Multiple sequence alignment - TraesCS2A01G543100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G543100 chr2A 100.000 3624 0 0 1 3624 753258122 753254499 0.000000e+00 6693.0
1 TraesCS2A01G543100 chr2A 77.233 918 143 45 1719 2600 753403165 753402278 9.100000e-131 477.0
2 TraesCS2A01G543100 chr2B 88.870 1168 95 15 1758 2903 762507310 762506156 0.000000e+00 1404.0
3 TraesCS2A01G543100 chr2B 90.992 655 27 8 700 1333 762508520 762507877 0.000000e+00 854.0
4 TraesCS2A01G543100 chr2B 84.000 725 43 20 2952 3624 762506002 762505299 2.380000e-176 628.0
5 TraesCS2A01G543100 chr2B 78.571 882 140 35 1718 2571 762801061 762800201 1.480000e-148 536.0
6 TraesCS2A01G543100 chr2B 84.672 548 67 13 4 548 762513506 762512973 6.890000e-147 531.0
7 TraesCS2A01G543100 chr2B 79.012 810 120 33 1807 2580 762916056 762915261 3.230000e-140 508.0
8 TraesCS2A01G543100 chr2B 83.576 481 45 9 864 1325 762538634 762538169 1.560000e-113 420.0
9 TraesCS2A01G543100 chr2B 83.193 357 49 6 1529 1879 762794103 762793752 2.100000e-82 316.0
10 TraesCS2A01G543100 chr2B 82.059 340 49 8 1669 2003 763040012 763039680 2.760000e-71 279.0
11 TraesCS2A01G543100 chr2B 75.929 619 89 35 2164 2747 762789765 762789172 2.780000e-66 263.0
12 TraesCS2A01G543100 chr2B 84.937 239 25 7 2165 2392 762793611 762793373 7.830000e-57 231.0
13 TraesCS2A01G543100 chr2B 84.184 196 22 4 1529 1720 763053768 763053578 7.990000e-42 182.0
14 TraesCS2A01G543100 chr2B 79.651 172 29 4 1483 1652 762507521 762507354 6.360000e-23 119.0
15 TraesCS2A01G543100 chr2D 86.164 1207 110 27 1759 2930 621551487 621550303 0.000000e+00 1251.0
16 TraesCS2A01G543100 chr2D 89.074 659 31 9 700 1333 621552673 621552031 0.000000e+00 780.0
17 TraesCS2A01G543100 chr2D 86.325 702 38 15 2960 3624 621550143 621549463 0.000000e+00 712.0
18 TraesCS2A01G543100 chr2D 85.273 550 71 9 1 548 621553486 621552945 3.160000e-155 558.0
19 TraesCS2A01G543100 chr2D 87.126 435 49 5 1959 2390 499308609 499309039 1.510000e-133 486.0
20 TraesCS2A01G543100 chr2D 80.109 548 94 12 1734 2279 621582816 621582282 9.430000e-106 394.0
21 TraesCS2A01G543100 chr2D 83.626 342 25 12 2575 2906 499309065 499309385 3.540000e-75 292.0
22 TraesCS2A01G543100 chr2D 79.532 171 30 4 1483 1652 621551695 621551529 2.290000e-22 117.0
23 TraesCS2A01G543100 chr4A 86.667 435 51 5 1959 2390 153777677 153777247 3.270000e-130 475.0
24 TraesCS2A01G543100 chr1A 88.732 71 8 0 546 616 544486465 544486535 1.790000e-13 87.9
25 TraesCS2A01G543100 chr5A 89.231 65 7 0 555 619 152481320 152481256 8.340000e-12 82.4
26 TraesCS2A01G543100 chr5B 90.196 51 5 0 555 605 589585260 589585210 2.340000e-07 67.6
27 TraesCS2A01G543100 chr7A 96.875 32 1 0 546 577 303963206 303963237 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G543100 chr2A 753254499 753258122 3623 True 6693.00 6693 100.00000 1 3624 1 chr2A.!!$R1 3623
1 TraesCS2A01G543100 chr2A 753402278 753403165 887 True 477.00 477 77.23300 1719 2600 1 chr2A.!!$R2 881
2 TraesCS2A01G543100 chr2B 762505299 762508520 3221 True 751.25 1404 85.87825 700 3624 4 chr2B.!!$R7 2924
3 TraesCS2A01G543100 chr2B 762800201 762801061 860 True 536.00 536 78.57100 1718 2571 1 chr2B.!!$R3 853
4 TraesCS2A01G543100 chr2B 762512973 762513506 533 True 531.00 531 84.67200 4 548 1 chr2B.!!$R1 544
5 TraesCS2A01G543100 chr2B 762915261 762916056 795 True 508.00 508 79.01200 1807 2580 1 chr2B.!!$R4 773
6 TraesCS2A01G543100 chr2B 762789172 762794103 4931 True 270.00 316 81.35300 1529 2747 3 chr2B.!!$R8 1218
7 TraesCS2A01G543100 chr2D 621549463 621553486 4023 True 683.60 1251 85.27360 1 3624 5 chr2D.!!$R2 3623
8 TraesCS2A01G543100 chr2D 621582282 621582816 534 True 394.00 394 80.10900 1734 2279 1 chr2D.!!$R1 545
9 TraesCS2A01G543100 chr2D 499308609 499309385 776 False 389.00 486 85.37600 1959 2906 2 chr2D.!!$F1 947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.097674 GCTTATCTGCACTTGTGGCG 59.902 55.0 2.81 0.0 0.00 5.69 F
459 461 0.321564 CAGCATCCGTGGTTCCAGAA 60.322 55.0 0.00 0.0 32.81 3.02 F
1663 5672 0.031716 AGCAGAGTGGAGCCTGGATA 60.032 55.0 0.00 0.0 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1424 1580 0.250727 GCAACCTAGGCTGTTGTGGA 60.251 55.0 13.65 0.00 43.86 4.02 R
