Multiple sequence alignment - TraesCS2A01G544400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G544400 chr2A 100.000 3021 0 0 1 3021 753702843 753705863 0.000000e+00 5579.0
1 TraesCS2A01G544400 chr2B 87.958 1528 131 20 1511 3021 763877891 763879382 0.000000e+00 1753.0
2 TraesCS2A01G544400 chr2B 87.265 1225 114 24 290 1486 763876693 763877903 0.000000e+00 1360.0
3 TraesCS2A01G544400 chr2B 85.664 286 37 3 1 286 575143591 575143310 6.330000e-77 298.0
4 TraesCS2A01G544400 chr2B 86.022 279 32 3 15 292 463343258 463342986 2.950000e-75 292.0
5 TraesCS2A01G544400 chr2B 85.019 267 40 0 17 283 155108516 155108250 3.840000e-69 272.0
6 TraesCS2A01G544400 chr2D 91.842 1189 75 11 1511 2697 621977234 621978402 0.000000e+00 1639.0
7 TraesCS2A01G544400 chr2D 89.452 730 47 14 766 1467 621976502 621977229 0.000000e+00 894.0
8 TraesCS2A01G544400 chr2D 86.079 431 45 11 443 870 621972735 621973153 1.650000e-122 449.0
9 TraesCS2A01G544400 chr2D 90.845 284 22 2 2734 3017 621978398 621978677 7.910000e-101 377.0
10 TraesCS2A01G544400 chr2D 97.531 81 2 0 290 370 621972712 621972792 4.060000e-29 139.0
11 TraesCS2A01G544400 chr2D 86.667 105 11 2 2771 2874 543814198 543814096 2.460000e-21 113.0
12 TraesCS2A01G544400 chr2D 92.727 55 2 2 1149 1201 621979708 621979654 8.980000e-11 78.7
13 TraesCS2A01G544400 chr1D 87.931 290 35 0 1 290 193365618 193365907 2.880000e-90 342.0
14 TraesCS2A01G544400 chr1D 84.211 266 39 2 23 288 193364851 193364589 3.860000e-64 255.0
15 TraesCS2A01G544400 chr1A 87.823 271 32 1 21 290 239109425 239109695 1.750000e-82 316.0
16 TraesCS2A01G544400 chr7D 85.862 290 39 2 9 298 22966441 22966154 1.050000e-79 307.0
17 TraesCS2A01G544400 chr6A 89.427 227 20 2 1 227 612304801 612305023 1.770000e-72 283.0
18 TraesCS2A01G544400 chr7B 84.706 255 39 0 36 290 535613526 535613272 3.860000e-64 255.0
19 TraesCS2A01G544400 chr7B 85.981 107 12 1 2768 2874 231199778 231199881 8.850000e-21 111.0
20 TraesCS2A01G544400 chr3D 89.109 101 8 1 2775 2875 277765150 277765247 4.090000e-24 122.0
21 TraesCS2A01G544400 chr3D 86.538 104 11 1 2771 2874 460120912 460120812 8.850000e-21 111.0
22 TraesCS2A01G544400 chr1B 86.239 109 14 1 2768 2875 146573568 146573676 1.900000e-22 117.0
23 TraesCS2A01G544400 chr5B 86.667 105 11 1 2771 2875 472938041 472937940 2.460000e-21 113.0
24 TraesCS2A01G544400 chrUn 84.348 115 15 1 2771 2885 135090633 135090522 3.180000e-20 110.0
25 TraesCS2A01G544400 chrUn 84.348 115 15 1 2771 2885 152687489 152687378 3.180000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G544400 chr2A 753702843 753705863 3020 False 5579.0 5579 100.0000 1 3021 1 chr2A.!!$F1 3020
1 TraesCS2A01G544400 chr2B 763876693 763879382 2689 False 1556.5 1753 87.6115 290 3021 2 chr2B.!!$F1 2731
2 TraesCS2A01G544400 chr2D 621972712 621978677 5965 False 699.6 1639 91.1498 290 3017 5 chr2D.!!$F1 2727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.037326 TCTGCCACGTGGATGAAGAC 60.037 55.0 38.3 18.37 37.39 3.01 F
132 133 0.037697 CGTGGATGAAGACCGGTCAA 60.038 55.0 35.0 20.76 0.00 3.18 F
1615 5122 0.106419 AAACAGACGGGGAAAAGGCA 60.106 50.0 0.0 0.00 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 5258 0.317770 CTTTGCATTGCGTTGGTCGT 60.318 50.0 3.84 0.00 42.13 4.34 R
1875 5382 0.527113 CATGGCAAAATCGACCAGCA 59.473 50.0 0.00 0.00 36.78 4.41 R
2886 6411 1.429930 TTAGCCGGGCTATGGATCAA 58.570 50.0 28.22 11.64 41.01 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.785258 GACTTGCGATGGTTCGGC 59.215 61.111 0.00 0.00 45.59 5.54
18 19 2.746277 ACTTGCGATGGTTCGGCC 60.746 61.111 0.00 0.00 45.59 6.13
19 20 3.864686 CTTGCGATGGTTCGGCCG 61.865 66.667 22.12 22.12 45.59 6.13
20 21 4.690719 TTGCGATGGTTCGGCCGT 62.691 61.111 27.15 4.54 45.59 5.68
23 24 4.444838 CGATGGTTCGGCCGTGGA 62.445 66.667 27.15 9.92 41.74 4.02
24 25 2.818274 GATGGTTCGGCCGTGGAC 60.818 66.667 27.15 20.91 41.21 4.02
51 52 3.484524 CAGTGCATGCAAGGTGTTC 57.515 52.632 24.58 8.13 0.00 3.18
52 53 0.669619 CAGTGCATGCAAGGTGTTCA 59.330 50.000 24.58 0.00 0.00 3.18
53 54 1.067364 CAGTGCATGCAAGGTGTTCAA 59.933 47.619 24.58 0.00 0.00 2.69
54 55 1.965643 AGTGCATGCAAGGTGTTCAAT 59.034 42.857 24.58 0.00 0.00 2.57
55 56 2.063266 GTGCATGCAAGGTGTTCAATG 58.937 47.619 24.58 0.00 0.00 2.82
56 57 1.962100 TGCATGCAAGGTGTTCAATGA 59.038 42.857 20.30 0.00 0.00 2.57
57 58 2.364647 TGCATGCAAGGTGTTCAATGAA 59.635 40.909 20.30 0.00 0.00 2.57
58 59 3.181468 TGCATGCAAGGTGTTCAATGAAA 60.181 39.130 20.30 0.00 0.00 2.69
59 60 3.998341 GCATGCAAGGTGTTCAATGAAAT 59.002 39.130 14.21 0.00 0.00 2.17
60 61 4.142988 GCATGCAAGGTGTTCAATGAAATG 60.143 41.667 14.21 0.00 0.00 2.32
61 62 3.391965 TGCAAGGTGTTCAATGAAATGC 58.608 40.909 0.00 4.87 0.00 3.56
62 63 2.738314 GCAAGGTGTTCAATGAAATGCC 59.262 45.455 0.00 0.55 0.00 4.40
63 64 3.555586 GCAAGGTGTTCAATGAAATGCCT 60.556 43.478 0.00 2.98 0.00 4.75
64 65 4.240096 CAAGGTGTTCAATGAAATGCCTC 58.760 43.478 12.37 0.00 0.00 4.70
65 66 3.499338 AGGTGTTCAATGAAATGCCTCA 58.501 40.909 0.00 0.00 0.00 3.86
66 67 3.896888 AGGTGTTCAATGAAATGCCTCAA 59.103 39.130 0.00 0.00 0.00 3.02
67 68 4.529377 AGGTGTTCAATGAAATGCCTCAAT 59.471 37.500 0.00 0.00 0.00 2.57
68 69 5.716228 AGGTGTTCAATGAAATGCCTCAATA 59.284 36.000 0.00 0.00 0.00 1.90
69 70 6.211184 AGGTGTTCAATGAAATGCCTCAATAA 59.789 34.615 0.00 0.00 0.00 1.40
70 71 6.532657 GGTGTTCAATGAAATGCCTCAATAAG 59.467 38.462 0.00 0.00 0.00 1.73
71 72 6.035327 GTGTTCAATGAAATGCCTCAATAAGC 59.965 38.462 0.00 0.00 0.00 3.09
72 73 5.266733 TCAATGAAATGCCTCAATAAGCC 57.733 39.130 0.00 0.00 0.00 4.35
73 74 4.710865 TCAATGAAATGCCTCAATAAGCCA 59.289 37.500 0.00 0.00 0.00 4.75
74 75 5.364446 TCAATGAAATGCCTCAATAAGCCAT 59.636 36.000 0.00 0.00 0.00 4.40
75 76 5.881923 ATGAAATGCCTCAATAAGCCATT 57.118 34.783 0.00 0.00 0.00 3.16
76 77 5.013568 TGAAATGCCTCAATAAGCCATTG 57.986 39.130 2.86 2.86 44.69 2.82
77 78 4.467082 TGAAATGCCTCAATAAGCCATTGT 59.533 37.500 8.13 0.00 43.88 2.71
78 79 4.395959 AATGCCTCAATAAGCCATTGTG 57.604 40.909 8.13 6.24 43.88 3.33
79 80 3.084536 TGCCTCAATAAGCCATTGTGA 57.915 42.857 10.64 0.00 43.88 3.58
80 81 3.018856 TGCCTCAATAAGCCATTGTGAG 58.981 45.455 10.64 4.35 43.88 3.51
81 82 3.282021 GCCTCAATAAGCCATTGTGAGA 58.718 45.455 10.64 0.00 43.88 3.27
