AutoCloner

Multiple sequence alignment - TraesCS2A01G543300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G543300	chr2A	100.000	3008	0	0	1	3008	753406093	753403086	0.000000e+00	5555.0
1	TraesCS2A01G543300	chr2A	82.321	1120	150	27	925	2027	753434370	753433282	0.000000e+00	928.0
2	TraesCS2A01G543300	chr2A	93.137	408	17	1	2270	2677	753526790	753527186	3.340000e-164	588.0
3	TraesCS2A01G543300	chr2A	78.571	924	152	28	1101	2009	753464740	753463848	4.350000e-158	568.0
4	TraesCS2A01G543300	chr2D	87.095	1511	125	28	761	2226	621590310	621588825	0.000000e+00	1646.0
5	TraesCS2A01G543300	chr2D	88.968	1260	85	21	959	2194	621841356	621842585	0.000000e+00	1507.0
6	TraesCS2A01G543300	chr2D	83.167	1099	149	17	939	2022	621671491	621670414	0.000000e+00	972.0
7	TraesCS2A01G543300	chr2D	96.231	451	14	3	2227	2677	621843118	621843565	0.000000e+00	736.0
8	TraesCS2A01G543300	chr2D	93.279	491	28	2	2521	3008	621583240	621582752	0.000000e+00	719.0
9	TraesCS2A01G543300	chr2D	88.783	526	38	6	259	770	621592502	621591984	2.550000e-175	625.0
10	TraesCS2A01G543300	chr2D	94.020	301	16	2	2227	2527	621588326	621588028	3.530000e-124	455.0
11	TraesCS2A01G543300	chr2D	92.763	152	11	0	101	252	621594312	621594161	1.400000e-53	220.0
12	TraesCS2A01G543300	chr2D	93.496	123	7	1	2070	2192	621843580	621843701	6.620000e-42	182.0
13	TraesCS2A01G543300	chr2D	81.503	173	32	0	208	380	408366765	408366593	3.130000e-30	143.0
14	TraesCS2A01G543300	chr2D	83.133	166	16	6	902	1061	621672406	621672247	1.120000e-29	141.0
15	TraesCS2A01G543300	chr2B	89.334	1322	103	15	920	2226	762957886	762956588	0.000000e+00	1626.0
16	TraesCS2A01G543300	chr2B	90.670	836	54	6	1393	2220	762805683	762804864	0.000000e+00	1090.0
17	TraesCS2A01G543300	chr2B	87.583	902	72	21	468	1354	763335425	763334549	0.000000e+00	1009.0
18	TraesCS2A01G543300	chr2B	82.168	1116	157	23	925	2027	763493416	763492330	0.000000e+00	920.0
19	TraesCS2A01G543300	chr2B	92.442	516	34	2	1608	2122	763334539	763334028	0.000000e+00	732.0
20	TraesCS2A01G543300	chr2B	90.625	416	28	2	129	533	762959599	762959184	2.640000e-150	542.0
21	TraesCS2A01G543300	chr2B	86.822	516	24	12	717	1192	762812045	762811534	1.230000e-148	536.0
22	TraesCS2A01G543300	chr2B	92.432	370	28	0	1690	2059	763628416	763628785	2.050000e-146	529.0
23	TraesCS2A01G543300	chr2B	84.921	504	49	9	2447	2931	762790708	762790213	4.510000e-133	484.0
24	TraesCS2A01G543300	chr2B	79.867	601	66	20	2450	3008	762801570	762800983	3.640000e-104	388.0
25	TraesCS2A01G543300	chr2B	85.593	354	43	5	1189	1540	763628075	763628422	6.130000e-97	364.0