1425 1581 0.250901 AGCAACCTAGGCTGTTGTGG 60.251 55.0 13.65 5.48 43.86 4.17 R
3315 7645 0.321653 AACTTCGATGGGGCTGTGAC 60.322 55.0 3.12 0.00 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.097674 GCTTATCTGCACTTGTGGCG 59.902 55.000 2.81 0.00 0.00 5.69
22 23 0.729116 CTTATCTGCACTTGTGGCGG 59.271 55.000 2.81 0.00 39.01 6.13
24 25 2.508436 TCTGCACTTGTGGCGGAA 59.492 55.556 2.81 0.00 43.30 4.30
80 81 0.396811 AAGCGGCTTTGGTAGTGTCT 59.603 50.000 9.94 0.00 0.00 3.41
105 106 8.589335 TTCTAGCGAGTTGATAATATGGTTTC 57.411 34.615 0.00 0.00 0.00 2.78
106 107 7.722363 TCTAGCGAGTTGATAATATGGTTTCA 58.278 34.615 0.00 0.00 0.00 2.69
109 110 6.992123 AGCGAGTTGATAATATGGTTTCATGA 59.008 34.615 0.00 0.00 34.96 3.07
111 112 8.292448 GCGAGTTGATAATATGGTTTCATGAAT 58.708 33.333 9.40 0.00 34.96 2.57
164 165 9.740239 AACATGAAACATATCATAGCAATCAAC 57.260 29.630 0.00 0.00 37.96 3.18
171 172 7.157347 ACATATCATAGCAATCAACATCTCGT 58.843 34.615 0.00 0.00 0.00 4.18
177 178 2.738846 GCAATCAACATCTCGTGTGAGT 59.261 45.455 0.00 0.00 41.14 3.41
178 179 3.181526 GCAATCAACATCTCGTGTGAGTC 60.182 47.826 0.00 0.00 41.14 3.36
184 185 2.092323 CATCTCGTGTGAGTCCTACCA 58.908 52.381 0.00 0.00 43.09 3.25
185 186 2.281539 TCTCGTGTGAGTCCTACCAA 57.718 50.000 0.00 0.00 43.09 3.67
190 191 1.968493 GTGTGAGTCCTACCAACAGGA 59.032 52.381 0.00 0.00 42.62 3.86
193 194 2.028020 GTGAGTCCTACCAACAGGAAGG 60.028 54.545 0.00 0.00 46.31 3.46
199 200 2.552373 CCTACCAACAGGAAGGGTGTTC 60.552 54.545 0.00 0.00 38.00 3.18
202 203 1.142870 CCAACAGGAAGGGTGTTCAGA 59.857 52.381 0.00 0.00 35.93 3.27
209 210 2.611518 GAAGGGTGTTCAGAGTCATCG 58.388 52.381 0.00 0.00 0.00 3.84
215 216 3.367395 GGTGTTCAGAGTCATCGTGATCA 60.367 47.826 0.00 0.00 0.00 2.92
232 233 1.795768 TCACGTGAGCAAGTCCATTC 58.204 50.000 15.76 0.00 0.00 2.67
244 245 7.888021 TGAGCAAGTCCATTCCTCTAAATTTAA 59.112 33.333 0.00 0.00 0.00 1.52
288 289 3.454375 TGTGACGAGACTTCCTTTTGAC 58.546 45.455 0.00 0.00 0.00 3.18
291 292 4.025647 GTGACGAGACTTCCTTTTGACAAG 60.026 45.833 0.00 0.00 0.00 3.16
305 306 6.418057 TTTTGACAAGGGCACTCAAATTAT 57.582 33.333 3.01 0.00 34.65 1.28
310 311 3.884037 AGGGCACTCAAATTATAGGGG 57.116 47.619 0.00 0.00 0.00 4.79
318 319 4.586001 ACTCAAATTATAGGGGCTTGCATG 59.414 41.667 0.00 0.00 0.00 4.06
326 327 0.899717 GGGGCTTGCATGTTTCTCCA 60.900 55.000 1.14 0.00 0.00 3.86
327 328 0.529378 GGGCTTGCATGTTTCTCCAG 59.471 55.000 1.14 0.00 0.00 3.86
336 338 4.716784 TGCATGTTTCTCCAGTAGAGGTAT 59.283 41.667 0.00 0.00 43.44 2.73
341 343 6.500336 TGTTTCTCCAGTAGAGGTATAGGTT 58.500 40.000 0.00 0.00 43.44 3.50
342 344 6.958192 TGTTTCTCCAGTAGAGGTATAGGTTT 59.042 38.462 0.00 0.00 43.44 3.27
345 347 5.104193 TCTCCAGTAGAGGTATAGGTTTCGT 60.104 44.000 0.00 0.00 43.44 3.85
346 348 5.513233 TCCAGTAGAGGTATAGGTTTCGTT 58.487 41.667 0.00 0.00 0.00 3.85
347 349 5.359009 TCCAGTAGAGGTATAGGTTTCGTTG 59.641 44.000 0.00 0.00 0.00 4.10
348 350 5.041940 CAGTAGAGGTATAGGTTTCGTTGC 58.958 45.833 0.00 0.00 0.00 4.17
359 361 4.816786 GGTTTCGTTGCTAACCTTGTAA 57.183 40.909 0.00 0.00 40.50 2.41
363 365 7.019418 GGTTTCGTTGCTAACCTTGTAATAAG 58.981 38.462 0.00 0.00 40.50 1.73
364 366 7.308169 GGTTTCGTTGCTAACCTTGTAATAAGT 60.308 37.037 0.00 0.00 40.50 2.24
365 367 8.711457 GTTTCGTTGCTAACCTTGTAATAAGTA 58.289 33.333 0.00 0.00 0.00 2.24
366 368 8.470040 TTCGTTGCTAACCTTGTAATAAGTAG 57.530 34.615 0.00 0.00 0.00 2.57
368 370 8.306038 TCGTTGCTAACCTTGTAATAAGTAGAA 58.694 33.333 0.00 0.00 0.00 2.10
369 371 9.095065 CGTTGCTAACCTTGTAATAAGTAGAAT 57.905 33.333 0.00 0.00 0.00 2.40
410 412 9.490379 AAACTTCATACTCGAGTATTTGTTTCT 57.510 29.630 30.17 20.87 39.06 2.52
411 413 8.467402 ACTTCATACTCGAGTATTTGTTTCTG 57.533 34.615 30.87 20.22 39.06 3.02
414 416 6.531594 TCATACTCGAGTATTTGTTTCTGCAG 59.468 38.462 30.87 17.05 39.06 4.41
418 420 6.260050 ACTCGAGTATTTGTTTCTGCAGAAAA 59.740 34.615 36.69 24.87 44.58 2.29
444 446 6.952773 AAACTCAAGTATTTGTTACCAGCA 57.047 33.333 0.00 0.00 35.73 4.41
459 461 0.321564 CAGCATCCGTGGTTCCAGAA 60.322 55.000 0.00 0.00 32.81 3.02
463 465 2.226330 CATCCGTGGTTCCAGAAACAA 58.774 47.619 0.00 0.00 40.07 2.83
