Multiple sequence alignment - TraesCS2A01G545300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G545300 chr2A 100.000 4282 0 0 1 4282 754341652 754345933 0.000000e+00 7908.0
1 TraesCS2A01G545300 chr2A 86.298 759 48 15 3551 4280 308576272 308575541 0.000000e+00 774.0
2 TraesCS2A01G545300 chr2B 89.698 3281 293 26 396 3650 765049074 765052335 0.000000e+00 4145.0
3 TraesCS2A01G545300 chr2D 89.826 1435 141 3 1103 2535 622912414 622910983 0.000000e+00 1836.0
4 TraesCS2A01G545300 chr2D 84.594 727 91 8 2796 3504 622910978 622910255 0.000000e+00 702.0
5 TraesCS2A01G545300 chr2D 80.583 309 47 10 3498 3801 622905168 622904868 4.310000e-55 226.0
6 TraesCS2A01G545300 chr2D 87.059 85 11 0 4148 4232 622878385 622878301 3.520000e-16 97.1
7 TraesCS2A01G545300 chr3A 87.995 758 55 18 3551 4282 339109749 339109002 0.000000e+00 863.0
8 TraesCS2A01G545300 chr1B 91.275 298 13 8 3854 4149 647048369 647048655 1.120000e-105 394.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G545300 chr2A 754341652 754345933 4281 False 7908 7908 100.000 1 4282 1 chr2A.!!$F1 4281
1 TraesCS2A01G545300 chr2A 308575541 308576272 731 True 774 774 86.298 3551 4280 1 chr2A.!!$R1 729
2 TraesCS2A01G545300 chr2B 765049074 765052335 3261 False 4145 4145 89.698 396 3650 1 chr2B.!!$F1 3254
3 TraesCS2A01G545300 chr2D 622910255 622912414 2159 True 1269 1836 87.210 1103 3504 2 chr2D.!!$R3 2401
4 TraesCS2A01G545300 chr3A 339109002 339109749 747 True 863 863 87.995 3551 4282 1 chr3A.!!$R1 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 510 0.180406 CCCCGGTTATCACCCTCTTG 59.820 60.0 0.00 0.00 40.52 3.02 F
702 708 0.383949 GGACAGAGAGTGCTCGATCC 59.616 60.0 0.00 0.00 45.98 3.36 F
711 717 0.390340 GTGCTCGATCCACTGAAGCA 60.390 55.0 8.60 0.00 0.00 3.91 F
786 792 0.606673 GCTCCTGGAGTTGTTGGTCC 60.607 60.0 23.92 1.21 31.39 4.46 F
1953 1961 0.535102 AGCGACAAAACAGACCAGGG 60.535 55.0 0.00 0.00 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1491 1497 0.247460 GAAGGCCTCCACATTTTGCC 59.753 55.0 5.23 0.00 42.48 4.52 R
1919 1927 0.323302 TCGCTACAATCCACAAGGCA 59.677 50.0 0.00 0.00 33.74 4.75 R
1950 1958 0.389948 CACTTCTCTTTACGCGCCCT 60.390 55.0 5.73 0.00 0.00 5.19 R
2448 2456 0.753262 ATGTCCCGCAGCCTAGTTAG 59.247 55.0 0.00 0.00 0.00 2.34 R
3548 3574 0.379316 GTGTTCACGTTGGACCAACC 59.621 55.0 27.79 15.75 40.82 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.622004 GATTTAGGATCTTTTACATGCATGATG 57.378 33.333 32.75 16.02 38.15 3.07
28 29 8.523915 TTAGGATCTTTTACATGCATGATGTT 57.476 30.769 32.75 13.10 43.20 2.71
29 30 7.035840 AGGATCTTTTACATGCATGATGTTC 57.964 36.000 32.75 17.26 43.20 3.18
30 31 6.604396 AGGATCTTTTACATGCATGATGTTCA 59.396 34.615 32.75 12.41 43.20 3.18
31 32 7.123098 AGGATCTTTTACATGCATGATGTTCAA 59.877 33.333 32.75 14.12 43.20 2.69
32 33 7.760794 GGATCTTTTACATGCATGATGTTCAAA 59.239 33.333 32.75 17.71 43.20 2.69
33 34 9.309516 GATCTTTTACATGCATGATGTTCAAAT 57.690 29.630 32.75 14.94 43.20 2.32
34 35 9.661563 ATCTTTTACATGCATGATGTTCAAATT 57.338 25.926 32.75 8.94 43.20 1.82
35 36 9.491675 TCTTTTACATGCATGATGTTCAAATTT 57.508 25.926 32.75 8.41 43.20 1.82
37 38 9.880064 TTTTACATGCATGATGTTCAAATTTTG 57.120 25.926 32.75 2.59 43.20 2.44
38 39 8.604640 TTACATGCATGATGTTCAAATTTTGT 57.395 26.923 32.75 8.64 43.20 2.83
39 40 6.893759 ACATGCATGATGTTCAAATTTTGTG 58.106 32.000 32.75 1.41 43.20 3.33
40 41 6.706716 ACATGCATGATGTTCAAATTTTGTGA 59.293 30.769 32.75 0.00 43.20 3.58
41 42 7.226918 ACATGCATGATGTTCAAATTTTGTGAA 59.773 29.630 32.75 0.00 43.20 3.18
42 43 7.549615 TGCATGATGTTCAAATTTTGTGAAA 57.450 28.000 8.89 0.00 36.77 2.69
43 44 7.982224 TGCATGATGTTCAAATTTTGTGAAAA 58.018 26.923 8.89 0.00 36.77 2.29
44 45 8.622157 TGCATGATGTTCAAATTTTGTGAAAAT 58.378 25.926 8.89 0.00 42.62 1.82
58 59 9.719279 ATTTTGTGAAAATTACATTGCAAACAG 57.281 25.926 1.71 0.00 37.84 3.16
59 60 7.840342 TTGTGAAAATTACATTGCAAACAGT 57.160 28.000 1.71 5.48 0.00 3.55
60 61 8.932945 TTGTGAAAATTACATTGCAAACAGTA 57.067 26.923 1.71 4.41 0.00 2.74
61 62 9.539825 TTGTGAAAATTACATTGCAAACAGTAT 57.460 25.926 1.71 0.00 0.00 2.12
68 69 9.855021 AATTACATTGCAAACAGTATAAGTTCC 57.145 29.630 1.71 0.00 0.00 3.62
69 70 6.267496 ACATTGCAAACAGTATAAGTTCCC 57.733 37.500 1.71 0.00 0.00 3.97
70 71 6.010219 ACATTGCAAACAGTATAAGTTCCCT 58.990 36.000 1.71 0.00 0.00 4.20
71 72 6.493458 ACATTGCAAACAGTATAAGTTCCCTT 59.507 34.615 1.71 0.00 34.56 3.95
72 73 7.668052 ACATTGCAAACAGTATAAGTTCCCTTA 59.332 33.333 1.71 0.00 37.56 2.69
73 74 8.519526 CATTGCAAACAGTATAAGTTCCCTTAA 58.480 33.333 1.71 0.00 36.76 1.85
74 75 8.466617 TTGCAAACAGTATAAGTTCCCTTAAA 57.533 30.769 0.00 0.00 36.76 1.52
75 76 7.878036 TGCAAACAGTATAAGTTCCCTTAAAC 58.122 34.615 0.00 0.00 36.76 2.01
76 77 7.502895 TGCAAACAGTATAAGTTCCCTTAAACA 59.497 33.333 0.00 0.00 36.76 2.83
77 78 8.520351 GCAAACAGTATAAGTTCCCTTAAACAT 58.480 33.333 0.00 0.00 36.76 2.71
79 80 9.802039 AAACAGTATAAGTTCCCTTAAACATCA 57.198 29.630 0.00 0.00 36.76 3.07
80 81 9.975218 AACAGTATAAGTTCCCTTAAACATCAT 57.025 29.630 0.00 0.00 36.76 2.45
81 82 9.614792 ACAGTATAAGTTCCCTTAAACATCATC 57.385 33.333 0.00 0.00 36.76 2.92
82 83 9.613428 CAGTATAAGTTCCCTTAAACATCATCA 57.387 33.333 0.00 0.00 36.76 3.07
83 84 9.614792 AGTATAAGTTCCCTTAAACATCATCAC 57.385 33.333 0.00 0.00 36.76 3.06
84 85 9.391006 GTATAAGTTCCCTTAAACATCATCACA 57.609 33.333 0.00 0.00 36.76 3.58
85 86 8.877864 ATAAGTTCCCTTAAACATCATCACAA 57.122 30.769 0.00 0.00 36.76 3.33
86 87 7.781324 AAGTTCCCTTAAACATCATCACAAT 57.219 32.000 0.00 0.00 0.00 2.71
87 88 7.781324 AGTTCCCTTAAACATCATCACAATT 57.219 32.000 0.00 0.00 0.00 2.32
88 89 7.830739 AGTTCCCTTAAACATCATCACAATTC 58.169 34.615 0.00 0.00 0.00 2.17
89 90 6.773976 TCCCTTAAACATCATCACAATTCC 57.226 37.500 0.00 0.00 0.00 3.01
90 91 6.252233 TCCCTTAAACATCATCACAATTCCA 58.748 36.000 0.00 0.00 0.00 3.53
91 92 6.723515 TCCCTTAAACATCATCACAATTCCAA 59.276 34.615 0.00 0.00 0.00 3.53
92 93 6.813152 CCCTTAAACATCATCACAATTCCAAC 59.187 38.462 0.00 0.00 0.00 3.77
93 94 7.377398 CCTTAAACATCATCACAATTCCAACA 58.623 34.615 0.00 0.00 0.00 3.33
94 95 7.871973 CCTTAAACATCATCACAATTCCAACAA 59.128 33.333 0.00 0.00 0.00 2.83
95 96 9.258826 CTTAAACATCATCACAATTCCAACAAA 57.741 29.630 0.00 0.00 0.00 2.83
96 97 9.775854 TTAAACATCATCACAATTCCAACAAAT 57.224 25.926 0.00 0.00 0.00 2.32
98 99 8.991243 AACATCATCACAATTCCAACAAATAG 57.009 30.769 0.00 0.00 0.00 1.73
99 100 7.037438 ACATCATCACAATTCCAACAAATAGC 58.963 34.615 0.00 0.00 0.00 2.97
100 101 6.839124 TCATCACAATTCCAACAAATAGCT 57.161 33.333 0.00 0.00 0.00 3.32
101 102 6.855836 TCATCACAATTCCAACAAATAGCTC 58.144 36.000 0.00 0.00 0.00 4.09
102 103 6.660521 TCATCACAATTCCAACAAATAGCTCT 59.339 34.615 0.00 0.00 0.00 4.09
103 104 7.828717 TCATCACAATTCCAACAAATAGCTCTA 59.171 33.333 0.00 0.00 0.00 2.43
104 105 7.377766 TCACAATTCCAACAAATAGCTCTAC 57.622 36.000 0.00 0.00 0.00 2.59
105 106 6.939730 TCACAATTCCAACAAATAGCTCTACA 59.060 34.615 0.00 0.00 0.00 2.74
106 107 7.446931 TCACAATTCCAACAAATAGCTCTACAA 59.553 33.333 0.00 0.00 0.00 2.41
107 108 8.246180 CACAATTCCAACAAATAGCTCTACAAT 58.754 33.333 0.00 0.00 0.00 2.71
108 109 9.461312 ACAATTCCAACAAATAGCTCTACAATA 57.539 29.630 0.00 0.00 0.00 1.90
109 110 9.941664 CAATTCCAACAAATAGCTCTACAATAG 57.058 33.333 0.00 0.00 0.00 1.73
110 111 8.682936 ATTCCAACAAATAGCTCTACAATAGG 57.317 34.615 0.00 0.00 0.00 2.57
111 112 6.055588 TCCAACAAATAGCTCTACAATAGGC 58.944 40.000 0.00 0.00 0.00 3.93
112 113 6.058183 CCAACAAATAGCTCTACAATAGGCT 58.942 40.000 0.00 0.00 36.64 4.58
113 114 6.543831 CCAACAAATAGCTCTACAATAGGCTT 59.456 38.462 0.00 0.00 35.16 4.35
114 115 7.067494 CCAACAAATAGCTCTACAATAGGCTTT 59.933 37.037 0.00 0.00 35.16 3.51
115 116 9.109393 CAACAAATAGCTCTACAATAGGCTTTA 57.891 33.333 0.00 0.00 35.16 1.85
116 117 9.681062 AACAAATAGCTCTACAATAGGCTTTAA 57.319 29.630 0.00 0.00 35.16 1.52
117 118 9.331282 ACAAATAGCTCTACAATAGGCTTTAAG 57.669 33.333 0.00 0.00 35.16 1.85
118 119 9.331282 CAAATAGCTCTACAATAGGCTTTAAGT 57.669 33.333 0.00 0.00 35.16 2.24
119 120 9.907229 AAATAGCTCTACAATAGGCTTTAAGTT 57.093 29.630 0.00 0.00 35.16 2.66
120 121 8.894768 ATAGCTCTACAATAGGCTTTAAGTTG 57.105 34.615 0.00 0.00 35.16 3.16
121 122 6.712276 AGCTCTACAATAGGCTTTAAGTTGT 58.288 36.000 0.00 4.54 36.94 3.32
122 123 7.848128 AGCTCTACAATAGGCTTTAAGTTGTA 58.152 34.615 0.00 5.99 35.01 2.41