26	TraesCS2A01G543300	chr2B	82.938	422	34	13	2564	2968	762916472	762916072	2.220000e-91	346.0
27	TraesCS2A01G543300	chr2B	81.931	404	46	14	101	480	762814019	762813619	1.740000e-82	316.0
28	TraesCS2A01G543300	chr2B	85.039	254	24	10	468	719	762812692	762812451	2.320000e-61	246.0
29	TraesCS2A01G543300	chr2B	90.426	188	12	3	1217	1398	762806169	762805982	3.000000e-60	243.0
30	TraesCS2A01G543300	chr2B	93.878	98	5	1	2123	2220	763333568	763333472	2.420000e-31	147.0
31	TraesCS2A01G543300	chr2B	90.816	98	7	2	1	98	762959824	762959729	2.430000e-26	130.0
32	TraesCS2A01G543300	chr2B	89.320	103	11	0	101	203	763336663	763336561	2.430000e-26	130.0
33	TraesCS2A01G543300	chr2B	88.889	99	4	2	2907	3005	762790158	762790067	6.810000e-22	115.0
34	TraesCS2A01G543300	chr4D	90.119	253	16	6	1978	2226	464676039	464676286	1.350000e-83	320.0
35	TraesCS2A01G543300	chr4D	77.778	234	33	9	252	468	446747389	446747620	3.150000e-25	126.0
36	TraesCS2A01G543300	chr3D	92.667	150	8	2	2043	2192	549644087	549644233	2.350000e-51	213.0
37	TraesCS2A01G543300	chr3D	78.618	304	41	11	199	480	522297005	522296704	2.380000e-41	180.0
38	TraesCS2A01G543300	chr5D	92.000	150	9	2	2043	2192	47628033	47627887	1.090000e-49	207.0
39	TraesCS2A01G543300	chr5D	78.425	292	41	12	204	474	388050775	388050485	1.430000e-38	171.0
40	TraesCS2A01G543300	chr5D	91.837	49	4	0	1145	1193	46128424	46128376	5.380000e-08	69.4
41	TraesCS2A01G543300	chr1B	79.715	281	45	5	204	474	546506490	546506768	3.060000e-45	193.0
42	TraesCS2A01G543300	chr5B	85.549	173	23	2	203	373	491114465	491114293	2.380000e-41	180.0
43	TraesCS2A01G543300	chr5B	93.243	74	4	1	395	467	13096187	13096260	1.140000e-19	108.0
44	TraesCS2A01G543300	chr6D	84.916	179	23	4	196	371	426877724	426877901	8.570000e-41	178.0
45	TraesCS2A01G543300	chr6D	91.026	78	6	1	404	480	62620940	62620863	1.480000e-18	104.0
46	TraesCS2A01G543300	chr5A	78.840	293	39	14	204	474	362283742	362284033	3.080000e-40	176.0
47	TraesCS2A01G543300	chr5A	82.883	111	19	0	1086	1196	36942876	36942766	1.910000e-17	100.0
48	TraesCS2A01G543300	chr7B	83.908	174	26	2	205	377	709082737	709082909	6.670000e-37	165.0
49	TraesCS2A01G543300	chr1A	82.123	179	29	2	203	380	66448849	66448673	1.870000e-32	150.0
50	TraesCS2A01G543300	chr7A	79.545	176	35	1	206	380	714351423	714351248	1.130000e-24	124.0
51	TraesCS2A01G543300	chr4A	79.885	174	31	4	206	377	693165468	693165639	1.130000e-24	124.0
52	TraesCS2A01G543300	chr1D	79.444	180	33	3	203	380	489985161	489984984	1.130000e-24	124.0