82 83 3.696051 GCCTCAATAAGCCATTGTGAGAA 59.304 43.478 10.64 0.00 43.88 2.87
83 84 4.201990 GCCTCAATAAGCCATTGTGAGAAG 60.202 45.833 10.64 1.72 43.88 2.85
84 85 4.337555 CCTCAATAAGCCATTGTGAGAAGG 59.662 45.833 10.64 5.90 43.88 3.46
85 86 5.178096 TCAATAAGCCATTGTGAGAAGGA 57.822 39.130 8.13 0.00 43.88 3.36
86 87 5.569355 TCAATAAGCCATTGTGAGAAGGAA 58.431 37.500 8.13 0.00 43.88 3.36
87 88 5.415701 TCAATAAGCCATTGTGAGAAGGAAC 59.584 40.000 8.13 0.00 43.88 3.62
88 89 2.957402 AGCCATTGTGAGAAGGAACA 57.043 45.000 0.00 0.00 0.00 3.18
89 90 3.228188 AGCCATTGTGAGAAGGAACAA 57.772 42.857 0.00 0.00 40.36 2.83
90 91 3.152341 AGCCATTGTGAGAAGGAACAAG 58.848 45.455 0.00 0.00 39.50 3.16
91 92 2.229784 GCCATTGTGAGAAGGAACAAGG 59.770 50.000 0.00 0.00 39.50 3.61
92 93 3.490348 CCATTGTGAGAAGGAACAAGGT 58.510 45.455 0.00 0.00 39.50 3.50
93 94 4.651778 CCATTGTGAGAAGGAACAAGGTA 58.348 43.478 0.00 0.00 39.50 3.08
94 95 4.697352 CCATTGTGAGAAGGAACAAGGTAG 59.303 45.833 0.00 0.00 39.50 3.18
95 96 4.351874 TTGTGAGAAGGAACAAGGTAGG 57.648 45.455 0.00 0.00 32.66 3.18
96 97 3.583228 TGTGAGAAGGAACAAGGTAGGA 58.417 45.455 0.00 0.00 0.00 2.94
97 98 3.578716 TGTGAGAAGGAACAAGGTAGGAG 59.421 47.826 0.00 0.00 0.00 3.69
98 99 3.833070 GTGAGAAGGAACAAGGTAGGAGA 59.167 47.826 0.00 0.00 0.00 3.71
99 100 4.081917 GTGAGAAGGAACAAGGTAGGAGAG 60.082 50.000 0.00 0.00 0.00 3.20
100 101 4.202684 TGAGAAGGAACAAGGTAGGAGAGA 60.203 45.833 0.00 0.00 0.00 3.10
101 102 4.349365 AGAAGGAACAAGGTAGGAGAGAG 58.651 47.826 0.00 0.00 0.00 3.20
102 103 4.044825 AGAAGGAACAAGGTAGGAGAGAGA 59.955 45.833 0.00 0.00 0.00 3.10
103 104 4.405756 AGGAACAAGGTAGGAGAGAGAA 57.594 45.455 0.00 0.00 0.00 2.87
104 105 4.753186 AGGAACAAGGTAGGAGAGAGAAA 58.247 43.478 0.00 0.00 0.00 2.52
105 106 5.346270 AGGAACAAGGTAGGAGAGAGAAAT 58.654 41.667 0.00 0.00 0.00 2.17
106 107 5.788014 AGGAACAAGGTAGGAGAGAGAAATT 59.212 40.000 0.00 0.00 0.00 1.82
107 108 6.070481 AGGAACAAGGTAGGAGAGAGAAATTC 60.070 42.308 0.00 0.00 0.00 2.17
108 109 6.070481 GGAACAAGGTAGGAGAGAGAAATTCT 60.070 42.308 0.00 0.00 39.43 2.40
109 110 6.293004 ACAAGGTAGGAGAGAGAAATTCTG 57.707 41.667 0.00 0.00 35.87 3.02
110 111 5.115480 CAAGGTAGGAGAGAGAAATTCTGC 58.885 45.833 0.00 0.00 35.87 4.26
111 112 3.709141 AGGTAGGAGAGAGAAATTCTGCC 59.291 47.826 0.00 0.00 35.87 4.85
112 113 3.452627 GGTAGGAGAGAGAAATTCTGCCA 59.547 47.826 0.00 0.00 35.87 4.92
113 114 3.625649 AGGAGAGAGAAATTCTGCCAC 57.374 47.619 0.00 0.00 35.87 5.01
114 115 2.093764 AGGAGAGAGAAATTCTGCCACG 60.094 50.000 0.00 0.00 35.87 4.94
115 116 2.354203 GGAGAGAGAAATTCTGCCACGT 60.354 50.000 0.00 0.00 35.87 4.49
116 117 2.670414 GAGAGAGAAATTCTGCCACGTG 59.330 50.000 9.08 9.08 35.87 4.49
117 118 1.734465 GAGAGAAATTCTGCCACGTGG 59.266 52.381 30.66 30.66 35.87 4.94
118 119 1.347707 AGAGAAATTCTGCCACGTGGA 59.652 47.619 38.30 20.99 33.71 4.02
119 120 2.026822 AGAGAAATTCTGCCACGTGGAT 60.027 45.455 38.30 19.52 33.71 3.41
120 121 2.086869 AGAAATTCTGCCACGTGGATG 58.913 47.619 38.30 26.72 37.39 3.51
121 122 2.083774 GAAATTCTGCCACGTGGATGA 58.916 47.619 38.30 28.45 37.39 2.92
122 123 2.198827 AATTCTGCCACGTGGATGAA 57.801 45.000 38.30 33.68 37.39 2.57
123 124 1.742761 ATTCTGCCACGTGGATGAAG 58.257 50.000 38.30 25.59 37.39 3.02
124 125 0.684535 TTCTGCCACGTGGATGAAGA 59.315 50.000 38.30 27.25 37.39 2.87
125 126 0.037326 TCTGCCACGTGGATGAAGAC 60.037 55.000 38.30 18.37 37.39 3.01
126 127 1.003839 TGCCACGTGGATGAAGACC 60.004 57.895 38.30 17.61 37.39 3.85
127 128 2.100631 GCCACGTGGATGAAGACCG 61.101 63.158 38.30 7.80 37.39 4.79
128 129 1.447838 CCACGTGGATGAAGACCGG 60.448 63.158 31.31 0.00 37.39 5.28
129 130 1.292223 CACGTGGATGAAGACCGGT 59.708 57.895 6.92 6.92 0.00 5.28
130 131 0.736325 CACGTGGATGAAGACCGGTC 60.736 60.000 27.67 27.67 0.00 4.79
131 132 1.183030 ACGTGGATGAAGACCGGTCA 61.183 55.000 35.00 17.23 0.00 4.02
132 133 0.037697 CGTGGATGAAGACCGGTCAA 60.038 55.000 35.00 20.76 0.00 3.18
133 134 1.606994 CGTGGATGAAGACCGGTCAAA 60.607 52.381 35.00 20.40 0.00 2.69
134 135 2.500229 GTGGATGAAGACCGGTCAAAA 58.500 47.619 35.00 20.04 0.00 2.44
135 136 2.225727 GTGGATGAAGACCGGTCAAAAC 59.774 50.000 35.00 21.73 0.00 2.43
136 137 1.810755 GGATGAAGACCGGTCAAAACC 59.189 52.381 35.00 24.78 42.66 3.27
137 138 2.500229 GATGAAGACCGGTCAAAACCA 58.500 47.619 35.00 22.95 46.86 3.67
138 139 1.670791 TGAAGACCGGTCAAAACCAC 58.329 50.000 35.00 17.26 46.86 4.16
139 140 1.065345 TGAAGACCGGTCAAAACCACA 60.065 47.619 35.00 19.34 46.86 4.17
140 141 1.332686 GAAGACCGGTCAAAACCACAC 59.667 52.381 35.00 5.89 46.86 3.82
141 142 0.544697 AGACCGGTCAAAACCACACT 59.455 50.000 35.00 8.65 46.86 3.55
142 143 0.661020 GACCGGTCAAAACCACACTG 59.339 55.000 29.75 0.00 46.86 3.66
143 144 0.253610 ACCGGTCAAAACCACACTGA 59.746 50.000 0.00 0.00 46.86 3.41
144 145 0.944386 CCGGTCAAAACCACACTGAG 59.056 55.000 0.00 0.00 46.86 3.35
145 146 1.663695 CGGTCAAAACCACACTGAGT 58.336 50.000 0.00 0.00 46.86 3.41
146 147 1.597663 CGGTCAAAACCACACTGAGTC 59.402 52.381 0.00 0.00 46.86 3.36
147 148 2.639065 GGTCAAAACCACACTGAGTCA 58.361 47.619 0.00 0.00 45.68 3.41
148 149 2.614057 GGTCAAAACCACACTGAGTCAG 59.386 50.000 18.83 18.83 45.68 3.51
149 150 3.270877 GTCAAAACCACACTGAGTCAGT 58.729 45.455 20.34 20.34 46.51 3.41
150 151 4.439057 GTCAAAACCACACTGAGTCAGTA 58.561 43.478 25.04 3.98 43.43 2.74
151 152 4.508124 GTCAAAACCACACTGAGTCAGTAG 59.492 45.833 25.04 19.94 43.43 2.57
152 153 2.821991 AACCACACTGAGTCAGTAGC 57.178 50.000 25.04 0.00 43.43 3.58
153 154 0.598562 ACCACACTGAGTCAGTAGCG 59.401 55.000 25.04 15.48 43.43 4.26
154 155 0.881796 CCACACTGAGTCAGTAGCGA 59.118 55.000 25.04 0.00 43.43 4.93
155 156 1.474478 CCACACTGAGTCAGTAGCGAT 59.526 52.381 25.04 6.43 43.43 4.58
156 157 2.683362 CCACACTGAGTCAGTAGCGATA 59.317 50.000 25.04 0.00 43.43 2.92
157 158 3.487711 CCACACTGAGTCAGTAGCGATAC 60.488 52.174 25.04 1.72 43.43 2.24
158 159 2.683867 ACACTGAGTCAGTAGCGATACC 59.316 50.000 25.04 0.00 43.43 2.73
159 160 1.941294 ACTGAGTCAGTAGCGATACCG 59.059 52.381 24.36 0.00 43.46 4.02
160 161 1.264557 CTGAGTCAGTAGCGATACCGG 59.735 57.143 12.28 0.00 36.06 5.28
161 162 0.592148 GAGTCAGTAGCGATACCGGG 59.408 60.000 6.32 0.00 36.06 5.73
162 163 0.106819 AGTCAGTAGCGATACCGGGT 60.107 55.000 6.32 4.46 36.06 5.28
163 164 0.310232 GTCAGTAGCGATACCGGGTC 59.690 60.000 6.32 2.17 36.06 4.46