123 124 7.982354 AGCTCTACAATAGGCTTTAAGTTGTAG 59.018 37.037 18.86 18.86 46.76 2.74
128 129 8.494016 ACAATAGGCTTTAAGTTGTAGACATC 57.506 34.615 0.00 0.00 31.79 3.06
129 130 8.100791 ACAATAGGCTTTAAGTTGTAGACATCA 58.899 33.333 0.00 0.00 31.79 3.07
130 131 8.391106 CAATAGGCTTTAAGTTGTAGACATCAC 58.609 37.037 0.00 0.00 0.00 3.06
131 132 5.246307 AGGCTTTAAGTTGTAGACATCACC 58.754 41.667 0.00 0.00 0.00 4.02
132 133 4.395231 GGCTTTAAGTTGTAGACATCACCC 59.605 45.833 0.00 0.00 0.00 4.61
133 134 4.395231 GCTTTAAGTTGTAGACATCACCCC 59.605 45.833 0.00 0.00 0.00 4.95
134 135 5.803470 GCTTTAAGTTGTAGACATCACCCCT 60.803 44.000 0.00 0.00 0.00 4.79
135 136 3.703001 AAGTTGTAGACATCACCCCTG 57.297 47.619 0.00 0.00 0.00 4.45
136 137 2.621070 AGTTGTAGACATCACCCCTGT 58.379 47.619 0.00 0.00 0.00 4.00
137 138 2.567615 AGTTGTAGACATCACCCCTGTC 59.432 50.000 0.00 0.00 42.68 3.51
138 139 1.568504 TGTAGACATCACCCCTGTCC 58.431 55.000 0.10 0.00 43.24 4.02
139 140 0.831307 GTAGACATCACCCCTGTCCC 59.169 60.000 0.10 0.00 43.24 4.46
140 141 0.716591 TAGACATCACCCCTGTCCCT 59.283 55.000 0.10 0.00 43.24 4.20
141 142 0.716591 AGACATCACCCCTGTCCCTA 59.283 55.000 0.10 0.00 43.24 3.53
142 143 1.295292 AGACATCACCCCTGTCCCTAT 59.705 52.381 0.10 0.00 43.24 2.57
143 144 2.522705 AGACATCACCCCTGTCCCTATA 59.477 50.000 0.10 0.00 43.24 1.31
144 145 3.144894 AGACATCACCCCTGTCCCTATAT 59.855 47.826 0.10 0.00 43.24 0.86
145 146 3.515901 GACATCACCCCTGTCCCTATATC 59.484 52.174 0.00 0.00 37.61 1.63
146 147 3.116356 ACATCACCCCTGTCCCTATATCA 60.116 47.826 0.00 0.00 0.00 2.15
147 148 3.717507 TCACCCCTGTCCCTATATCAA 57.282 47.619 0.00 0.00 0.00 2.57
148 149 4.228237 TCACCCCTGTCCCTATATCAAT 57.772 45.455 0.00 0.00 0.00 2.57
149 150 5.363124 TCACCCCTGTCCCTATATCAATA 57.637 43.478 0.00 0.00 0.00 1.90
150 151 5.091552 TCACCCCTGTCCCTATATCAATAC 58.908 45.833 0.00 0.00 0.00 1.89
151 152 5.094387 CACCCCTGTCCCTATATCAATACT 58.906 45.833 0.00 0.00 0.00 2.12
152 153 6.047479 TCACCCCTGTCCCTATATCAATACTA 59.953 42.308 0.00 0.00 0.00 1.82
153 154 6.903534 CACCCCTGTCCCTATATCAATACTAT 59.096 42.308 0.00 0.00 0.00 2.12
154 155 8.065627 CACCCCTGTCCCTATATCAATACTATA 58.934 40.741 0.00 0.00 0.00 1.31
155 156 8.812645 ACCCCTGTCCCTATATCAATACTATAT 58.187 37.037 0.00 0.00 0.00 0.86
156 157 9.094578 CCCCTGTCCCTATATCAATACTATATG 57.905 40.741 0.00 0.00 0.00 1.78
157 158 9.094578 CCCTGTCCCTATATCAATACTATATGG 57.905 40.741 0.00 0.00 0.00 2.74
158 159 9.883293 CCTGTCCCTATATCAATACTATATGGA 57.117 37.037 0.00 0.00 0.00 3.41
160 161 9.368416 TGTCCCTATATCAATACTATATGGAGC 57.632 37.037 0.00 0.00 30.93 4.70
161 162 9.368416 GTCCCTATATCAATACTATATGGAGCA 57.632 37.037 0.00 0.00 30.93 4.26
181 182 9.241919 TGGAGCATATTTATTTTGAGACTTTGA 57.758 29.630 0.00 0.00 0.00 2.69
182 183 9.727627 GGAGCATATTTATTTTGAGACTTTGAG 57.272 33.333 0.00 0.00 0.00 3.02
189 190 5.597813 ATTTTGAGACTTTGAGTAGTGCG 57.402 39.130 0.00 0.00 0.00 5.34
190 191 4.316205 TTTGAGACTTTGAGTAGTGCGA 57.684 40.909 0.00 0.00 0.00 5.10
191 192 4.316205 TTGAGACTTTGAGTAGTGCGAA 57.684 40.909 0.00 0.00 0.00 4.70
192 193 4.521130 TGAGACTTTGAGTAGTGCGAAT 57.479 40.909 0.00 0.00 0.00 3.34
193 194 4.237724 TGAGACTTTGAGTAGTGCGAATG 58.762 43.478 0.00 0.00 0.00 2.67
194 195 3.589988 AGACTTTGAGTAGTGCGAATGG 58.410 45.455 0.00 0.00 0.00 3.16
195 196 2.076863 ACTTTGAGTAGTGCGAATGGC 58.923 47.619 0.00 0.00 43.96 4.40
196 197 1.398390 CTTTGAGTAGTGCGAATGGCC 59.602 52.381 0.00 0.00 42.61 5.36
197 198 0.392461 TTGAGTAGTGCGAATGGCCC 60.392 55.000 0.00 0.00 42.61 5.80
198 199 1.264749 TGAGTAGTGCGAATGGCCCT 61.265 55.000 0.00 0.00 42.61 5.19
199 200 0.530870 GAGTAGTGCGAATGGCCCTC 60.531 60.000 0.00 0.00 42.61 4.30
200 201 1.523938 GTAGTGCGAATGGCCCTCC 60.524 63.158 0.00 0.00 42.61 4.30
201 202 1.689233 TAGTGCGAATGGCCCTCCT 60.689 57.895 0.00 0.00 42.61 3.69
202 203 1.686325 TAGTGCGAATGGCCCTCCTC 61.686 60.000 0.00 0.00 42.61 3.71
203 204 2.688666 TGCGAATGGCCCTCCTCT 60.689 61.111 0.00 0.00 42.61 3.69
204 205 1.382557 TGCGAATGGCCCTCCTCTA 60.383 57.895 0.00 0.00 42.61 2.43
205 206 0.764369 TGCGAATGGCCCTCCTCTAT 60.764 55.000 0.00 0.00 42.61 1.98
206 207 1.267121 GCGAATGGCCCTCCTCTATA 58.733 55.000 0.00 0.00 34.80 1.31
207 208 1.205893 GCGAATGGCCCTCCTCTATAG 59.794 57.143 0.00 0.00 34.80 1.31
208 209 2.530701 CGAATGGCCCTCCTCTATAGT 58.469 52.381 0.00 0.00 0.00 2.12
209 210 2.900546 CGAATGGCCCTCCTCTATAGTT 59.099 50.000 0.00 0.00 0.00 2.24
210 211 3.056465 CGAATGGCCCTCCTCTATAGTTC 60.056 52.174 0.00 0.00 0.00 3.01
211 212 3.933239 ATGGCCCTCCTCTATAGTTCT 57.067 47.619 0.00 0.00 0.00 3.01
212 213 5.334421 GAATGGCCCTCCTCTATAGTTCTA 58.666 45.833 0.00 0.00 0.00 2.10
213 214 5.560467 ATGGCCCTCCTCTATAGTTCTAT 57.440 43.478 0.00 0.00 0.00 1.98
214 215 6.676164 ATGGCCCTCCTCTATAGTTCTATA 57.324 41.667 0.00 0.56 0.00 1.31
215 216 6.676164 TGGCCCTCCTCTATAGTTCTATAT 57.324 41.667 0.00 0.00 0.00 0.86
216 217 6.436027 TGGCCCTCCTCTATAGTTCTATATG 58.564 44.000 0.00 0.00 0.00 1.78
217 218 6.010650 TGGCCCTCCTCTATAGTTCTATATGT 60.011 42.308 0.00 0.00 0.00 2.29
218 219 7.185856 TGGCCCTCCTCTATAGTTCTATATGTA 59.814 40.741 0.00 0.00 0.00 2.29
219 220 7.722285 GGCCCTCCTCTATAGTTCTATATGTAG 59.278 44.444 0.00 0.00 0.00 2.74
220 221 7.722285 GCCCTCCTCTATAGTTCTATATGTAGG 59.278 44.444 0.00 12.15 0.00 3.18
221 222 7.722285 CCCTCCTCTATAGTTCTATATGTAGGC 59.278 44.444 0.00 0.00 0.00 3.93
222 223 7.442969 CCTCCTCTATAGTTCTATATGTAGGCG 59.557 44.444 0.00 9.59 0.00 5.52
223 224 8.087303 TCCTCTATAGTTCTATATGTAGGCGA 57.913 38.462 0.00 2.79 0.00 5.54
224 225 8.546322 TCCTCTATAGTTCTATATGTAGGCGAA 58.454 37.037 0.00 0.00 0.00 4.70
225 226 9.175312 CCTCTATAGTTCTATATGTAGGCGAAA 57.825 37.037 0.00 0.00 0.00 3.46
227 228 9.955102 TCTATAGTTCTATATGTAGGCGAAAGA 57.045 33.333 0.00 0.00 0.00 2.52
230 231 9.915629 ATAGTTCTATATGTAGGCGAAAGAAAG 57.084 33.333 0.00 0.00 0.00 2.62
231 232 8.008513 AGTTCTATATGTAGGCGAAAGAAAGA 57.991 34.615 0.00 0.00 0.00 2.52
232 233 7.921745 AGTTCTATATGTAGGCGAAAGAAAGAC 59.078 37.037 0.00 0.00 0.00 3.01
233 234 7.342769 TCTATATGTAGGCGAAAGAAAGACA 57.657 36.000 0.00 0.00 0.00 3.41
234 235 7.201145 TCTATATGTAGGCGAAAGAAAGACAC 58.799 38.462 0.00 0.00 0.00 3.67
235 236 3.462483 TGTAGGCGAAAGAAAGACACA 57.538 42.857 0.00 0.00 0.00 3.72
236 237 3.128349 TGTAGGCGAAAGAAAGACACAC 58.872 45.455 0.00 0.00 0.00 3.82
237 238 2.622064 AGGCGAAAGAAAGACACACT 57.378 45.000 0.00 0.00 0.00 3.55
238 239 2.919228 AGGCGAAAGAAAGACACACTT 58.081 42.857 0.00 0.00 40.98 3.16
239 240 2.614057 AGGCGAAAGAAAGACACACTTG 59.386 45.455 0.00 0.00 38.98 3.16
240 241 2.376032 GCGAAAGAAAGACACACTTGC 58.624 47.619 0.00 0.00 38.98 4.01
241 242 2.032178 GCGAAAGAAAGACACACTTGCT 59.968 45.455 0.00 0.00 45.71 3.91
247 248 4.986622 AGAAAGACACACTTGCTTTGTTC 58.013 39.130 0.00 0.00 41.39 3.18
248 249 3.782889 AAGACACACTTGCTTTGTTCC 57.217 42.857 0.00 0.00 37.45 3.62
249 250 3.004752 AGACACACTTGCTTTGTTCCT 57.995 42.857 0.00 0.00 0.00 3.36
250 251 2.684881 AGACACACTTGCTTTGTTCCTG 59.315 45.455 0.00 0.00 0.00 3.86
251 252 2.682856 GACACACTTGCTTTGTTCCTGA 59.317 45.455 0.00 0.00 0.00 3.86
252 253 3.088532 ACACACTTGCTTTGTTCCTGAA 58.911 40.909 0.00 0.00 0.00 3.02
253 254 3.129287 ACACACTTGCTTTGTTCCTGAAG 59.871 43.478 0.00 0.00 0.00 3.02
254 255 2.099756 ACACTTGCTTTGTTCCTGAAGC 59.900 45.455 1.38 1.38 46.42 3.86
258 259 2.695613 GCTTTGTTCCTGAAGCAGAC 57.304 50.000 3.43 0.00 45.74 3.51
259 260 1.949525 GCTTTGTTCCTGAAGCAGACA 59.050 47.619 3.43 0.00 45.74 3.41
260 261 2.358898 GCTTTGTTCCTGAAGCAGACAA 59.641 45.455 3.43 0.00 45.74 3.18
261 262 3.793465 GCTTTGTTCCTGAAGCAGACAAC 60.793 47.826 3.43 0.00 45.74 3.32
262 263 2.708216 TGTTCCTGAAGCAGACAACA 57.292 45.000 0.00 0.00 34.25 3.33
263 264 2.997980 TGTTCCTGAAGCAGACAACAA 58.002 42.857 0.00 0.00 33.96 2.83
264 265 3.351740 TGTTCCTGAAGCAGACAACAAA 58.648 40.909 0.00 0.00 33.96 2.83
265 266 3.953612 TGTTCCTGAAGCAGACAACAAAT 59.046 39.130 0.00 0.00 33.96 2.32
266 267 4.402155 TGTTCCTGAAGCAGACAACAAATT 59.598 37.500 0.00 0.00 33.96 1.82
267 268 5.105392 TGTTCCTGAAGCAGACAACAAATTT 60.105 36.000 0.00 0.00 33.96 1.82
268 269 5.596836 TCCTGAAGCAGACAACAAATTTT 57.403 34.783 0.00 0.00 32.44 1.82
269 270 6.707440 TCCTGAAGCAGACAACAAATTTTA 57.293 33.333 0.00 0.00 32.44 1.52
270 271 7.288810 TCCTGAAGCAGACAACAAATTTTAT 57.711 32.000 0.00 0.00 32.44 1.40