53	TraesCS2A01G543300	chr1D	75.685	292	37	13	205	474	291851211	291850932	6.810000e-22	115.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G543300	chr2A	753403086	753406093	3007	True	5555.000000	5555	100.000000	1	3008	1	chr2A.!!$R1	3007
1	TraesCS2A01G543300	chr2A	753433282	753434370	1088	True	928.000000	928	82.321000	925	2027	1	chr2A.!!$R2	1102
2	TraesCS2A01G543300	chr2A	753463848	753464740	892	True	568.000000	568	78.571000	1101	2009	1	chr2A.!!$R3	908
3	TraesCS2A01G543300	chr2D	621841356	621843701	2345	False	808.333333	1507	92.898333	959	2677	3	chr2D.!!$F1	1718
4	TraesCS2A01G543300	chr2D	621588028	621594312	6284	True	736.500000	1646	90.665250	101	2527	4	chr2D.!!$R3	2426
5	TraesCS2A01G543300	chr2D	621670414	621672406	1992	True	556.500000	972	83.150000	902	2022	2	chr2D.!!$R4	1120
6	TraesCS2A01G543300	chr2B	763492330	763493416	1086	True	920.000000	920	82.168000	925	2027	1	chr2B.!!$R2	1102
7	TraesCS2A01G543300	chr2B	762956588	762959824	3236	True	766.000000	1626	90.258333	1	2226	3	chr2B.!!$R6	2225
8	TraesCS2A01G543300	chr2B	762800983	762806169	5186	True	573.666667	1090	86.987667	1217	3008	3	chr2B.!!$R4	1791
9	TraesCS2A01G543300	chr2B	763333472	763336663	3191	True	504.500000	1009	90.805750	101	2220	4	chr2B.!!$R7	2119
10	TraesCS2A01G543300	chr2B	763628075	763628785	710	False	446.500000	529	89.012500	1189	2059	2	chr2B.!!$F1	870
11	TraesCS2A01G543300	chr2B	762811534	762814019	2485	True	366.000000	536	84.597333	101	1192	3	chr2B.!!$R5	1091
12	TraesCS2A01G543300	chr2B	762790067	762790708	641	True	299.500000	484	86.905000	2447	3005	2	chr2B.!!$R3	558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
74	75	0.374758	CAATGACAATGGCTCGGACG	59.625	55.0	0.0	0.0	0.00	4.79	F
1363	8134	0.318699	CGACTCCTGCAAGAACGACA	60.319	55.0	5.9	0.0	34.07	4.35	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1494	8575	0.106719	AAGTCTTGGTGGTGGTGGTG	60.107	55.0	0.0	0.0	0.00	4.17	R
2318	13005	2.200373	ACCTTAGCAGGCGAAAACAT	57.800	45.0	0.0	0.0	45.56	2.71	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	63	3.604582	TGGCATGATTACGACAATGACA	58.395	40.909	0.00	0.00	0.00	3.58
64	65	4.639755	TGGCATGATTACGACAATGACAAT	59.360	37.500	0.00	0.00	0.00	2.71
74	75	0.374758	CAATGACAATGGCTCGGACG	59.625	55.000	0.00	0.00	0.00	4.79
76	77	3.195698	GACAATGGCTCGGACGGC	61.196	66.667	0.00	0.00	0.00	5.68
110	220	5.163663	TGGCAGAGCGGATATTTTGTTTTAG	60.164	40.000	0.00	0.00	0.00	1.85
225	335	2.125269	GCATCTACAACCGGGCGT	60.125	61.111	6.32	4.56	0.00	5.68
243	353	0.898326	GTCCCAAACCCGCCTCAAAT	60.898	55.000	0.00	0.00	0.00	2.32
255	2017	1.755179	CCTCAAATGCTTGGACGGAT	58.245	50.000	0.00	0.00	33.01	4.18