164 165 0.107066 TCAGTAGCGATACCGGGTCA 60.107 55.000 6.32 0.00 36.06 4.02
165 166 0.742505 CAGTAGCGATACCGGGTCAA 59.257 55.000 6.32 0.00 36.06 3.18
166 167 0.743097 AGTAGCGATACCGGGTCAAC 59.257 55.000 6.32 2.58 36.06 3.18
167 168 0.249197 GTAGCGATACCGGGTCAACC 60.249 60.000 6.32 0.00 36.06 3.77
176 177 4.695560 GGGTCAACCGAGACAAGG 57.304 61.111 0.00 0.00 40.29 3.61
177 178 1.003718 GGGTCAACCGAGACAAGGG 60.004 63.158 0.00 0.00 40.29 3.95
178 179 1.477685 GGGTCAACCGAGACAAGGGA 61.478 60.000 0.00 0.00 40.29 4.20
179 180 0.320508 GGTCAACCGAGACAAGGGAC 60.321 60.000 0.00 0.00 40.29 4.46
180 181 2.711146 GGTCAACCGAGACAAGGGACT 61.711 57.143 0.00 0.00 40.29 3.85
181 182 1.891150 GTCAACCGAGACAAGGGACTA 59.109 52.381 0.00 0.00 38.49 2.59
182 183 2.298163 GTCAACCGAGACAAGGGACTAA 59.702 50.000 0.00 0.00 38.49 2.24
183 184 2.967201 TCAACCGAGACAAGGGACTAAA 59.033 45.455 0.00 0.00 38.49 1.85
184 185 3.064931 CAACCGAGACAAGGGACTAAAC 58.935 50.000 0.00 0.00 38.49 2.01
185 186 2.606378 ACCGAGACAAGGGACTAAACT 58.394 47.619 0.00 0.00 38.49 2.66
186 187 2.970640 ACCGAGACAAGGGACTAAACTT 59.029 45.455 0.00 0.00 38.49 2.66
197 198 3.469739 GGACTAAACTTGTCCGGTTTCA 58.530 45.455 0.00 0.00 43.55 2.69
198 199 3.878699 GGACTAAACTTGTCCGGTTTCAA 59.121 43.478 0.00 5.37 43.55 2.69
199 200 4.024302 GGACTAAACTTGTCCGGTTTCAAG 60.024 45.833 23.76 23.76 43.55 3.02
200 201 4.773013 ACTAAACTTGTCCGGTTTCAAGA 58.227 39.130 28.45 14.79 42.22 3.02
201 202 4.814771 ACTAAACTTGTCCGGTTTCAAGAG 59.185 41.667 28.45 21.39 42.22 2.85
202 203 3.277142 AACTTGTCCGGTTTCAAGAGT 57.723 42.857 28.45 18.76 42.22 3.24
203 204 3.277142 ACTTGTCCGGTTTCAAGAGTT 57.723 42.857 28.45 13.84 42.22 3.01
204 205 4.411256 ACTTGTCCGGTTTCAAGAGTTA 57.589 40.909 28.45 0.00 42.22 2.24
205 206 4.377897 ACTTGTCCGGTTTCAAGAGTTAG 58.622 43.478 28.45 13.00 42.22 2.34
206 207 3.396260 TGTCCGGTTTCAAGAGTTAGG 57.604 47.619 0.00 0.00 0.00 2.69
207 208 2.038033 TGTCCGGTTTCAAGAGTTAGGG 59.962 50.000 0.00 0.00 0.00 3.53
208 209 2.301009 GTCCGGTTTCAAGAGTTAGGGA 59.699 50.000 0.00 0.00 0.00 4.20
209 210 3.055312 GTCCGGTTTCAAGAGTTAGGGAT 60.055 47.826 0.00 0.00 0.00 3.85
210 211 3.055385 TCCGGTTTCAAGAGTTAGGGATG 60.055 47.826 0.00 0.00 0.00 3.51
211 212 2.678336 CGGTTTCAAGAGTTAGGGATGC 59.322 50.000 0.00 0.00 0.00 3.91
212 213 3.686016 GGTTTCAAGAGTTAGGGATGCA 58.314 45.455 0.00 0.00 0.00 3.96
213 214 4.079253 GGTTTCAAGAGTTAGGGATGCAA 58.921 43.478 0.00 0.00 0.00 4.08
214 215 4.156739 GGTTTCAAGAGTTAGGGATGCAAG 59.843 45.833 0.00 0.00 0.00 4.01
215 216 4.640771 TTCAAGAGTTAGGGATGCAAGT 57.359 40.909 0.00 0.00 0.00 3.16
216 217 4.640771 TCAAGAGTTAGGGATGCAAGTT 57.359 40.909 0.00 0.00 0.00 2.66
217 218 4.326826 TCAAGAGTTAGGGATGCAAGTTG 58.673 43.478 0.00 0.00 0.00 3.16
218 219 4.074970 CAAGAGTTAGGGATGCAAGTTGT 58.925 43.478 4.48 0.00 0.00 3.32
219 220 3.944087 AGAGTTAGGGATGCAAGTTGTC 58.056 45.455 4.48 0.00 0.00 3.18
220 221 3.584848 AGAGTTAGGGATGCAAGTTGTCT 59.415 43.478 4.48 0.00 0.00 3.41
221 222 3.679389 AGTTAGGGATGCAAGTTGTCTG 58.321 45.455 4.48 0.00 0.00 3.51
222 223 2.749621 GTTAGGGATGCAAGTTGTCTGG 59.250 50.000 4.48 0.00 0.00 3.86
223 224 0.773644 AGGGATGCAAGTTGTCTGGT 59.226 50.000 4.48 0.00 0.00 4.00
224 225 1.145738 AGGGATGCAAGTTGTCTGGTT 59.854 47.619 4.48 0.00 0.00 3.67
225 226 1.963515 GGGATGCAAGTTGTCTGGTTT 59.036 47.619 4.48 0.00 0.00 3.27
226 227 2.365293 GGGATGCAAGTTGTCTGGTTTT 59.635 45.455 4.48 0.00 0.00 2.43
227 228 3.383761 GGATGCAAGTTGTCTGGTTTTG 58.616 45.455 4.48 0.00 0.00 2.44
228 229 3.068024 GGATGCAAGTTGTCTGGTTTTGA 59.932 43.478 4.48 0.00 0.00 2.69
229 230 4.441356 GGATGCAAGTTGTCTGGTTTTGAA 60.441 41.667 4.48 0.00 0.00 2.69
230 231 3.843999 TGCAAGTTGTCTGGTTTTGAAC 58.156 40.909 4.48 0.00 0.00 3.18
231 232 3.509575 TGCAAGTTGTCTGGTTTTGAACT 59.490 39.130 4.48 0.00 0.00 3.01
232 233 4.021544 TGCAAGTTGTCTGGTTTTGAACTT 60.022 37.500 4.48 0.00 37.34 2.66
234 235 5.975693 AAGTTGTCTGGTTTTGAACTTGA 57.024 34.783 0.00 0.00 35.92 3.02
235 236 5.567138 AGTTGTCTGGTTTTGAACTTGAG 57.433 39.130 0.00 0.00 0.00 3.02
236 237 4.399303 AGTTGTCTGGTTTTGAACTTGAGG 59.601 41.667 0.00 0.00 0.00 3.86
237 238 3.287222 TGTCTGGTTTTGAACTTGAGGG 58.713 45.455 0.00 0.00 0.00 4.30
238 239 3.053991 TGTCTGGTTTTGAACTTGAGGGA 60.054 43.478 0.00 0.00 0.00 4.20
239 240 3.315470 GTCTGGTTTTGAACTTGAGGGAC 59.685 47.826 0.00 0.00 0.00 4.46
241 242 4.410883 TCTGGTTTTGAACTTGAGGGACTA 59.589 41.667 0.00 0.00 41.55 2.59
242 243 5.104277 TCTGGTTTTGAACTTGAGGGACTAA 60.104 40.000 0.00 0.00 41.55 2.24
243 244 5.130350 TGGTTTTGAACTTGAGGGACTAAG 58.870 41.667 0.00 0.00 41.55 2.18
244 245 5.131067 GGTTTTGAACTTGAGGGACTAAGT 58.869 41.667 0.00 0.00 41.55 2.24
245 246 5.238868 GGTTTTGAACTTGAGGGACTAAGTC 59.761 44.000 0.00 0.00 41.55 3.01
246 247 5.888982 TTTGAACTTGAGGGACTAAGTCT 57.111 39.130 0.00 0.00 41.55 3.24
247 248 6.989155 TTTGAACTTGAGGGACTAAGTCTA 57.011 37.500 0.00 0.00 41.55 2.59
248 249 6.591750 TTGAACTTGAGGGACTAAGTCTAG 57.408 41.667 0.00 0.00 41.55 2.43
249 250 5.888901 TGAACTTGAGGGACTAAGTCTAGA 58.111 41.667 0.00 0.00 41.55 2.43
250 251 5.711036 TGAACTTGAGGGACTAAGTCTAGAC 59.289 44.000 15.41 15.41 41.55 2.59
251 252 5.523883 ACTTGAGGGACTAAGTCTAGACT 57.476 43.478 20.00 20.00 41.55 3.24
253 254 6.316513 ACTTGAGGGACTAAGTCTAGACTTT 58.683 40.000 36.24 23.26 44.81 2.66
254 255 6.209788 ACTTGAGGGACTAAGTCTAGACTTTG 59.790 42.308 36.24 34.05 44.81 2.77
255 256 4.463186 TGAGGGACTAAGTCTAGACTTTGC 59.537 45.833 36.24 27.46 44.81 3.68
256 257 4.142116 GAGGGACTAAGTCTAGACTTTGCC 60.142 50.000 36.24 31.60 44.81 4.52
257 258 6.563073 GAGGGACTAAGTCTAGACTTTGCCA 61.563 48.000 36.24 21.01 44.81 4.92
258 259 7.977887 GAGGGACTAAGTCTAGACTTTGCCAA 61.978 46.154 36.24 20.68 44.81 4.52
259 260 9.361969 GAGGGACTAAGTCTAGACTTTGCCAAA 62.362 44.444 36.24 20.04 44.81 3.28
265 266 6.959639 AGTCTAGACTTTGCCAAAAATTGA 57.040 33.333 20.00 0.00 38.83 2.57
266 267 6.974965 AGTCTAGACTTTGCCAAAAATTGAG 58.025 36.000 20.00 0.00 38.83 3.02
267 268 6.015940 AGTCTAGACTTTGCCAAAAATTGAGG 60.016 38.462 20.00 0.00 38.83 3.86
268 269 4.341366 AGACTTTGCCAAAAATTGAGGG 57.659 40.909 0.00 0.00 0.00 4.30
269 270 3.966665 AGACTTTGCCAAAAATTGAGGGA 59.033 39.130 0.00 0.00 0.00 4.20