505 507 8.282592 TGTGTTCTTTTCTCATTTATGAAGACG 58.717 33.333 0.00 0.00 36.18 4.18
506 508 8.283291 GTGTTCTTTTCTCATTTATGAAGACGT 58.717 33.333 0.00 0.00 36.18 4.34
507 509 8.282592 TGTTCTTTTCTCATTTATGAAGACGTG 58.717 33.333 0.00 0.00 36.18 4.49
508 510 7.962964 TCTTTTCTCATTTATGAAGACGTGT 57.037 32.000 0.00 0.00 36.18 4.49
524 526 2.095466 ACGTGTTTTTGTGTGACTGGTG 60.095 45.455 0.00 0.00 0.00 4.17
533 535 3.684908 TGTGTGACTGGTGGAATTATGG 58.315 45.455 0.00 0.00 0.00 2.74
544 546 2.635915 TGGAATTATGGTAGGGGCGTAG 59.364 50.000 0.00 0.00 0.00 3.51
548 550 3.600448 TTATGGTAGGGGCGTAGTACT 57.400 47.619 0.00 0.00 0.00 2.73
550 552 2.236489 TGGTAGGGGCGTAGTACTTT 57.764 50.000 0.00 0.00 0.00 2.66
552 554 2.291800 TGGTAGGGGCGTAGTACTTTCT 60.292 50.000 0.00 0.00 0.00 2.52
555 557 1.475682 AGGGGCGTAGTACTTTCTTCG 59.524 52.381 0.00 0.49 0.00 3.79
557 559 2.524034 GGGCGTAGTACTTTCTTCGTC 58.476 52.381 0.00 0.68 33.43 4.20
558 560 2.163211 GGGCGTAGTACTTTCTTCGTCT 59.837 50.000 0.00 0.00 34.34 4.18
559 561 3.169733 GGCGTAGTACTTTCTTCGTCTG 58.830 50.000 0.00 0.00 31.99 3.51
560 562 3.120060 GGCGTAGTACTTTCTTCGTCTGA 60.120 47.826 0.00 0.00 31.99 3.27
561 563 4.470462 GCGTAGTACTTTCTTCGTCTGAA 58.530 43.478 0.00 0.00 32.42 3.02
563 565 5.400485 GCGTAGTACTTTCTTCGTCTGAAAA 59.600 40.000 0.00 0.00 33.70 2.29
565 567 7.272084 GCGTAGTACTTTCTTCGTCTGAAAATA 59.728 37.037 0.00 0.00 33.70 1.40
566 568 8.573801 CGTAGTACTTTCTTCGTCTGAAAATAC 58.426 37.037 0.00 9.33 36.78 1.89
569 571 8.979574 AGTACTTTCTTCGTCTGAAAATACTTG 58.020 33.333 12.14 1.36 40.94 3.16
570 572 7.787725 ACTTTCTTCGTCTGAAAATACTTGT 57.212 32.000 0.00 0.00 33.70 3.16
572 574 7.494625 ACTTTCTTCGTCTGAAAATACTTGTCA 59.505 33.333 0.00 0.00 33.70 3.58
574 576 7.582435 TCTTCGTCTGAAAATACTTGTCATC 57.418 36.000 0.00 0.00 32.66 2.92
575 577 7.151976 TCTTCGTCTGAAAATACTTGTCATCA 58.848 34.615 0.00 0.00 32.66 3.07
576 578 7.655732 TCTTCGTCTGAAAATACTTGTCATCAA 59.344 33.333 0.00 0.00 32.66 2.57
577 579 7.905604 TCGTCTGAAAATACTTGTCATCAAT 57.094 32.000 0.00 0.00 32.82 2.57
578 580 7.963981 TCGTCTGAAAATACTTGTCATCAATC 58.036 34.615 0.00 0.00 32.82 2.67
579 581 7.602265 TCGTCTGAAAATACTTGTCATCAATCA 59.398 33.333 0.00 0.00 32.82 2.57
629 651 7.900782 AACATATATTATTTTCGGACGGAGG 57.099 36.000 0.00 0.00 0.00 4.30
630 652 6.403878 ACATATATTATTTTCGGACGGAGGG 58.596 40.000 0.00 0.00 0.00 4.30
631 653 6.211986 ACATATATTATTTTCGGACGGAGGGA 59.788 38.462 0.00 0.00 0.00 4.20
632 654 2.973694 TTATTTTCGGACGGAGGGAG 57.026 50.000 0.00 0.00 0.00 4.30
634 656 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
635 657 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
636 658 1.856629 TTTCGGACGGAGGGAGTATT 58.143 50.000 0.00 0.00 0.00 1.89
637 659 1.856629 TTCGGACGGAGGGAGTATTT 58.143 50.000 0.00 0.00 0.00 1.40
672 802 0.745468 GAGAACTGGTAGGGGCGTAG 59.255 60.000 0.00 0.00 0.00 3.51
673 803 0.686769 AGAACTGGTAGGGGCGTAGG 60.687 60.000 0.00 0.00 0.00 3.18
675 805 2.042230 CTGGTAGGGGCGTAGGGT 60.042 66.667 0.00 0.00 0.00 4.34
677 807 0.826672 CTGGTAGGGGCGTAGGGTAG 60.827 65.000 0.00 0.00 0.00 3.18
690 820 3.400188 GGTAGTCCCACCCACCAG 58.600 66.667 0.00 0.00 31.91 4.00
691 821 1.538135 GGTAGTCCCACCCACCAGT 60.538 63.158 0.00 0.00 31.91 4.00
692 822 1.677552 GTAGTCCCACCCACCAGTG 59.322 63.158 0.00 0.00 37.51 3.66
693 823 0.834687 GTAGTCCCACCCACCAGTGA 60.835 60.000 0.00 0.00 40.34 3.41
694 824 0.834687 TAGTCCCACCCACCAGTGAC 60.835 60.000 0.00 0.00 40.34 3.67
695 825 3.238497 TCCCACCCACCAGTGACG 61.238 66.667 0.00 0.00 40.34 4.35
698 828 1.374947 CCACCCACCAGTGACGAAT 59.625 57.895 0.00 0.00 40.34 3.34
702 832 2.742053 CACCCACCAGTGACGAATAAAG 59.258 50.000 0.00 0.00 40.34 1.85
711 841 4.056050 AGTGACGAATAAAGAAGCAACGT 58.944 39.130 0.00 0.00 35.31 3.99
900 1037 1.024579 CCACGCCCGCACTAATTTCT 61.025 55.000 0.00 0.00 0.00 2.52
981 1118 3.879427 CGATCGATCGCTTCTTCTTAGT 58.121 45.455 32.34 0.00 43.84 2.24
998 1135 3.303135 TTGACTCCGCGCTGTCCT 61.303 61.111 21.10 0.00 32.67 3.85
1158 1295 2.364317 CTCCGCCTCTCCTTCCCA 60.364 66.667 0.00 0.00 0.00 4.37
1208 1345 1.656441 CTCACCCAACACTTGCTGC 59.344 57.895 0.00 0.00 0.00 5.25