257	2019	2.358957	CTCAAATGCTTGGACGGATGA	58.641	47.619	0.00	0.00	33.01	2.92
294	2056	1.335872	CCACAAAAATGCGACCCAGAC	60.336	52.381	0.00	0.00	0.00	3.51
356	2119	2.982488	ACCCCTCATATCTAGCCCAAAG	59.018	50.000	0.00	0.00	0.00	2.77
373	2136	2.044946	GATGGGGCGGATATGGGC	60.045	66.667	0.00	0.00	0.00	5.36
402	2185	2.833957	GTTGGTCCCGGTCCACTT	59.166	61.111	14.04	0.00	34.45	3.16
523	3253	0.599204	AACGAGTAAGGTGTGGTGCG	60.599	55.000	0.00	0.00	0.00	5.34
524	3254	1.287815	CGAGTAAGGTGTGGTGCGA	59.712	57.895	0.00	0.00	0.00	5.10
525	3255	0.732880	CGAGTAAGGTGTGGTGCGAG	60.733	60.000	0.00	0.00	0.00	5.03
526	3256	0.601558	GAGTAAGGTGTGGTGCGAGA	59.398	55.000	0.00	0.00	0.00	4.04
527	3257	0.603569	AGTAAGGTGTGGTGCGAGAG	59.396	55.000	0.00	0.00	0.00	3.20
786	6598	2.104967	TGTCTAAACGGATCGGATGGT	58.895	47.619	7.35	0.00	0.00	3.55
810	6645	0.678048	AACGGCTGAGCTGGGATTTC	60.678	55.000	18.73	0.00	39.57	2.17
834	6669	0.397254	GGCTGCCCCTCTCTAGTACA	60.397	60.000	7.66	0.00	0.00	2.90
835	6670	1.036707	GCTGCCCCTCTCTAGTACAG	58.963	60.000	0.00	0.00	0.00	2.74
836	6671	1.686741	GCTGCCCCTCTCTAGTACAGT	60.687	57.143	0.00	0.00	0.00	3.55
837	6672	2.423088	GCTGCCCCTCTCTAGTACAGTA	60.423	54.545	0.00	0.00	0.00	2.74
838	6673	3.482436	CTGCCCCTCTCTAGTACAGTAG	58.518	54.545	0.00	0.00	0.00	2.57
1214	7968	6.536941	GGATTCAGTTCTGAATACAAGGACTC	59.463	42.308	24.50	12.79	38.63	3.36
1286	8040	0.965866	TACGACCTGAGGCTGACCAG	60.966	60.000	0.00	0.00	39.06	4.00
1363	8134	0.318699	CGACTCCTGCAAGAACGACA	60.319	55.000	5.90	0.00	34.07	4.35
1374	8145	3.146066	CAAGAACGACAATTTCAGGGGA	58.854	45.455	0.00	0.00	0.00	4.81
1398	8473	4.759782	CTTACACGTTCATGAAGAGGGAT	58.240	43.478	17.17	6.72	0.00	3.85
1512	8596	1.531748	CACCACCACCACCAAGACT	59.468	57.895	0.00	0.00	0.00	3.24
1513	8597	0.106719	CACCACCACCACCAAGACTT	60.107	55.000	0.00	0.00	0.00	3.01
1665	8752	1.227002	GTCTCCGGTCTTCGATGCC	60.227	63.158	0.00	0.00	42.43	4.40
2153	9728	6.846505	AGTCTTCACATATATTTGGGAGGAGA	59.153	38.462	9.92	3.68	36.00	3.71
2211	9806	5.014858	CCTATATGAATCCATGCCAGCTTT	58.985	41.667	0.00	0.00	34.31	3.51
2220	9815	0.813184	ATGCCAGCTTTCCGTGAATG	59.187	50.000	0.00	0.00	0.00	2.67
2229	9824	2.254546	TTCCGTGAATGTGCTGTCTT	57.745	45.000	0.00	0.00	0.00	3.01
2252	12938	8.081633	TCTTTTAGAATTACAAACATGCCTGTG	58.918	33.333	9.88	0.00	35.22	3.66
2318	13005	6.673106	TCTAAATCTAAATTGCAAACACGCA	58.327	32.000	1.71	0.00	41.03	5.24
2435	13122	5.104402	TCTCATCCTGTTGGCTGATTGATTA	60.104	40.000	0.00	0.00	37.78	1.75
2680	13396	7.972832	TTTTCGGACAGTAAATAATCAGTGT	57.027	32.000	0.00	0.00	0.00	3.55
