCCTTTCTACGCGCCAA 60.952 55.000 5.73 0.00 0.00 4.52
878 1373 0.442699 GTTCCTTTCTACGCGCCAAG 59.557 55.000 5.73 0.82 0.00 3.61
879 1374 0.319083 TTCCTTTCTACGCGCCAAGA 59.681 50.000 5.73 3.80 0.00 3.02
880 1375 0.535335 TCCTTTCTACGCGCCAAGAT 59.465 50.000 5.73 0.00 0.00 2.40
881 1376 1.066430 TCCTTTCTACGCGCCAAGATT 60.066 47.619 5.73 0.00 0.00 2.40
882 1377 1.737793 CCTTTCTACGCGCCAAGATTT 59.262 47.619 5.73 0.00 0.00 2.17
883 1378 2.223044 CCTTTCTACGCGCCAAGATTTC 60.223 50.000 5.73 0.00 0.00 2.17
884 1379 1.365699 TTCTACGCGCCAAGATTTCC 58.634 50.000 5.73 0.00 0.00 3.13
902 1397 2.485122 GCGCCAGATTTGGTTCCG 59.515 61.111 3.90 0.40 46.80 4.30
932 1427 2.546321 CTACGCGCATGAATCCGC 59.454 61.111 5.73 0.25 46.17 5.54
938 1433 2.709475 GCATGAATCCGCGGTGTC 59.291 61.111 27.15 22.67 0.00 3.67
967 1462 7.041916 TGCTGTAAAATTTGAGCCATTTTCTTG 60.042 33.333 12.26 0.00 35.78 3.02
1075 1584 2.744741 GCCTTCTCAAAGTCTTGCTACC 59.255 50.000 0.00 0.00 32.14 3.18
1104 1618 5.449314 CCACCTTAGTCAGTCTTGATACTCG 60.449 48.000 0.00 0.00 35.39 4.18
1109 1623 3.310227 AGTCAGTCTTGATACTCGTAGCG 59.690 47.826 0.00 0.00 35.39 4.26
1130 1652 4.211374 GCGGTTACTTGATATTGTAGCAGG 59.789 45.833 0.00 0.00 0.00 4.85
1138 1660 5.102953 TGATATTGTAGCAGGCAAGAGTT 57.897 39.130 0.00 0.00 0.00 3.01
1154 1676 7.400052 AGGCAAGAGTTGGTTAATATGGAATTT 59.600 33.333 0.00 0.00 0.00 1.82
1159 1681 9.699410 AGAGTTGGTTAATATGGAATTTGATCA 57.301 29.630 0.00 0.00 0.00 2.92
1173 1695 6.814644 GGAATTTGATCAAACATGCATCTTCA 59.185 34.615 22.71 0.00 32.51 3.02
1176 1698 2.617250 TCAAACATGCATCTTCACGC 57.383 45.000 0.00 0.00 0.00 5.34
1306 1828 7.930865 TGTTAAAACCTTGGAGAAAAATCATGG 59.069 33.333 0.00 0.00 33.55 3.66
1318 1840 1.051812 AATCATGGCTACTCCCTCCG 58.948 55.000 0.00 0.00 0.00 4.63
1322 1844 3.217743 GGCTACTCCCTCCGTCCG 61.218 72.222 0.00 0.00 0.00 4.79
1377 1899 1.000019 TGGGACGGAGGGAGTACTG 60.000 63.158 0.00 0.00 0.00 2.74
1382 1904 1.747924 GACGGAGGGAGTACTGGTTAC 59.252 57.143 0.00 0.00 0.00 2.50
1416 1938 3.126001 TGGTCTGCTACTTGAACCTTG 57.874 47.619 0.00 0.00 0.00 3.61
1418 1940 2.224548 GGTCTGCTACTTGAACCTTGGT 60.225 50.000 0.00 0.00 0.00 3.67
1455 1977 7.669427 TCAGATTATGTGTTTGCCTCAAAAAT 58.331 30.769 0.00 0.00 35.03 1.82
1456 1978 8.149647 TCAGATTATGTGTTTGCCTCAAAAATT 58.850 29.630 0.00 0.00 35.03 1.82
1496 2120 1.918262 AGGGATGTGATCATGTGGTGT 59.082 47.619 0.00 0.00 34.06 4.16
1510 2134 5.708230 TCATGTGGTGTTTATGGTTAACTCC 59.292 40.000 5.42 0.00 38.82 3.85
1514 2138 6.882140 TGTGGTGTTTATGGTTAACTCCTATG 59.118 38.462 5.42 0.00 39.01 2.23
1532 2156 9.959721 ACTCCTATGACTTAAATGCTTAAAGAA 57.040 29.630 2.71 0.00 0.00 2.52
1538 2162 8.445275 TGACTTAAATGCTTAAAGAACTCACA 57.555 30.769 2.71 0.00 0.00 3.58
1539 2163 9.066892 TGACTTAAATGCTTAAAGAACTCACAT 57.933 29.630 2.71 0.00 0.00 3.21
1540 2164 9.548208 GACTTAAATGCTTAAAGAACTCACATC 57.452 33.333 2.71 0.00 0.00 3.06
1541 2165 9.066892 ACTTAAATGCTTAAAGAACTCACATCA 57.933 29.630 2.71 0.00 0.00 3.07
1542 2166 9.334693 CTTAAATGCTTAAAGAACTCACATCAC 57.665 33.333 0.00 0.00 0.00 3.06
1543 2167 7.516198 AAATGCTTAAAGAACTCACATCACT 57.484 32.000 0.00 0.00 0.00 3.41
1544 2168 5.929697 TGCTTAAAGAACTCACATCACTG 57.070 39.130 0.00 0.00 0.00 3.66
1545 2169 5.610398 TGCTTAAAGAACTCACATCACTGA 58.390 37.500 0.00 0.00 0.00 3.41
1546 2170 6.233434 TGCTTAAAGAACTCACATCACTGAT 58.767 36.000 0.00 0.00 0.00 2.90
1547 2171 6.712095 TGCTTAAAGAACTCACATCACTGATT 59.288 34.615 0.00 0.00 0.00 2.57
1548 2172 7.020010 GCTTAAAGAACTCACATCACTGATTG 58.980 38.462 0.00 0.00 0.00 2.67
1549 2173 7.308229 GCTTAAAGAACTCACATCACTGATTGT 60.308 37.037 0.00 0.00 0.00 2.71
1564 2188 4.885907 ACTGATTGTGAAAGATATGGCTGG 59.114 41.667 0.00 0.00 0.00 4.85
1565 2189 4.858850 TGATTGTGAAAGATATGGCTGGT 58.141 39.130 0.00 0.00 0.00 4.00
1566 2190 5.263599 TGATTGTGAAAGATATGGCTGGTT 58.736 37.500 0.00 0.00 0.00 3.67
1567 2191 5.716228 TGATTGTGAAAGATATGGCTGGTTT 59.284 36.000 0.00 0.00 0.00 3.27
1568 2192 6.211184 TGATTGTGAAAGATATGGCTGGTTTT 59.789 34.615 0.00 0.00 0.00 2.43
1572 2196 5.415701 GTGAAAGATATGGCTGGTTTTCTCA 59.584 40.000 0.00 0.00 0.00 3.27
1595 2219 5.887598 CACCATAAGAAAATGATCAGGTGGA 59.112 40.000 14.20 0.00 40.10 4.02
1596 2220 6.039047 CACCATAAGAAAATGATCAGGTGGAG 59.961 42.308 14.20 3.94 40.10 3.86
1597 2221 6.125029 CCATAAGAAAATGATCAGGTGGAGT 58.875 40.000 0.09 0.00 0.00 3.85
1598 2222 7.092444 ACCATAAGAAAATGATCAGGTGGAGTA 60.092 37.037 0.09 0.00 0.00 2.59
1599 2223 7.941238 CCATAAGAAAATGATCAGGTGGAGTAT 59.059 37.037 0.09 0.00 0.00 2.12
1600 2224 8.997323 CATAAGAAAATGATCAGGTGGAGTATC 58.003 37.037 0.09 0.00 0.00 2.24
1601 2225 6.821616 AGAAAATGATCAGGTGGAGTATCT 57.178 37.500 0.09 0.00 33.73 1.98
1602 2226 7.205515 AGAAAATGATCAGGTGGAGTATCTT 57.794 36.000 0.09 0.00 33.73 2.40
1605 2229 3.994317 TGATCAGGTGGAGTATCTTGGA 58.006 45.455 0.00 0.00 33.73 3.53
1607 2231 4.406972 TGATCAGGTGGAGTATCTTGGAAG 59.593 45.833 0.00 0.00 33.73 3.46
1620 2252 7.856415 AGTATCTTGGAAGCTCTAGTCAAATT 58.144 34.615 0.00 0.00 0.00 1.82
1649 2281 4.766891 TCTGGATTCCTTTGAAATGTGACC 59.233 41.667 3.95 0.00 33.32 4.02
1650 2282 4.478203 TGGATTCCTTTGAAATGTGACCA 58.522 39.130 3.95 0.00 33.32 4.02
1651 2283 4.523943 TGGATTCCTTTGAAATGTGACCAG 59.476 41.667 3.95 0.00 33.32 4.00
1652 2284 4.524328 GGATTCCTTTGAAATGTGACCAGT 59.476 41.667 0.00 0.00 33.32 4.00
1653 2285 5.011023 GGATTCCTTTGAAATGTGACCAGTT 59.989 40.000 0.00 0.00 33.32 3.16
1654 2286 4.916983 TCCTTTGAAATGTGACCAGTTG 57.083 40.909 0.00 0.00 0.00 3.16