1220 1357 1.209019 ACTTGCTGCTCCTGATTCGAT 59.791 47.619 0.00 0.00 0.00 3.59
1227 1383 3.208594 TGCTCCTGATTCGATGGATTTG 58.791 45.455 0.00 0.00 0.00 2.32
1327 1483 2.158726 TCCCCATAACCGCTGTAATTCC 60.159 50.000 0.00 0.00 0.00 3.01
1330 1486 2.878406 CCATAACCGCTGTAATTCCCTG 59.122 50.000 0.00 0.00 0.00 4.45
1333 1489 0.328258 ACCGCTGTAATTCCCTGCTT 59.672 50.000 5.70 0.00 0.00 3.91
1334 1490 0.734889 CCGCTGTAATTCCCTGCTTG 59.265 55.000 5.70 0.00 0.00 4.01
1335 1491 1.678728 CCGCTGTAATTCCCTGCTTGA 60.679 52.381 5.70 0.00 0.00 3.02
1336 1492 2.292267 CGCTGTAATTCCCTGCTTGAT 58.708 47.619 5.70 0.00 0.00 2.57
1337 1493 3.466836 CGCTGTAATTCCCTGCTTGATA 58.533 45.455 5.70 0.00 0.00 2.15
1338 1494 3.876914 CGCTGTAATTCCCTGCTTGATAA 59.123 43.478 5.70 0.00 0.00 1.75
1339 1495 4.260784 CGCTGTAATTCCCTGCTTGATAAC 60.261 45.833 5.70 0.00 0.00 1.89
1340 1496 4.036852 GCTGTAATTCCCTGCTTGATAACC 59.963 45.833 0.00 0.00 0.00 2.85
1341 1497 4.532834 TGTAATTCCCTGCTTGATAACCC 58.467 43.478 0.00 0.00 0.00 4.11
1342 1498 3.756082 AATTCCCTGCTTGATAACCCA 57.244 42.857 0.00 0.00 0.00 4.51
1343 1499 2.806945 TTCCCTGCTTGATAACCCAG 57.193 50.000 0.00 0.00 0.00 4.45
1344 1500 1.965414 TCCCTGCTTGATAACCCAGA 58.035 50.000 0.00 0.00 0.00 3.86
1345 1501 2.274542 TCCCTGCTTGATAACCCAGAA 58.725 47.619 0.00 0.00 0.00 3.02
1346 1502 2.239654 TCCCTGCTTGATAACCCAGAAG 59.760 50.000 0.00 0.00 0.00 2.85
1347 1503 2.025887 CCCTGCTTGATAACCCAGAAGT 60.026 50.000 0.00 0.00 0.00 3.01
1348 1504 3.199946 CCCTGCTTGATAACCCAGAAGTA 59.800 47.826 0.00 0.00 0.00 2.24
1349 1505 4.141390 CCCTGCTTGATAACCCAGAAGTAT 60.141 45.833 0.00 0.00 0.00 2.12
1350 1506 5.440610 CCTGCTTGATAACCCAGAAGTATT 58.559 41.667 0.00 0.00 0.00 1.89
1351 1507 5.888161 CCTGCTTGATAACCCAGAAGTATTT 59.112 40.000 0.00 0.00 0.00 1.40
1352 1508 6.183360 CCTGCTTGATAACCCAGAAGTATTTG 60.183 42.308 0.00 0.00 0.00 2.32
1353 1509 5.125417 TGCTTGATAACCCAGAAGTATTTGC 59.875 40.000 0.00 0.00 0.00 3.68
1354 1510 5.358160 GCTTGATAACCCAGAAGTATTTGCT 59.642 40.000 0.00 0.00 0.00 3.91
1355 1511 6.127619 GCTTGATAACCCAGAAGTATTTGCTT 60.128 38.462 0.00 0.00 0.00 3.91
1356 1512 6.757897 TGATAACCCAGAAGTATTTGCTTG 57.242 37.500 0.00 0.00 0.00 4.01
1357 1513 3.942130 AACCCAGAAGTATTTGCTTGC 57.058 42.857 0.00 0.00 0.00 4.01
1358 1514 3.160679 ACCCAGAAGTATTTGCTTGCT 57.839 42.857 0.00 0.00 0.00 3.91
1359 1515 2.821969 ACCCAGAAGTATTTGCTTGCTG 59.178 45.455 0.00 0.00 0.00 4.41
1360 1516 2.821969 CCCAGAAGTATTTGCTTGCTGT 59.178 45.455 0.00 0.00 0.00 4.40
1361 1517 3.256631 CCCAGAAGTATTTGCTTGCTGTT 59.743 43.478 0.00 0.00 0.00 3.16
1362 1518 4.232221 CCAGAAGTATTTGCTTGCTGTTG 58.768 43.478 0.00 0.00 0.00 3.33
1363 1519 4.022935 CCAGAAGTATTTGCTTGCTGTTGA 60.023 41.667 0.00 0.00 0.00 3.18
1364 1520 5.152097 CAGAAGTATTTGCTTGCTGTTGAG 58.848 41.667 0.00 0.00 0.00 3.02
1365 1521 4.823989 AGAAGTATTTGCTTGCTGTTGAGT 59.176 37.500 0.00 0.00 0.00 3.41
1366 1522 4.756084 AGTATTTGCTTGCTGTTGAGTC 57.244 40.909 0.00 0.00 0.00 3.36
1367 1523 4.136796 AGTATTTGCTTGCTGTTGAGTCA 58.863 39.130 0.00 0.00 0.00 3.41
1368 1524 4.763793 AGTATTTGCTTGCTGTTGAGTCAT 59.236 37.500 0.00 0.00 0.00 3.06
1369 1525 5.939883 AGTATTTGCTTGCTGTTGAGTCATA 59.060 36.000 0.00 0.00 0.00 2.15
1370 1526 5.909621 ATTTGCTTGCTGTTGAGTCATAT 57.090 34.783 0.00 0.00 0.00 1.78
1371 1527 7.770433 AGTATTTGCTTGCTGTTGAGTCATATA 59.230 33.333 0.00 0.00 0.00 0.86
1372 1528 6.816134 TTTGCTTGCTGTTGAGTCATATAA 57.184 33.333 0.00 0.00 0.00 0.98
1373 1529 6.426980 TTGCTTGCTGTTGAGTCATATAAG 57.573 37.500 0.00 0.00 0.00 1.73
1374 1530 5.733676 TGCTTGCTGTTGAGTCATATAAGA 58.266 37.500 0.00 0.00 0.00 2.10
1375 1531 6.172630 TGCTTGCTGTTGAGTCATATAAGAA 58.827 36.000 0.00 0.00 0.00 2.52
1376 1532 6.825213 TGCTTGCTGTTGAGTCATATAAGAAT 59.175 34.615 0.00 0.00 0.00 2.40
1377 1533 7.986889 TGCTTGCTGTTGAGTCATATAAGAATA 59.013 33.333 0.00 0.00 0.00 1.75
1378 1534 8.279103 GCTTGCTGTTGAGTCATATAAGAATAC 58.721 37.037 0.00 0.00 0.00 1.89
1379 1535 9.539825 CTTGCTGTTGAGTCATATAAGAATACT 57.460 33.333 0.00 0.00 0.00 2.12
1380 1536 8.877808 TGCTGTTGAGTCATATAAGAATACTG 57.122 34.615 0.00 0.00 0.00 2.74