2682	13398	8.697846	TTTCGGACAGTAAATAATCAGTGTAG	57.302	34.615	0.00	0.00	0.00	2.74
2731	13461	7.148239	CCAGGTCAATTTATAGGACTGTTGTTC	60.148	40.741	0.00	0.00	0.00	3.18
2867	13597	0.670239	GGACCTTTGGCGCCAAATTG	60.670	55.000	44.99	38.32	43.78	2.32
2876	13606	1.273886	GGCGCCAAATTGACCCTTTTA	59.726	47.619	24.80	0.00	0.00	1.52
2879	13609	3.305744	GCGCCAAATTGACCCTTTTAGAA	60.306	43.478	0.00	0.00	0.00	2.10
2900	13649	7.083062	AGAATCATGACTATTCAAGGGCATA	57.917	36.000	0.00	0.00	36.09	3.14
2901	13650	7.696981	AGAATCATGACTATTCAAGGGCATAT	58.303	34.615	0.00	0.00	36.09	1.78
2967	13795	6.940867	GGGACAAAGAACAGATAAAGTAACCT	59.059	38.462	0.00	0.00	0.00	3.50
2968	13796	7.447545	GGGACAAAGAACAGATAAAGTAACCTT	59.552	37.037	0.00	0.00	0.00	3.50
3005	13833	8.850156	CATTTACAGGCTAATACCTATTTTGCT	58.150	33.333	0.00	0.00	38.26	3.91

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
46	47	4.260985	AGCCATTGTCATTGTCGTAATCA	58.739	39.130	0.00	0.00	0.00	2.57
53	54	1.398390	GTCCGAGCCATTGTCATTGTC	59.602	52.381	0.00	0.00	0.00	3.18
54	55	1.453155	GTCCGAGCCATTGTCATTGT	58.547	50.000	0.00	0.00	0.00	2.71
86	87	2.418368	ACAAAATATCCGCTCTGCCA	57.582	45.000	0.00	0.00	0.00	4.92
225	335	0.897863	CATTTGAGGCGGGTTTGGGA	60.898	55.000	0.00	0.00	0.00	4.37
243	353	2.668632	GGGTCATCCGTCCAAGCA	59.331	61.111	0.00	0.00	33.83	3.91
272	2034	1.112315	TGGGTCGCATTTTTGTGGCT	61.112	50.000	0.00	0.00	0.00	4.75
278	2040	2.253513	CCGTCTGGGTCGCATTTTT	58.746	52.632	0.00	0.00	0.00	1.94
356	2119	2.044946	GCCCATATCCGCCCCATC	60.045	66.667	0.00	0.00	0.00	3.51
387	2170	2.122769	TCAAGTGGACCGGGACCA	60.123	61.111	14.37	14.37	34.84	4.02
402	2185	3.256704	GGGAGGAATATATGTGGGGTCA	58.743	50.000	0.00	0.00	0.00	4.02
523	3253	1.495584	ATCGTCTCGCTCTCGCTCTC	61.496	60.000	0.00	0.00	35.26	3.20
524	3254	1.522806	ATCGTCTCGCTCTCGCTCT	60.523	57.895	0.00	0.00	35.26	4.09
525	3255	1.368731	CATCGTCTCGCTCTCGCTC	60.369	63.158	0.00	0.00	35.26	5.03
526	3256	2.712539	CATCGTCTCGCTCTCGCT	59.287	61.111	0.00	0.00	35.26	4.93
527	3257	2.352915	CCATCGTCTCGCTCTCGC	60.353	66.667	0.00	0.00	35.26	5.03
528	3258	2.329690	CCCATCGTCTCGCTCTCG	59.670	66.667	0.00	0.00	0.00	4.04
786	6598	1.172180	CCCAGCTCAGCCGTTTTCAA	61.172	55.000	0.00	0.00	0.00	2.69
1077	7824	4.492160	TAGCCGGCGAGCGTGAAG	62.492	66.667	23.20	0.00	38.01	3.02
1163	7914	0.249489	GTAGTAGCGGATGCACCAGG	60.249	60.000	0.00	0.00	46.23	4.45
1214	7968	1.056103	CTCGACGCAGACTGAAACAG	58.944	55.000	6.65	0.00	37.52	3.16
1251	8005	2.037367	TAGAGCGCCCTCACCACT	59.963	61.111	2.29	0.00	40.68	4.00
1363	8134	2.039879	ACGTGTAAGCTCCCCTGAAATT	59.960	45.455	0.00	0.00	0.00	1.82