1657 2289 4.501915 CCTTTGAAATGTGACCAGTTGCAT 60.502 41.667 0.00 0.00 0.00 3.96
1658 2290 5.278907 CCTTTGAAATGTGACCAGTTGCATA 60.279 40.000 0.00 0.00 0.00 3.14
1660 2292 5.981088 TGAAATGTGACCAGTTGCATATT 57.019 34.783 0.00 0.00 0.00 1.28
1669 2301 3.055891 ACCAGTTGCATATTCTTTTGGCC 60.056 43.478 0.00 0.00 0.00 5.36
1670 2302 3.055963 CCAGTTGCATATTCTTTTGGCCA 60.056 43.478 0.00 0.00 0.00 5.36
1679 2311 1.999648 TCTTTTGGCCAGTGATGCTT 58.000 45.000 5.11 0.00 0.00 3.91
1680 2312 3.153369 TCTTTTGGCCAGTGATGCTTA 57.847 42.857 5.11 0.00 0.00 3.09
1708 2340 7.011189 GCAAAATAACATGATGCAAACACTTC 58.989 34.615 0.00 0.00 37.00 3.01
1714 2346 4.581824 ACATGATGCAAACACTTCTCTTGT 59.418 37.500 0.00 0.00 0.00 3.16
1775 2407 1.745320 AATCTGTACGGGGGCGCTAG 61.745 60.000 7.64 0.00 0.00 3.42
1791 2423 3.435566 CGCTAGCTCGTCTATTGAAACA 58.564 45.455 13.93 0.00 0.00 2.83
1865 2497 6.349197 CCTTCAAACCACAAATGCTTGTTTTT 60.349 34.615 0.00 0.00 43.45 1.94
2961 3757 6.751157 TCATAGACAAAAACTACGTGAGGAA 58.249 36.000 0.00 0.00 0.00 3.36
3179 3989 4.659172 CTCCGCCCCTGCAACCAA 62.659 66.667 0.00 0.00 37.32 3.67
3180 3990 4.966787 TCCGCCCCTGCAACCAAC 62.967 66.667 0.00 0.00 37.32 3.77
3182 3992 2.990967 CGCCCCTGCAACCAACAT 60.991 61.111 0.00 0.00 37.32 2.71
3183 3993 2.658422 GCCCCTGCAACCAACATG 59.342 61.111 0.00 0.00 37.47 3.21
3184 3994 1.907807 GCCCCTGCAACCAACATGA 60.908 57.895 0.00 0.00 37.47 3.07
3185 3995 1.966762 CCCCTGCAACCAACATGAC 59.033 57.895 0.00 0.00 0.00 3.06
3186 3996 1.535204 CCCCTGCAACCAACATGACC 61.535 60.000 0.00 0.00 0.00 4.02
3187 3997 0.540365 CCCTGCAACCAACATGACCT 60.540 55.000 0.00 0.00 0.00 3.85
3287 4098 6.258230 ACGATATCGATGTTCCGGTATTAA 57.742 37.500 30.75 0.00 43.02 1.40
3293 4104 3.985925 CGATGTTCCGGTATTAACTAGGC 59.014 47.826 0.00 0.00 0.00 3.93
3344 4155 6.038603 GTGTTATTATTGCTGCCAAGATCTGA 59.961 38.462 0.00 0.00 33.80 3.27
3361 4172 7.224522 AGATCTGAGATTTTTCTTTGGTTGG 57.775 36.000 0.00 0.00 0.00 3.77
3362 4173 5.200368 TCTGAGATTTTTCTTTGGTTGGC 57.800 39.130 0.00 0.00 0.00 4.52
3363 4174 4.895297 TCTGAGATTTTTCTTTGGTTGGCT 59.105 37.500 0.00 0.00 0.00 4.75
3364 4175 5.363580 TCTGAGATTTTTCTTTGGTTGGCTT 59.636 36.000 0.00 0.00 0.00 4.35
3387 4198 7.461182 TTCTTAATTGTCTACAATGGGGTTG 57.539 36.000 9.01 0.00 45.06 3.77
3411 4222 4.599047 AGCTAGATATCTGTGACTTGCC 57.401 45.455 15.79 0.00 33.25 4.52
3456 4267 4.408270 TCTTCATGAGGCATTCTCTAAGCT 59.592 41.667 0.00 0.00 42.86 3.74
3511 4323 4.536765 AGGGCCATAATGTAAGAGTTTGG 58.463 43.478 6.18 0.00 0.00 3.28
3518 4334 8.416329 GCCATAATGTAAGAGTTTGGAATGATT 58.584 33.333 0.00 0.00 0.00 2.57
3542 4358 6.065374 TCAAAACTAACAGGGTAATTGCTCA 58.935 36.000 0.00 0.00 0.00 4.26
3572 4388 8.461222 TGAGTAATGCATAATTTTCTTGAGGTG 58.539 33.333 0.00 0.00 0.00 4.00
3574 4390 5.927281 ATGCATAATTTTCTTGAGGTGCT 57.073 34.783 0.00 0.00 32.87 4.40
3575 4391 5.314923 TGCATAATTTTCTTGAGGTGCTC 57.685 39.130 0.00 0.00 32.87 4.26
3576 4392 4.158394 TGCATAATTTTCTTGAGGTGCTCC 59.842 41.667 0.00 0.00 32.87 4.70
3577 4393 4.440663 GCATAATTTTCTTGAGGTGCTCCC 60.441 45.833 0.00 0.00 0.00 4.30
3587 4403 2.327325 AGGTGCTCCCTCTGTAAAGA 57.673 50.000 0.00 0.00 40.71 2.52
3588 4404 2.621070 AGGTGCTCCCTCTGTAAAGAA 58.379 47.619 0.00 0.00 40.71 2.52
3589 4405 2.979678 AGGTGCTCCCTCTGTAAAGAAA 59.020 45.455 0.00 0.00 40.71 2.52
3590 4406 3.589288 AGGTGCTCCCTCTGTAAAGAAAT 59.411 43.478 0.00 0.00 40.71 2.17
3591 4407 4.783227 AGGTGCTCCCTCTGTAAAGAAATA 59.217 41.667 0.00 0.00 40.71 1.40
3592 4408 5.430089 AGGTGCTCCCTCTGTAAAGAAATAT 59.570 40.000 0.00 0.00 40.71 1.28
3593 4409 6.615726 AGGTGCTCCCTCTGTAAAGAAATATA 59.384 38.462 0.00 0.00 40.71 0.86
3594 4410 7.127339 AGGTGCTCCCTCTGTAAAGAAATATAA 59.873 37.037 0.00 0.00 40.71 0.98
3595 4411 7.939588 GGTGCTCCCTCTGTAAAGAAATATAAT 59.060 37.037 0.00 0.00 0.00 1.28
3596 4412 9.998106 GTGCTCCCTCTGTAAAGAAATATAATA 57.002 33.333 0.00 0.00 0.00 0.98
3597 4413 9.998106 TGCTCCCTCTGTAAAGAAATATAATAC 57.002 33.333 0.00 0.00 0.00 1.89
3598 4414 9.998106 GCTCCCTCTGTAAAGAAATATAATACA 57.002 33.333 0.00 0.00 0.00 2.29
3620 4436 7.676683 ACAGAGGGACTAATTGCTTATCTAA 57.323 36.000 0.00 0.00 41.55 2.10
3647 4463 6.708054 CACAGATGTTTTCCAAGTAGAGAGTT 59.292 38.462 0.00 0.00 0.00 3.01
3683 4500 3.960102 TCCTGTTCTGGTTTCAGCAAATT 59.040 39.130 0.00 0.00 40.69 1.82
3731 4548 0.105964 TCAAGGTGGTGGACAACTCG 59.894 55.000 0.00 0.00 46.59 4.18
3899 4716 1.377725 CATGAAGAAGGGGCGCAGT 60.378 57.895 10.83 0.00 0.00 4.40
3929 4746 0.031721 AGGTCCAGTTCGACGACAAC 59.968 55.000 0.00 0.00 33.30 3.32
3968 4791 2.045926 GAGCTGATTGGCACCCGT 60.046 61.111 0.00 0.00 34.17 5.28
4025 4848 1.509373 AGCATCTCAAGATCCTGGCT 58.491 50.000 0.00 0.00 31.21 4.75
4050 4873 4.244066 GGCTGAGCACATAGTATGAGATG 58.756 47.826 17.13 6.05 0.00 2.90
4051 4874 3.679025 GCTGAGCACATAGTATGAGATGC 59.321 47.826 17.13 15.13 32.00 3.91
4074 4897 4.704540 CCTATCTGCTGACCTGTATCTAGG 59.295 50.000 0.00 0.00 43.71 3.02
4136 4963 6.011981 ACCTGGGATGTTTTGGTTCTCTATTA 60.012 38.462 0.00 0.00 0.00 0.98
4188 5015 4.970662 TCTGTTTGCCAATAATCTCTGC 57.029 40.909 0.00 0.00 0.00 4.26
4244 5071 5.978814 ACCAGACAAGGATATGTGTACTTC 58.021 41.667 0.00 0.00 32.57 3.01
4249 5076 4.159693 ACAAGGATATGTGTACTTCGCTCA 59.840 41.667 0.00 0.00 30.82 4.26
4253 5080 7.233389 AGGATATGTGTACTTCGCTCATTAT 57.767 36.000 0.00 0.00 0.00 1.28
4259 5086 5.593095 TGTGTACTTCGCTCATTATAGGACT 59.407 40.000 0.00 0.00 0.00 3.85