1381 1537 7.439356 TGCTGTTGAGTCATATAAGAATACTGC 59.561 37.037 0.00 2.41 0.00 4.40
1382 1538 7.439356 GCTGTTGAGTCATATAAGAATACTGCA 59.561 37.037 10.81 0.00 0.00 4.41
1383 1539 9.486497 CTGTTGAGTCATATAAGAATACTGCAT 57.514 33.333 0.00 0.00 0.00 3.96
1384 1540 9.481340 TGTTGAGTCATATAAGAATACTGCATC 57.519 33.333 0.00 0.00 0.00 3.91
1385 1541 8.930760 GTTGAGTCATATAAGAATACTGCATCC 58.069 37.037 0.00 0.00 0.00 3.51
1386 1542 8.193953 TGAGTCATATAAGAATACTGCATCCA 57.806 34.615 0.00 0.00 0.00 3.41
1387 1543 8.090831 TGAGTCATATAAGAATACTGCATCCAC 58.909 37.037 0.00 0.00 0.00 4.02
1388 1544 8.200024 AGTCATATAAGAATACTGCATCCACT 57.800 34.615 0.00 0.00 0.00 4.00
1389 1545 8.654997 AGTCATATAAGAATACTGCATCCACTT 58.345 33.333 0.00 0.00 0.00 3.16
1390 1546 8.715998 GTCATATAAGAATACTGCATCCACTTG 58.284 37.037 0.00 0.00 0.00 3.16
1391 1547 7.388776 TCATATAAGAATACTGCATCCACTTGC 59.611 37.037 0.00 0.00 43.07 4.01
1398 1554 3.547567 GCATCCACTTGCAGTCTCT 57.452 52.632 0.00 0.00 42.31 3.10
1399 1555 1.367659 GCATCCACTTGCAGTCTCTC 58.632 55.000 0.00 0.00 42.31 3.20
1400 1556 1.066286 GCATCCACTTGCAGTCTCTCT 60.066 52.381 0.00 0.00 42.31 3.10
1401 1557 2.614987 GCATCCACTTGCAGTCTCTCTT 60.615 50.000 0.00 0.00 42.31 2.85
1402 1558 3.260740 CATCCACTTGCAGTCTCTCTTC 58.739 50.000 0.00 0.00 0.00 2.87
1403 1559 2.319844 TCCACTTGCAGTCTCTCTTCA 58.680 47.619 0.00 0.00 0.00 3.02
1404 1560 2.298446 TCCACTTGCAGTCTCTCTTCAG 59.702 50.000 0.00 0.00 0.00 3.02
1405 1561 2.036992 CCACTTGCAGTCTCTCTTCAGT 59.963 50.000 0.00 0.00 0.00 3.41
1406 1562 3.256879 CCACTTGCAGTCTCTCTTCAGTA 59.743 47.826 0.00 0.00 0.00 2.74
1407 1563 4.233789 CACTTGCAGTCTCTCTTCAGTAC 58.766 47.826 0.00 0.00 0.00 2.73
1408 1564 4.022416 CACTTGCAGTCTCTCTTCAGTACT 60.022 45.833 0.00 0.00 0.00 2.73
1409 1565 5.182190 CACTTGCAGTCTCTCTTCAGTACTA 59.818 44.000 0.00 0.00 0.00 1.82
1410 1566 5.949354 ACTTGCAGTCTCTCTTCAGTACTAT 59.051 40.000 0.00 0.00 0.00 2.12
1411 1567 7.066404 CACTTGCAGTCTCTCTTCAGTACTATA 59.934 40.741 0.00 0.00 0.00 1.31
1412 1568 7.777910 ACTTGCAGTCTCTCTTCAGTACTATAT 59.222 37.037 0.00 0.00 0.00 0.86
1413 1569 9.278978 CTTGCAGTCTCTCTTCAGTACTATATA 57.721 37.037 0.00 0.00 0.00 0.86
1414 1570 9.800572 TTGCAGTCTCTCTTCAGTACTATATAT 57.199 33.333 0.00 0.00 0.00 0.86
1439 1595 2.787473 TTGATCCACAACAGCCTAGG 57.213 50.000 3.67 3.67 33.18 3.02
1440 1596 1.656587 TGATCCACAACAGCCTAGGT 58.343 50.000 11.31 0.00 0.00 3.08
1441 1597 1.985159 TGATCCACAACAGCCTAGGTT 59.015 47.619 11.31 0.00 0.00 3.50
1451 1607 2.879103 AGCCTAGGTTGCTGCTAAAA 57.121 45.000 11.31 0.00 37.76 1.52
1452 1608 2.437413 AGCCTAGGTTGCTGCTAAAAC 58.563 47.619 11.31 0.00 37.76 2.43
1453 1609 2.159382 GCCTAGGTTGCTGCTAAAACA 58.841 47.619 11.31 0.00 0.00 2.83
1454 1610 2.556622 GCCTAGGTTGCTGCTAAAACAA 59.443 45.455 11.31 0.00 0.00 2.83
1455 1611 3.193479 GCCTAGGTTGCTGCTAAAACAAT 59.807 43.478 11.31 0.00 0.00 2.71
1456 1612 4.398044 GCCTAGGTTGCTGCTAAAACAATA 59.602 41.667 11.31 0.00 0.00 1.90
1457 1613 5.105917 GCCTAGGTTGCTGCTAAAACAATAA 60.106 40.000 11.31 0.00 0.00 1.40
1458 1614 6.555315 CCTAGGTTGCTGCTAAAACAATAAG 58.445 40.000 0.00 0.00 0.00 1.73
1459 1615 6.151144 CCTAGGTTGCTGCTAAAACAATAAGT 59.849 38.462 0.00 0.00 0.00 2.24
1460 1616 6.405278 AGGTTGCTGCTAAAACAATAAGTT 57.595 33.333 0.00 0.00 43.89 2.66
1461 1617 7.519032 AGGTTGCTGCTAAAACAATAAGTTA 57.481 32.000 0.00 0.00 40.26 2.24
1462 1618 7.593825 AGGTTGCTGCTAAAACAATAAGTTAG 58.406 34.615 0.00 0.00 40.26 2.34
1463 1619 6.308041 GGTTGCTGCTAAAACAATAAGTTAGC 59.692 38.462 0.00 7.52 46.44 3.09
1474 1630 5.572896 AACAATAAGTTAGCATCTTTTGCGC 59.427 36.000 0.00 0.00 44.21 6.09
1475 1631 6.570378 AACAATAAGTTAGCATCTTTTGCGCT 60.570 34.615 9.73 0.00 44.21 5.92
1476 1632 8.307882 AACAATAAGTTAGCATCTTTTGCGCTC 61.308 37.037 9.73 0.00 44.21 5.03
1479 1635 3.277133 GCATCTTTTGCGCTCCCA 58.723 55.556 9.73 0.00 42.54 4.37
1480 1636 1.138247 GCATCTTTTGCGCTCCCAG 59.862 57.895 9.73 0.00 42.54 4.45
1481 1637 1.589716 GCATCTTTTGCGCTCCCAGT 61.590 55.000 9.73 0.00 42.54 4.00
1482 1638 0.449388 CATCTTTTGCGCTCCCAGTC 59.551 55.000 9.73 0.00 0.00 3.51
1483 1639 0.326264 ATCTTTTGCGCTCCCAGTCT 59.674 50.000 9.73 0.00 0.00 3.24