1374	8145	3.589988	CCTCTTCATGAACGTGTAAGCT	58.410	45.455	3.38	0.00	0.00	3.74
1398	8473	2.040464	GGGGATGCCTCCAGGAGA	60.040	66.667	19.21	0.00	44.08	3.71
1489	8570	4.974721	GGTGGTGGTGGTGGCCAG	62.975	72.222	5.11	0.00	39.53	4.85
1491	8572	4.531426	TTGGTGGTGGTGGTGGCC	62.531	66.667	0.00	0.00	0.00	5.36
1492	8573	2.912025	CTTGGTGGTGGTGGTGGC	60.912	66.667	0.00	0.00	0.00	5.01
1493	8574	1.528309	GTCTTGGTGGTGGTGGTGG	60.528	63.158	0.00	0.00	0.00	4.61
1494	8575	0.106719	AAGTCTTGGTGGTGGTGGTG	60.107	55.000	0.00	0.00	0.00	4.17
1512	8596	1.490490	GGTGGCACCTGGATATCAGAA	59.510	52.381	29.22	0.00	46.18	3.02
1513	8597	1.131638	GGTGGCACCTGGATATCAGA	58.868	55.000	29.22	0.00	46.18	3.27
1616	8703	1.069090	ACGATCTTGTGTGCGTGGT	59.931	52.632	0.00	0.00	35.44	4.16
1665	8752	0.604780	CCATTGGCCCATAGAGCTCG	60.605	60.000	8.37	0.00	0.00	5.03
2028	9136	5.781210	CAATACATGCTCTCTAGTCAGGA	57.219	43.478	0.00	0.00	0.00	3.86
2211	9806	2.254546	AAAGACAGCACATTCACGGA	57.745	45.000	0.00	0.00	0.00	4.69
2220	9815	8.905702	CATGTTTGTAATTCTAAAAGACAGCAC	58.094	33.333	0.00	0.00	0.00	4.40
2229	9824	7.283625	ACACAGGCATGTTTGTAATTCTAAA	57.716	32.000	0.00	0.00	37.65	1.85
2252	12938	7.681939	TGGTATTTCAAATCAGAGGTACAAC	57.318	36.000	0.00	0.00	0.00	3.32
2318	13005	2.200373	ACCTTAGCAGGCGAAAACAT	57.800	45.000	0.00	0.00	45.56	2.71
2435	13122	2.746277	GGATGCCGAAACACCGCT	60.746	61.111	0.00	0.00	0.00	5.52
2679	13395	8.649973	AAATATAGCACTAGCAGTTTCACTAC	57.350	34.615	0.00	0.00	45.49	2.73
2680	13396	7.926555	GGAAATATAGCACTAGCAGTTTCACTA	59.073	37.037	0.00	0.00	45.49	2.74
2682	13398	6.538742	TGGAAATATAGCACTAGCAGTTTCAC	59.461	38.462	0.00	0.00	45.49	3.18
2699	13415	9.799106	CAGTCCTATAAATTGACCTGGAAATAT	57.201	33.333	0.00	0.00	0.00	1.28
2770	13500	6.772360	TGAGAAAATAATGCCATGCTGTTA	57.228	33.333	0.00	0.00	0.00	2.41
2775	13505	7.724305	AATTGATGAGAAAATAATGCCATGC	57.276	32.000	0.00	0.00	0.00	4.06
2809	13539	8.157476	AGTGCTCAAAAACTTCCTCTATCTTTA	58.843	33.333	0.00	0.00	0.00	1.85
2820	13550	9.677567	TTATGATGTAAAGTGCTCAAAAACTTC	57.322	29.630	0.00	0.00	35.60	3.01
2867	13597	8.964476	TGAATAGTCATGATTCTAAAAGGGTC	57.036	34.615	0.00	0.00	34.88	4.46
2876	13606	5.378230	TGCCCTTGAATAGTCATGATTCT	57.622	39.130	7.56	0.00	34.88	2.40
2879	13609	6.657966	CACATATGCCCTTGAATAGTCATGAT	59.342	38.462	1.58	0.00	32.48	2.45
2900	13649	4.097741	TCTGCTTTTGTAAGTTGTGCACAT	59.902	37.500	22.39	8.69	33.74	3.21
2901	13650	3.441922	TCTGCTTTTGTAAGTTGTGCACA	59.558	39.130	17.42	17.42	33.74	4.57
2970	13798	9.262358	GGTATTAGCCTGTAAATGTTTAGAGAG	57.738	37.037	10.28	3.66	36.45	3.20

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.