4269 5096 6.116126 GCTCATTATAGGACTTGACCAAACT 58.884 40.000 0.00 0.00 0.00 2.66
4272 5099 7.685481 TCATTATAGGACTTGACCAAACTTCA 58.315 34.615 0.00 0.00 0.00 3.02
4276 5103 2.031683 GGACTTGACCAAACTTCACACG 59.968 50.000 0.00 0.00 0.00 4.49
4280 5107 2.004017 TGACCAAACTTCACACGACAC 58.996 47.619 0.00 0.00 0.00 3.67
4426 5274 1.064463 TGGGCATCTCCAAGGTTCATC 60.064 52.381 0.00 0.00 36.21 2.92
4434 5282 3.009033 TCTCCAAGGTTCATCGGATGTTT 59.991 43.478 17.01 6.06 0.00 2.83
4435 5283 3.758554 CTCCAAGGTTCATCGGATGTTTT 59.241 43.478 17.01 5.75 0.00 2.43
4436 5284 3.505680 TCCAAGGTTCATCGGATGTTTTG 59.494 43.478 17.01 15.08 0.00 2.44
4437 5285 3.367292 CCAAGGTTCATCGGATGTTTTGG 60.367 47.826 17.01 18.86 0.00 3.28
4438 5286 1.818674 AGGTTCATCGGATGTTTTGGC 59.181 47.619 17.01 3.58 0.00 4.52
4439 5287 1.818674 GGTTCATCGGATGTTTTGGCT 59.181 47.619 17.01 0.00 0.00 4.75
4440 5288 2.415893 GGTTCATCGGATGTTTTGGCTG 60.416 50.000 17.01 0.00 0.00 4.85
4441 5289 2.198827 TCATCGGATGTTTTGGCTGT 57.801 45.000 17.01 0.00 0.00 4.40
4442 5290 2.083774 TCATCGGATGTTTTGGCTGTC 58.916 47.619 17.01 0.00 0.00 3.51
4443 5291 2.086869 CATCGGATGTTTTGGCTGTCT 58.913 47.619 9.85 0.00 0.00 3.41
4444 5292 1.808411 TCGGATGTTTTGGCTGTCTC 58.192 50.000 0.00 0.00 0.00 3.36
4445 5293 1.347707 TCGGATGTTTTGGCTGTCTCT 59.652 47.619 0.00 0.00 0.00 3.10
4446 5294 2.154462 CGGATGTTTTGGCTGTCTCTT 58.846 47.619 0.00 0.00 0.00 2.85
4447 5295 2.095567 CGGATGTTTTGGCTGTCTCTTG 60.096 50.000 0.00 0.00 0.00 3.02
4448 5296 2.352127 GGATGTTTTGGCTGTCTCTTGC 60.352 50.000 0.00 0.00 0.00 4.01
4449 5297 2.057137 TGTTTTGGCTGTCTCTTGCT 57.943 45.000 0.00 0.00 0.00 3.91
4450 5298 1.677576 TGTTTTGGCTGTCTCTTGCTG 59.322 47.619 0.00 0.00 0.00 4.41
4451 5299 1.678101 GTTTTGGCTGTCTCTTGCTGT 59.322 47.619 0.00 0.00 0.00 4.40
4452 5300 2.057137 TTTGGCTGTCTCTTGCTGTT 57.943 45.000 0.00 0.00 0.00 3.16
4472 5320 3.781079 TTTGGTTGTCTCTTGCTGTTG 57.219 42.857 0.00 0.00 0.00 3.33
4537 5388 7.807977 TGTCTATTCCAAAAGAGAATATGCC 57.192 36.000 0.00 0.00 34.66 4.40
4539 5390 7.001073 GTCTATTCCAAAAGAGAATATGCCCT 58.999 38.462 0.00 0.00 34.66 5.19
4556 5412 1.338200 CCCTGGTGAAGCTGTAGTGAC 60.338 57.143 0.00 0.00 0.00 3.67
4602 5465 9.918630 TGTTCAGTAATTACTAGTTACTCCAAC 57.081 33.333 17.62 8.66 39.65 3.77
4603 5466 9.918630 GTTCAGTAATTACTAGTTACTCCAACA 57.081 33.333 17.62 0.00 39.65 3.33
4605 5468 9.918630 TCAGTAATTACTAGTTACTCCAACAAC 57.081 33.333 17.62 0.00 39.65 3.32
4606 5469 9.701098 CAGTAATTACTAGTTACTCCAACAACA 57.299 33.333 17.62 0.00 39.65 3.33
4609 5472 8.967664 AATTACTAGTTACTCCAACAACAACA 57.032 30.769 0.00 0.00 39.81 3.33
4610 5473 8.967664 ATTACTAGTTACTCCAACAACAACAA 57.032 30.769 0.00 0.00 39.81 2.83
4611 5474 6.673154 ACTAGTTACTCCAACAACAACAAC 57.327 37.500 0.00 0.00 39.81 3.32
4612 5475 6.174760 ACTAGTTACTCCAACAACAACAACA 58.825 36.000 0.00 0.00 39.81 3.33
4613 5476 5.968528 AGTTACTCCAACAACAACAACAA 57.031 34.783 0.00 0.00 39.81 2.83
4614 5477 5.705902 AGTTACTCCAACAACAACAACAAC 58.294 37.500 0.00 0.00 39.81 3.32
4615 5478 5.241949 AGTTACTCCAACAACAACAACAACA 59.758 36.000 0.00 0.00 39.81 3.33
4616 5479 4.592485 ACTCCAACAACAACAACAACAA 57.408 36.364 0.00 0.00 0.00 2.83
4617 5480 4.303282 ACTCCAACAACAACAACAACAAC 58.697 39.130 0.00 0.00 0.00 3.32
4618 5481 4.202161 ACTCCAACAACAACAACAACAACA 60.202 37.500 0.00 0.00 0.00 3.33
4619 5482 4.693283 TCCAACAACAACAACAACAACAA 58.307 34.783 0.00 0.00 0.00 2.83
4620 5483 4.508124 TCCAACAACAACAACAACAACAAC 59.492 37.500 0.00 0.00 0.00 3.32
4621 5484 4.271049 CCAACAACAACAACAACAACAACA 59.729 37.500 0.00 0.00 0.00 3.33
4622 5485 5.220662 CCAACAACAACAACAACAACAACAA 60.221 36.000 0.00 0.00 0.00 2.83
4623 5486 6.250819 CAACAACAACAACAACAACAACAAA 58.749 32.000 0.00 0.00 0.00 2.83
4624 5487 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
4625 5488 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
4626 5489 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
4627 5490 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
4628 5491 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
4629 5492 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
4630 5493 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
4631 5494 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
4632 5495 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
4633 5496 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
4634 5497 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
4635 5498 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
4636 5499 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
4637 5500 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
4638 5501 3.636764 ACAACAAAGCCTTTAGTCCCAAG 59.363 43.478 0.00 0.00 0.00 3.61
4639 5502 2.239400 ACAAAGCCTTTAGTCCCAAGC 58.761 47.619 0.00 0.00 0.00 4.01
4640 5503 2.238521 CAAAGCCTTTAGTCCCAAGCA 58.761 47.619 0.00 0.00 0.00 3.91
4641 5504 2.627699 CAAAGCCTTTAGTCCCAAGCAA 59.372 45.455 0.00 0.00 0.00 3.91
4642 5505 2.206576 AGCCTTTAGTCCCAAGCAAG 57.793 50.000 0.00 0.00 0.00 4.01
4643 5506 1.425448 AGCCTTTAGTCCCAAGCAAGT 59.575 47.619 0.00 0.00 0.00 3.16
4644 5507 2.158460 AGCCTTTAGTCCCAAGCAAGTT 60.158 45.455 0.00 0.00 0.00 2.66
4645 5508 2.029918 GCCTTTAGTCCCAAGCAAGTTG 60.030 50.000 0.00 0.00 35.71 3.16
4653 5516 2.267045 CAAGCAAGTTGGGGTAGGC 58.733 57.895 4.75 0.00 31.82 3.93
4654 5517 0.251341 CAAGCAAGTTGGGGTAGGCT 60.251 55.000 4.75 0.00 31.82 4.58