1484 1640 0.603707 TCTTTTGCGCTCCCAGTCTG 60.604 55.000 9.73 0.00 0.00 3.51
1485 1641 0.886490 CTTTTGCGCTCCCAGTCTGT 60.886 55.000 9.73 0.00 0.00 3.41
1486 1642 0.884704 TTTTGCGCTCCCAGTCTGTC 60.885 55.000 9.73 0.00 0.00 3.51
1487 1643 3.573772 TTGCGCTCCCAGTCTGTCG 62.574 63.158 9.73 0.00 0.00 4.35
1489 1645 3.753434 CGCTCCCAGTCTGTCGCT 61.753 66.667 0.00 0.00 0.00 4.93
1490 1646 2.407428 CGCTCCCAGTCTGTCGCTA 61.407 63.158 0.00 0.00 0.00 4.26
1491 1647 1.729470 CGCTCCCAGTCTGTCGCTAT 61.729 60.000 0.00 0.00 0.00 2.97
1492 1648 1.319541 GCTCCCAGTCTGTCGCTATA 58.680 55.000 0.00 0.00 0.00 1.31
1493 1649 1.268352 GCTCCCAGTCTGTCGCTATAG 59.732 57.143 0.00 0.00 0.00 1.31
1494 1650 2.852449 CTCCCAGTCTGTCGCTATAGA 58.148 52.381 3.21 0.00 0.00 1.98
1495 1651 3.215151 CTCCCAGTCTGTCGCTATAGAA 58.785 50.000 3.21 0.00 0.00 2.10
1496 1652 2.950309 TCCCAGTCTGTCGCTATAGAAC 59.050 50.000 3.21 1.32 0.00 3.01
1497 1653 2.688446 CCCAGTCTGTCGCTATAGAACA 59.312 50.000 3.21 6.11 0.00 3.18
1498 1654 3.130516 CCCAGTCTGTCGCTATAGAACAA 59.869 47.826 3.21 0.00 0.00 2.83
1499 1655 4.106197 CCAGTCTGTCGCTATAGAACAAC 58.894 47.826 3.21 7.97 0.00 3.32
1500 1656 4.380550 CCAGTCTGTCGCTATAGAACAACA 60.381 45.833 3.21 0.82 0.00 3.33
1501 1657 5.344066 CAGTCTGTCGCTATAGAACAACAT 58.656 41.667 3.21 0.00 0.00 2.71
1502 1658 5.230936 CAGTCTGTCGCTATAGAACAACATG 59.769 44.000 3.21 0.00 0.00 3.21
1503 1659 5.103000 GTCTGTCGCTATAGAACAACATGT 58.897 41.667 3.21 0.00 0.00 3.21
1504 1660 5.230306 GTCTGTCGCTATAGAACAACATGTC 59.770 44.000 3.21 0.00 0.00 3.06
1505 1661 5.066968 TGTCGCTATAGAACAACATGTCA 57.933 39.130 3.21 0.00 0.00 3.58
1506 1662 5.660460 TGTCGCTATAGAACAACATGTCAT 58.340 37.500 3.21 0.00 0.00 3.06
1507 1663 5.748630 TGTCGCTATAGAACAACATGTCATC 59.251 40.000 3.21 0.00 0.00 2.92
1508 1664 5.748630 GTCGCTATAGAACAACATGTCATCA 59.251 40.000 3.21 0.00 0.00 3.07
1509 1665 6.422100 GTCGCTATAGAACAACATGTCATCAT 59.578 38.462 3.21 0.00 34.21 2.45
1510 1666 6.986231 TCGCTATAGAACAACATGTCATCATT 59.014 34.615 3.21 0.00 31.15 2.57
1511 1667 7.495606 TCGCTATAGAACAACATGTCATCATTT 59.504 33.333 3.21 0.00 31.15 2.32
1512 1668 8.124823 CGCTATAGAACAACATGTCATCATTTT 58.875 33.333 3.21 0.00 31.15 1.82
1513 1669 9.443283 GCTATAGAACAACATGTCATCATTTTC 57.557 33.333 3.21 0.00 31.15 2.29
1516 1672 7.514784 AGAACAACATGTCATCATTTTCTCA 57.485 32.000 0.00 0.00 31.15 3.27
1517 1673 8.118976 AGAACAACATGTCATCATTTTCTCAT 57.881 30.769 0.00 0.00 31.15 2.90
1518 1674 8.242053 AGAACAACATGTCATCATTTTCTCATC 58.758 33.333 0.00 0.00 31.15 2.92
1519 1675 6.549061 ACAACATGTCATCATTTTCTCATCG 58.451 36.000 0.00 0.00 31.15 3.84
1520 1676 5.746307 ACATGTCATCATTTTCTCATCGG 57.254 39.130 0.00 0.00 31.15 4.18
1521 1677 5.188434 ACATGTCATCATTTTCTCATCGGT 58.812 37.500 0.00 0.00 31.15 4.69
1522 1678 5.649395 ACATGTCATCATTTTCTCATCGGTT 59.351 36.000 0.00 0.00 31.15 4.44
1523 1679 6.151648 ACATGTCATCATTTTCTCATCGGTTT 59.848 34.615 0.00 0.00 31.15 3.27
1524 1680 5.941733 TGTCATCATTTTCTCATCGGTTTG 58.058 37.500 0.00 0.00 0.00 2.93
1525 1681 5.704978 TGTCATCATTTTCTCATCGGTTTGA 59.295 36.000 0.00 0.00 0.00 2.69
1526 1682 6.206438 TGTCATCATTTTCTCATCGGTTTGAA 59.794 34.615 0.00 0.00 0.00 2.69
1527 1683 6.744537 GTCATCATTTTCTCATCGGTTTGAAG 59.255 38.462 0.00 0.00 0.00 3.02
1541 1697 9.840427 CATCGGTTTGAAGATTTAAAATGTAGT 57.160 29.630 0.00 0.00 0.00 2.73
1556 1712 7.801716 AAAATGTAGTGTAAGTTCTTGAGCA 57.198 32.000 0.00 0.00 0.00 4.26
1561 1717 5.741388 AGTGTAAGTTCTTGAGCACTTTG 57.259 39.130 1.58 0.00 33.74 2.77
1582 5588 4.257731 TGCATTATAACGAACCTCTTGCA 58.742 39.130 0.00 1.51 35.42 4.08
1591 5599 3.886505 ACGAACCTCTTGCACCAATTTAA 59.113 39.130 0.00 0.00 0.00 1.52
1593 5601 4.556233 GAACCTCTTGCACCAATTTAACC 58.444 43.478 0.00 0.00 0.00 2.85
1594 5602 2.897326 ACCTCTTGCACCAATTTAACCC 59.103 45.455 0.00 0.00 0.00 4.11
1605 5614 7.015682 TGCACCAATTTAACCCTTTTAGAATCA 59.984 33.333 0.00 0.00 0.00 2.57
1652 5661 6.037172 AGTGTACAAGTTACAAAAGCAGAGTG 59.963 38.462 0.00 0.00 0.00 3.51
1653 5662 4.900635 ACAAGTTACAAAAGCAGAGTGG 57.099 40.909 0.00 0.00 0.00 4.00
1654 5663 4.523083 ACAAGTTACAAAAGCAGAGTGGA 58.477 39.130 0.00 0.00 0.00 4.02