270 271 4.058124 GACTTTGCCAAAAATTGAGGGAC 58.942 43.478 0.00 0.00 0.00 4.46
271 272 2.810439 TTGCCAAAAATTGAGGGACG 57.190 45.000 0.00 0.00 0.00 4.79
272 273 1.988293 TGCCAAAAATTGAGGGACGA 58.012 45.000 0.00 0.00 0.00 4.20
273 274 2.311463 TGCCAAAAATTGAGGGACGAA 58.689 42.857 0.00 0.00 0.00 3.85
274 275 2.695666 TGCCAAAAATTGAGGGACGAAA 59.304 40.909 0.00 0.00 0.00 3.46
275 276 3.133003 TGCCAAAAATTGAGGGACGAAAA 59.867 39.130 0.00 0.00 0.00 2.29
276 277 3.740832 GCCAAAAATTGAGGGACGAAAAG 59.259 43.478 0.00 0.00 0.00 2.27
277 278 4.739436 GCCAAAAATTGAGGGACGAAAAGT 60.739 41.667 0.00 0.00 0.00 2.66
278 279 5.508320 GCCAAAAATTGAGGGACGAAAAGTA 60.508 40.000 0.00 0.00 0.00 2.24
279 280 6.687604 CCAAAAATTGAGGGACGAAAAGTAT 58.312 36.000 0.00 0.00 0.00 2.12
280 281 7.576098 GCCAAAAATTGAGGGACGAAAAGTATA 60.576 37.037 0.00 0.00 0.00 1.47
281 282 7.753580 CCAAAAATTGAGGGACGAAAAGTATAC 59.246 37.037 0.00 0.00 0.00 1.47
282 283 8.512138 CAAAAATTGAGGGACGAAAAGTATACT 58.488 33.333 0.00 0.00 0.00 2.12
283 284 8.631480 AAAATTGAGGGACGAAAAGTATACTT 57.369 30.769 12.50 12.50 37.91 2.24
514 537 6.629128 TGCATGACCATTTTATCAAATCGTT 58.371 32.000 0.00 0.00 29.41 3.85
515 538 7.766283 TGCATGACCATTTTATCAAATCGTTA 58.234 30.769 0.00 0.00 29.41 3.18
516 539 8.246871 TGCATGACCATTTTATCAAATCGTTAA 58.753 29.630 0.00 0.00 29.41 2.01
517 540 8.531530 GCATGACCATTTTATCAAATCGTTAAC 58.468 33.333 0.00 0.00 29.41 2.01
518 541 9.566530 CATGACCATTTTATCAAATCGTTAACA 57.433 29.630 6.39 0.00 29.41 2.41
519 542 8.958175 TGACCATTTTATCAAATCGTTAACAC 57.042 30.769 6.39 0.00 29.41 3.32
722 748 2.705658 TGAATCCCTTGATCGGCATACT 59.294 45.455 0.00 0.00 0.00 2.12
737 763 1.064505 CATACTGATGCTTGGTTGGCG 59.935 52.381 0.00 0.00 0.00 5.69
807 4287 3.691049 TGACAACTTTTCCAAAGCGAG 57.309 42.857 0.00 0.00 0.00 5.03
814 4294 5.629079 ACTTTTCCAAAGCGAGGAATAAG 57.371 39.130 8.11 13.92 44.14 1.73
829 4309 7.330700 GCGAGGAATAAGACGTACTACTACTAT 59.669 40.741 0.00 0.00 0.00 2.12
830 4310 9.847706 CGAGGAATAAGACGTACTACTACTATA 57.152 37.037 0.00 0.00 0.00 1.31
878 4366 0.970937 TGACCCTCGTGTCCATCCTC 60.971 60.000 0.00 0.00 34.25 3.71
910 4400 8.417780 TTCGACTAGTCTACAACTCTACATAC 57.582 38.462 20.34 0.00 39.55 2.39
1029 4531 1.609320 GGAGACAACCTGAAGCTGGTC 60.609 57.143 0.00 0.00 34.63 4.02
1119 4621 1.460305 CGTGGAGATGGAGGGGGAT 60.460 63.158 0.00 0.00 0.00 3.85
1185 4687 2.821366 CTGCCGGTGCTGATCCAC 60.821 66.667 1.90 0.00 38.61 4.02
1206 4708 4.643387 GGCAAGCCTGTCCGTGGT 62.643 66.667 3.29 0.00 0.00 4.16
1207 4709 2.594592 GCAAGCCTGTCCGTGGTT 60.595 61.111 0.00 0.00 0.00 3.67
1212 4714 2.048503 CCTGTCCGTGGTTCGTCC 60.049 66.667 0.00 0.00 37.94 4.79
1284 4786 4.444081 CTCCCCGACGACCCCTCT 62.444 72.222 0.00 0.00 0.00 3.69
1293 4795 3.695606 GACCCCTCTGAGCGTGCA 61.696 66.667 0.00 0.00 0.00 4.57
1321 4823 2.159099 CGCTACTGGGCTGACTTTATCA 60.159 50.000 0.00 0.00 35.45 2.15
1336 4838 6.119144 ACTTTATCAATGACACGGTATTGC 57.881 37.500 0.00 0.00 34.96 3.56
1423 4929 3.708563 TTCTACACGCATGATCGATCA 57.291 42.857 29.09 29.09 41.70 2.92
1434 4940 7.528516 CACGCATGATCGATCAACTTTAATTAG 59.471 37.037 30.41 14.69 40.69 1.73
1443 4949 8.600625 TCGATCAACTTTAATTAGATTTGTCGG 58.399 33.333 18.57 7.89 0.00 4.79
1447 4953 8.573035 TCAACTTTAATTAGATTTGTCGGCTTT 58.427 29.630 6.14 0.00 0.00 3.51
1459 4965 3.081061 TGTCGGCTTTGTATGCTTTGAT 58.919 40.909 0.00 0.00 0.00 2.57
1494 5001 8.899427 TGTATCTCTATATATACTACCACGGC 57.101 38.462 0.00 0.00 31.24 5.68
1495 5002 7.654923 TGTATCTCTATATATACTACCACGGCG 59.345 40.741 4.80 4.80 31.24 6.46
1496 5003 5.363101 TCTCTATATATACTACCACGGCGG 58.637 45.833 13.24 0.00 42.50 6.13
1497 5004 5.129320 TCTCTATATATACTACCACGGCGGA 59.871 44.000 13.24 0.00 38.63 5.54
1498 5005 5.933617 TCTATATATACTACCACGGCGGAT 58.066 41.667 13.24 0.00 38.63 4.18
1499 5006 6.359804 TCTATATATACTACCACGGCGGATT 58.640 40.000 13.24 0.00 38.63 3.01
1500 5007 3.863142 ATATACTACCACGGCGGATTC 57.137 47.619 13.24 0.00 38.63 2.52
1501 5008 1.700955 ATACTACCACGGCGGATTCT 58.299 50.000 13.24 0.00 38.63 2.40
1502 5009 1.027357 TACTACCACGGCGGATTCTC 58.973 55.000 13.24 0.00 38.63 2.87
1503 5010 0.968901 ACTACCACGGCGGATTCTCA 60.969 55.000 13.24 0.00 38.63 3.27
1504 5011 0.174845 CTACCACGGCGGATTCTCAA 59.825 55.000 13.24 0.00 38.63 3.02
1505 5012 0.609151 TACCACGGCGGATTCTCAAA 59.391 50.000 13.24 0.00 38.63 2.69
1506 5013 0.250553 ACCACGGCGGATTCTCAAAA 60.251 50.000 13.24 0.00 38.63 2.44
1507 5014 0.878416 CCACGGCGGATTCTCAAAAA 59.122 50.000 13.24 0.00 36.56 1.94
1543 5050 5.294356 CCACAGCGGTGTTATTATAGCTTA 58.706 41.667 19.29 0.00 43.71 3.09
1546 5053 7.764443 CCACAGCGGTGTTATTATAGCTTATAT 59.236 37.037 19.29 0.00 43.71 0.86
1548 5055 7.701078 ACAGCGGTGTTATTATAGCTTATATCG 59.299 37.037 15.81 0.00 30.30 2.92
1609 5116 2.031465 GGCGAAACAGACGGGGAA 59.969 61.111 0.00 0.00 0.00 3.97
1615 5122 0.106419 AAACAGACGGGGAAAAGGCA 60.106 50.000 0.00 0.00 0.00 4.75
1616 5123 0.106419 AACAGACGGGGAAAAGGCAA 60.106 50.000 0.00 0.00 0.00 4.52
1633 5140 1.620822 CAAAGGGGAAGAACCAGGTG 58.379 55.000 0.00 0.00 41.20 4.00
1701 5208 1.928868 CCCTTCTTTGGAGGCAACAT 58.071 50.000 0.00 0.00 41.41 2.71
1708 5215 0.893270 TTGGAGGCAACATTGTCGGG 60.893 55.000 0.00 0.00 37.98 5.14
1720 5227 3.278574 CATTGTCGGGTATGTGGATGTT 58.721 45.455 0.00 0.00 0.00 2.71
1732 5239 2.690778 GGATGTTGTGCTCGGTGGC 61.691 63.158 0.00 0.00 0.00 5.01
1740 5247 3.435186 GCTCGGTGGCCTTCTTGC 61.435 66.667 3.32 0.00 0.00 4.01
1741 5248 2.032528 CTCGGTGGCCTTCTTGCA 59.967 61.111 3.32 0.00 0.00 4.08
1769 5276 0.593518 CACGACCAACGCAATGCAAA 60.594 50.000 5.91 0.00 46.94 3.68
1774 5281 1.134848 ACCAACGCAATGCAAAGTGTT 60.135 42.857 5.91 13.05 38.86 3.32
1784 5291 5.735922 GCAATGCAAAGTGTTAAGACCTTCA 60.736 40.000 0.00 0.00 0.00 3.02
1801 5308 1.302431 CAACGACCCTGCCATCACA 60.302 57.895 0.00 0.00 0.00 3.58
1804 5311 2.436646 GACCCTGCCATCACACCG 60.437 66.667 0.00 0.00 0.00 4.94
1871 5378 3.465701 TGGTCATGCCAGACGTGA 58.534 55.556 0.00 0.00 43.61 4.35
1875 5382 1.406069 GGTCATGCCAGACGTGAGAAT 60.406 52.381 0.00 0.00 45.00 2.40
1963 5470 6.764094 TCGTCGTTTACCTATATGTTTTTGC 58.236 36.000 0.00 0.00 0.00 3.68
2057 5564 1.157585 GAAACCCTTGTTCTCGCCTC 58.842 55.000 0.00 0.00 32.15 4.70