4655 5518 1.004277 CAAGCAAGTTGGGGTAGGCTA 59.996 52.381 4.75 0.00 31.82 3.93
4656 5519 0.912486 AGCAAGTTGGGGTAGGCTAG 59.088 55.000 4.75 0.00 0.00 3.42
4657 5520 0.909623 GCAAGTTGGGGTAGGCTAGA 59.090 55.000 4.75 0.00 0.00 2.43
4658 5521 1.134371 GCAAGTTGGGGTAGGCTAGAG 60.134 57.143 4.75 0.00 0.00 2.43
4659 5522 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
4660 5523 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
4661 5524 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
4662 5525 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
4663 5526 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
4664 5527 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
4665 5528 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
4686 5549 9.895138 TGAAACCCATTAATTACTAGTTACTCC 57.105 33.333 0.00 0.00 0.00 3.85
4687 5550 9.334947 GAAACCCATTAATTACTAGTTACTCCC 57.665 37.037 0.00 0.00 0.00 4.30
4688 5551 8.634188 AACCCATTAATTACTAGTTACTCCCT 57.366 34.615 0.00 0.00 0.00 4.20
4689 5552 8.260099 ACCCATTAATTACTAGTTACTCCCTC 57.740 38.462 0.00 0.00 0.00 4.30
4690 5553 7.291885 ACCCATTAATTACTAGTTACTCCCTCC 59.708 40.741 0.00 0.00 0.00 4.30
4691 5554 7.376615 CCATTAATTACTAGTTACTCCCTCCG 58.623 42.308 0.00 0.00 0.00 4.63
4692 5555 7.015001 CCATTAATTACTAGTTACTCCCTCCGT 59.985 40.741 0.00 0.00 0.00 4.69
4693 5556 9.071276 CATTAATTACTAGTTACTCCCTCCGTA 57.929 37.037 0.00 0.00 0.00 4.02
4694 5557 9.646522 ATTAATTACTAGTTACTCCCTCCGTAA 57.353 33.333 0.00 0.00 0.00 3.18
4695 5558 7.961326 AATTACTAGTTACTCCCTCCGTAAA 57.039 36.000 0.00 0.00 0.00 2.01
4696 5559 7.961326 ATTACTAGTTACTCCCTCCGTAAAA 57.039 36.000 0.00 0.00 0.00 1.52
4697 5560 7.775053 TTACTAGTTACTCCCTCCGTAAAAA 57.225 36.000 0.00 0.00 0.00 1.94
4760 5623 8.488651 ACGTTCTTATATTTGTTTACAGAGGG 57.511 34.615 0.00 0.00 0.00 4.30
4761 5624 8.316214 ACGTTCTTATATTTGTTTACAGAGGGA 58.684 33.333 0.00 0.00 0.00 4.20
4762 5625 8.818057 CGTTCTTATATTTGTTTACAGAGGGAG 58.182 37.037 0.00 0.00 0.00 4.30
5045 5933 3.354089 AAAACATGAACACCTCGCTTG 57.646 42.857 0.00 0.00 0.00 4.01
5046 5934 2.254546 AACATGAACACCTCGCTTGA 57.745 45.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.002857 ATGGCTTCAGGTTTAGGCCT 58.997 50.000 11.78 11.78 42.84 5.19
62 63 1.064389 AGATGGCTTCAGGTTTAGGCC 60.064 52.381 0.00 0.00 42.73 5.19
65 66 4.593956 AGGAAAGATGGCTTCAGGTTTAG 58.406 43.478 3.03 0.00 31.82 1.85
66 67 4.042809 TGAGGAAAGATGGCTTCAGGTTTA 59.957 41.667 3.03 0.00 31.82 2.01
67 68 3.181429 TGAGGAAAGATGGCTTCAGGTTT 60.181 43.478 3.03 0.00 31.82 3.27
68 69 2.376518 TGAGGAAAGATGGCTTCAGGTT 59.623 45.455 3.03 0.00 31.82 3.50
69 70 1.988107 TGAGGAAAGATGGCTTCAGGT 59.012 47.619 3.03 0.00 31.82 4.00
70 71 2.795231 TGAGGAAAGATGGCTTCAGG 57.205 50.000 3.03 0.00 31.82 3.86
71 72 3.947868 TCTTGAGGAAAGATGGCTTCAG 58.052 45.455 3.03 0.00 40.09 3.02
85 86 7.329499 TCTTCAGATTCTCTTTCATCTTGAGG 58.671 38.462 0.00 0.00 0.00 3.86
86 87 8.774890 TTCTTCAGATTCTCTTTCATCTTGAG 57.225 34.615 0.00 0.00 0.00 3.02
88 89 9.609950 GTTTTCTTCAGATTCTCTTTCATCTTG 57.390 33.333 0.00 0.00 0.00 3.02
89 90 8.791675 GGTTTTCTTCAGATTCTCTTTCATCTT 58.208 33.333 0.00 0.00 0.00 2.40
90 91 8.162746 AGGTTTTCTTCAGATTCTCTTTCATCT 58.837 33.333 0.00 0.00 0.00 2.90
91 92 8.235905 CAGGTTTTCTTCAGATTCTCTTTCATC 58.764 37.037 0.00 0.00 0.00 2.92
92 93 7.941238 TCAGGTTTTCTTCAGATTCTCTTTCAT 59.059 33.333 0.00 0.00 0.00 2.57
93 94 7.282585 TCAGGTTTTCTTCAGATTCTCTTTCA 58.717 34.615 0.00 0.00 0.00 2.69
96 97 7.512992 TCTTCAGGTTTTCTTCAGATTCTCTT 58.487 34.615 0.00 0.00 0.00 2.85
135 142 0.393944 AGATAGTCGAGGTCACCGCA 60.394 55.000 0.00 0.00 0.00 5.69
239 246 2.747855 GACTCAGGCCGCCTTTGG 60.748 66.667 9.99 5.35 0.00 3.28
398 411 3.710722 CTCCACGGAAGCAGGGCT 61.711 66.667 0.00 0.00 42.56 5.19
400 413 0.105039 GATACTCCACGGAAGCAGGG 59.895 60.000 0.00 0.00 0.00 4.45
401 414 0.105039 GGATACTCCACGGAAGCAGG 59.895 60.000 0.00 0.00 36.28 4.85
416 429 1.152610 CCCCGGTTCCTCGAGGATA 60.153 63.158 33.97 21.26 44.98 2.59
417 430 2.444140 CCCCGGTTCCTCGAGGAT 60.444 66.667 33.97 0.00 44.98 3.24
453 469 1.911702 GACTTCAGTAGCCCCCACCC 61.912 65.000 0.00 0.00 0.00 4.61
484 500 0.188342 ATCCCTCTCTCTCTCTGCCC 59.812 60.000 0.00 0.00 0.00 5.36
485 501 1.620822 GATCCCTCTCTCTCTCTGCC 58.379 60.000 0.00 0.00 0.00 4.85
486 502 1.238439 CGATCCCTCTCTCTCTCTGC 58.762 60.000 0.00 0.00 0.00 4.26
487 503 1.419762 TCCGATCCCTCTCTCTCTCTG 59.580 57.143 0.00 0.00 0.00 3.35
494 510 0.699577 TCCTCCTCCGATCCCTCTCT 60.700 60.000 0.00 0.00 0.00 3.10
495 511 0.186386 TTCCTCCTCCGATCCCTCTC 59.814 60.000 0.00 0.00 0.00 3.20
496 512 0.637195 TTTCCTCCTCCGATCCCTCT 59.363 55.000 0.00 0.00 0.00 3.69
497 513 1.414550 CTTTTCCTCCTCCGATCCCTC 59.585 57.143 0.00 0.00 0.00 4.30
498 514 1.008449 TCTTTTCCTCCTCCGATCCCT 59.992 52.381 0.00 0.00 0.00 4.20
499 515 1.497161 TCTTTTCCTCCTCCGATCCC 58.503 55.000 0.00 0.00 0.00 3.85
500 516 2.700897 TGATCTTTTCCTCCTCCGATCC 59.299 50.000 0.00 0.00 0.00 3.36
510 526 1.609783 CCCGGGCTGATCTTTTCCT 59.390 57.895 8.08 0.00 0.00 3.36
532 548 3.306294 GGCCAATATTTAAGCCCATGAGC 60.306 47.826 0.00 0.00 39.60 4.26
557 820 3.064931 CTGTAAACACTTCGGGTCTTCC 58.935 50.000 0.00 0.00 0.00 3.46
558 821 3.986277 TCTGTAAACACTTCGGGTCTTC 58.014 45.455 0.00 0.00 0.00 2.87
559 822 3.244112 CCTCTGTAAACACTTCGGGTCTT 60.244 47.826 0.00 0.00 0.00 3.01
603 876 0.623723 TCTGGGTGAAATGGTAGCCC 59.376 55.000 0.00 0.00 39.73 5.19
604 877 2.092429 TGATCTGGGTGAAATGGTAGCC 60.092 50.000 0.00 0.00 35.09 3.93