271 272 7.147312 TCCTGAAGCAGACAACAAATTTTATG 58.853 34.615 0.00 0.00 32.44 1.90
272 273 7.014134 TCCTGAAGCAGACAACAAATTTTATGA 59.986 33.333 6.91 0.00 32.44 2.15
273 274 7.327761 CCTGAAGCAGACAACAAATTTTATGAG 59.672 37.037 6.91 0.00 32.44 2.90
274 275 7.939782 TGAAGCAGACAACAAATTTTATGAGA 58.060 30.769 6.91 0.00 0.00 3.27
275 276 8.579006 TGAAGCAGACAACAAATTTTATGAGAT 58.421 29.630 6.91 0.00 0.00 2.75
278 279 9.453572 AGCAGACAACAAATTTTATGAGATAGA 57.546 29.630 6.91 0.00 0.00 1.98
298 299 9.347240 AGATAGATATTGCATGTATATTTGGCC 57.653 33.333 0.00 0.00 0.00 5.36
299 300 9.123902 GATAGATATTGCATGTATATTTGGCCA 57.876 33.333 0.00 0.00 0.00 5.36
300 301 7.779754 AGATATTGCATGTATATTTGGCCAA 57.220 32.000 16.05 16.05 0.00 4.52
301 302 8.370266 AGATATTGCATGTATATTTGGCCAAT 57.630 30.769 21.26 12.07 0.00 3.16
302 303 8.255206 AGATATTGCATGTATATTTGGCCAATG 58.745 33.333 21.26 13.81 0.00 2.82
303 304 3.992643 TGCATGTATATTTGGCCAATGC 58.007 40.909 24.47 24.47 0.00 3.56
320 321 7.761651 GCCAATGCCTATTTTTCTAAGAAAG 57.238 36.000 0.00 0.00 0.00 2.62
321 322 6.256539 GCCAATGCCTATTTTTCTAAGAAAGC 59.743 38.462 0.00 0.00 0.00 3.51
322 323 7.322664 CCAATGCCTATTTTTCTAAGAAAGCA 58.677 34.615 0.00 0.00 0.00 3.91
323 324 7.818930 CCAATGCCTATTTTTCTAAGAAAGCAA 59.181 33.333 0.00 0.00 0.00 3.91
324 325 8.650714 CAATGCCTATTTTTCTAAGAAAGCAAC 58.349 33.333 0.00 0.00 0.00 4.17
325 326 6.687604 TGCCTATTTTTCTAAGAAAGCAACC 58.312 36.000 0.00 0.00 0.00 3.77
326 327 6.266558 TGCCTATTTTTCTAAGAAAGCAACCA 59.733 34.615 0.00 0.00 0.00 3.67
327 328 6.808704 GCCTATTTTTCTAAGAAAGCAACCAG 59.191 38.462 0.00 0.00 0.00 4.00
328 329 7.309194 GCCTATTTTTCTAAGAAAGCAACCAGA 60.309 37.037 0.00 0.00 0.00 3.86
329 330 8.239998 CCTATTTTTCTAAGAAAGCAACCAGAG 58.760 37.037 0.00 0.00 0.00 3.35
330 331 7.823745 ATTTTTCTAAGAAAGCAACCAGAGA 57.176 32.000 0.00 0.00 0.00 3.10
331 332 7.823745 TTTTTCTAAGAAAGCAACCAGAGAT 57.176 32.000 0.00 0.00 0.00 2.75
332 333 8.918202 TTTTTCTAAGAAAGCAACCAGAGATA 57.082 30.769 0.00 0.00 0.00 1.98
333 334 8.918202 TTTTCTAAGAAAGCAACCAGAGATAA 57.082 30.769 0.00 0.00 0.00 1.75
334 335 9.520515 TTTTCTAAGAAAGCAACCAGAGATAAT 57.479 29.630 0.00 0.00 0.00 1.28
340 341 9.905713 AAGAAAGCAACCAGAGATAATATACAA 57.094 29.630 0.00 0.00 0.00 2.41
341 342 9.905713 AGAAAGCAACCAGAGATAATATACAAA 57.094 29.630 0.00 0.00 0.00 2.83
366 367 7.843490 TTTAGATGATTTTACCAGTTCTCCG 57.157 36.000 0.00 0.00 0.00 4.63
367 368 5.422214 AGATGATTTTACCAGTTCTCCGT 57.578 39.130 0.00 0.00 0.00 4.69
368 369 5.178797 AGATGATTTTACCAGTTCTCCGTG 58.821 41.667 0.00 0.00 0.00 4.94
369 370 3.071479 TGATTTTACCAGTTCTCCGTGC 58.929 45.455 0.00 0.00 0.00 5.34
370 371 2.922740 TTTTACCAGTTCTCCGTGCT 57.077 45.000 0.00 0.00 0.00 4.40
371 372 2.922740 TTTACCAGTTCTCCGTGCTT 57.077 45.000 0.00 0.00 0.00 3.91
372 373 2.450609 TTACCAGTTCTCCGTGCTTC 57.549 50.000 0.00 0.00 0.00 3.86
373 374 1.334160 TACCAGTTCTCCGTGCTTCA 58.666 50.000 0.00 0.00 0.00 3.02
374 375 0.468226 ACCAGTTCTCCGTGCTTCAA 59.532 50.000 0.00 0.00 0.00 2.69
375 376 1.134220 ACCAGTTCTCCGTGCTTCAAA 60.134 47.619 0.00 0.00 0.00 2.69
376 377 2.154462 CCAGTTCTCCGTGCTTCAAAT 58.846 47.619 0.00 0.00 0.00 2.32
377 378 2.160417 CCAGTTCTCCGTGCTTCAAATC 59.840 50.000 0.00 0.00 0.00 2.17
378 379 2.807967 CAGTTCTCCGTGCTTCAAATCA 59.192 45.455 0.00 0.00 0.00 2.57
379 380 3.250762 CAGTTCTCCGTGCTTCAAATCAA 59.749 43.478 0.00 0.00 0.00 2.57
380 381 3.499918 AGTTCTCCGTGCTTCAAATCAAG 59.500 43.478 0.00 0.00 0.00 3.02
394 395 9.070149 GCTTCAAATCAAGCTTACTTAAATCTG 57.930 33.333 0.00 0.00 44.71 2.90
397 398 9.733556 TCAAATCAAGCTTACTTAAATCTGGTA 57.266 29.630 0.00 0.00 33.74 3.25
406 407 9.999009 GCTTACTTAAATCTGGTACAATTTACC 57.001 33.333 0.00 8.89 38.70 2.85
429 430 8.625467 ACCTAAATAAATCTAGTCCCAACTCT 57.375 34.615 0.00 0.00 36.92 3.24
464 466 6.687604 ACACCTTCATTTAATTGTTACAGCC 58.312 36.000 0.00 0.00 0.00 4.85
494 496 0.535102 GATTGGCATACTCACCCCGG 60.535 60.000 0.00 0.00 0.00 5.73
496 498 1.493854 TTGGCATACTCACCCCGGTT 61.494 55.000 0.00 0.00 0.00 4.44
497 499 0.618107 TGGCATACTCACCCCGGTTA 60.618 55.000 0.00 0.00 0.00 2.85
498 500 0.763035 GGCATACTCACCCCGGTTAT 59.237 55.000 0.00 0.00 0.00 1.89
499 501 1.270678 GGCATACTCACCCCGGTTATC 60.271 57.143 0.00 0.00 0.00 1.75
506 508 0.981277 CACCCCGGTTATCACCCTCT 60.981 60.000 0.00 0.00 40.52 3.69
508 510 0.180406 CCCCGGTTATCACCCTCTTG 59.820 60.000 0.00 0.00 40.52 3.02
529 531 3.589735 TGGTAAAAGAGTTATGGGAGCCA 59.410 43.478 0.00 0.00 38.19 4.75
575 577 3.152341 CTGAAGCCTGAAACCAATGTCT 58.848 45.455 0.00 0.00 0.00 3.41
576 578 2.886523 TGAAGCCTGAAACCAATGTCTG 59.113 45.455 0.00 0.00 0.00 3.51
577 579 1.251251 AGCCTGAAACCAATGTCTGC 58.749 50.000 0.00 0.00 0.00 4.26
586 588 3.354948 ACCAATGTCTGCAATCTAGCA 57.645 42.857 0.00 0.00 43.35 3.49
628 630 5.930135 AGGAACTCCATACATACCATTGAC 58.070 41.667 0.00 0.00 38.89 3.18
632 634 4.039245 ACTCCATACATACCATTGACGAGG 59.961 45.833 0.00 0.00 0.00 4.63
637 639 2.146342 CATACCATTGACGAGGCCATC 58.854 52.381 5.01 0.00 0.00 3.51
648 650 0.464554 GAGGCCATCCAGTTAGGTGC 60.465 60.000 5.01 0.00 39.02 5.01
649 651 1.453928 GGCCATCCAGTTAGGTGCC 60.454 63.158 0.00 0.00 39.27 5.01
667 673 1.986882 CCAAGGCAAGAGACCAAAGT 58.013 50.000 0.00 0.00 0.00 2.66
680 686 7.787725 AGAGACCAAAGTTACAAGTAACAAG 57.212 36.000 21.26 11.98 45.79 3.16
698 704 1.214062 GGTGGACAGAGAGTGCTCG 59.786 63.158 0.00 0.00 45.98 5.03
699 705 1.244697 GGTGGACAGAGAGTGCTCGA 61.245 60.000 0.00 0.00 45.98 4.04
702 708 0.383949 GGACAGAGAGTGCTCGATCC 59.616 60.000 0.00 0.00 45.98 3.36
704 710 0.814457 ACAGAGAGTGCTCGATCCAC 59.186 55.000 7.96 7.96 45.98 4.02
711 717 0.390340 GTGCTCGATCCACTGAAGCA 60.390 55.000 8.60 0.00 0.00 3.91
739 745 4.625972 TGCAACATCAGCAATGAGTATG 57.374 40.909 6.14 0.00 39.39 2.39
763 769 5.380043 AGGCAAGGACCATACATATCTTTG 58.620 41.667 0.00 0.00 33.77 2.77
786 792 0.606673 GCTCCTGGAGTTGTTGGTCC 60.607 60.000 23.92 1.21 31.39 4.46
822 828 3.429881 GCAAATCTGCTGCAAAGGTTAAC 59.570 43.478 3.02 0.00 45.74 2.01
823 829 4.619973 CAAATCTGCTGCAAAGGTTAACA 58.380 39.130 8.10 0.00 0.00 2.41
1047 1053 8.837389 ACTCTCCTTAAACAAATCAACAACTAC 58.163 33.333 0.00 0.00 0.00 2.73
1066 1072 5.954757 ACTACTATAGCTCTGAAAGGCCTA 58.045 41.667 5.16 0.00 31.60 3.93
1081 1087 6.427853 TGAAAGGCCTATATTTGATCATGTCG 59.572 38.462 5.16 0.00 0.00 4.35
1083 1089 5.869579 AGGCCTATATTTGATCATGTCGTT 58.130 37.500 1.29 0.00 0.00 3.85
1157 1163 2.009681 TCTGGACTAGGACTGTTGCA 57.990 50.000 0.00 0.00 0.00 4.08
1215 1221 8.787852 AGAGCTATTTTCAACTTTTTACAGGAG 58.212 33.333 0.00 0.00 0.00 3.69
1324 1330 4.036852 GCCTTCCAAATAGCCAGATTGTAC 59.963 45.833 0.00 0.00 0.00 2.90
1350 1356 3.498018 TCACAACACGATCTTTGGATGTG 59.502 43.478 17.34 17.34 37.31 3.21
1399 1405 8.761575 AAATGTTATACACTTGAAATGCTTGG 57.238 30.769 0.00 0.00 0.00 3.61
1413 1419 6.378848 TGAAATGCTTGGATTCTGATCATTCA 59.621 34.615 0.00 0.00 33.77 2.57
1431 1437 5.243507 TCATTCATGGCAGCTGTTTAAAGAA 59.756 36.000 16.64 12.29 0.00 2.52
1463 1469 4.019051 TGGAAGAAAGATGGAAGATGCTCA 60.019 41.667 0.00 0.00 0.00 4.26
1467 1473 6.696441 AGAAAGATGGAAGATGCTCAAATC 57.304 37.500 0.00 0.00 0.00 2.17
1476 1482 1.612463 GATGCTCAAATCAGGGGATGC 59.388 52.381 0.00 0.00 32.92 3.91
1506 1512 2.125952 GCGGCAAAATGTGGAGGC 60.126 61.111 0.00 0.00 0.00 4.70
1536 1542 6.318648 CACTAGCAATTAAGATAACTGGGCAA 59.681 38.462 0.00 0.00 0.00 4.52
1577 1583 5.819991 AGCTTCAGAAGAATGGGAATACAA 58.180 37.500 14.86 0.00 32.31 2.41
1623 1629 2.472695 TCCATGAGGTTTCTGGTTCG 57.527 50.000 0.00 0.00 35.89 3.95
1630 1636 3.325425 TGAGGTTTCTGGTTCGGATAACA 59.675 43.478 0.00 0.00 0.00 2.41
1712 1718 3.118038 TGCTTTCTACTATTTGCGGGGAT 60.118 43.478 0.00 0.00 0.00 3.85
1747 1753 2.505405 CAGATGATGATTGGGAGGCTG 58.495 52.381 0.00 0.00 0.00 4.85
1748 1754 2.105993 CAGATGATGATTGGGAGGCTGA 59.894 50.000 0.00 0.00 0.00 4.26
1750 1756 4.019591 CAGATGATGATTGGGAGGCTGATA 60.020 45.833 0.00 0.00 0.00 2.15
1756 1762 5.296151 TGATTGGGAGGCTGATAGTTTAG 57.704 43.478 0.00 0.00 0.00 1.85
1771 1778 9.166173 CTGATAGTTTAGTTCATTGTTGGATGA 57.834 33.333 0.00 0.00 34.37 2.92
1888 1896 2.251818 CTCTGACAGAGGGGAGAAACA 58.748 52.381 22.69 0.00 38.67 2.83
1919 1927 3.890756 TGCACCATGTTGTTCAAGATCTT 59.109 39.130 0.88 0.88 0.00 2.40
1950 1958 2.605837 TGTAGCGACAAAACAGACCA 57.394 45.000 0.00 0.00 30.68 4.02