2241 5748 8.729756 TGTTAGTCATCACATGGTATTTTCTTG 58.270 33.333 0.00 0.00 0.00 3.02
2257 5764 0.535335 CTTGCCCTCTACAAGCCGTA 59.465 55.000 0.00 0.00 38.23 4.02
2428 5935 5.181056 AGTTTCATTGTGTGCATCGTCAATA 59.819 36.000 0.00 0.00 0.00 1.90
2459 5966 6.003326 TGAGGAGCATTGTAAAGAAACATGA 58.997 36.000 0.00 0.00 0.00 3.07
2533 6040 5.890985 TCAGAAGGTTCAATTGTCCAGAAAA 59.109 36.000 18.86 0.00 0.00 2.29
2540 6047 7.712205 AGGTTCAATTGTCCAGAAAAATGAAAG 59.288 33.333 18.86 0.00 0.00 2.62
2553 6060 6.596888 AGAAAAATGAAAGCATCGAGATCTGA 59.403 34.615 0.00 0.00 32.35 3.27
2594 6101 1.065199 GGTCATGAGGTGGCATCTTCA 60.065 52.381 0.00 1.80 32.76 3.02
2598 6105 0.247460 TGAGGTGGCATCTTCAGTCG 59.753 55.000 0.00 0.00 0.00 4.18
2644 6151 5.099575 CGAAAATGCCTTGGTTATGTTACC 58.900 41.667 0.00 0.00 38.73 2.85
2645 6152 5.336055 CGAAAATGCCTTGGTTATGTTACCA 60.336 40.000 0.00 0.00 46.23 3.25
2702 6211 3.969312 TGATGATCTGGATGTGCTCCTAA 59.031 43.478 0.00 0.00 45.21 2.69
2705 6214 5.474578 TGATCTGGATGTGCTCCTAATAC 57.525 43.478 0.00 0.00 45.21 1.89
2720 6229 9.045745 TGCTCCTAATACCATATATTCATCACA 57.954 33.333 0.00 0.00 0.00 3.58
2730 6239 9.631257 ACCATATATTCATCACATGTTTGAAGA 57.369 29.630 20.03 17.39 33.26 2.87
2731 6240 9.888878 CCATATATTCATCACATGTTTGAAGAC 57.111 33.333 20.03 0.00 33.26 3.01
2733 6242 5.947228 ATTCATCACATGTTTGAAGACGT 57.053 34.783 20.03 0.00 33.26 4.34
2734 6243 5.749596 TTCATCACATGTTTGAAGACGTT 57.250 34.783 14.20 0.00 0.00 3.99
2736 6245 5.509771 TCATCACATGTTTGAAGACGTTTG 58.490 37.500 0.00 0.00 0.00 2.93
2737 6246 3.690422 TCACATGTTTGAAGACGTTTGC 58.310 40.909 0.00 0.00 0.00 3.68
2753 6278 5.837437 ACGTTTGCCAGAAAAATCATACAA 58.163 33.333 0.00 0.00 0.00 2.41
2789 6314 5.779241 TCCTGAAATGATACTCAACCCTT 57.221 39.130 0.00 0.00 0.00 3.95
2794 6319 7.148171 CCTGAAATGATACTCAACCCTTTCTTC 60.148 40.741 0.00 0.00 28.46 2.87
2797 6322 7.510675 AATGATACTCAACCCTTTCTTCCTA 57.489 36.000 0.00 0.00 0.00 2.94
2801 6326 5.167303 ACTCAACCCTTTCTTCCTACATC 57.833 43.478 0.00 0.00 0.00 3.06
2855 6380 2.321719 TGGCATGCCCGATACTACTAA 58.678 47.619 33.44 7.63 35.87 2.24
2886 6411 6.903340 ACTCCCATTACAGGTAACCTTATT 57.097 37.500 0.00 0.00 37.17 1.40
2910 6435 1.771854 TCCATAGCCCGGCTAAATCAA 59.228 47.619 23.02 0.98 44.62 2.57
2962 6487 2.941891 TTTCGCGTGTCTTTCATCAC 57.058 45.000 5.77 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.818274 GTCCACGGCCGAACCATC 60.818 66.667 35.90 12.82 39.03 3.51
8 9 4.752879 CGTCCACGGCCGAACCAT 62.753 66.667 35.90 5.52 39.03 3.55
33 34 0.669619 TGAACACCTTGCATGCACTG 59.330 50.000 22.58 17.72 0.00 3.66
34 35 1.401761 TTGAACACCTTGCATGCACT 58.598 45.000 22.58 2.44 0.00 4.40
35 36 2.063266 CATTGAACACCTTGCATGCAC 58.937 47.619 22.58 7.64 0.00 4.57
36 37 1.962100 TCATTGAACACCTTGCATGCA 59.038 42.857 18.46 18.46 0.00 3.96
37 38 2.728690 TCATTGAACACCTTGCATGC 57.271 45.000 11.82 11.82 0.00 4.06
38 39 4.142988 GCATTTCATTGAACACCTTGCATG 60.143 41.667 0.00 0.00 0.00 4.06
39 40 3.998341 GCATTTCATTGAACACCTTGCAT 59.002 39.130 0.00 0.00 0.00 3.96
40 41 3.391965 GCATTTCATTGAACACCTTGCA 58.608 40.909 0.00 0.00 0.00 4.08
41 42 2.738314 GGCATTTCATTGAACACCTTGC 59.262 45.455 0.00 4.23 0.00 4.01
42 43 4.240096 GAGGCATTTCATTGAACACCTTG 58.760 43.478 12.79 3.22 0.00 3.61
43 44 3.896888 TGAGGCATTTCATTGAACACCTT 59.103 39.130 12.79 1.62 0.00 3.50
44 45 3.499338 TGAGGCATTTCATTGAACACCT 58.501 40.909 11.83 11.83 0.00 4.00
45 46 3.940209 TGAGGCATTTCATTGAACACC 57.060 42.857 0.00 1.34 0.00 4.16
46 47 6.035327 GCTTATTGAGGCATTTCATTGAACAC 59.965 38.462 0.00 0.00 0.00 3.32
47 48 6.101332 GCTTATTGAGGCATTTCATTGAACA 58.899 36.000 0.00 0.00 0.00 3.18
48 49 6.579491 GCTTATTGAGGCATTTCATTGAAC 57.421 37.500 0.00 0.00 0.00 3.18
65 66 5.324409 TGTTCCTTCTCACAATGGCTTATT 58.676 37.500 0.00 0.00 0.00 1.40
66 67 4.922206 TGTTCCTTCTCACAATGGCTTAT 58.078 39.130 0.00 0.00 0.00 1.73
67 68 4.365514 TGTTCCTTCTCACAATGGCTTA 57.634 40.909 0.00 0.00 0.00 3.09
68 69 3.228188 TGTTCCTTCTCACAATGGCTT 57.772 42.857 0.00 0.00 0.00 4.35
69 70 2.957402 TGTTCCTTCTCACAATGGCT 57.043 45.000 0.00 0.00 0.00 4.75
70 71 2.229784 CCTTGTTCCTTCTCACAATGGC 59.770 50.000 0.00 0.00 32.50 4.40
71 72 3.490348 ACCTTGTTCCTTCTCACAATGG 58.510 45.455 0.00 0.00 32.50 3.16
72 73 4.697352 CCTACCTTGTTCCTTCTCACAATG 59.303 45.833 0.00 0.00 32.50 2.82
73 74 4.597507 TCCTACCTTGTTCCTTCTCACAAT 59.402 41.667 0.00 0.00 32.50 2.71
74 75 3.971305 TCCTACCTTGTTCCTTCTCACAA 59.029 43.478 0.00 0.00 0.00 3.33
75 76 3.578716 CTCCTACCTTGTTCCTTCTCACA 59.421 47.826 0.00 0.00 0.00 3.58
76 77 3.833070 TCTCCTACCTTGTTCCTTCTCAC 59.167 47.826 0.00 0.00 0.00 3.51
77 78 4.090090 CTCTCCTACCTTGTTCCTTCTCA 58.910 47.826 0.00 0.00 0.00 3.27
78 79 4.345854 TCTCTCCTACCTTGTTCCTTCTC 58.654 47.826 0.00 0.00 0.00 2.87
79 80 4.044825 TCTCTCTCCTACCTTGTTCCTTCT 59.955 45.833 0.00 0.00 0.00 2.85
80 81 4.345854 TCTCTCTCCTACCTTGTTCCTTC 58.654 47.826 0.00 0.00 0.00 3.46
81 82 4.405756 TCTCTCTCCTACCTTGTTCCTT 57.594 45.455 0.00 0.00 0.00 3.36
82 83 4.405756 TTCTCTCTCCTACCTTGTTCCT 57.594 45.455 0.00 0.00 0.00 3.36
83 84 5.685520 ATTTCTCTCTCCTACCTTGTTCC 57.314 43.478 0.00 0.00 0.00 3.62
84 85 6.816140 CAGAATTTCTCTCTCCTACCTTGTTC 59.184 42.308 0.00 0.00 29.07 3.18
85 86 6.706295 CAGAATTTCTCTCTCCTACCTTGTT 58.294 40.000 0.00 0.00 29.07 2.83
86 87 5.337975 GCAGAATTTCTCTCTCCTACCTTGT 60.338 44.000 0.00 0.00 29.07 3.16
87 88 5.115480 GCAGAATTTCTCTCTCCTACCTTG 58.885 45.833 0.00 0.00 29.07 3.61
88 89 4.163268 GGCAGAATTTCTCTCTCCTACCTT 59.837 45.833 0.00 0.00 29.07 3.50
89 90 3.709141 GGCAGAATTTCTCTCTCCTACCT 59.291 47.826 0.00 0.00 29.07 3.08
90 91 3.452627 TGGCAGAATTTCTCTCTCCTACC 59.547 47.826 0.00 0.00 29.07 3.18
91 92 4.438148 GTGGCAGAATTTCTCTCTCCTAC 58.562 47.826 0.00 0.00 29.07 3.18
92 93 3.131223 CGTGGCAGAATTTCTCTCTCCTA 59.869 47.826 0.00 0.00 29.07 2.94
93 94 2.093764 CGTGGCAGAATTTCTCTCTCCT 60.094 50.000 0.00 0.00 29.07 3.69
94 95 2.275318 CGTGGCAGAATTTCTCTCTCC 58.725 52.381 0.00 0.00 29.07 3.71
95 96 2.670414 CACGTGGCAGAATTTCTCTCTC 59.330 50.000 7.95 0.00 29.07 3.20
96 97 2.613977 CCACGTGGCAGAATTTCTCTCT 60.614 50.000 24.02 0.00 29.07 3.10
97 98 1.734465 CCACGTGGCAGAATTTCTCTC 59.266 52.381 24.02 0.00 29.07 3.20
98 99 1.347707 TCCACGTGGCAGAATTTCTCT 59.652 47.619 30.25 0.00 34.44 3.10