640 1131 2.185867 GCGCGACCTAATCCCACA 59.814 61.111 12.10 0.00 0.00 4.17
684 1175 1.292941 TGGGAGGAGGAGAGGAGAGG 61.293 65.000 0.00 0.00 0.00 3.69
688 1179 2.997584 CGGTGGGAGGAGGAGAGGA 61.998 68.421 0.00 0.00 0.00 3.71
690 1181 2.443016 CCGGTGGGAGGAGGAGAG 60.443 72.222 0.00 0.00 34.06 3.20
691 1182 2.944954 TCCGGTGGGAGGAGGAGA 60.945 66.667 0.00 0.00 37.43 3.71
716 1207 1.733526 GAGGAAGGAGAGCTCGAGC 59.266 63.158 30.01 30.01 42.49 5.03
859 1354 0.442699 CTTGGCGCGTAGAAAGGAAC 59.557 55.000 8.43 0.00 0.00 3.62
869 1364 3.799755 GCGGAAATCTTGGCGCGT 61.800 61.111 8.43 0.00 0.00 6.01
873 1368 3.401243 CTGGCGCGGAAATCTTGGC 62.401 63.158 8.83 0.00 0.00 4.52
875 1370 0.734889 AATCTGGCGCGGAAATCTTG 59.265 50.000 8.83 0.00 0.00 3.02
876 1371 1.133025 CAAATCTGGCGCGGAAATCTT 59.867 47.619 8.83 0.00 0.00 2.40
877 1372 0.734889 CAAATCTGGCGCGGAAATCT 59.265 50.000 8.83 0.00 0.00 2.40
878 1373 0.248621 CCAAATCTGGCGCGGAAATC 60.249 55.000 8.83 0.00 35.39 2.17
879 1374 1.809207 CCAAATCTGGCGCGGAAAT 59.191 52.632 8.83 0.00 35.39 2.17
880 1375 3.273048 CCAAATCTGGCGCGGAAA 58.727 55.556 8.83 0.00 35.39 3.13
925 1420 2.776072 CAACGACACCGCGGATTC 59.224 61.111 35.90 24.87 39.95 2.52
932 1427 2.961522 ATTTTACAGCAACGACACCG 57.038 45.000 0.00 0.00 42.50 4.94
937 1432 3.316588 TGGCTCAAATTTTACAGCAACGA 59.683 39.130 13.11 0.00 33.22 3.85
938 1433 3.637432 TGGCTCAAATTTTACAGCAACG 58.363 40.909 13.11 0.00 33.22 4.10
967 1462 1.639298 CTGCCTACGCTTTCCTGCAC 61.639 60.000 0.00 0.00 35.36 4.57
1039 1548 2.502130 AGAAGGCCCAGAAGTTAGCTAC 59.498 50.000 0.00 0.00 0.00 3.58
1043 1552 3.703001 TTGAGAAGGCCCAGAAGTTAG 57.297 47.619 0.00 0.00 0.00 2.34
1075 1584 4.039245 TCAAGACTGACTAAGGTGGTTCAG 59.961 45.833 0.00 0.00 0.00 3.02
1104 1618 5.981315 TGCTACAATATCAAGTAACCGCTAC 59.019 40.000 0.00 0.00 0.00 3.58
1109 1623 5.123227 TGCCTGCTACAATATCAAGTAACC 58.877 41.667 0.00 0.00 0.00 2.85
1130 1652 8.250332 TCAAATTCCATATTAACCAACTCTTGC 58.750 33.333 0.00 0.00 0.00 4.01
1154 1676 3.426560 GCGTGAAGATGCATGTTTGATCA 60.427 43.478 10.81 1.08 33.89 2.92
1159 1681 1.246649 TGGCGTGAAGATGCATGTTT 58.753 45.000 10.81 1.49 35.60 2.83
1173 1695 2.100584 ACACAAAAACATGACATGGCGT 59.899 40.909 19.39 6.10 33.60 5.68
1176 1698 5.107824 TGACAACACAAAAACATGACATGG 58.892 37.500 19.39 3.94 33.60 3.66
1238 1760 2.291209 TGCCACCAATCACAGATTGT 57.709 45.000 16.04 4.64 0.00 2.71
1306 1828 2.124403 TCGGACGGAGGGAGTAGC 60.124 66.667 0.00 0.00 0.00 3.58
1350 1872 3.386063 TCCCTCCGTCCCACAATATAAA 58.614 45.455 0.00 0.00 0.00 1.40
1351 1873 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
1352 1874 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
1353 1875 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
1354 1876 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
1355 1877 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
1356 1878 0.901580 GTACTCCCTCCGTCCCACAA 60.902 60.000 0.00 0.00 0.00 3.33
1357 1879 1.304713 GTACTCCCTCCGTCCCACA 60.305 63.158 0.00 0.00 0.00 4.17
1358 1880 1.000107 AGTACTCCCTCCGTCCCAC 60.000 63.158 0.00 0.00 0.00 4.61
1364 1886 1.475682 GTGTAACCAGTACTCCCTCCG 59.524 57.143 0.00 0.00 33.46 4.63
1382 1904 2.934364 GCAGACCATTCAGACAGAGGTG 60.934 54.545 0.00 0.00 31.57 4.00
1416 1938 5.940470 ACATAATCTGAAGTTTGGAGTGACC 59.060 40.000 0.00 0.00 39.54 4.02
1418 1940 6.533730 ACACATAATCTGAAGTTTGGAGTGA 58.466 36.000 0.00 0.00 0.00 3.41
1464 1986 8.975295 CATGATCACATCCCTAATAGATAGTCA 58.025 37.037 0.00 0.00 34.15 3.41
1465 1987 8.976353 ACATGATCACATCCCTAATAGATAGTC 58.024 37.037 0.00 0.00 34.15 2.59
1468 1990 7.679881 ACCACATGATCACATCCCTAATAGATA 59.320 37.037 0.00 0.00 34.15 1.98
1471 1993 5.936372 CACCACATGATCACATCCCTAATAG 59.064 44.000 0.00 0.00 34.15 1.73
1472 1994 5.369404 ACACCACATGATCACATCCCTAATA 59.631 40.000 0.00 0.00 34.15 0.98
1474 1996 3.523157 ACACCACATGATCACATCCCTAA 59.477 43.478 0.00 0.00 34.15 2.69
1484 2108 7.391148 AGTTAACCATAAACACCACATGATC 57.609 36.000 0.00 0.00 0.00 2.92
1514 2138 9.548208 GATGTGAGTTCTTTAAGCATTTAAGTC 57.452 33.333 0.00 0.00 30.84 3.01
1541 2165 4.885907 CCAGCCATATCTTTCACAATCAGT 59.114 41.667 0.00 0.00 0.00 3.41
1542 2166 4.885907 ACCAGCCATATCTTTCACAATCAG 59.114 41.667 0.00 0.00 0.00 2.90
1543 2167 4.858850 ACCAGCCATATCTTTCACAATCA 58.141 39.130 0.00 0.00 0.00 2.57
1544 2168 5.841957 AACCAGCCATATCTTTCACAATC 57.158 39.130 0.00 0.00 0.00 2.67
1545 2169 6.438425 AGAAAACCAGCCATATCTTTCACAAT 59.562 34.615 0.00 0.00 0.00 2.71
1546 2170 5.774690 AGAAAACCAGCCATATCTTTCACAA 59.225 36.000 0.00 0.00 0.00 3.33
1547 2171 5.324409 AGAAAACCAGCCATATCTTTCACA 58.676 37.500 0.00 0.00 0.00 3.58
1548 2172 5.415701 TGAGAAAACCAGCCATATCTTTCAC 59.584 40.000 0.00 0.00 0.00 3.18
1549 2173 5.415701 GTGAGAAAACCAGCCATATCTTTCA 59.584 40.000 0.00 0.00 0.00 2.69
1550 2174 5.163612 GGTGAGAAAACCAGCCATATCTTTC 60.164 44.000 0.00 0.00 40.22 2.62
1551 2175 4.706962 GGTGAGAAAACCAGCCATATCTTT 59.293 41.667 0.00 0.00 40.22 2.52
1552 2176 4.263905 TGGTGAGAAAACCAGCCATATCTT 60.264 41.667 0.00 0.00 45.43 2.40
1553 2177 3.266772 TGGTGAGAAAACCAGCCATATCT 59.733 43.478 0.00 0.00 45.43 1.98
1554 2178 3.620488 TGGTGAGAAAACCAGCCATATC 58.380 45.455 0.00 0.00 45.43 1.63
1555 2179 3.737559 TGGTGAGAAAACCAGCCATAT 57.262 42.857 0.00 0.00 45.43 1.78
1566 2190 7.890127 ACCTGATCATTTTCTTATGGTGAGAAA 59.110 33.333 0.00 0.00 40.36 2.52
1567 2191 7.337689 CACCTGATCATTTTCTTATGGTGAGAA 59.662 37.037 16.11 0.00 43.39 2.87