1953 1961 0.535102 AGCGACAAAACAGACCAGGG 60.535 55.000 0.00 0.00 0.00 4.45
1973 1981 1.734707 GCGCGTAAAGAGAAGTGGCTA 60.735 52.381 8.43 0.00 0.00 3.93
1989 1997 2.912956 TGGCTAGTGGACCAAAGAGAAT 59.087 45.455 8.91 0.00 31.46 2.40
1991 1999 4.721776 TGGCTAGTGGACCAAAGAGAATAT 59.278 41.667 8.91 0.00 31.46 1.28
1998 2006 4.344102 TGGACCAAAGAGAATATACCCGAG 59.656 45.833 0.00 0.00 0.00 4.63
2035 2043 4.272018 CACCGCTGATAGAATTTTCCTCTG 59.728 45.833 0.00 0.00 0.00 3.35
2041 2049 5.500234 TGATAGAATTTTCCTCTGTGGTGG 58.500 41.667 0.00 0.00 37.07 4.61
2052 2060 4.408921 TCCTCTGTGGTGGTGATATTAAGG 59.591 45.833 0.00 0.00 37.07 2.69
2075 2083 3.710209 ATTCCTAGTTCTTGCAGCTGT 57.290 42.857 16.64 0.00 0.00 4.40
2076 2084 2.462456 TCCTAGTTCTTGCAGCTGTG 57.538 50.000 16.64 6.38 0.00 3.66
2096 2104 6.093495 GCTGTGCTCACCTGTTAACATTAATA 59.907 38.462 9.13 0.00 0.00 0.98
2100 2108 9.158233 GTGCTCACCTGTTAACATTAATACTAA 57.842 33.333 9.13 0.00 0.00 2.24
2217 2225 2.029838 ACCATCAGAAATCGGAGCAC 57.970 50.000 0.00 0.00 0.00 4.40
2370 2378 3.465742 TGCTATCCAGACTGAAGATGC 57.534 47.619 3.32 6.61 0.00 3.91
2372 2380 3.181468 TGCTATCCAGACTGAAGATGCTG 60.181 47.826 3.32 0.00 0.00 4.41
2377 2385 1.207570 CAGACTGAAGATGCTGAGGCT 59.792 52.381 0.00 0.00 39.59 4.58
2383 2391 2.093288 TGAAGATGCTGAGGCTGTTAGG 60.093 50.000 0.00 0.00 39.59 2.69
2390 2398 4.766375 TGCTGAGGCTGTTAGGTTTATAC 58.234 43.478 0.00 0.00 39.59 1.47
2391 2399 3.802685 GCTGAGGCTGTTAGGTTTATACG 59.197 47.826 0.00 0.00 35.22 3.06
2407 2415 7.442364 AGGTTTATACGGATGTCATGATTTGAG 59.558 37.037 0.00 0.00 34.17 3.02
2411 2419 5.998454 ACGGATGTCATGATTTGAGAATC 57.002 39.130 0.00 0.00 41.67 2.52
2416 2424 7.076362 GGATGTCATGATTTGAGAATCGATTG 58.924 38.462 16.96 0.00 43.75 2.67
2417 2425 6.990341 TGTCATGATTTGAGAATCGATTGT 57.010 33.333 16.96 12.23 43.75 2.71
2424 2432 4.934075 TTGAGAATCGATTGTTCAGCAG 57.066 40.909 16.96 0.00 38.61 4.24
2429 2437 5.053145 AGAATCGATTGTTCAGCAGGATAC 58.947 41.667 16.96 0.00 0.00 2.24
2448 2456 6.814146 AGGATACATCGAAGAACTCAAAAGTC 59.186 38.462 0.00 0.00 43.58 3.01
2459 2467 6.459923 AGAACTCAAAAGTCTAACTAGGCTG 58.540 40.000 0.00 0.00 38.47 4.85
2465 2473 0.102663 GTCTAACTAGGCTGCGGGAC 59.897 60.000 0.00 0.00 0.00 4.46
2503 2511 5.813383 ACAAGATTCAGACTCCATGTTGAT 58.187 37.500 7.10 0.00 0.00 2.57
2548 2556 0.938008 GTAAGCGGCCTCTGCATTAC 59.062 55.000 0.00 4.74 40.13 1.89
2595 2603 4.546674 TCAGATATCACCACTGCTCCTTA 58.453 43.478 5.32 0.00 0.00 2.69
2613 2621 4.159879 TCCTTACAAGTAGCAAGGCTAGAC 59.840 45.833 0.00 0.00 42.11 2.59
2619 2627 2.169352 AGTAGCAAGGCTAGACACATGG 59.831 50.000 0.00 0.00 42.11 3.66
2637 2645 1.768275 TGGAAGCTCTGTCACTGGAAA 59.232 47.619 0.00 0.00 0.00 3.13
2649 2657 6.205464 TCTGTCACTGGAAAACATCAATCTTC 59.795 38.462 0.00 0.00 0.00 2.87
2657 2665 5.356470 GGAAAACATCAATCTTCTGGAGGAG 59.644 44.000 0.00 0.00 0.00 3.69
2658 2666 3.557228 ACATCAATCTTCTGGAGGAGC 57.443 47.619 0.00 0.00 0.00 4.70
2669 2677 1.892474 CTGGAGGAGCTAGTGATAGGC 59.108 57.143 0.00 0.00 0.00 3.93
2675 2683 1.616374 GAGCTAGTGATAGGCCAGACC 59.384 57.143 5.01 0.00 39.61 3.85
2676 2684 1.062886 AGCTAGTGATAGGCCAGACCA 60.063 52.381 5.01 0.00 43.14 4.02
2687 2695 2.089925 AGGCCAGACCAATATAGACCCT 60.090 50.000 5.01 0.00 43.14 4.34
2817 2825 5.527511 GAGAATATCCATCTCACATTGCG 57.472 43.478 0.00 0.00 42.33 4.85
2828 2836 3.187022 TCTCACATTGCGACAAGTTGATG 59.813 43.478 10.54 4.94 0.00 3.07
2857 2865 0.040058 TGGATCACATGGCTGCCTTT 59.960 50.000 21.03 4.44 0.00 3.11
2865 2873 0.393537 ATGGCTGCCTTTCCTCGAAG 60.394 55.000 21.03 0.00 0.00 3.79
2866 2874 1.296715 GGCTGCCTTTCCTCGAAGA 59.703 57.895 12.43 0.00 0.00 2.87
2890 2898 8.548877 AGATGTATATTTGGGTAACTGTGACTT 58.451 33.333 0.00 0.00 0.00 3.01
2926 2934 4.019860 AGTGGCTAAAGATGAAGAAGCTGA 60.020 41.667 0.00 0.00 33.67 4.26
2928 2936 4.019860 TGGCTAAAGATGAAGAAGCTGAGT 60.020 41.667 0.00 0.00 33.67 3.41
2940 2948 0.250209 AGCTGAGTTGTCTGCCACAG 60.250 55.000 0.00 0.00 46.20 3.66
2962 2970 1.896465 CTCCTTCCCTCGACTCAAGTT 59.104 52.381 0.00 0.00 0.00 2.66
2963 2971 2.300437 CTCCTTCCCTCGACTCAAGTTT 59.700 50.000 0.00 0.00 0.00 2.66
2964 2972 2.299297 TCCTTCCCTCGACTCAAGTTTC 59.701 50.000 0.00 0.00 0.00 2.78
2968 2976 1.618837 CCCTCGACTCAAGTTTCTGGA 59.381 52.381 0.00 0.00 0.00 3.86
2974 2982 4.583489 TCGACTCAAGTTTCTGGAGTTACT 59.417 41.667 8.02 0.00 44.00 2.24
3006 3014 7.287696 TGAAGAACCTACATAGCATCTGTGATA 59.712 37.037 0.00 0.00 0.00 2.15
3026 3034 1.134280 AGCAGAATCACCTTCCCATCG 60.134 52.381 0.00 0.00 34.11 3.84
3083 3091 0.884704 TGAAGCTGCCACGGAACTTC 60.885 55.000 0.00 0.00 37.77 3.01
3085 3093 4.090057 GCTGCCACGGAACTTCGC 62.090 66.667 0.00 0.00 0.00 4.70
3104 3112 2.725312 GGGCATCGAGAGCTCACCA 61.725 63.158 17.77 0.00 31.20 4.17
3114 3122 4.887655 TCGAGAGCTCACCACTGATATTTA 59.112 41.667 17.77 0.00 0.00 1.40
3119 3127 4.119862 GCTCACCACTGATATTTAGCGAA 58.880 43.478 0.00 0.00 0.00 4.70
3121 3129 5.079689 TCACCACTGATATTTAGCGAACA 57.920 39.130 0.00 0.00 0.00 3.18
3199 3207 3.244353 CCTTTCTTCAGAGAAGTGCCTGA 60.244 47.826 6.65 0.00 42.55 3.86
3228 3236 2.062519 GAGGAAGTCGACAAGAAGTGC 58.937 52.381 19.50 0.81 0.00 4.40
3229 3237 1.149148 GGAAGTCGACAAGAAGTGCC 58.851 55.000 19.50 0.00 0.00 5.01
3260 3268 3.006940 ACGCACTTTGTTCTTTCAGTCA 58.993 40.909 0.00 0.00 0.00 3.41
3264 3272 5.003778 CGCACTTTGTTCTTTCAGTCAAAAG 59.996 40.000 0.00 0.00 37.55 2.27
3274 3282 1.066454 TCAGTCAAAAGCGAGACGTCA 59.934 47.619 19.50 0.00 39.67 4.35
3330 3346 5.970317 TGTTCTGCAGATCAATTTGACAT 57.030 34.783 22.26 0.00 0.00 3.06
3342 3365 5.856156 TCAATTTGACATTGACATGCCTTT 58.144 33.333 0.00 0.00 33.55 3.11
3350 3373 3.540314 TTGACATGCCTTTTGTTGCTT 57.460 38.095 0.00 0.00 0.00 3.91
3351 3374 2.823984 TGACATGCCTTTTGTTGCTTG 58.176 42.857 0.00 0.00 38.28 4.01
3374 3397 5.699001 TGCATATATTCGGTGTACCATGTTC 59.301 40.000 1.50 0.00 35.14 3.18
3394 3419 5.046878 TGTTCCGTTCCATACTTGTATGTCT 60.047 40.000 16.56 0.00 0.00 3.41
3395 3420 5.006153 TCCGTTCCATACTTGTATGTCTG 57.994 43.478 16.56 5.10 0.00 3.51
3428 3453 9.670180 GTCATGTTTTTCTTTTTCTTTACAACG 57.330 29.630 0.00 0.00 0.00 4.10
3448 3473 7.998580 ACAACGAAAATAGAGGTTTGGTTTTA 58.001 30.769 0.00 0.00 35.52 1.52
3450 3475 6.675026 ACGAAAATAGAGGTTTGGTTTTAGC 58.325 36.000 0.00 0.00 0.00 3.09
3451 3476 6.489022 ACGAAAATAGAGGTTTGGTTTTAGCT 59.511 34.615 0.00 0.00 0.00 3.32
3454 3479 7.454260 AAATAGAGGTTTGGTTTTAGCTCAG 57.546 36.000 0.00 0.00 40.44 3.35
3472 3497 5.942236 AGCTCAGATCAAGATTGCAAAGTTA 59.058 36.000 1.71 0.00 0.00 2.24
3549 3575 9.231297 TGAAGAGGAAAAGAACTATTTATGTGG 57.769 33.333 0.00 0.00 0.00 4.17
3602 3628 9.736023 AATCTTTTACATCAAGTGTGAAACTTC 57.264 29.630 0.00 0.00 46.60 3.01
3711 3737 5.767168 TGGTTTGCCTTGAATTATTTTTGGG 59.233 36.000 0.00 0.00 35.27 4.12
3759 3785 3.341823 ACTGATGACAGCCTGAAACATC 58.658 45.455 17.20 17.20 46.95 3.06
3782 3808 3.055819 GGAAGATACAGTGTTGAGCCAGA 60.056 47.826 0.00 0.00 0.00 3.86
3810 3854 6.491403 ACAGTTCAGAGCCACATAAGAAAAAT 59.509 34.615 0.00 0.00 0.00 1.82
3837 3881 1.073763 TGGTATATGCAGCCATGACCC 59.926 52.381 0.00 0.00 37.70 4.46
3842 3886 0.557238 ATGCAGCCATGACCCCATTA 59.443 50.000 0.00 0.00 0.00 1.90
3931 3975 2.358195 GGCAATGTTTATGGAGAGGGGT 60.358 50.000 0.00 0.00 0.00 4.95
3933 3977 4.447762 GGCAATGTTTATGGAGAGGGGTAT 60.448 45.833 0.00 0.00 0.00 2.73
3935 3979 6.485171 GCAATGTTTATGGAGAGGGGTATAT 58.515 40.000 0.00 0.00 0.00 0.86
3948 3994 7.606839 GGAGAGGGGTATATTACAAAGCATAAC 59.393 40.741 0.00 0.00 0.00 1.89
3952 3998 6.657966 GGGGTATATTACAAAGCATAACCCTC 59.342 42.308 6.34 0.00 44.42 4.30
3957 4003 2.807676 ACAAAGCATAACCCTCCCTTG 58.192 47.619 0.00 0.00 0.00 3.61
3958 4004 2.102578 CAAAGCATAACCCTCCCTTGG 58.897 52.381 0.00 0.00 0.00 3.61
3959 4005 0.033109 AAGCATAACCCTCCCTTGGC 60.033 55.000 0.00 0.00 0.00 4.52
3960 4006 1.214305 AGCATAACCCTCCCTTGGCA 61.214 55.000 0.00 0.00 0.00 4.92
3961 4007 0.106015 GCATAACCCTCCCTTGGCAT 60.106 55.000 0.00 0.00 0.00 4.40
3962 4008 1.689258 GCATAACCCTCCCTTGGCATT 60.689 52.381 0.00 0.00 0.00 3.56
3963 4009 2.310538 CATAACCCTCCCTTGGCATTC 58.689 52.381 0.00 0.00 0.00 2.67
4023 4069 4.345257 TGATGCCTAGGAGTTATTCACCTC 59.655 45.833 14.75 0.00 38.13 3.85
4058 4104 2.771372 AGTGCCAAATTGACCAACCTTT 59.229 40.909 0.00 0.00 0.00 3.11
4157 4203 8.738645 AAATTGCTTCCTAAGTATAAGGACAG 57.261 34.615 0.00 0.00 42.89 3.51