99 100 1.808411 TCCACGTGGCAGAATTTCTC 58.192 50.000 30.25 0.00 34.44 2.87
100 101 2.086869 CATCCACGTGGCAGAATTTCT 58.913 47.619 30.25 2.49 34.44 2.52
101 102 2.083774 TCATCCACGTGGCAGAATTTC 58.916 47.619 30.25 0.00 34.44 2.17
102 103 2.198827 TCATCCACGTGGCAGAATTT 57.801 45.000 30.25 5.13 34.44 1.82
103 104 2.086869 CTTCATCCACGTGGCAGAATT 58.913 47.619 30.25 6.92 34.44 2.17
104 105 1.278985 TCTTCATCCACGTGGCAGAAT 59.721 47.619 30.25 15.22 34.44 2.40
105 106 0.684535 TCTTCATCCACGTGGCAGAA 59.315 50.000 30.25 28.96 34.44 3.02
106 107 0.037326 GTCTTCATCCACGTGGCAGA 60.037 55.000 30.25 24.64 34.44 4.26
107 108 1.021390 GGTCTTCATCCACGTGGCAG 61.021 60.000 30.25 22.78 34.44 4.85
108 109 1.003839 GGTCTTCATCCACGTGGCA 60.004 57.895 30.25 18.56 34.44 4.92
109 110 2.100631 CGGTCTTCATCCACGTGGC 61.101 63.158 30.25 13.51 34.44 5.01
110 111 1.447838 CCGGTCTTCATCCACGTGG 60.448 63.158 29.26 29.26 0.00 4.94
111 112 0.736325 GACCGGTCTTCATCCACGTG 60.736 60.000 27.64 9.08 0.00 4.49
112 113 1.183030 TGACCGGTCTTCATCCACGT 61.183 55.000 33.39 0.00 0.00 4.49
113 114 0.037697 TTGACCGGTCTTCATCCACG 60.038 55.000 33.39 0.00 0.00 4.94
114 115 2.178912 TTTGACCGGTCTTCATCCAC 57.821 50.000 33.39 6.67 0.00 4.02
115 116 2.500229 GTTTTGACCGGTCTTCATCCA 58.500 47.619 33.39 11.07 0.00 3.41
116 117 1.810755 GGTTTTGACCGGTCTTCATCC 59.189 52.381 33.39 23.33 0.00 3.51
117 118 2.225727 GTGGTTTTGACCGGTCTTCATC 59.774 50.000 33.39 20.15 0.00 2.92
118 119 2.227194 GTGGTTTTGACCGGTCTTCAT 58.773 47.619 33.39 0.00 0.00 2.57
119 120 1.065345 TGTGGTTTTGACCGGTCTTCA 60.065 47.619 33.39 20.31 0.00 3.02
120 121 1.332686 GTGTGGTTTTGACCGGTCTTC 59.667 52.381 33.39 19.82 0.00 2.87
121 122 1.064979 AGTGTGGTTTTGACCGGTCTT 60.065 47.619 33.39 0.00 0.00 3.01
122 123 0.544697 AGTGTGGTTTTGACCGGTCT 59.455 50.000 33.39 8.02 0.00 3.85
123 124 0.661020 CAGTGTGGTTTTGACCGGTC 59.339 55.000 28.17 28.17 0.00 4.79
124 125 0.253610 TCAGTGTGGTTTTGACCGGT 59.746 50.000 6.92 6.92 0.00 5.28
125 126 0.944386 CTCAGTGTGGTTTTGACCGG 59.056 55.000 0.00 0.00 0.00 5.28
126 127 1.597663 GACTCAGTGTGGTTTTGACCG 59.402 52.381 0.00 0.00 0.00 4.79
127 128 2.614057 CTGACTCAGTGTGGTTTTGACC 59.386 50.000 0.00 0.00 0.00 4.02
128 129 3.270877 ACTGACTCAGTGTGGTTTTGAC 58.729 45.455 11.07 0.00 43.63 3.18
129 130 3.627395 ACTGACTCAGTGTGGTTTTGA 57.373 42.857 11.07 0.00 43.63 2.69
130 131 3.248602 GCTACTGACTCAGTGTGGTTTTG 59.751 47.826 20.19 3.47 45.01 2.44
131 132 3.467803 GCTACTGACTCAGTGTGGTTTT 58.532 45.455 20.19 0.00 45.01 2.43
132 133 2.545952 CGCTACTGACTCAGTGTGGTTT 60.546 50.000 20.19 0.00 45.01 3.27
133 134 1.000163 CGCTACTGACTCAGTGTGGTT 60.000 52.381 20.19 0.00 45.01 3.67
134 135 0.598562 CGCTACTGACTCAGTGTGGT 59.401 55.000 20.19 0.00 45.01 4.16
135 136 0.881796 TCGCTACTGACTCAGTGTGG 59.118 55.000 20.19 11.60 45.01 4.17
136 137 2.929531 ATCGCTACTGACTCAGTGTG 57.070 50.000 20.19 15.62 45.01 3.82
137 138 2.683867 GGTATCGCTACTGACTCAGTGT 59.316 50.000 20.19 0.00 45.01 3.55
138 139 2.286477 CGGTATCGCTACTGACTCAGTG 60.286 54.545 20.19 11.72 45.01 3.66
139 140 3.321933 CCGGTATCGCTACTGACTCAGT 61.322 54.545 16.00 16.00 40.53 3.41
140 141 1.264557 CCGGTATCGCTACTGACTCAG 59.735 57.143 6.82 4.36 36.48 3.35
141 142 1.306148 CCGGTATCGCTACTGACTCA 58.694 55.000 6.82 0.00 36.48 3.41
142 143 0.592148 CCCGGTATCGCTACTGACTC 59.408 60.000 6.82 0.00 36.48 3.36
143 144 0.106819 ACCCGGTATCGCTACTGACT 60.107 55.000 6.82 0.00 36.48 3.41
144 145 0.310232 GACCCGGTATCGCTACTGAC 59.690 60.000 6.82 0.00 36.48 3.51
145 146 0.107066 TGACCCGGTATCGCTACTGA 60.107 55.000 6.82 0.00 36.48 3.41
146 147 0.742505 TTGACCCGGTATCGCTACTG 59.257 55.000 0.00 0.00 34.51 2.74
147 148 0.743097 GTTGACCCGGTATCGCTACT 59.257 55.000 0.00 0.00 34.56 2.57
148 149 0.249197 GGTTGACCCGGTATCGCTAC 60.249 60.000 0.00 0.00 34.56 3.58
149 150 2.118132 GGTTGACCCGGTATCGCTA 58.882 57.895 0.00 0.00 34.56 4.26
150 151 2.897972 GGTTGACCCGGTATCGCT 59.102 61.111 0.00 0.00 34.56 4.93
159 160 1.003718 CCCTTGTCTCGGTTGACCC 60.004 63.158 0.00 0.00 36.21 4.46
160 161 0.320508 GTCCCTTGTCTCGGTTGACC 60.321 60.000 0.00 0.00 36.21 4.02
161 162 0.680061 AGTCCCTTGTCTCGGTTGAC 59.320 55.000 0.00 0.00 37.47 3.18
162 163 2.297698 TAGTCCCTTGTCTCGGTTGA 57.702 50.000 0.00 0.00 0.00 3.18
163 164 3.064931 GTTTAGTCCCTTGTCTCGGTTG 58.935 50.000 0.00 0.00 0.00 3.77
164 165 2.970640 AGTTTAGTCCCTTGTCTCGGTT 59.029 45.455 0.00 0.00 0.00 4.44
165 166 2.606378 AGTTTAGTCCCTTGTCTCGGT 58.394 47.619 0.00 0.00 0.00 4.69
166 167 3.244112 ACAAGTTTAGTCCCTTGTCTCGG 60.244 47.826 0.00 0.00 46.15 4.63
167 168 3.991367 ACAAGTTTAGTCCCTTGTCTCG 58.009 45.455 0.00 0.00 46.15 4.04
177 178 4.812626 TCTTGAAACCGGACAAGTTTAGTC 59.187 41.667 26.08 3.85 42.50 2.59
178 179 4.773013 TCTTGAAACCGGACAAGTTTAGT 58.227 39.130 26.08 0.00 42.50 2.24
179 180 4.814771 ACTCTTGAAACCGGACAAGTTTAG 59.185 41.667 26.08 21.35 42.50 1.85
180 181 4.773013 ACTCTTGAAACCGGACAAGTTTA 58.227 39.130 26.08 14.89 42.50 2.01
181 182 3.617284 ACTCTTGAAACCGGACAAGTTT 58.383 40.909 26.08 12.06 42.50 2.66
182 183 3.277142 ACTCTTGAAACCGGACAAGTT 57.723 42.857 26.08 17.74 42.50 2.66
183 184 3.277142 AACTCTTGAAACCGGACAAGT 57.723 42.857 26.08 15.04 42.50 3.16
184 185 3.746492 CCTAACTCTTGAAACCGGACAAG 59.254 47.826 23.60 23.60 43.03 3.16
185 186 3.495453 CCCTAACTCTTGAAACCGGACAA 60.495 47.826 9.46 10.76 0.00 3.18
186 187 2.038033 CCCTAACTCTTGAAACCGGACA 59.962 50.000 9.46 2.00 0.00 4.02
187 188 2.301009 TCCCTAACTCTTGAAACCGGAC 59.699 50.000 9.46 0.00 0.00 4.79
188 189 2.612000 TCCCTAACTCTTGAAACCGGA 58.388 47.619 9.46 0.00 0.00 5.14
189 190 3.270877 CATCCCTAACTCTTGAAACCGG 58.729 50.000 0.00 0.00 0.00 5.28
190 191 2.678336 GCATCCCTAACTCTTGAAACCG 59.322 50.000 0.00 0.00 0.00 4.44
191 192 3.686016 TGCATCCCTAACTCTTGAAACC 58.314 45.455 0.00 0.00 0.00 3.27
192 193 4.762251 ACTTGCATCCCTAACTCTTGAAAC 59.238 41.667 0.00 0.00 0.00 2.78
193 194 4.985538 ACTTGCATCCCTAACTCTTGAAA 58.014 39.130 0.00 0.00 0.00 2.69
194 195 4.640771 ACTTGCATCCCTAACTCTTGAA 57.359 40.909 0.00 0.00 0.00 2.69
195 196 4.202461 ACAACTTGCATCCCTAACTCTTGA 60.202 41.667 0.00 0.00 0.00 3.02
196 197 4.074970 ACAACTTGCATCCCTAACTCTTG 58.925 43.478 0.00 0.00 0.00 3.02
197 198 4.042187 AGACAACTTGCATCCCTAACTCTT 59.958 41.667 0.00 0.00 0.00 2.85