1568 2192 6.825213 CACCTGATCATTTTCTTATGGTGAGA 59.175 38.462 16.11 0.00 43.39 3.27
1572 2196 6.078456 TCCACCTGATCATTTTCTTATGGT 57.922 37.500 0.00 0.00 0.00 3.55
1595 2219 6.859112 TTTGACTAGAGCTTCCAAGATACT 57.141 37.500 0.00 0.00 0.00 2.12
1596 2220 8.499403 AAATTTGACTAGAGCTTCCAAGATAC 57.501 34.615 0.00 0.00 0.00 2.24
1597 2221 9.167311 GAAAATTTGACTAGAGCTTCCAAGATA 57.833 33.333 0.00 0.00 0.00 1.98
1598 2222 7.887495 AGAAAATTTGACTAGAGCTTCCAAGAT 59.113 33.333 0.00 0.00 0.00 2.40
1599 2223 7.227156 AGAAAATTTGACTAGAGCTTCCAAGA 58.773 34.615 0.00 0.00 0.00 3.02
1600 2224 7.390162 AGAGAAAATTTGACTAGAGCTTCCAAG 59.610 37.037 0.00 0.00 0.00 3.61
1601 2225 7.227156 AGAGAAAATTTGACTAGAGCTTCCAA 58.773 34.615 0.00 0.00 0.00 3.53
1602 2226 6.773638 AGAGAAAATTTGACTAGAGCTTCCA 58.226 36.000 0.00 0.00 0.00 3.53
1605 2229 6.878389 CCAGAGAGAAAATTTGACTAGAGCTT 59.122 38.462 0.00 0.00 0.00 3.74
1607 2231 6.402222 TCCAGAGAGAAAATTTGACTAGAGC 58.598 40.000 0.00 0.00 0.00 4.09
1620 2252 7.006509 ACATTTCAAAGGAATCCAGAGAGAAA 58.993 34.615 0.61 5.12 31.93 2.52
1649 2281 4.178540 CTGGCCAAAAGAATATGCAACTG 58.821 43.478 7.01 0.00 0.00 3.16
1650 2282 3.834231 ACTGGCCAAAAGAATATGCAACT 59.166 39.130 7.01 0.00 0.00 3.16
1651 2283 3.928375 CACTGGCCAAAAGAATATGCAAC 59.072 43.478 7.01 0.00 0.00 4.17
1652 2284 3.831333 TCACTGGCCAAAAGAATATGCAA 59.169 39.130 7.01 0.00 0.00 4.08
1653 2285 3.429492 TCACTGGCCAAAAGAATATGCA 58.571 40.909 7.01 0.00 0.00 3.96
1654 2286 4.365723 CATCACTGGCCAAAAGAATATGC 58.634 43.478 7.01 0.00 0.00 3.14
1657 2289 3.700538 AGCATCACTGGCCAAAAGAATA 58.299 40.909 7.01 0.00 0.00 1.75
1658 2290 2.532843 AGCATCACTGGCCAAAAGAAT 58.467 42.857 7.01 0.00 0.00 2.40
1660 2292 1.999648 AAGCATCACTGGCCAAAAGA 58.000 45.000 7.01 5.28 0.00 2.52
1679 2311 9.299963 GTGTTTGCATCATGTTATTTTGCTATA 57.700 29.630 0.00 0.00 34.47 1.31
1680 2312 8.036575 AGTGTTTGCATCATGTTATTTTGCTAT 58.963 29.630 0.00 0.00 34.47 2.97
1708 2340 5.573282 CACGTCCAACTACATAGAACAAGAG 59.427 44.000 0.00 0.00 0.00 2.85
1714 2346 5.358725 TCATAGCACGTCCAACTACATAGAA 59.641 40.000 0.00 0.00 0.00 2.10
1775 2407 2.094417 GCCACTGTTTCAATAGACGAGC 59.906 50.000 0.00 0.00 0.00 5.03
1865 2497 4.825085 GGTTGGTTGGTTCTTATGACTGAA 59.175 41.667 0.00 0.00 0.00 3.02
2961 3757 2.887360 GCTTGCGCATCCACCATT 59.113 55.556 12.75 0.00 35.78 3.16
3048 3857 0.403271 AAGAGCTGTGCATCAGGGTT 59.597 50.000 15.16 0.00 43.78 4.11
3207 4018 4.630894 TTTGAGTGCTCACGACAAAAAT 57.369 36.364 18.01 0.00 39.66 1.82
3276 4087 5.180271 CAAACTGCCTAGTTAATACCGGAA 58.820 41.667 9.46 0.00 46.14 4.30
3287 4098 7.341445 TCAACAATTTAACAAACTGCCTAGT 57.659 32.000 0.00 0.00 39.32 2.57
3325 4136 4.492494 TCTCAGATCTTGGCAGCAATAA 57.508 40.909 0.00 0.00 0.00 1.40
3344 4155 5.876651 AGAAGCCAACCAAAGAAAAATCT 57.123 34.783 0.00 0.00 0.00 2.40
3361 4172 5.652452 ACCCCATTGTAGACAATTAAGAAGC 59.348 40.000 5.14 0.00 43.48 3.86
3362 4173 7.538575 CAACCCCATTGTAGACAATTAAGAAG 58.461 38.462 5.14 0.00 43.48 2.85
3363 4174 6.071616 GCAACCCCATTGTAGACAATTAAGAA 60.072 38.462 5.14 0.00 43.48 2.52
3364 4175 5.417580 GCAACCCCATTGTAGACAATTAAGA 59.582 40.000 5.14 0.00 43.48 2.10
3387 4198 4.210955 GCAAGTCACAGATATCTAGCTTGC 59.789 45.833 27.39 27.39 46.47 4.01
3411 4222 2.514803 AACCCCAAAGAATGGAGTTCG 58.485 47.619 0.00 0.00 46.28 3.95
3518 4334 6.065374 TGAGCAATTACCCTGTTAGTTTTGA 58.935 36.000 0.00 0.00 0.00 2.69
3572 4388 9.998106 TGTATTATATTTCTTTACAGAGGGAGC 57.002 33.333 0.00 0.00 0.00 4.70
3592 4408 9.381038 AGATAAGCAATTAGTCCCTCTGTATTA 57.619 33.333 0.00 0.00 0.00 0.98
3593 4409 8.268878 AGATAAGCAATTAGTCCCTCTGTATT 57.731 34.615 0.00 0.00 0.00 1.89
3594 4410 7.863901 AGATAAGCAATTAGTCCCTCTGTAT 57.136 36.000 0.00 0.00 0.00 2.29
3595 4411 8.777578 TTAGATAAGCAATTAGTCCCTCTGTA 57.222 34.615 0.00 0.00 0.00 2.74
3596 4412 7.676683 TTAGATAAGCAATTAGTCCCTCTGT 57.323 36.000 0.00 0.00 0.00 3.41
3597 4413 8.370940 TGATTAGATAAGCAATTAGTCCCTCTG 58.629 37.037 0.00 0.00 0.00 3.35
3598 4414 8.371699 GTGATTAGATAAGCAATTAGTCCCTCT 58.628 37.037 0.00 0.00 32.96 3.69
3599 4415 8.150945 TGTGATTAGATAAGCAATTAGTCCCTC 58.849 37.037 0.00 0.00 32.96 4.30
3600 4416 8.034313 TGTGATTAGATAAGCAATTAGTCCCT 57.966 34.615 0.00 0.00 32.96 4.20
3601 4417 8.150945 TCTGTGATTAGATAAGCAATTAGTCCC 58.849 37.037 0.00 0.00 32.96 4.46
3602 4418 9.717942 ATCTGTGATTAGATAAGCAATTAGTCC 57.282 33.333 0.00 0.00 35.70 3.85
3620 4436 7.009179 TCTCTACTTGGAAAACATCTGTGAT 57.991 36.000 0.00 0.00 0.00 3.06
3647 4463 2.695127 ACAGGAACACGTGTTACCAA 57.305 45.000 34.50 0.00 39.69 3.67
3666 4483 6.707440 TGTTCTAATTTGCTGAAACCAGAA 57.293 33.333 0.00 0.00 33.56 3.02
3683 4500 7.186570 TGTTCTCATCTGGATGAATGTTCTA 57.813 36.000 13.31 0.00 46.10 2.10
3731 4548 1.823899 CATAACCCGCTTGGCTCCC 60.824 63.158 0.00 0.00 37.83 4.30
3899 4716 3.002583 TGGACCTCGCTGCCATCA 61.003 61.111 0.00 0.00 0.00 3.07
3929 4746 0.179250 CCTTGTTGTTCACGATCGCG 60.179 55.000 16.60 5.75 44.79 5.87
3968 4791 1.423794 GGGGGACAGGACCAAAGACA 61.424 60.000 0.00 0.00 0.00 3.41
4025 4848 3.299503 TCATACTATGTGCTCAGCCAGA 58.700 45.455 0.00 0.00 0.00 3.86
4043 4866 2.302445 GGTCAGCAGATAGGCATCTCAT 59.698 50.000 0.00 0.00 39.62 2.90
4050 4873 2.896685 AGATACAGGTCAGCAGATAGGC 59.103 50.000 0.00 0.00 0.00 3.93
4051 4874 4.704540 CCTAGATACAGGTCAGCAGATAGG 59.295 50.000 0.00 0.00 0.00 2.57
4074 4897 4.335315 TGTCCATTTCATTCTGCGGAATAC 59.665 41.667 20.26 13.18 39.87 1.89
4116 4943 9.315525 GAGTAGTAATAGAGAACCAAAACATCC 57.684 37.037 0.00 0.00 0.00 3.51