4254 4306 5.232463 ACAAACATTTGCTAAATCTGCAGG 58.768 37.500 15.13 0.00 41.79 4.85
4258 4312 6.140303 ACATTTGCTAAATCTGCAGGTATG 57.860 37.500 15.13 7.97 41.71 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.622004 CATCATGCATGTAAAAGATCCTAAATC 57.378 33.333 25.43 0.00 0.00 2.17
1 2 9.139734 ACATCATGCATGTAAAAGATCCTAAAT 57.860 29.630 25.43 4.38 44.56 1.40
2 3 8.523915 ACATCATGCATGTAAAAGATCCTAAA 57.476 30.769 25.43 1.99 44.56 1.85
3 4 8.523915 AACATCATGCATGTAAAAGATCCTAA 57.476 30.769 25.43 2.45 45.77 2.69
4 5 7.774625 TGAACATCATGCATGTAAAAGATCCTA 59.225 33.333 25.43 2.66 45.77 2.94
5 6 6.604396 TGAACATCATGCATGTAAAAGATCCT 59.396 34.615 25.43 0.92 45.77 3.24
6 7 6.798482 TGAACATCATGCATGTAAAAGATCC 58.202 36.000 25.43 8.42 45.77 3.36
7 8 8.692110 TTTGAACATCATGCATGTAAAAGATC 57.308 30.769 25.43 15.30 45.77 2.75
8 9 9.661563 AATTTGAACATCATGCATGTAAAAGAT 57.338 25.926 25.43 8.46 45.77 2.40
9 10 9.491675 AAATTTGAACATCATGCATGTAAAAGA 57.508 25.926 25.43 6.27 45.77 2.52
11 12 9.880064 CAAAATTTGAACATCATGCATGTAAAA 57.120 25.926 25.43 12.46 45.77 1.52
12 13 9.053840 ACAAAATTTGAACATCATGCATGTAAA 57.946 25.926 25.43 16.71 45.77 2.01
13 14 8.496751 CACAAAATTTGAACATCATGCATGTAA 58.503 29.630 25.43 8.61 45.77 2.41
14 15 7.871463 TCACAAAATTTGAACATCATGCATGTA 59.129 29.630 25.43 13.19 45.77 2.29
16 17 7.123160 TCACAAAATTTGAACATCATGCATG 57.877 32.000 21.07 21.07 38.64 4.06
17 18 7.731882 TTCACAAAATTTGAACATCATGCAT 57.268 28.000 13.19 0.00 0.00 3.96
18 19 7.549615 TTTCACAAAATTTGAACATCATGCA 57.450 28.000 13.19 0.00 32.65 3.96
19 20 9.453325 AATTTTCACAAAATTTGAACATCATGC 57.547 25.926 13.19 0.00 46.01 4.06
32 33 9.719279 CTGTTTGCAATGTAATTTTCACAAAAT 57.281 25.926 0.00 0.00 42.62 1.82
33 34 8.725148 ACTGTTTGCAATGTAATTTTCACAAAA 58.275 25.926 0.00 0.00 31.22 2.44
34 35 8.261492 ACTGTTTGCAATGTAATTTTCACAAA 57.739 26.923 0.00 0.00 31.22 2.83
35 36 7.840342 ACTGTTTGCAATGTAATTTTCACAA 57.160 28.000 0.00 0.00 31.22 3.33
42 43 9.855021 GGAACTTATACTGTTTGCAATGTAATT 57.145 29.630 0.00 0.00 36.63 1.40
43 44 8.466798 GGGAACTTATACTGTTTGCAATGTAAT 58.533 33.333 0.00 0.00 0.00 1.89
44 45 7.668052 AGGGAACTTATACTGTTTGCAATGTAA 59.332 33.333 0.00 0.00 37.44 2.41
45 46 7.172342 AGGGAACTTATACTGTTTGCAATGTA 58.828 34.615 0.00 4.99 37.44 2.29
46 47 6.010219 AGGGAACTTATACTGTTTGCAATGT 58.990 36.000 0.00 2.67 37.44 2.71
47 48 6.515272 AGGGAACTTATACTGTTTGCAATG 57.485 37.500 0.00 0.00 37.44 2.82
64 65 7.035612 GGAATTGTGATGATGTTTAAGGGAAC 58.964 38.462 0.00 0.00 0.00 3.62
65 66 6.723515 TGGAATTGTGATGATGTTTAAGGGAA 59.276 34.615 0.00 0.00 0.00 3.97
66 67 6.252233 TGGAATTGTGATGATGTTTAAGGGA 58.748 36.000 0.00 0.00 0.00 4.20
67 68 6.528537 TGGAATTGTGATGATGTTTAAGGG 57.471 37.500 0.00 0.00 0.00 3.95
68 69 7.377398 TGTTGGAATTGTGATGATGTTTAAGG 58.623 34.615 0.00 0.00 0.00 2.69
69 70 8.815141 TTGTTGGAATTGTGATGATGTTTAAG 57.185 30.769 0.00 0.00 0.00 1.85
70 71 9.775854 ATTTGTTGGAATTGTGATGATGTTTAA 57.224 25.926 0.00 0.00 0.00 1.52
72 73 9.426837 CTATTTGTTGGAATTGTGATGATGTTT 57.573 29.630 0.00 0.00 0.00 2.83
73 74 7.546667 GCTATTTGTTGGAATTGTGATGATGTT 59.453 33.333 0.00 0.00 0.00 2.71
74 75 7.037438 GCTATTTGTTGGAATTGTGATGATGT 58.963 34.615 0.00 0.00 0.00 3.06
75 76 7.262772 AGCTATTTGTTGGAATTGTGATGATG 58.737 34.615 0.00 0.00 0.00 3.07
76 77 7.341256 AGAGCTATTTGTTGGAATTGTGATGAT 59.659 33.333 0.00 0.00 0.00 2.45
77 78 6.660521 AGAGCTATTTGTTGGAATTGTGATGA 59.339 34.615 0.00 0.00 0.00 2.92
78 79 6.860080 AGAGCTATTTGTTGGAATTGTGATG 58.140 36.000 0.00 0.00 0.00 3.07
79 80 7.611467 TGTAGAGCTATTTGTTGGAATTGTGAT 59.389 33.333 0.00 0.00 0.00 3.06
80 81 6.939730 TGTAGAGCTATTTGTTGGAATTGTGA 59.060 34.615 0.00 0.00 0.00 3.58
81 82 7.144722 TGTAGAGCTATTTGTTGGAATTGTG 57.855 36.000 0.00 0.00 0.00 3.33
82 83 7.759489 TTGTAGAGCTATTTGTTGGAATTGT 57.241 32.000 0.00 0.00 0.00 2.71
83 84 9.941664 CTATTGTAGAGCTATTTGTTGGAATTG 57.058 33.333 0.00 0.00 0.00 2.32
84 85 9.125026 CCTATTGTAGAGCTATTTGTTGGAATT 57.875 33.333 0.00 0.00 0.00 2.17
85 86 7.229506 GCCTATTGTAGAGCTATTTGTTGGAAT 59.770 37.037 0.00 0.00 0.00 3.01
86 87 6.542370 GCCTATTGTAGAGCTATTTGTTGGAA 59.458 38.462 0.00 0.00 0.00 3.53
87 88 6.055588 GCCTATTGTAGAGCTATTTGTTGGA 58.944 40.000 0.00 0.00 0.00 3.53
88 89 6.058183 AGCCTATTGTAGAGCTATTTGTTGG 58.942 40.000 0.00 0.00 32.84 3.77
89 90 7.559590 AAGCCTATTGTAGAGCTATTTGTTG 57.440 36.000 0.00 0.00 33.77 3.33
90 91 9.681062 TTAAAGCCTATTGTAGAGCTATTTGTT 57.319 29.630 0.00 0.00 33.77 2.83
91 92 9.331282 CTTAAAGCCTATTGTAGAGCTATTTGT 57.669 33.333 0.00 0.00 33.77 2.83
92 93 9.331282 ACTTAAAGCCTATTGTAGAGCTATTTG 57.669 33.333 0.00 0.00 33.77 2.32
93 94 9.907229 AACTTAAAGCCTATTGTAGAGCTATTT 57.093 29.630 0.00 0.00 33.77 1.40
94 95 9.331282 CAACTTAAAGCCTATTGTAGAGCTATT 57.669 33.333 0.00 0.00 33.77 1.73
95 96 8.487028 ACAACTTAAAGCCTATTGTAGAGCTAT 58.513 33.333 0.00 0.00 33.77 2.97
96 97 7.848128 ACAACTTAAAGCCTATTGTAGAGCTA 58.152 34.615 0.00 0.00 33.77 3.32
97 98 6.712276 ACAACTTAAAGCCTATTGTAGAGCT 58.288 36.000 0.00 0.00 35.00 4.09
98 99 6.986904 ACAACTTAAAGCCTATTGTAGAGC 57.013 37.500 0.00 0.00 31.88 4.09
102 103 9.595823 GATGTCTACAACTTAAAGCCTATTGTA 57.404 33.333 0.00 0.00 35.26 2.41
103 104 8.100791 TGATGTCTACAACTTAAAGCCTATTGT 58.899 33.333 0.00 0.00 37.30 2.71
104 105 8.391106 GTGATGTCTACAACTTAAAGCCTATTG 58.609 37.037 0.00 0.00 0.00 1.90
105 106 7.553044 GGTGATGTCTACAACTTAAAGCCTATT 59.447 37.037 0.00 0.00 0.00 1.73
106 107 7.048512 GGTGATGTCTACAACTTAAAGCCTAT 58.951 38.462 0.00 0.00 0.00 2.57
107 108 6.403878 GGTGATGTCTACAACTTAAAGCCTA 58.596 40.000 0.00 0.00 0.00 3.93
108 109 5.246307 GGTGATGTCTACAACTTAAAGCCT 58.754 41.667 0.00 0.00 0.00 4.58
109 110 4.395231 GGGTGATGTCTACAACTTAAAGCC 59.605 45.833 0.00 0.00 0.00 4.35
110 111 4.395231 GGGGTGATGTCTACAACTTAAAGC 59.605 45.833 0.00 0.00 0.00 3.51
111 112 5.643777 CAGGGGTGATGTCTACAACTTAAAG 59.356 44.000 0.00 0.00 0.00 1.85
112 113 5.072600 ACAGGGGTGATGTCTACAACTTAAA 59.927 40.000 0.00 0.00 0.00 1.52
113 114 4.595781 ACAGGGGTGATGTCTACAACTTAA 59.404 41.667 0.00 0.00 0.00 1.85
114 115 4.164981 ACAGGGGTGATGTCTACAACTTA 58.835 43.478 0.00 0.00 0.00 2.24
115 116 2.979678 ACAGGGGTGATGTCTACAACTT 59.020 45.455 0.00 0.00 0.00 2.66
116 117 2.567615 GACAGGGGTGATGTCTACAACT 59.432 50.000 0.00 0.00 43.03 3.16
117 118 2.354805 GGACAGGGGTGATGTCTACAAC 60.355 54.545 6.10 0.00 45.18 3.32
118 119 1.906574 GGACAGGGGTGATGTCTACAA 59.093 52.381 6.10 0.00 45.18 2.41
119 120 1.568504 GGACAGGGGTGATGTCTACA 58.431 55.000 6.10 0.00 45.18 2.74
120 121 0.831307 GGGACAGGGGTGATGTCTAC 59.169 60.000 6.10 0.00 45.18 2.59
121 122 0.716591 AGGGACAGGGGTGATGTCTA 59.283 55.000 6.10 0.00 45.18 2.59
122 123 0.716591 TAGGGACAGGGGTGATGTCT 59.283 55.000 6.10 0.00 45.18 3.41
123 124 1.807814 ATAGGGACAGGGGTGATGTC 58.192 55.000 0.00 0.00 45.12 3.06
124 125 3.116356 TGATATAGGGACAGGGGTGATGT 60.116 47.826 0.00 0.00 0.00 3.06
125 126 3.520696 TGATATAGGGACAGGGGTGATG 58.479 50.000 0.00 0.00 0.00 3.07
126 127 3.943269 TGATATAGGGACAGGGGTGAT 57.057 47.619 0.00 0.00 0.00 3.06
127 128 3.717507 TTGATATAGGGACAGGGGTGA 57.282 47.619 0.00 0.00 0.00 4.02
128 129 5.094387 AGTATTGATATAGGGACAGGGGTG 58.906 45.833 0.00 0.00 0.00 4.61
129 130 5.370623 AGTATTGATATAGGGACAGGGGT 57.629 43.478 0.00 0.00 0.00 4.95
130 131 9.094578 CATATAGTATTGATATAGGGACAGGGG 57.905 40.741 0.00 0.00 0.00 4.79
131 132 9.094578 CCATATAGTATTGATATAGGGACAGGG 57.905 40.741 0.00 0.00 38.67 4.45
132 133 9.883293 TCCATATAGTATTGATATAGGGACAGG 57.117 37.037 3.03 0.00 39.76 4.00
134 135 9.368416 GCTCCATATAGTATTGATATAGGGACA 57.632 37.037 3.03 0.00 39.76 4.02
135 136 9.368416 TGCTCCATATAGTATTGATATAGGGAC 57.632 37.037 3.03 2.60 39.76 4.46
155 156 9.241919 TCAAAGTCTCAAAATAAATATGCTCCA 57.758 29.630 0.00 0.00 0.00 3.86
156 157 9.727627 CTCAAAGTCTCAAAATAAATATGCTCC 57.272 33.333 0.00 0.00 0.00 4.70
163 164 8.230486 CGCACTACTCAAAGTCTCAAAATAAAT 58.770 33.333 0.00 0.00 0.00 1.40
164 165 7.439955 TCGCACTACTCAAAGTCTCAAAATAAA 59.560 33.333 0.00 0.00 0.00 1.40
165 166 6.926826 TCGCACTACTCAAAGTCTCAAAATAA 59.073 34.615 0.00 0.00 0.00 1.40
166 167 6.452242 TCGCACTACTCAAAGTCTCAAAATA 58.548 36.000 0.00 0.00 0.00 1.40
167 168 5.297547 TCGCACTACTCAAAGTCTCAAAAT 58.702 37.500 0.00 0.00 0.00 1.82