198 199 3.584848 AGACAACTTGCATCCCTAACTCT 59.415 43.478 0.00 0.00 0.00 3.24
199 200 3.686726 CAGACAACTTGCATCCCTAACTC 59.313 47.826 0.00 0.00 0.00 3.01
200 201 3.560025 CCAGACAACTTGCATCCCTAACT 60.560 47.826 0.00 0.00 0.00 2.24
201 202 2.749621 CCAGACAACTTGCATCCCTAAC 59.250 50.000 0.00 0.00 0.00 2.34
202 203 2.375174 ACCAGACAACTTGCATCCCTAA 59.625 45.455 0.00 0.00 0.00 2.69
203 204 1.985159 ACCAGACAACTTGCATCCCTA 59.015 47.619 0.00 0.00 0.00 3.53
204 205 0.773644 ACCAGACAACTTGCATCCCT 59.226 50.000 0.00 0.00 0.00 4.20
205 206 1.620822 AACCAGACAACTTGCATCCC 58.379 50.000 0.00 0.00 0.00 3.85
206 207 3.068024 TCAAAACCAGACAACTTGCATCC 59.932 43.478 0.00 0.00 0.00 3.51
207 208 4.305989 TCAAAACCAGACAACTTGCATC 57.694 40.909 0.00 0.00 0.00 3.91
208 209 4.160252 AGTTCAAAACCAGACAACTTGCAT 59.840 37.500 0.00 0.00 0.00 3.96
209 210 3.509575 AGTTCAAAACCAGACAACTTGCA 59.490 39.130 0.00 0.00 0.00 4.08
210 211 4.110036 AGTTCAAAACCAGACAACTTGC 57.890 40.909 0.00 0.00 0.00 4.01
212 213 5.105756 CCTCAAGTTCAAAACCAGACAACTT 60.106 40.000 0.00 0.00 37.70 2.66
213 214 4.399303 CCTCAAGTTCAAAACCAGACAACT 59.601 41.667 0.00 0.00 0.00 3.16
214 215 4.440112 CCCTCAAGTTCAAAACCAGACAAC 60.440 45.833 0.00 0.00 0.00 3.32
215 216 3.699038 CCCTCAAGTTCAAAACCAGACAA 59.301 43.478 0.00 0.00 0.00 3.18
216 217 3.053991 TCCCTCAAGTTCAAAACCAGACA 60.054 43.478 0.00 0.00 0.00 3.41
217 218 3.315470 GTCCCTCAAGTTCAAAACCAGAC 59.685 47.826 0.00 0.00 0.00 3.51
218 219 3.202151 AGTCCCTCAAGTTCAAAACCAGA 59.798 43.478 0.00 0.00 0.00 3.86
219 220 3.555966 AGTCCCTCAAGTTCAAAACCAG 58.444 45.455 0.00 0.00 0.00 4.00
220 221 3.662759 AGTCCCTCAAGTTCAAAACCA 57.337 42.857 0.00 0.00 0.00 3.67
221 222 5.131067 ACTTAGTCCCTCAAGTTCAAAACC 58.869 41.667 0.00 0.00 30.89 3.27
222 223 6.056236 AGACTTAGTCCCTCAAGTTCAAAAC 58.944 40.000 8.96 0.00 35.17 2.43
223 224 6.248569 AGACTTAGTCCCTCAAGTTCAAAA 57.751 37.500 8.96 0.00 35.17 2.44
224 225 5.888982 AGACTTAGTCCCTCAAGTTCAAA 57.111 39.130 8.96 0.00 35.17 2.69
225 226 6.208994 GTCTAGACTTAGTCCCTCAAGTTCAA 59.791 42.308 15.91 0.00 35.17 2.69
226 227 5.711036 GTCTAGACTTAGTCCCTCAAGTTCA 59.289 44.000 15.91 0.00 35.17 3.18
227 228 5.947566 AGTCTAGACTTAGTCCCTCAAGTTC 59.052 44.000 20.00 0.00 38.83 3.01
228 229 5.894653 AGTCTAGACTTAGTCCCTCAAGTT 58.105 41.667 20.00 0.00 38.83 2.66
229 230 5.523883 AGTCTAGACTTAGTCCCTCAAGT 57.476 43.478 20.00 0.00 38.83 3.16
242 243 6.015940 CCTCAATTTTTGGCAAAGTCTAGACT 60.016 38.462 20.00 20.00 44.94 3.24
243 244 6.152379 CCTCAATTTTTGGCAAAGTCTAGAC 58.848 40.000 15.41 15.41 0.00 2.59
244 245 5.243730 CCCTCAATTTTTGGCAAAGTCTAGA 59.756 40.000 13.04 8.09 0.00 2.43
245 246 5.243730 TCCCTCAATTTTTGGCAAAGTCTAG 59.756 40.000 13.04 8.25 0.00 2.43
246 247 5.010617 GTCCCTCAATTTTTGGCAAAGTCTA 59.989 40.000 13.04 0.00 0.00 2.59
247 248 3.966665 TCCCTCAATTTTTGGCAAAGTCT 59.033 39.130 13.04 0.00 0.00 3.24
248 249 4.058124 GTCCCTCAATTTTTGGCAAAGTC 58.942 43.478 13.04 0.00 0.00 3.01
249 250 3.492482 CGTCCCTCAATTTTTGGCAAAGT 60.492 43.478 13.04 3.52 0.00 2.66
250 251 3.059166 CGTCCCTCAATTTTTGGCAAAG 58.941 45.455 13.04 1.64 0.00 2.77
251 252 2.695666 TCGTCCCTCAATTTTTGGCAAA 59.304 40.909 8.93 8.93 0.00 3.68
252 253 2.311463 TCGTCCCTCAATTTTTGGCAA 58.689 42.857 0.00 0.00 0.00 4.52
253 254 1.988293 TCGTCCCTCAATTTTTGGCA 58.012 45.000 0.00 0.00 0.00 4.92
254 255 3.378911 TTTCGTCCCTCAATTTTTGGC 57.621 42.857 0.00 0.00 0.00 4.52
255 256 4.944048 ACTTTTCGTCCCTCAATTTTTGG 58.056 39.130 0.00 0.00 0.00 3.28
256 257 8.512138 AGTATACTTTTCGTCCCTCAATTTTTG 58.488 33.333 0.00 0.00 0.00 2.44
257 258 8.631480 AGTATACTTTTCGTCCCTCAATTTTT 57.369 30.769 0.00 0.00 0.00 1.94
258 259 8.631480 AAGTATACTTTTCGTCCCTCAATTTT 57.369 30.769 12.50 0.00 30.82 1.82
259 260 8.631480 AAAGTATACTTTTCGTCCCTCAATTT 57.369 30.769 22.49 0.00 43.07 1.82
514 537 4.139859 TCCTGAGTTTGGAAACGTGTTA 57.860 40.909 0.00 0.00 43.51 2.41
515 538 2.993937 TCCTGAGTTTGGAAACGTGTT 58.006 42.857 0.00 0.00 43.51 3.32
516 539 2.681344 GTTCCTGAGTTTGGAAACGTGT 59.319 45.455 0.00 0.00 44.14 4.49
517 540 2.680841 TGTTCCTGAGTTTGGAAACGTG 59.319 45.455 0.00 0.00 44.14 4.49
518 541 2.681344 GTGTTCCTGAGTTTGGAAACGT 59.319 45.455 0.00 0.00 44.14 3.99
519 542 2.943033 AGTGTTCCTGAGTTTGGAAACG 59.057 45.455 0.00 0.00 44.14 3.60
520 543 4.983671 AAGTGTTCCTGAGTTTGGAAAC 57.016 40.909 0.00 0.00 44.14 2.78
521 544 5.478679 TGAAAAGTGTTCCTGAGTTTGGAAA 59.521 36.000 0.00 0.00 44.14 3.13
522 545 5.013547 TGAAAAGTGTTCCTGAGTTTGGAA 58.986 37.500 0.00 0.00 40.85 3.53
523 546 4.594970 TGAAAAGTGTTCCTGAGTTTGGA 58.405 39.130 0.00 0.00 0.00 3.53
524 547 4.981806 TGAAAAGTGTTCCTGAGTTTGG 57.018 40.909 0.00 0.00 0.00 3.28
722 748 2.144833 CTTGCGCCAACCAAGCATCA 62.145 55.000 4.18 0.00 40.83 3.07
807 4287 9.936759 ACCTATAGTAGTAGTACGTCTTATTCC 57.063 37.037 0.00 0.00 33.97 3.01
814 4294 8.361139 TGAACCTACCTATAGTAGTAGTACGTC 58.639 40.741 12.47 6.88 46.15 4.34
829 4309 2.504175 GGCTGGTCAATGAACCTACCTA 59.496 50.000 0.00 0.00 40.20 3.08
830 4310 1.282157 GGCTGGTCAATGAACCTACCT 59.718 52.381 0.00 0.00 40.20 3.08
878 4366 4.948608 TGTAGACTAGTCGAAGAGCAAG 57.051 45.455 17.07 0.00 36.95 4.01
910 4400 2.632996 TGGGTAGAAGGAGAAGTGTGTG 59.367 50.000 0.00 0.00 0.00 3.82
1119 4621 2.727123 TGTTGTTCTTGAGGCCTTGA 57.273 45.000 6.77 2.95 0.00 3.02
1158 4660 0.672401 GCACCGGCAGCTTACTGTTA 60.672 55.000 11.91 0.00 46.30 2.41
1206 4708 3.195610 ACTGTATCATGCTCAAGGACGAA 59.804 43.478 0.00 0.00 0.00 3.85
1207 4709 2.760650 ACTGTATCATGCTCAAGGACGA 59.239 45.455 0.00 0.00 0.00 4.20
1212 4714 5.400782 GTCGATGTACTGTATCATGCTCAAG 59.599 44.000 7.35 0.00 0.00 3.02
1253 4755 4.760220 GGAGGAGGGAGGGGCCAA 62.760 72.222 4.39 0.00 38.95 4.52
1293 4795 2.190578 GCCCAGTAGCGAGCCATT 59.809 61.111 0.00 0.00 0.00 3.16
1302 4804 5.525378 GTCATTGATAAAGTCAGCCCAGTAG 59.475 44.000 0.00 0.00 38.29 2.57
1321 4823 2.303163 TAGCGCAATACCGTGTCATT 57.697 45.000 11.47 0.00 0.00 2.57
1372 4878 3.072915 ACTCCTGTGTGGTTGATGATGAA 59.927 43.478 0.00 0.00 37.07 2.57
1385 4891 6.038271 GTGTAGAATGTTTTGAACTCCTGTGT 59.962 38.462 0.00 0.00 0.00 3.72
1423 4929 8.357402 ACAAAGCCGACAAATCTAATTAAAGTT 58.643 29.630 0.00 0.00 0.00 2.66
1434 4940 3.764885 AGCATACAAAGCCGACAAATC 57.235 42.857 0.00 0.00 0.00 2.17