4136 4963 5.763876 AAGCAAAGGTGGAATAGAGTAGT 57.236 39.130 0.00 0.00 0.00 2.73
4188 5015 2.232452 ACACTTCGGTTCCATCAGAGAG 59.768 50.000 0.00 0.00 0.00 3.20
4244 5071 4.322080 TGGTCAAGTCCTATAATGAGCG 57.678 45.455 0.00 0.00 41.80 5.03
4249 5076 7.390718 GTGTGAAGTTTGGTCAAGTCCTATAAT 59.609 37.037 0.00 0.00 0.00 1.28
4253 5080 4.448210 GTGTGAAGTTTGGTCAAGTCCTA 58.552 43.478 0.00 0.00 0.00 2.94
4259 5086 2.417239 GTGTCGTGTGAAGTTTGGTCAA 59.583 45.455 0.00 0.00 0.00 3.18
4269 5096 1.535226 CCACTCTTCGTGTCGTGTGAA 60.535 52.381 0.00 0.00 42.20 3.18
4272 5099 0.311165 CTCCACTCTTCGTGTCGTGT 59.689 55.000 0.00 0.00 42.20 4.49
4367 5212 1.287425 CAGGGAGATAAAACGACGCC 58.713 55.000 0.00 0.00 0.00 5.68
4426 5274 1.813513 AGAGACAGCCAAAACATCCG 58.186 50.000 0.00 0.00 0.00 4.18
4434 5282 2.057137 AAACAGCAAGAGACAGCCAA 57.943 45.000 0.00 0.00 0.00 4.52
4435 5283 1.677576 CAAAACAGCAAGAGACAGCCA 59.322 47.619 0.00 0.00 0.00 4.75
4436 5284 1.000938 CCAAAACAGCAAGAGACAGCC 60.001 52.381 0.00 0.00 0.00 4.85
4437 5285 1.678101 ACCAAAACAGCAAGAGACAGC 59.322 47.619 0.00 0.00 0.00 4.40
4438 5286 3.129287 ACAACCAAAACAGCAAGAGACAG 59.871 43.478 0.00 0.00 0.00 3.51
4439 5287 3.088532 ACAACCAAAACAGCAAGAGACA 58.911 40.909 0.00 0.00 0.00 3.41
4440 5288 3.378427 AGACAACCAAAACAGCAAGAGAC 59.622 43.478 0.00 0.00 0.00 3.36
4441 5289 3.620488 AGACAACCAAAACAGCAAGAGA 58.380 40.909 0.00 0.00 0.00 3.10
4442 5290 3.629398 AGAGACAACCAAAACAGCAAGAG 59.371 43.478 0.00 0.00 0.00 2.85
4443 5291 3.620488 AGAGACAACCAAAACAGCAAGA 58.380 40.909 0.00 0.00 0.00 3.02
4444 5292 4.107622 CAAGAGACAACCAAAACAGCAAG 58.892 43.478 0.00 0.00 0.00 4.01
4445 5293 3.675775 GCAAGAGACAACCAAAACAGCAA 60.676 43.478 0.00 0.00 0.00 3.91
4446 5294 2.159254 GCAAGAGACAACCAAAACAGCA 60.159 45.455 0.00 0.00 0.00 4.41
4447 5295 2.099756 AGCAAGAGACAACCAAAACAGC 59.900 45.455 0.00 0.00 0.00 4.40
4448 5296 3.129287 ACAGCAAGAGACAACCAAAACAG 59.871 43.478 0.00 0.00 0.00 3.16
4449 5297 3.088532 ACAGCAAGAGACAACCAAAACA 58.911 40.909 0.00 0.00 0.00 2.83
4450 5298 3.782889 ACAGCAAGAGACAACCAAAAC 57.217 42.857 0.00 0.00 0.00 2.43
4451 5299 3.119173 CCAACAGCAAGAGACAACCAAAA 60.119 43.478 0.00 0.00 0.00 2.44
4452 5300 2.426738 CCAACAGCAAGAGACAACCAAA 59.573 45.455 0.00 0.00 0.00 3.28
4514 5364 7.001073 AGGGCATATTCTCTTTTGGAATAGAC 58.999 38.462 0.00 0.00 38.51 2.59
4537 5388 1.620819 AGTCACTACAGCTTCACCAGG 59.379 52.381 0.00 0.00 0.00 4.45
4539 5390 1.270305 GCAGTCACTACAGCTTCACCA 60.270 52.381 0.00 0.00 35.39 4.17
4556 5412 6.203530 TGAACATAAAAGAACAGACTGAGCAG 59.796 38.462 10.08 0.00 0.00 4.24
4587 5450 7.329499 TGTTGTTGTTGTTGGAGTAACTAGTA 58.671 34.615 0.00 0.00 40.05 1.82
4588 5451 6.174760 TGTTGTTGTTGTTGGAGTAACTAGT 58.825 36.000 0.00 0.00 40.05 2.57
4589 5452 6.671614 TGTTGTTGTTGTTGGAGTAACTAG 57.328 37.500 0.00 0.00 40.05 2.57
4590 5453 6.430308 TGTTGTTGTTGTTGTTGGAGTAACTA 59.570 34.615 0.00 0.00 40.05 2.24
4591 5454 5.241949 TGTTGTTGTTGTTGTTGGAGTAACT 59.758 36.000 0.00 0.00 40.05 2.24
4592 5455 5.462405 TGTTGTTGTTGTTGTTGGAGTAAC 58.538 37.500 0.00 0.00 39.80 2.50
4593 5456 5.707242 TGTTGTTGTTGTTGTTGGAGTAA 57.293 34.783 0.00 0.00 0.00 2.24
4594 5457 5.009710 TGTTGTTGTTGTTGTTGTTGGAGTA 59.990 36.000 0.00 0.00 0.00 2.59
4595 5458 4.202161 TGTTGTTGTTGTTGTTGTTGGAGT 60.202 37.500 0.00 0.00 0.00 3.85
4596 5459 4.302455 TGTTGTTGTTGTTGTTGTTGGAG 58.698 39.130 0.00 0.00 0.00 3.86
4597 5460 4.322080 TGTTGTTGTTGTTGTTGTTGGA 57.678 36.364 0.00 0.00 0.00 3.53
4598 5461 4.271049 TGTTGTTGTTGTTGTTGTTGTTGG 59.729 37.500 0.00 0.00 0.00 3.77
4599 5462 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4600 5463 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
4601 5464 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
4602 5465 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
4603 5466 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
4604 5467 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
4605 5468 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
4606 5469 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
4607 5470 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
4608 5471 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
4609 5472 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
4610 5473 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
4611 5474 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
4612 5475 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
4613 5476 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
4614 5477 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
4615 5478 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
4616 5479 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
4617 5480 3.552890 GCTTGGGACTAAAGGCTTTGTTG 60.553 47.826 22.32 13.85 0.00 3.33
4618 5481 2.628178 GCTTGGGACTAAAGGCTTTGTT 59.372 45.455 22.32 8.73 0.00 2.83
4619 5482 2.239400 GCTTGGGACTAAAGGCTTTGT 58.761 47.619 22.32 16.86 0.00 2.83
4620 5483 2.238521 TGCTTGGGACTAAAGGCTTTG 58.761 47.619 22.32 13.97 0.00 2.77
4621 5484 2.675658 TGCTTGGGACTAAAGGCTTT 57.324 45.000 17.76 17.76 0.00 3.51
4622 5485 2.158460 ACTTGCTTGGGACTAAAGGCTT 60.158 45.455 0.00 0.00 0.00 4.35
4623 5486 1.425448 ACTTGCTTGGGACTAAAGGCT 59.575 47.619 0.00 0.00 0.00 4.58
4624 5487 1.911057 ACTTGCTTGGGACTAAAGGC 58.089 50.000 0.00 0.00 0.00 4.35
4625 5488 2.558359 CCAACTTGCTTGGGACTAAAGG 59.442 50.000 0.00 0.00 45.46 3.11