168 169 4.689071 TCGCACTACTCAAAGTCTCAAAA 58.311 39.130 0.00 0.00 0.00 2.44
169 170 4.316205 TCGCACTACTCAAAGTCTCAAA 57.684 40.909 0.00 0.00 0.00 2.69
170 171 4.316205 TTCGCACTACTCAAAGTCTCAA 57.684 40.909 0.00 0.00 0.00 3.02
171 172 4.237724 CATTCGCACTACTCAAAGTCTCA 58.762 43.478 0.00 0.00 0.00 3.27
172 173 3.614616 CCATTCGCACTACTCAAAGTCTC 59.385 47.826 0.00 0.00 0.00 3.36
173 174 3.589988 CCATTCGCACTACTCAAAGTCT 58.410 45.455 0.00 0.00 0.00 3.24
174 175 2.094417 GCCATTCGCACTACTCAAAGTC 59.906 50.000 0.00 0.00 37.47 3.01
175 176 2.076863 GCCATTCGCACTACTCAAAGT 58.923 47.619 0.00 0.00 37.47 2.66
176 177 1.398390 GGCCATTCGCACTACTCAAAG 59.602 52.381 0.00 0.00 40.31 2.77
177 178 1.448985 GGCCATTCGCACTACTCAAA 58.551 50.000 0.00 0.00 40.31 2.69
178 179 0.392461 GGGCCATTCGCACTACTCAA 60.392 55.000 4.39 0.00 38.16 3.02
179 180 1.220749 GGGCCATTCGCACTACTCA 59.779 57.895 4.39 0.00 38.16 3.41
180 181 4.126524 GGGCCATTCGCACTACTC 57.873 61.111 4.39 0.00 38.16 2.59
185 186 1.686325 TAGAGGAGGGCCATTCGCAC 61.686 60.000 6.18 0.00 43.45 5.34
186 187 0.764369 ATAGAGGAGGGCCATTCGCA 60.764 55.000 6.18 0.00 40.31 5.10
187 188 1.205893 CTATAGAGGAGGGCCATTCGC 59.794 57.143 6.18 0.00 36.29 4.70
188 189 2.530701 ACTATAGAGGAGGGCCATTCG 58.469 52.381 6.18 0.00 36.29 3.34
189 190 4.164204 AGAACTATAGAGGAGGGCCATTC 58.836 47.826 6.18 0.00 36.29 2.67
190 191 4.220861 AGAACTATAGAGGAGGGCCATT 57.779 45.455 6.18 0.00 36.29 3.16
191 192 3.933239 AGAACTATAGAGGAGGGCCAT 57.067 47.619 6.18 0.00 36.29 4.40
192 193 6.010650 ACATATAGAACTATAGAGGAGGGCCA 60.011 42.308 6.18 0.00 32.30 5.36
193 194 6.436890 ACATATAGAACTATAGAGGAGGGCC 58.563 44.000 6.78 0.00 32.18 5.80
194 195 7.722285 CCTACATATAGAACTATAGAGGAGGGC 59.278 44.444 18.06 0.00 36.00 5.19
195 196 7.722285 GCCTACATATAGAACTATAGAGGAGGG 59.278 44.444 22.53 14.15 37.92 4.30
196 197 7.442969 CGCCTACATATAGAACTATAGAGGAGG 59.557 44.444 19.82 19.82 39.11 4.30
197 198 8.205512 TCGCCTACATATAGAACTATAGAGGAG 58.794 40.741 19.85 17.84 33.02 3.69
198 199 8.087303 TCGCCTACATATAGAACTATAGAGGA 57.913 38.462 19.85 8.75 33.02 3.71
199 200 8.734218 TTCGCCTACATATAGAACTATAGAGG 57.266 38.462 6.78 15.45 33.66 3.69
201 202 9.955102 TCTTTCGCCTACATATAGAACTATAGA 57.045 33.333 6.78 0.00 32.18 1.98
204 205 9.915629 CTTTCTTTCGCCTACATATAGAACTAT 57.084 33.333 0.00 0.00 0.00 2.12
205 206 9.128404 TCTTTCTTTCGCCTACATATAGAACTA 57.872 33.333 0.00 0.00 0.00 2.24
206 207 7.921745 GTCTTTCTTTCGCCTACATATAGAACT 59.078 37.037 0.00 0.00 0.00 3.01
207 208 7.705325 TGTCTTTCTTTCGCCTACATATAGAAC 59.295 37.037 0.00 0.00 0.00 3.01
208 209 7.705325 GTGTCTTTCTTTCGCCTACATATAGAA 59.295 37.037 0.00 0.00 0.00 2.10
209 210 7.147966 TGTGTCTTTCTTTCGCCTACATATAGA 60.148 37.037 0.00 0.00 0.00 1.98
210 211 6.978659 TGTGTCTTTCTTTCGCCTACATATAG 59.021 38.462 0.00 0.00 0.00 1.31
211 212 6.755141 GTGTGTCTTTCTTTCGCCTACATATA 59.245 38.462 0.00 0.00 0.00 0.86
212 213 5.581085 GTGTGTCTTTCTTTCGCCTACATAT 59.419 40.000 0.00 0.00 0.00 1.78
213 214 4.927425 GTGTGTCTTTCTTTCGCCTACATA 59.073 41.667 0.00 0.00 0.00 2.29
214 215 3.746492 GTGTGTCTTTCTTTCGCCTACAT 59.254 43.478 0.00 0.00 0.00 2.29
215 216 3.128349 GTGTGTCTTTCTTTCGCCTACA 58.872 45.455 0.00 0.00 0.00 2.74
216 217 3.391049 AGTGTGTCTTTCTTTCGCCTAC 58.609 45.455 0.00 0.00 0.00 3.18
217 218 3.746045 AGTGTGTCTTTCTTTCGCCTA 57.254 42.857 0.00 0.00 0.00 3.93
218 219 2.614057 CAAGTGTGTCTTTCTTTCGCCT 59.386 45.455 0.00 0.00 33.63 5.52
219 220 2.854805 GCAAGTGTGTCTTTCTTTCGCC 60.855 50.000 0.00 0.00 33.63 5.54
220 221 2.032178 AGCAAGTGTGTCTTTCTTTCGC 59.968 45.455 0.00 0.00 33.63 4.70
221 222 3.951979 AGCAAGTGTGTCTTTCTTTCG 57.048 42.857 0.00 0.00 33.63 3.46
222 223 5.402398 ACAAAGCAAGTGTGTCTTTCTTTC 58.598 37.500 3.21 0.00 43.71 2.62
223 224 5.391312 ACAAAGCAAGTGTGTCTTTCTTT 57.609 34.783 0.00 0.00 45.36 2.52
224 225 5.391312 AACAAAGCAAGTGTGTCTTTCTT 57.609 34.783 0.00 0.00 40.29 2.52
225 226 4.142381 GGAACAAAGCAAGTGTGTCTTTCT 60.142 41.667 0.00 0.00 32.37 2.52
226 227 4.105486 GGAACAAAGCAAGTGTGTCTTTC 58.895 43.478 0.00 0.00 32.37 2.62
227 228 3.763897 AGGAACAAAGCAAGTGTGTCTTT 59.236 39.130 0.00 0.00 33.89 2.52
228 229 3.129287 CAGGAACAAAGCAAGTGTGTCTT 59.871 43.478 0.00 0.00 36.75 3.01
229 230 2.684881 CAGGAACAAAGCAAGTGTGTCT 59.315 45.455 0.00 0.00 0.00 3.41
230 231 2.682856 TCAGGAACAAAGCAAGTGTGTC 59.317 45.455 0.00 0.00 0.00 3.67
231 232 2.722094 TCAGGAACAAAGCAAGTGTGT 58.278 42.857 0.00 0.00 0.00 3.72
232 233 3.699067 CTTCAGGAACAAAGCAAGTGTG 58.301 45.455 0.00 0.00 0.00 3.82
233 234 2.099756 GCTTCAGGAACAAAGCAAGTGT 59.900 45.455 2.41 0.00 44.91 3.55
234 235 2.735823 GCTTCAGGAACAAAGCAAGTG 58.264 47.619 2.41 0.00 44.91 3.16
239 240 1.949525 TGTCTGCTTCAGGAACAAAGC 59.050 47.619 0.29 0.29 45.48 3.51
240 241 3.378112 TGTTGTCTGCTTCAGGAACAAAG 59.622 43.478 8.73 0.00 32.66 2.77
241 242 3.351740 TGTTGTCTGCTTCAGGAACAAA 58.648 40.909 8.73 0.00 32.66 2.83
242 243 2.997980 TGTTGTCTGCTTCAGGAACAA 58.002 42.857 8.73 4.36 34.13 2.83
243 244 2.708216 TGTTGTCTGCTTCAGGAACA 57.292 45.000 7.68 7.68 34.42 3.18
244 245 4.574599 ATTTGTTGTCTGCTTCAGGAAC 57.425 40.909 0.00 0.00 31.51 3.62
245 246 5.596836 AAATTTGTTGTCTGCTTCAGGAA 57.403 34.783 0.00 0.00 31.51 3.36
246 247 5.596836 AAAATTTGTTGTCTGCTTCAGGA 57.403 34.783 0.00 0.00 31.51 3.86
247 248 7.147312 TCATAAAATTTGTTGTCTGCTTCAGG 58.853 34.615 0.00 0.00 31.51 3.86
248 249 8.077991 TCTCATAAAATTTGTTGTCTGCTTCAG 58.922 33.333 0.00 0.00 0.00 3.02
249 250 7.939782 TCTCATAAAATTTGTTGTCTGCTTCA 58.060 30.769 0.00 0.00 0.00 3.02
250 251 8.976986 ATCTCATAAAATTTGTTGTCTGCTTC 57.023 30.769 0.00 0.00 0.00 3.86
252 253 9.453572 TCTATCTCATAAAATTTGTTGTCTGCT 57.546 29.630 0.00 0.00 0.00 4.24
272 273 9.347240 GGCCAAATATACATGCAATATCTATCT 57.653 33.333 0.00 0.00 0.00 1.98
273 274 9.123902 TGGCCAAATATACATGCAATATCTATC 57.876 33.333 0.61 0.00 0.00 2.08
274 275 9.478238 TTGGCCAAATATACATGCAATATCTAT 57.522 29.630 17.98 0.00 0.00 1.98
275 276 8.876303 TTGGCCAAATATACATGCAATATCTA 57.124 30.769 17.98 0.00 0.00 1.98
276 277 7.779754 TTGGCCAAATATACATGCAATATCT 57.220 32.000 17.98 0.00 0.00 1.98
277 278 7.010738 GCATTGGCCAAATATACATGCAATATC 59.989 37.037 25.67 2.71 33.25 1.63
278 279 6.819649 GCATTGGCCAAATATACATGCAATAT 59.180 34.615 25.67 2.58 33.25 1.28
279 280 6.164876 GCATTGGCCAAATATACATGCAATA 58.835 36.000 25.67 0.00 33.25 1.90
280 281 4.998672 GCATTGGCCAAATATACATGCAAT 59.001 37.500 25.67 3.61 33.25 3.56
281 282 4.378774 GCATTGGCCAAATATACATGCAA 58.621 39.130 25.67 0.43 33.25 4.08
282 283 3.992643 GCATTGGCCAAATATACATGCA 58.007 40.909 25.67 0.63 33.25 3.96
296 297 6.256539 GCTTTCTTAGAAAAATAGGCATTGGC 59.743 38.462 8.82 1.17 40.13 4.52
297 298 7.322664 TGCTTTCTTAGAAAAATAGGCATTGG 58.677 34.615 12.45 0.00 0.00 3.16
298 299 8.650714 GTTGCTTTCTTAGAAAAATAGGCATTG 58.349 33.333 15.74 0.74 0.00 2.82
299 300 7.819415 GGTTGCTTTCTTAGAAAAATAGGCATT 59.181 33.333 15.74 0.00 0.00 3.56
300 301 7.039082 TGGTTGCTTTCTTAGAAAAATAGGCAT 60.039 33.333 15.74 0.00 0.00 4.40
301 302 6.266558 TGGTTGCTTTCTTAGAAAAATAGGCA 59.733 34.615 12.45 12.45 0.00 4.75
302 303 6.687604 TGGTTGCTTTCTTAGAAAAATAGGC 58.312 36.000 8.82 8.56 0.00 3.93
303 304 8.110860 TCTGGTTGCTTTCTTAGAAAAATAGG 57.889 34.615 8.82 0.00 0.00 2.57
304 305 9.003658 TCTCTGGTTGCTTTCTTAGAAAAATAG 57.996 33.333 8.82 0.00 0.00 1.73
305 306 8.918202 TCTCTGGTTGCTTTCTTAGAAAAATA 57.082 30.769 8.82 0.00 0.00 1.40
306 307 7.823745 TCTCTGGTTGCTTTCTTAGAAAAAT 57.176 32.000 8.82 0.00 0.00 1.82
307 308 7.823745 ATCTCTGGTTGCTTTCTTAGAAAAA 57.176 32.000 8.82 0.00 0.00 1.94
308 309 8.918202 TTATCTCTGGTTGCTTTCTTAGAAAA 57.082 30.769 8.82 0.00 0.00 2.29
314 315 9.905713 TTGTATATTATCTCTGGTTGCTTTCTT 57.094 29.630 0.00 0.00 0.00 2.52
315 316 9.905713 TTTGTATATTATCTCTGGTTGCTTTCT 57.094 29.630 0.00 0.00 0.00 2.52
340 341 8.893727 CGGAGAACTGGTAAAATCATCTAAATT 58.106 33.333 0.00 0.00 0.00 1.82
341 342 8.047310 ACGGAGAACTGGTAAAATCATCTAAAT 58.953 33.333 0.00 0.00 0.00 1.40
342 343 7.333423 CACGGAGAACTGGTAAAATCATCTAAA 59.667 37.037 0.00 0.00 0.00 1.85
343 344 6.816640 CACGGAGAACTGGTAAAATCATCTAA 59.183 38.462 0.00 0.00 0.00 2.10
344 345 6.338146 CACGGAGAACTGGTAAAATCATCTA 58.662 40.000 0.00 0.00 0.00 1.98
345 346 5.178797 CACGGAGAACTGGTAAAATCATCT 58.821 41.667 0.00 0.00 0.00 2.90
346 347 4.201822 GCACGGAGAACTGGTAAAATCATC 60.202 45.833 0.00 0.00 0.00 2.92