1438 4944 2.499197 TCAAAGCATACAAAGCCGACA 58.501 42.857 0.00 0.00 0.00 4.35
1469 4976 7.654923 CGCCGTGGTAGTATATATAGAGATACA 59.345 40.741 5.05 0.00 33.03 2.29
1473 4980 5.129320 TCCGCCGTGGTAGTATATATAGAGA 59.871 44.000 0.00 0.00 39.52 3.10
1474 4981 5.363101 TCCGCCGTGGTAGTATATATAGAG 58.637 45.833 0.00 0.00 39.52 2.43
1475 4982 5.357742 TCCGCCGTGGTAGTATATATAGA 57.642 43.478 0.00 0.00 39.52 1.98
1476 4983 6.485984 AGAATCCGCCGTGGTAGTATATATAG 59.514 42.308 0.00 0.00 39.52 1.31
1477 4984 6.359804 AGAATCCGCCGTGGTAGTATATATA 58.640 40.000 0.00 0.00 39.52 0.86
1478 4985 5.198965 AGAATCCGCCGTGGTAGTATATAT 58.801 41.667 0.00 0.00 39.52 0.86
1504 5011 7.316544 CCGCTGTGGTAGTATATTTCTTTTT 57.683 36.000 0.00 0.00 0.00 1.94
1505 5012 6.920569 CCGCTGTGGTAGTATATTTCTTTT 57.079 37.500 0.00 0.00 0.00 2.27
1522 5029 7.701078 CGATATAAGCTATAATAACACCGCTGT 59.299 37.037 0.00 0.00 0.00 4.40
1523 5030 7.701078 ACGATATAAGCTATAATAACACCGCTG 59.299 37.037 0.00 0.00 0.00 5.18
1524 5031 7.701078 CACGATATAAGCTATAATAACACCGCT 59.299 37.037 0.00 0.00 0.00 5.52
1543 5050 3.384668 GAGCTGCACATACACACGATAT 58.615 45.455 1.02 0.00 0.00 1.63
1546 5053 0.732538 CGAGCTGCACATACACACGA 60.733 55.000 1.02 0.00 0.00 4.35
1548 5055 0.439985 CACGAGCTGCACATACACAC 59.560 55.000 1.02 0.00 0.00 3.82
1585 5092 1.675641 GTCTGTTTCGCCCCATGCT 60.676 57.895 0.00 0.00 38.05 3.79
1595 5102 0.596577 GCCTTTTCCCCGTCTGTTTC 59.403 55.000 0.00 0.00 0.00 2.78
1609 5116 1.062505 TGGTTCTTCCCCTTTGCCTTT 60.063 47.619 0.00 0.00 34.77 3.11
1615 5122 0.482887 CCACCTGGTTCTTCCCCTTT 59.517 55.000 0.00 0.00 34.77 3.11
1616 5123 2.081585 GCCACCTGGTTCTTCCCCTT 62.082 60.000 0.00 0.00 37.57 3.95
1660 5167 1.311651 TGGAGCACTCTCTCAGAGCG 61.312 60.000 0.00 0.00 46.12 5.03
1701 5208 2.039216 ACAACATCCACATACCCGACAA 59.961 45.455 0.00 0.00 0.00 3.18
1708 5215 1.665679 CCGAGCACAACATCCACATAC 59.334 52.381 0.00 0.00 0.00 2.39
1720 5227 2.818169 AAGAAGGCCACCGAGCACA 61.818 57.895 5.01 0.00 0.00 4.57
1741 5248 4.634703 TTGGTCGTGCGCACCCAT 62.635 61.111 30.78 0.00 32.24 4.00
1751 5258 0.317770 CTTTGCATTGCGTTGGTCGT 60.318 50.000 3.84 0.00 42.13 4.34
1757 5264 4.041723 GTCTTAACACTTTGCATTGCGTT 58.958 39.130 3.84 4.32 0.00 4.84
1762 5269 6.273071 GTTGAAGGTCTTAACACTTTGCATT 58.727 36.000 0.00 0.00 0.00 3.56
1769 5276 3.493873 GGGTCGTTGAAGGTCTTAACACT 60.494 47.826 0.00 0.00 0.00 3.55
1774 5281 1.001633 GCAGGGTCGTTGAAGGTCTTA 59.998 52.381 0.00 0.00 0.00 2.10
1784 5291 1.302511 GTGTGATGGCAGGGTCGTT 60.303 57.895 0.00 0.00 0.00 3.85
1871 5378 1.474077 GGCAAAATCGACCAGCATTCT 59.526 47.619 0.00 0.00 0.00 2.40
1875 5382 0.527113 CATGGCAAAATCGACCAGCA 59.473 50.000 0.00 0.00 36.78 4.41
1918 5425 2.290287 CCCCATCGACCAGACACCA 61.290 63.158 0.00 0.00 0.00 4.17
1919 5426 2.584608 CCCCATCGACCAGACACC 59.415 66.667 0.00 0.00 0.00 4.16
1920 5427 2.125106 GCCCCATCGACCAGACAC 60.125 66.667 0.00 0.00 0.00 3.67
1921 5428 3.399181 GGCCCCATCGACCAGACA 61.399 66.667 0.00 0.00 0.00 3.41
1922 5429 3.083997 AGGCCCCATCGACCAGAC 61.084 66.667 0.00 0.00 0.00 3.51
1963 5470 1.068333 CCACCATTTGCAGAAGAACCG 60.068 52.381 0.00 0.00 0.00 4.44
2018 5525 1.691482 CCGTCCTGGGGATCTCCTTTA 60.691 57.143 14.22 0.00 32.73 1.85
2241 5748 0.249911 CCATACGGCTTGTAGAGGGC 60.250 60.000 0.00 0.00 36.25 5.19
2257 5764 1.427368 TGTTTAAGGTGTCAGGGCCAT 59.573 47.619 6.18 0.00 0.00 4.40
2339 5846 2.730382 TGTGTCGCCATACTCCTCTTA 58.270 47.619 0.00 0.00 0.00 2.10
2410 5917 4.252878 TCTGTATTGACGATGCACACAAT 58.747 39.130 11.92 11.92 36.94 2.71
2428 5935 5.188555 TCTTTACAATGCTCCTCATCTCTGT 59.811 40.000 0.00 0.00 33.40 3.41
2518 6025 6.580788 TGCTTTCATTTTTCTGGACAATTGA 58.419 32.000 13.59 0.00 0.00 2.57
2519 6026 6.847956 TGCTTTCATTTTTCTGGACAATTG 57.152 33.333 3.24 3.24 0.00 2.32
2533 6040 4.755629 CCATCAGATCTCGATGCTTTCATT 59.244 41.667 20.74 0.00 39.17 2.57
2540 6047 2.035704 AGACACCATCAGATCTCGATGC 59.964 50.000 20.74 12.26 39.17 3.91
2553 6060 6.070653 TGACCGTTATTACCTAAAGACACCAT 60.071 38.462 0.00 0.00 0.00 3.55
2594 6101 2.981859 AGTTCAACAACTCACCGACT 57.018 45.000 0.00 0.00 38.62 4.18
2656 6163 3.966930 GACGGGGGTCTCAGAGGCT 62.967 68.421 1.07 0.00 0.00 4.58
2705 6214 9.888878 GTCTTCAAACATGTGATGAATATATGG 57.111 33.333 21.15 12.35 34.54 2.74
2720 6229 2.948979 TCTGGCAAACGTCTTCAAACAT 59.051 40.909 0.00 0.00 0.00 2.71
2724 6233 4.442375 TTTTTCTGGCAAACGTCTTCAA 57.558 36.364 0.00 0.00 0.00 2.69
2725 6234 4.097135 TGATTTTTCTGGCAAACGTCTTCA 59.903 37.500 0.00 0.00 0.00 3.02
2727 6236 4.647424 TGATTTTTCTGGCAAACGTCTT 57.353 36.364 0.00 0.00 0.00 3.01
2728 6237 4.853924 ATGATTTTTCTGGCAAACGTCT 57.146 36.364 0.00 0.00 0.00 4.18
2729 6238 5.457140 TGTATGATTTTTCTGGCAAACGTC 58.543 37.500 0.00 0.00 0.00 4.34
2730 6239 5.446143 TGTATGATTTTTCTGGCAAACGT 57.554 34.783 0.00 0.00 0.00 3.99
2731 6240 5.920273 ACTTGTATGATTTTTCTGGCAAACG 59.080 36.000 0.00 0.00 0.00 3.60
2733 6242 6.815089 ACACTTGTATGATTTTTCTGGCAAA 58.185 32.000 0.00 0.00 0.00 3.68
2734 6243 6.403866 ACACTTGTATGATTTTTCTGGCAA 57.596 33.333 0.00 0.00 0.00 4.52
2736 6245 6.681777 AGAACACTTGTATGATTTTTCTGGC 58.318 36.000 0.00 0.00 0.00 4.85
2737 6246 7.596248 CCAAGAACACTTGTATGATTTTTCTGG 59.404 37.037 0.00 0.00 39.24 3.86
2753 6278 2.957402 TCAGGAATGCCAAGAACACT 57.043 45.000 0.00 0.00 36.29 3.55
2789 6314 8.404000 GTGACGTAGAATTAGATGTAGGAAGAA 58.596 37.037 0.00 0.00 0.00 2.52
2794 6319 6.262496 TGAGGTGACGTAGAATTAGATGTAGG 59.738 42.308 0.00 0.00 0.00 3.18
2797 6322 6.321435 TGATGAGGTGACGTAGAATTAGATGT 59.679 38.462 0.00 0.00 0.00 3.06
2801 6326 7.827819 TTTTGATGAGGTGACGTAGAATTAG 57.172 36.000 0.00 0.00 0.00 1.73
2843 6368 9.404848 TGGGAGTATCATAATTAGTAGTATCGG 57.595 37.037 0.00 0.00 36.25 4.18
2855 6380 8.603304 GGTTACCTGTAATGGGAGTATCATAAT 58.397 37.037 0.00 0.00 36.25 1.28
2886 6411 1.429930 TTAGCCGGGCTATGGATCAA 58.570 50.000 28.22 11.64 41.01 2.57
2939 6464 5.178623 AGTGATGAAAGACACGCGAAAATTA 59.821 36.000 15.93 0.00 41.22 1.40
2940 6465 4.024048 AGTGATGAAAGACACGCGAAAATT 60.024 37.500 15.93 0.12 41.22 1.82
2941 6466 3.498397 AGTGATGAAAGACACGCGAAAAT 59.502 39.130 15.93 0.00 41.22 1.82
2962 6487 6.969366 TGTTTTGTCTTGGATGTTGATACAG 58.031 36.000 0.00 0.00 37.77 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.