1655 5664 4.576463 ACAAGTTACAAAAGCAGAGTGGAG 59.424 41.667 0.00 0.00 0.00 3.86
1656 5665 3.142174 AGTTACAAAAGCAGAGTGGAGC 58.858 45.455 0.00 0.00 0.00 4.70
1657 5666 2.185004 TACAAAAGCAGAGTGGAGCC 57.815 50.000 0.00 0.00 0.00 4.70
1659 5668 0.879765 CAAAAGCAGAGTGGAGCCTG 59.120 55.000 0.00 0.00 0.00 4.85
1660 5669 0.251077 AAAAGCAGAGTGGAGCCTGG 60.251 55.000 0.00 0.00 0.00 4.45
1663 5672 0.031716 AGCAGAGTGGAGCCTGGATA 60.032 55.000 0.00 0.00 0.00 2.59
1665 5674 2.158249 AGCAGAGTGGAGCCTGGATATA 60.158 50.000 0.00 0.00 0.00 0.86
1666 5675 2.028567 GCAGAGTGGAGCCTGGATATAC 60.029 54.545 0.00 0.00 0.00 1.47
1673 5682 3.643320 TGGAGCCTGGATATACTGAACAG 59.357 47.826 0.00 0.00 0.00 3.16
1674 5683 3.898123 GGAGCCTGGATATACTGAACAGA 59.102 47.826 8.87 0.00 0.00 3.41
1675 5684 4.021544 GGAGCCTGGATATACTGAACAGAG 60.022 50.000 8.87 0.00 0.00 3.35
1676 5685 4.551671 AGCCTGGATATACTGAACAGAGT 58.448 43.478 8.87 0.00 0.00 3.24
1677 5686 4.343526 AGCCTGGATATACTGAACAGAGTG 59.656 45.833 8.87 0.00 0.00 3.51
1678 5687 4.502259 GCCTGGATATACTGAACAGAGTGG 60.502 50.000 8.87 0.00 0.00 4.00
1679 5688 4.895889 CCTGGATATACTGAACAGAGTGGA 59.104 45.833 8.87 0.00 0.00 4.02
1680 5689 5.541868 CCTGGATATACTGAACAGAGTGGAT 59.458 44.000 8.87 0.00 0.00 3.41
1681 5690 6.042552 CCTGGATATACTGAACAGAGTGGATT 59.957 42.308 8.87 0.00 0.00 3.01
1682 5691 6.820335 TGGATATACTGAACAGAGTGGATTG 58.180 40.000 8.87 0.00 0.00 2.67
1683 5692 6.384015 TGGATATACTGAACAGAGTGGATTGT 59.616 38.462 8.87 0.00 0.00 2.71
1685 5694 7.225538 GGATATACTGAACAGAGTGGATTGTTG 59.774 40.741 8.87 0.00 37.63 3.33
1686 5695 4.156455 ACTGAACAGAGTGGATTGTTGT 57.844 40.909 8.87 0.00 37.63 3.32
1687 5696 4.526970 ACTGAACAGAGTGGATTGTTGTT 58.473 39.130 8.87 0.00 37.63 2.83
1689 5698 4.780815 TGAACAGAGTGGATTGTTGTTCT 58.219 39.130 14.40 0.00 44.77 3.01
1690 5699 5.924356 TGAACAGAGTGGATTGTTGTTCTA 58.076 37.500 14.40 2.10 44.77 2.10
1691 5700 6.353323 TGAACAGAGTGGATTGTTGTTCTAA 58.647 36.000 14.40 0.00 44.77 2.10
1692 5701 6.998074 TGAACAGAGTGGATTGTTGTTCTAAT 59.002 34.615 14.40 0.00 44.77 1.73
1693 5702 6.808008 ACAGAGTGGATTGTTGTTCTAATG 57.192 37.500 0.00 0.00 0.00 1.90
1694 5703 6.299141 ACAGAGTGGATTGTTGTTCTAATGT 58.701 36.000 0.00 0.00 0.00 2.71
1696 5705 7.041098 ACAGAGTGGATTGTTGTTCTAATGTTC 60.041 37.037 0.00 0.00 0.00 3.18
1697 5706 7.173907 CAGAGTGGATTGTTGTTCTAATGTTCT 59.826 37.037 0.00 0.00 0.00 3.01
1698 5707 8.375506 AGAGTGGATTGTTGTTCTAATGTTCTA 58.624 33.333 0.00 0.00 0.00 2.10
1699 5708 8.324163 AGTGGATTGTTGTTCTAATGTTCTAC 57.676 34.615 0.00 0.00 0.00 2.59
1700 5709 8.157476 AGTGGATTGTTGTTCTAATGTTCTACT 58.843 33.333 0.00 0.00 0.00 2.57
1701 5710 9.431887 GTGGATTGTTGTTCTAATGTTCTACTA 57.568 33.333 0.00 0.00 0.00 1.82
1702 5711 9.431887 TGGATTGTTGTTCTAATGTTCTACTAC 57.568 33.333 0.00 0.00 0.00 2.73
1707 5716 9.692749 TGTTGTTCTAATGTTCTACTACTTCTG 57.307 33.333 0.00 0.00 0.00 3.02
1716 5725 8.824756 ATGTTCTACTACTTCTGTATCCTTGA 57.175 34.615 0.00 0.00 0.00 3.02
1725 5749 7.496346 ACTTCTGTATCCTTGAATTAGACCA 57.504 36.000 0.00 0.00 0.00 4.02
1732 5756 8.956426 TGTATCCTTGAATTAGACCACAAAATC 58.044 33.333 0.00 0.00 0.00 2.17
1736 5760 6.095440 CCTTGAATTAGACCACAAAATCGGAT 59.905 38.462 0.00 0.00 0.00 4.18
1752 5778 9.722056 CAAAATCGGATAAAGAACAGATAAAGG 57.278 33.333 0.00 0.00 0.00 3.11
1753 5779 8.451908 AAATCGGATAAAGAACAGATAAAGGG 57.548 34.615 0.00 0.00 0.00 3.95
1754 5780 6.555463 TCGGATAAAGAACAGATAAAGGGT 57.445 37.500 0.00 0.00 0.00 4.34
1778 5806 5.248477 TCCCAAGTCTCTAAGCATTTACAGT 59.752 40.000 0.00 0.00 0.00 3.55
1779 5807 5.582665 CCCAAGTCTCTAAGCATTTACAGTC 59.417 44.000 0.00 0.00 0.00 3.51
1780 5808 6.402222 CCAAGTCTCTAAGCATTTACAGTCT 58.598 40.000 0.00 0.00 0.00 3.24
1782 5810 6.842437 AGTCTCTAAGCATTTACAGTCTGA 57.158 37.500 6.91 0.00 0.00 3.27
1784 5812 7.264221 AGTCTCTAAGCATTTACAGTCTGATG 58.736 38.462 6.91 1.17 0.00 3.07
1791 5819 6.520272 AGCATTTACAGTCTGATGATACCTC 58.480 40.000 6.91 0.00 0.00 3.85
1792 5828 6.098838 AGCATTTACAGTCTGATGATACCTCA 59.901 38.462 6.91 0.00 35.41 3.86
1793 5829 6.201806 GCATTTACAGTCTGATGATACCTCAC 59.798 42.308 6.91 0.00 33.22 3.51