347 348 3.689649 GCACGGAGAACTGGTAAAATCAT 59.310 43.478 0.00 0.00 0.00 2.45
348 349 3.071479 GCACGGAGAACTGGTAAAATCA 58.929 45.455 0.00 0.00 0.00 2.57
349 350 3.335579 AGCACGGAGAACTGGTAAAATC 58.664 45.455 0.00 0.00 0.00 2.17
350 351 3.418684 AGCACGGAGAACTGGTAAAAT 57.581 42.857 0.00 0.00 0.00 1.82
351 352 2.922740 AGCACGGAGAACTGGTAAAA 57.077 45.000 0.00 0.00 0.00 1.52
352 353 2.103432 TGAAGCACGGAGAACTGGTAAA 59.897 45.455 0.00 0.00 0.00 2.01
353 354 1.689813 TGAAGCACGGAGAACTGGTAA 59.310 47.619 0.00 0.00 0.00 2.85
354 355 1.334160 TGAAGCACGGAGAACTGGTA 58.666 50.000 0.00 0.00 0.00 3.25
355 356 0.468226 TTGAAGCACGGAGAACTGGT 59.532 50.000 0.00 0.00 0.00 4.00
356 357 1.593196 TTTGAAGCACGGAGAACTGG 58.407 50.000 0.00 0.00 0.00 4.00
357 358 2.807967 TGATTTGAAGCACGGAGAACTG 59.192 45.455 0.00 0.00 0.00 3.16
358 359 3.126001 TGATTTGAAGCACGGAGAACT 57.874 42.857 0.00 0.00 0.00 3.01
359 360 3.814945 CTTGATTTGAAGCACGGAGAAC 58.185 45.455 0.00 0.00 0.00 3.01
360 361 2.226437 GCTTGATTTGAAGCACGGAGAA 59.774 45.455 0.00 0.00 46.46 2.87
361 362 1.806542 GCTTGATTTGAAGCACGGAGA 59.193 47.619 0.00 0.00 46.46 3.71
362 363 2.253392 GCTTGATTTGAAGCACGGAG 57.747 50.000 0.00 0.00 46.46 4.63
369 370 9.565213 CCAGATTTAAGTAAGCTTGATTTGAAG 57.435 33.333 9.86 0.00 36.22 3.02
370 371 9.077885 ACCAGATTTAAGTAAGCTTGATTTGAA 57.922 29.630 9.86 4.38 36.22 2.69
371 372 8.635765 ACCAGATTTAAGTAAGCTTGATTTGA 57.364 30.769 9.86 0.00 36.22 2.69
372 373 9.774742 GTACCAGATTTAAGTAAGCTTGATTTG 57.225 33.333 9.86 0.00 36.22 2.32
373 374 9.515226 TGTACCAGATTTAAGTAAGCTTGATTT 57.485 29.630 9.86 3.28 36.22 2.17
374 375 9.515226 TTGTACCAGATTTAAGTAAGCTTGATT 57.485 29.630 9.86 6.22 36.22 2.57
375 376 9.686683 ATTGTACCAGATTTAAGTAAGCTTGAT 57.313 29.630 9.86 0.00 36.22 2.57
376 377 9.515226 AATTGTACCAGATTTAAGTAAGCTTGA 57.485 29.630 9.86 0.00 36.22 3.02
380 381 9.999009 GGTAAATTGTACCAGATTTAAGTAAGC 57.001 33.333 0.00 0.00 37.53 3.09
404 405 8.487028 CAGAGTTGGGACTAGATTTATTTAGGT 58.513 37.037 0.00 0.00 35.88 3.08
406 407 9.892130 AACAGAGTTGGGACTAGATTTATTTAG 57.108 33.333 0.00 0.00 35.88 1.85
422 423 9.226606 TGAAGGTGTAATTAATAACAGAGTTGG 57.773 33.333 0.00 0.00 0.00 3.77
464 466 1.399714 ATGCCAATCTGAGCCATGTG 58.600 50.000 0.00 0.00 0.00 3.21
477 479 1.493854 AACCGGGGTGAGTATGCCAA 61.494 55.000 6.32 0.00 0.00 4.52
506 508 4.043561 TGGCTCCCATAACTCTTTTACCAA 59.956 41.667 0.00 0.00 0.00 3.67
508 510 4.230745 TGGCTCCCATAACTCTTTTACC 57.769 45.455 0.00 0.00 0.00 2.85
514 516 3.782523 TCTTGATTGGCTCCCATAACTCT 59.217 43.478 0.00 0.00 31.53 3.24
529 531 6.125029 ACAGTAGCCAATATGCTTCTTGATT 58.875 36.000 0.00 0.00 42.75 2.57
563 565 4.156556 TGCTAGATTGCAGACATTGGTTTC 59.843 41.667 0.00 0.00 38.12 2.78
586 588 4.084287 TCCTCAATTCATCAGCAGCTTTT 58.916 39.130 0.00 0.00 0.00 2.27
625 627 0.824109 CTAACTGGATGGCCTCGTCA 59.176 55.000 3.32 0.00 34.31 4.35
628 630 0.179073 CACCTAACTGGATGGCCTCG 60.179 60.000 3.32 0.00 39.71 4.63
632 634 0.323360 TTGGCACCTAACTGGATGGC 60.323 55.000 0.00 0.00 40.28 4.40
637 639 0.539438 TTGCCTTGGCACCTAACTGG 60.539 55.000 14.52 0.00 42.93 4.00
648 650 1.986882 ACTTTGGTCTCTTGCCTTGG 58.013 50.000 0.00 0.00 0.00 3.61
649 651 3.882888 TGTAACTTTGGTCTCTTGCCTTG 59.117 43.478 0.00 0.00 0.00 3.61
663 669 6.181908 TGTCCACCTTGTTACTTGTAACTTT 58.818 36.000 20.02 4.11 0.00 2.66
667 673 5.364446 TCTCTGTCCACCTTGTTACTTGTAA 59.636 40.000 0.00 0.00 0.00 2.41
680 686 1.214062 CGAGCACTCTCTGTCCACC 59.786 63.158 0.00 0.00 37.19 4.61
711 717 1.612676 TGCTGATGTTGCAAGCTTCT 58.387 45.000 0.00 0.00 37.51 2.85
722 728 3.118149 TGCCTCATACTCATTGCTGATGT 60.118 43.478 1.51 0.00 37.06 3.06
733 739 3.388024 TGTATGGTCCTTGCCTCATACTC 59.612 47.826 11.81 0.00 41.24 2.59
738 744 4.234550 AGATATGTATGGTCCTTGCCTCA 58.765 43.478 0.00 0.00 0.00 3.86
739 745 4.899352 AGATATGTATGGTCCTTGCCTC 57.101 45.455 0.00 0.00 0.00 4.70
763 769 1.073897 AACAACTCCAGGAGCAGCC 59.926 57.895 17.31 0.00 32.04 4.85
872 878 1.067516 CAACTGGTGGGAGCAAACTTG 59.932 52.381 0.00 0.00 0.00 3.16
978 984 2.029649 GCCACATATGCCAATGATGTCC 60.030 50.000 1.58 0.00 31.44 4.02
1047 1053 8.535335 TCAAATATAGGCCTTTCAGAGCTATAG 58.465 37.037 12.58 0.00 0.00 1.31
1081 1087 5.558844 GCTGCTTGCCAACTTCAATAAAAAC 60.559 40.000 0.00 0.00 35.15 2.43
1083 1089 4.057432 GCTGCTTGCCAACTTCAATAAAA 58.943 39.130 0.00 0.00 35.15 1.52
1157 1163 3.245016 TGTTGCATCTCCTCCATCTGTTT 60.245 43.478 0.00 0.00 0.00 2.83
1215 1221 8.084073 TCATCAATCAACAACAGGAATTTCTTC 58.916 33.333 0.00 0.00 0.00 2.87
1227 1233 6.095377 GTCCCAAAGATCATCAATCAACAAC 58.905 40.000 0.00 0.00 36.79 3.32
1324 1330 3.996363 TCCAAAGATCGTGTTGTGATCAG 59.004 43.478 0.00 0.00 43.73 2.90
1350 1356 8.755696 TTTCAAAAATATGCATTCTACCACAC 57.244 30.769 3.54 0.00 0.00 3.82
1386 1392 6.203808 TGATCAGAATCCAAGCATTTCAAG 57.796 37.500 0.00 0.00 0.00 3.02
1399 1405 3.821600 AGCTGCCATGAATGATCAGAATC 59.178 43.478 0.09 0.21 39.39 2.52
1413 1419 5.857268 ACAATTTCTTTAAACAGCTGCCAT 58.143 33.333 15.27 2.33 0.00 4.40
1431 1437 5.147032 TCCATCTTTCTTCCACCAACAATT 58.853 37.500 0.00 0.00 0.00 2.32
1463 1469 2.516930 CGGCGCATCCCCTGATTT 60.517 61.111 10.83 0.00 0.00 2.17
1467 1473 4.161295 TTCTCGGCGCATCCCCTG 62.161 66.667 10.83 0.00 0.00 4.45
1491 1497 0.247460 GAAGGCCTCCACATTTTGCC 59.753 55.000 5.23 0.00 42.48 4.52
1506 1512 7.227512 CCAGTTATCTTAATTGCTAGTGGAAGG 59.772 40.741 0.00 0.00 0.00 3.46
1623 1629 9.886132 TTCAGTATAGGAAAGAGTTTGTTATCC 57.114 33.333 0.00 0.00 0.00 2.59
1683 1689 5.961843 CGCAAATAGTAGAAAGCACATTCTG 59.038 40.000 9.03 0.00 39.87 3.02
1712 1718 2.410322 ATCTGGGTCTTGTGCGGCAA 62.410 55.000 3.23 0.00 35.50 4.52
1743 1749 6.374333 TCCAACAATGAACTAAACTATCAGCC 59.626 38.462 0.00 0.00 0.00 4.85
1747 1753 8.125448 GCTCATCCAACAATGAACTAAACTATC 58.875 37.037 0.00 0.00 35.32 2.08
1748 1754 7.067494 GGCTCATCCAACAATGAACTAAACTAT 59.933 37.037 0.00 0.00 35.32 2.12
1750 1756 5.183904 GGCTCATCCAACAATGAACTAAACT 59.816 40.000 0.00 0.00 35.32 2.66
1771 1778 2.914289 GCCTAGCAGTCCATGGCT 59.086 61.111 6.96 4.72 43.94 4.75
1888 1896 4.339872 ACAACATGGTGCATTTTCACAT 57.660 36.364 11.63 0.00 38.66 3.21
1919 1927 0.323302 TCGCTACAATCCACAAGGCA 59.677 50.000 0.00 0.00 33.74 4.75
1948 1956 1.079405 TTCTCTTTACGCGCCCTGG 60.079 57.895 5.73 0.00 0.00 4.45
1950 1958 0.389948 CACTTCTCTTTACGCGCCCT 60.390 55.000 5.73 0.00 0.00 5.19
1953 1961 1.014564 AGCCACTTCTCTTTACGCGC 61.015 55.000 5.73 0.00 0.00 6.86
1973 1981 4.101119 CGGGTATATTCTCTTTGGTCCACT 59.899 45.833 0.00 0.00 0.00 4.00
1989 1997 1.135527 CCAAACGTCTGCTCGGGTATA 59.864 52.381 0.00 0.00 34.94 1.47
1991 1999 1.180456 TCCAAACGTCTGCTCGGGTA 61.180 55.000 0.00 0.00 34.94 3.69
1998 2006 2.946762 GGTGCTCCAAACGTCTGC 59.053 61.111 0.00 0.00 0.00 4.26
2035 2043 5.221244 GGAATTGCCTTAATATCACCACCAC 60.221 44.000 0.00 0.00 0.00 4.16
2052 2060 2.751806 AGCTGCAAGAACTAGGAATTGC 59.248 45.455 16.62 16.62 46.36 3.56
2075 2083 9.158233 GTTAGTATTAATGTTAACAGGTGAGCA 57.842 33.333 14.65 0.00 0.00 4.26
2076 2084 9.158233 TGTTAGTATTAATGTTAACAGGTGAGC 57.842 33.333 14.65 3.53 32.71 4.26
2096 2104 9.013229 TCAGAAATATGCTCATTGTTTGTTAGT 57.987 29.630 0.00 0.00 0.00 2.24
2100 2108 7.458409 ACTCAGAAATATGCTCATTGTTTGT 57.542 32.000 0.00 0.00 0.00 2.83
2217 2225 2.086054 AGGAACTGCAAGCTCGTTAG 57.914 50.000 0.00 0.00 37.18 2.34
2313 2321 1.467734 TCTGAGACGGAAAGCGTAGTC 59.532 52.381 0.00 0.00 0.00 2.59
2315 2323 2.631418 TTCTGAGACGGAAAGCGTAG 57.369 50.000 0.00 0.00 0.00 3.51
2317 2325 2.457366 ATTTCTGAGACGGAAAGCGT 57.543 45.000 10.67 0.00 41.23 5.07
2319 2327 5.357257 TGGTATATTTCTGAGACGGAAAGC 58.643 41.667 10.67 0.34 41.23 3.51
2357 2365 1.207570 AGCCTCAGCATCTTCAGTCTG 59.792 52.381 0.00 0.00 43.56 3.51
2370 2378 4.098960 TCCGTATAAACCTAACAGCCTCAG 59.901 45.833 0.00 0.00 0.00 3.35
2372 2380 4.660789 TCCGTATAAACCTAACAGCCTC 57.339 45.455 0.00 0.00 0.00 4.70
2377 2385 7.114866 TCATGACATCCGTATAAACCTAACA 57.885 36.000 0.00 0.00 0.00 2.41
2383 2391 8.365399 TCTCAAATCATGACATCCGTATAAAC 57.635 34.615 0.00 0.00 33.47 2.01
2390 2398 4.746611 TCGATTCTCAAATCATGACATCCG 59.253 41.667 0.00 0.00 41.22 4.18
2391 2399 6.798315 ATCGATTCTCAAATCATGACATCC 57.202 37.500 0.00 0.00 41.22 3.51
2407 2415 4.811024 TGTATCCTGCTGAACAATCGATTC 59.189 41.667 7.92 0.00 0.00 2.52
2411 2419 3.183172 CGATGTATCCTGCTGAACAATCG 59.817 47.826 0.00 0.00 0.00 3.34