4626 5489 3.923017 CCAACTTGCTTGGGACTAAAG 57.077 47.619 0.00 0.00 45.46 1.85
4635 5498 0.251341 AGCCTACCCCAACTTGCTTG 60.251 55.000 0.00 0.00 0.00 4.01
4636 5499 1.282157 CTAGCCTACCCCAACTTGCTT 59.718 52.381 0.00 0.00 0.00 3.91
4637 5500 0.912486 CTAGCCTACCCCAACTTGCT 59.088 55.000 0.00 0.00 0.00 3.91
4638 5501 0.909623 TCTAGCCTACCCCAACTTGC 59.090 55.000 0.00 0.00 0.00 4.01
4639 5502 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
4640 5503 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
4641 5504 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
4642 5505 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
4643 5506 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
4644 5507 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
4645 5508 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
4646 5509 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
4647 5510 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
4648 5511 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
4649 5512 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
4650 5513 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
4651 5514 2.808906 AATGGGTTTCACCTCTAGCC 57.191 50.000 0.00 0.00 38.64 3.93
4652 5515 7.054751 AGTAATTAATGGGTTTCACCTCTAGC 58.945 38.462 0.00 0.00 38.64 3.42
4653 5516 9.765795 CTAGTAATTAATGGGTTTCACCTCTAG 57.234 37.037 0.00 0.00 38.64 2.43
4654 5517 9.275572 ACTAGTAATTAATGGGTTTCACCTCTA 57.724 33.333 0.00 0.00 38.64 2.43
4655 5518 8.159229 ACTAGTAATTAATGGGTTTCACCTCT 57.841 34.615 0.00 0.00 38.64 3.69
4656 5519 8.803397 AACTAGTAATTAATGGGTTTCACCTC 57.197 34.615 0.00 0.00 38.64 3.85
4657 5520 9.676861 GTAACTAGTAATTAATGGGTTTCACCT 57.323 33.333 0.00 0.00 38.64 4.00
4658 5521 9.676861 AGTAACTAGTAATTAATGGGTTTCACC 57.323 33.333 0.00 0.00 37.60 4.02
4660 5523 9.895138 GGAGTAACTAGTAATTAATGGGTTTCA 57.105 33.333 0.00 0.00 0.00 2.69
4661 5524 9.334947 GGGAGTAACTAGTAATTAATGGGTTTC 57.665 37.037 0.00 6.71 0.00 2.78
4662 5525 9.065722 AGGGAGTAACTAGTAATTAATGGGTTT 57.934 33.333 0.00 0.00 0.00 3.27
4663 5526 8.634188 AGGGAGTAACTAGTAATTAATGGGTT 57.366 34.615 0.00 6.36 0.00 4.11
4664 5527 7.291885 GGAGGGAGTAACTAGTAATTAATGGGT 59.708 40.741 0.00 0.00 0.00 4.51
4665 5528 7.525029 CGGAGGGAGTAACTAGTAATTAATGGG 60.525 44.444 0.00 0.00 0.00 4.00
4666 5529 7.015001 ACGGAGGGAGTAACTAGTAATTAATGG 59.985 40.741 0.00 0.00 0.00 3.16
4667 5530 7.949434 ACGGAGGGAGTAACTAGTAATTAATG 58.051 38.462 0.00 0.00 0.00 1.90
4668 5531 9.646522 TTACGGAGGGAGTAACTAGTAATTAAT 57.353 33.333 0.00 0.00 0.00 1.40
4669 5532 9.474313 TTTACGGAGGGAGTAACTAGTAATTAA 57.526 33.333 0.00 0.00 34.25 1.40
4670 5533 9.474313 TTTTACGGAGGGAGTAACTAGTAATTA 57.526 33.333 0.00 0.00 34.25 1.40
4671 5534 7.961326 TTTACGGAGGGAGTAACTAGTAATT 57.039 36.000 0.00 0.00 34.25 1.40
4672 5535 7.961326 TTTTACGGAGGGAGTAACTAGTAAT 57.039 36.000 0.00 0.00 34.25 1.89
4673 5536 7.775053 TTTTTACGGAGGGAGTAACTAGTAA 57.225 36.000 0.00 0.00 34.25 2.24
4734 5597 8.943002 CCCTCTGTAAACAAATATAAGAACGTT 58.057 33.333 0.00 0.00 0.00 3.99
4735 5598 8.316214 TCCCTCTGTAAACAAATATAAGAACGT 58.684 33.333 0.00 0.00 0.00 3.99
4736 5599 8.712285 TCCCTCTGTAAACAAATATAAGAACG 57.288 34.615 0.00 0.00 0.00 3.95
4737 5600 9.668497 ACTCCCTCTGTAAACAAATATAAGAAC 57.332 33.333 0.00 0.00 0.00 3.01
4743 5606 9.396022 CAATGTACTCCCTCTGTAAACAAATAT 57.604 33.333 0.00 0.00 0.00 1.28
4744 5607 7.335924 GCAATGTACTCCCTCTGTAAACAAATA 59.664 37.037 0.00 0.00 0.00 1.40
4745 5608 6.151144 GCAATGTACTCCCTCTGTAAACAAAT 59.849 38.462 0.00 0.00 0.00 2.32
4746 5609 5.472137 GCAATGTACTCCCTCTGTAAACAAA 59.528 40.000 0.00 0.00 0.00 2.83
4747 5610 5.001232 GCAATGTACTCCCTCTGTAAACAA 58.999 41.667 0.00 0.00 0.00 2.83
4748 5611 4.041075 TGCAATGTACTCCCTCTGTAAACA 59.959 41.667 0.00 0.00 0.00 2.83
4749 5612 4.575885 TGCAATGTACTCCCTCTGTAAAC 58.424 43.478 0.00 0.00 0.00 2.01
4750 5613 4.901197 TGCAATGTACTCCCTCTGTAAA 57.099 40.909 0.00 0.00 0.00 2.01
4751 5614 4.384098 CCATGCAATGTACTCCCTCTGTAA 60.384 45.833 0.00 0.00 44.81 2.41
4752 5615 3.134623 CCATGCAATGTACTCCCTCTGTA 59.865 47.826 0.00 0.00 44.81 2.74
4753 5616 2.092753 CCATGCAATGTACTCCCTCTGT 60.093 50.000 0.00 0.00 44.81 3.41
4754 5617 2.569059 CCATGCAATGTACTCCCTCTG 58.431 52.381 0.00 0.00 44.81 3.35
4755 5618 1.133976 GCCATGCAATGTACTCCCTCT 60.134 52.381 0.00 0.00 44.81 3.69
4756 5619 1.312815 GCCATGCAATGTACTCCCTC 58.687 55.000 0.00 0.00 44.81 4.30
4757 5620 0.625316 TGCCATGCAATGTACTCCCT 59.375 50.000 0.00 0.00 44.81 4.20
4758 5621 1.610522 GATGCCATGCAATGTACTCCC 59.389 52.381 0.00 0.00 44.81 4.30
4759 5622 2.579873 AGATGCCATGCAATGTACTCC 58.420 47.619 0.00 0.00 44.81 3.85
4760 5623 5.066375 TGTTAAGATGCCATGCAATGTACTC 59.934 40.000 0.00 0.00 44.81 2.59
4761 5624 4.949238 TGTTAAGATGCCATGCAATGTACT 59.051 37.500 0.00 0.00 44.81 2.73
4762 5625 5.247507 TGTTAAGATGCCATGCAATGTAC 57.752 39.130 0.00 0.00 44.81 2.90
4884 5758 8.684973 AAGAAGACAAATGTATGTACTCGTAC 57.315 34.615 0.35 0.35 36.79 3.67
4887 5761 8.708742 TGAAAAGAAGACAAATGTATGTACTCG 58.291 33.333 0.00 0.00 32.57 4.18
4941 5824 9.945904 GTTTACCCCCAAATAATGATTTTACAA 57.054 29.630 0.00 0.00 32.73 2.41
4952 5835 8.846423 ATATTCATGTGTTTACCCCCAAATAA 57.154 30.769 0.00 0.00 0.00 1.40
4955 5838 7.456269 AGAAATATTCATGTGTTTACCCCCAAA 59.544 33.333 0.00 0.00 0.00 3.28
5000 5887 8.833231 TTTTTAAATGTGTCAGTGTTCCAAAA 57.167 26.923 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.