2416 2424 4.046938 TCTTCGATGTATCCTGCTGAAC 57.953 45.455 0.00 0.00 0.00 3.18
2417 2425 4.160439 AGTTCTTCGATGTATCCTGCTGAA 59.840 41.667 0.00 0.00 0.00 3.02
2424 2432 6.814146 AGACTTTTGAGTTCTTCGATGTATCC 59.186 38.462 0.00 0.00 0.00 2.59
2429 2437 7.644986 AGTTAGACTTTTGAGTTCTTCGATG 57.355 36.000 0.00 0.00 0.00 3.84
2448 2456 0.753262 ATGTCCCGCAGCCTAGTTAG 59.247 55.000 0.00 0.00 0.00 2.34
2459 2467 2.629051 ACTGTAAAGCTAATGTCCCGC 58.371 47.619 0.00 0.00 0.00 6.13
2465 2473 9.371136 TCTGAATCTTGTACTGTAAAGCTAATG 57.629 33.333 0.00 0.00 0.00 1.90
2503 2511 1.347707 CTCTGGGCAAGTTACAGACCA 59.652 52.381 2.56 2.56 41.71 4.02
2505 2513 1.443802 GCTCTGGGCAAGTTACAGAC 58.556 55.000 0.00 0.00 41.35 3.51
2548 2556 3.695060 AGATTGCAAGCCTTCAAGATCTG 59.305 43.478 11.83 0.00 0.00 2.90
2551 2559 3.965694 AGAGATTGCAAGCCTTCAAGAT 58.034 40.909 11.83 0.00 0.00 2.40
2595 2603 2.632996 TGTGTCTAGCCTTGCTACTTGT 59.367 45.455 0.00 0.00 40.44 3.16
2613 2621 2.074576 CAGTGACAGAGCTTCCATGTG 58.925 52.381 0.00 0.00 0.00 3.21
2619 2627 3.206150 TGTTTTCCAGTGACAGAGCTTC 58.794 45.455 0.00 0.00 0.00 3.86
2637 2645 3.522750 AGCTCCTCCAGAAGATTGATGTT 59.477 43.478 0.00 0.00 0.00 2.71
2649 2657 1.892474 GCCTATCACTAGCTCCTCCAG 59.108 57.143 0.00 0.00 0.00 3.86
2657 2665 1.414158 TGGTCTGGCCTATCACTAGC 58.586 55.000 3.32 0.00 38.35 3.42
2658 2666 6.892456 TCTATATTGGTCTGGCCTATCACTAG 59.108 42.308 3.32 1.01 38.35 2.57
2669 2677 3.318313 ACCAGGGTCTATATTGGTCTGG 58.682 50.000 14.40 14.40 39.68 3.86
2675 2683 3.117888 AGCACCAACCAGGGTCTATATTG 60.118 47.826 0.00 0.00 43.89 1.90
2676 2684 3.123273 AGCACCAACCAGGGTCTATATT 58.877 45.455 0.00 0.00 43.89 1.28
2687 2695 2.132996 CCTTGGCAAGCACCAACCA 61.133 57.895 21.77 0.00 44.80 3.67
2732 2740 2.564947 CTCAACCCTCTGAAGTGCTAGT 59.435 50.000 0.00 0.00 0.00 2.57
2733 2741 2.564947 ACTCAACCCTCTGAAGTGCTAG 59.435 50.000 0.00 0.00 0.00 3.42
2817 2825 4.201753 CCATGTGATCGACATCAACTTGTC 60.202 45.833 7.54 0.00 43.96 3.18
2857 2865 7.289317 AGTTACCCAAATATACATCTTCGAGGA 59.711 37.037 0.00 0.00 0.00 3.71
2865 2873 8.612619 CAAGTCACAGTTACCCAAATATACATC 58.387 37.037 0.00 0.00 0.00 3.06
2866 2874 8.325787 TCAAGTCACAGTTACCCAAATATACAT 58.674 33.333 0.00 0.00 0.00 2.29
2890 2898 7.476540 TCTTTAGCCACTAACTCAACTATCA 57.523 36.000 0.00 0.00 0.00 2.15
2940 2948 1.258445 TTGAGTCGAGGGAAGGAGCC 61.258 60.000 0.00 0.00 0.00 4.70
2962 2970 8.095169 GGTTCTTCAGATTAAGTAACTCCAGAA 58.905 37.037 0.00 0.00 0.00 3.02
2963 2971 7.455008 AGGTTCTTCAGATTAAGTAACTCCAGA 59.545 37.037 0.00 0.00 0.00 3.86
2964 2972 7.616313 AGGTTCTTCAGATTAAGTAACTCCAG 58.384 38.462 0.00 0.00 0.00 3.86
2974 2982 8.928448 AGATGCTATGTAGGTTCTTCAGATTAA 58.072 33.333 0.00 0.00 0.00 1.40
3006 3014 1.134280 CGATGGGAAGGTGATTCTGCT 60.134 52.381 0.00 0.00 38.07 4.24
3026 3034 0.385974 AAACGAGCAAGCGCATCAAC 60.386 50.000 11.47 0.00 42.27 3.18
3085 3093 2.279120 GTGAGCTCTCGATGCCCG 60.279 66.667 16.19 0.00 40.25 6.13
3090 3098 1.774110 ATCAGTGGTGAGCTCTCGAT 58.226 50.000 16.19 6.67 35.66 3.59
3104 3112 7.754924 CACCATTTTTGTTCGCTAAATATCAGT 59.245 33.333 0.00 0.00 0.00 3.41
3114 3122 1.698506 TCCCACCATTTTTGTTCGCT 58.301 45.000 0.00 0.00 0.00 4.93
3119 3127 6.800072 TCTAAACTTTCCCACCATTTTTGT 57.200 33.333 0.00 0.00 0.00 2.83
3121 3129 7.223584 CCATTCTAAACTTTCCCACCATTTTT 58.776 34.615 0.00 0.00 0.00 1.94
3215 3223 1.371183 CCTGGGCACTTCTTGTCGA 59.629 57.895 0.00 0.00 0.00 4.20
3217 3225 4.404691 CCCTGGGCACTTCTTGTC 57.595 61.111 0.00 0.00 0.00 3.18
3242 3250 5.003778 CGCTTTTGACTGAAAGAACAAAGTG 59.996 40.000 1.82 0.00 41.37 3.16
3243 3251 5.095490 CGCTTTTGACTGAAAGAACAAAGT 58.905 37.500 1.82 0.00 41.37 2.66
3247 3255 4.034048 GTCTCGCTTTTGACTGAAAGAACA 59.966 41.667 1.82 0.00 38.60 3.18
3260 3268 3.325870 TCATGATTGACGTCTCGCTTTT 58.674 40.909 17.92 0.00 0.00 2.27
3264 3272 0.574454 GCTCATGATTGACGTCTCGC 59.426 55.000 17.92 6.16 0.00 5.03
3301 3310 7.122204 TCAAATTGATCTGCAGAACATCTCAAT 59.878 33.333 26.09 26.09 39.29 2.57
3314 3330 5.005394 GCATGTCAATGTCAAATTGATCTGC 59.995 40.000 10.10 10.10 39.80 4.26
3330 3346 3.196463 CAAGCAACAAAAGGCATGTCAA 58.804 40.909 0.00 0.00 0.00 3.18
3342 3365 4.397730 ACACCGAATATATGCAAGCAACAA 59.602 37.500 0.00 0.00 0.00 2.83
3374 3397 4.755411 ACAGACATACAAGTATGGAACGG 58.245 43.478 20.69 14.67 45.36 4.44
3394 3419 9.868277 AGAAAAAGAAAAACATGACATGTAACA 57.132 25.926 21.10 0.00 44.07 2.41
3413 3438 9.946165 ACCTCTATTTTCGTTGTAAAGAAAAAG 57.054 29.630 17.68 15.60 45.61 2.27
3423 3448 6.459670 AAACCAAACCTCTATTTTCGTTGT 57.540 33.333 0.00 0.00 0.00 3.32
3424 3449 7.114388 GCTAAAACCAAACCTCTATTTTCGTTG 59.886 37.037 0.00 0.00 0.00 4.10
3426 3451 6.489022 AGCTAAAACCAAACCTCTATTTTCGT 59.511 34.615 0.00 0.00 0.00 3.85
3427 3452 6.909909 AGCTAAAACCAAACCTCTATTTTCG 58.090 36.000 0.00 0.00 0.00 3.46
3428 3453 7.882179 TGAGCTAAAACCAAACCTCTATTTTC 58.118 34.615 0.00 0.00 0.00 2.29
3433 3458 5.818678 TCTGAGCTAAAACCAAACCTCTA 57.181 39.130 0.00 0.00 0.00 2.43
3448 3473 4.333690 ACTTTGCAATCTTGATCTGAGCT 58.666 39.130 0.00 0.00 0.00 4.09
3450 3475 7.749570 CACTTAACTTTGCAATCTTGATCTGAG 59.250 37.037 0.00 0.00 0.00 3.35
3451 3476 7.445096 TCACTTAACTTTGCAATCTTGATCTGA 59.555 33.333 0.00 0.00 0.00 3.27
3454 3479 7.324616 GTGTCACTTAACTTTGCAATCTTGATC 59.675 37.037 0.00 0.00 0.00 2.92
3524 3550 9.232473 ACCACATAAATAGTTCTTTTCCTCTTC 57.768 33.333 0.00 0.00 0.00 2.87
3528 3554 7.728532 ACCAACCACATAAATAGTTCTTTTCCT 59.271 33.333 0.00 0.00 0.00 3.36
3530 3556 8.027189 GGACCAACCACATAAATAGTTCTTTTC 58.973 37.037 0.00 0.00 38.79 2.29
3533 3559 6.548321 TGGACCAACCACATAAATAGTTCTT 58.452 36.000 0.00 0.00 44.64 2.52
3534 3560 6.134535 TGGACCAACCACATAAATAGTTCT 57.865 37.500 0.00 0.00 44.64 3.01
3548 3574 0.379316 GTGTTCACGTTGGACCAACC 59.621 55.000 27.79 15.75 40.82 3.77
3549 3575 1.063469 CAGTGTTCACGTTGGACCAAC 59.937 52.381 24.98 24.98 40.54 3.77
3672 3698 3.328505 CAAACCAATGCCAAAGGTCATC 58.671 45.455 0.00 0.00 33.74 2.92
3732 3758 4.350368 TCAGGCTGTCATCAGTTTAACA 57.650 40.909 15.27 0.00 43.05 2.41
3733 3759 5.008613 TGTTTCAGGCTGTCATCAGTTTAAC 59.991 40.000 15.27 5.46 43.05 2.01
3748 3774 3.531538 TGTATCTTCCGATGTTTCAGGC 58.468 45.455 0.00 0.00 0.00 4.85
3759 3785 2.271800 GGCTCAACACTGTATCTTCCG 58.728 52.381 0.00 0.00 0.00 4.30
3782 3808 6.299805 TCTTATGTGGCTCTGAACTGTAAT 57.700 37.500 0.00 0.00 0.00 1.89
3810 3854 4.972751 TGGCTGCATATACCATCTGTAA 57.027 40.909 0.50 0.00 31.94 2.41
3837 3881 9.868277 GGAACATAGATGAGAAGTAGATAATGG 57.132 37.037 0.00 0.00 0.00 3.16
3842 3886 9.836179 ATAAGGGAACATAGATGAGAAGTAGAT 57.164 33.333 0.00 0.00 0.00 1.98
3931 3975 7.642094 AGGGAGGGTTATGCTTTGTAATATA 57.358 36.000 0.00 0.00 0.00 0.86
3933 3977 5.987019 AGGGAGGGTTATGCTTTGTAATA 57.013 39.130 0.00 0.00 0.00 0.98
3935 3979 4.340617 CAAGGGAGGGTTATGCTTTGTAA 58.659 43.478 0.00 0.00 0.00 2.41
3948 3994 2.830370 GCGAATGCCAAGGGAGGG 60.830 66.667 0.00 0.00 33.98 4.30
3952 3998 2.420568 ATGCTGCGAATGCCAAGGG 61.421 57.895 0.00 0.00 41.78 3.95
3957 4003 0.815213 TACTCCATGCTGCGAATGCC 60.815 55.000 0.00 0.00 41.78 4.40
3958 4004 1.069432 CATACTCCATGCTGCGAATGC 60.069 52.381 0.00 0.00 43.20 3.56
3959 4005 1.534163 CCATACTCCATGCTGCGAATG 59.466 52.381 0.00 0.00 32.84 2.67
3960 4006 1.141657 ACCATACTCCATGCTGCGAAT 59.858 47.619 0.00 0.00 32.84 3.34
3961 4007 0.541392 ACCATACTCCATGCTGCGAA 59.459 50.000 0.00 0.00 32.84 4.70
3962 4008 0.179076 CACCATACTCCATGCTGCGA 60.179 55.000 0.00 0.00 32.84 5.10
3963 4009 0.462581 ACACCATACTCCATGCTGCG 60.463 55.000 0.00 0.00 32.84 5.18
4023 4069 5.341872 TTTGGCACTCATTTTGGATATGG 57.658 39.130 0.00 0.00 0.00 2.74
4058 4104 2.104111 AGTTCCCGTGTGAGTTTCATCA 59.896 45.455 0.00 0.00 0.00 3.07
4154 4200 1.684248 GGAGATTGCAAGATGCCCTGT 60.684 52.381 4.94 0.00 44.23 4.00
4156 4202 0.465097 CGGAGATTGCAAGATGCCCT 60.465 55.000 4.94 0.00 44.23 5.19
4157 4203 0.749454 ACGGAGATTGCAAGATGCCC 60.749 55.000 4.94 0.85 44.23 5.36
4187 4233 3.549794 GAGCCATTCCAGAGCTTAATGT 58.450 45.455 0.00 0.00 36.87 2.71
4188 4234 2.547211 CGAGCCATTCCAGAGCTTAATG 59.453 50.000 0.00 0.00 36.87 1.90
4254 4306 5.006165 GCTCTGCATCACTAAACTGACATAC 59.994 44.000 0.00 0.00 0.00 2.39
4258 4312 3.329386 TGCTCTGCATCACTAAACTGAC 58.671 45.455 0.00 0.00 31.71 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.