1805 5841 7.210174 TGATGATACCTCACTTGCTATTGTAC 58.790 38.462 0.00 0.00 33.22 2.90
1811 5852 6.717289 ACCTCACTTGCTATTGTACCATTAA 58.283 36.000 0.00 0.00 0.00 1.40
1846 5888 4.320608 TGCTCATTTTGTTCCCACTTTC 57.679 40.909 0.00 0.00 0.00 2.62
1869 5911 5.711036 TCCTTCTTAGACCACTGTTAGAGAC 59.289 44.000 0.00 0.00 0.00 3.36
1877 5919 3.082548 CCACTGTTAGAGACGAGGAAGA 58.917 50.000 0.00 0.00 0.00 2.87
1947 6012 0.806102 CTGCCGGAACATGTCCTACG 60.806 60.000 5.05 0.00 45.36 3.51
1965 6032 5.881637 CTACGAACATTTTTGTTTGTGGG 57.118 39.130 17.80 9.45 43.82 4.61
1993 6060 2.262423 AGGAGGTGAAGCACTGAAAC 57.738 50.000 0.00 0.00 34.40 2.78
1996 6063 2.038557 GGAGGTGAAGCACTGAAACCTA 59.961 50.000 0.00 0.00 41.33 3.08
2004 6073 6.595716 GTGAAGCACTGAAACCTACATCTATT 59.404 38.462 0.00 0.00 0.00 1.73
2007 6076 9.982651 GAAGCACTGAAACCTACATCTATTATA 57.017 33.333 0.00 0.00 0.00 0.98
2024 6094 9.646522 ATCTATTATATTGTTTCCAAGGCAGTT 57.353 29.630 0.00 0.00 33.17 3.16
2033 6103 7.015195 ATTGTTTCCAAGGCAGTTAAATACTGT 59.985 33.333 6.76 0.00 43.95 3.55
2242 6332 7.823745 AAATATATTTCGTGGCTGAATCCTT 57.176 32.000 4.81 0.00 0.00 3.36
2258 6348 7.048629 TGAATCCTTTTGCAAATGTCTTGTA 57.951 32.000 13.65 0.00 0.00 2.41
2401 6492 4.458989 TGCGAATTCAAGGTGCTAGAAAAT 59.541 37.500 6.22 0.00 0.00 1.82
2557 6683 5.262009 TGGATATTCGATCGTCTAGGGATT 58.738 41.667 15.94 0.00 0.00 3.01
2596 6725 1.191944 CAAGACCGTCGTCATCATCG 58.808 55.000 0.00 0.00 41.87 3.84
2597 6726 0.809385 AAGACCGTCGTCATCATCGT 59.191 50.000 0.00 0.00 41.87 3.73
2598 6727 0.809385 AGACCGTCGTCATCATCGTT 59.191 50.000 0.00 0.00 41.87 3.85
2704 6837 6.525578 ACGTGACCTGAATCTCAGTTTATA 57.474 37.500 3.15 0.00 42.80 0.98
2727 6860 1.666888 GCCACACGAATGCTTTGGAAG 60.667 52.381 1.30 0.00 0.00 3.46
2728 6861 1.879380 CCACACGAATGCTTTGGAAGA 59.121 47.619 1.30 0.00 0.00 2.87
2853 7023 3.616821 TCTGTTATTCGTTGATGCTTCGG 59.383 43.478 0.00 0.00 0.00 4.30
2882 7052 0.740868 ACGTGAATCTGACATGGCCG 60.741 55.000 0.00 0.00 0.00 6.13
2911 7081 6.644181 GCTCATCGATGATGTTCTCTTATTCA 59.356 38.462 27.43 0.49 40.55 2.57
2924 7094 9.230122 TGTTCTCTTATTCATGTTATCTTTGCA 57.770 29.630 0.00 0.00 0.00 4.08
2930 7100 9.162793 CTTATTCATGTTATCTTTGCAATCGTC 57.837 33.333 0.00 0.00 0.00 4.20
2949 7189 6.994868 TCGTCAAAATCGGGTAAATTTTTG 57.005 33.333 0.00 0.00 39.33 2.44
2950 7190 5.402867 TCGTCAAAATCGGGTAAATTTTTGC 59.597 36.000 0.00 0.00 38.38 3.68
2969 7271 3.159472 TGCTTCTGATTGGCAGTGATTT 58.841 40.909 0.00 0.00 45.14 2.17
2978 7280 4.846779 TTGGCAGTGATTTTTCTACCAC 57.153 40.909 0.00 0.00 28.19 4.16
2979 7281 4.098914 TGGCAGTGATTTTTCTACCACT 57.901 40.909 0.00 0.00 40.15 4.00
3068 7370 1.139947 GTCCGCTTCCTCTTCTCCG 59.860 63.158 0.00 0.00 0.00 4.63
3332 7682 1.811266 CGTCACAGCCCCATCGAAG 60.811 63.158 0.00 0.00 0.00 3.79
3335 7685 0.400213 TCACAGCCCCATCGAAGTTT 59.600 50.000 0.00 0.00 0.00 2.66
3336 7686 1.202879 TCACAGCCCCATCGAAGTTTT 60.203 47.619 0.00 0.00 0.00 2.43
3337 7687 1.613437 CACAGCCCCATCGAAGTTTTT 59.387 47.619 0.00 0.00 0.00 1.94
3338 7688 1.613437 ACAGCCCCATCGAAGTTTTTG 59.387 47.619 0.00 0.00 0.00 2.44
3345 7695 2.231235 CCATCGAAGTTTTTGGGGGAAG 59.769 50.000 0.00 0.00 0.00 3.46
3349 7699 1.691976 GAAGTTTTTGGGGGAAGGGTG 59.308 52.381 0.00 0.00 0.00 4.61
3355 7705 3.327404 GGGGGAAGGGTGCTTCGA 61.327 66.667 0.00 0.00 34.37 3.71
3362 7712 2.632377 GAAGGGTGCTTCGATTCATCA 58.368 47.619 0.00 0.00 0.00 3.07
3367 7717 5.192927 AGGGTGCTTCGATTCATCAAATTA 58.807 37.500 0.00 0.00 0.00 1.40
3368 7718 5.297776 AGGGTGCTTCGATTCATCAAATTAG 59.702 40.000 0.00 0.00 0.00 1.73
3369 7719 4.972440 GGTGCTTCGATTCATCAAATTAGC 59.028 41.667 0.00 0.00 32.03 3.09
3371 7721 6.204359 GTGCTTCGATTCATCAAATTAGCAT 58.796 36.000 3.63 0.00 38.10 3.79
3372 7722 6.359087 GTGCTTCGATTCATCAAATTAGCATC 59.641 38.462 3.63 0.00 38.10 3.91
3374 7724 6.359087 GCTTCGATTCATCAAATTAGCATCAC 59.641 38.462 0.00 0.00 31.85 3.06
3375 7725 6.304356 TCGATTCATCAAATTAGCATCACC 57.696 37.500 0.00 0.00 0.00 4.02
3376 7726 6.057533 TCGATTCATCAAATTAGCATCACCT 58.942 36.000 0.00 0.00 0.00 4.00
3377 7727 6.017687 TCGATTCATCAAATTAGCATCACCTG 60.018 38.462 0.00 0.00 0.00 4.00
3378 7728 6.017687 CGATTCATCAAATTAGCATCACCTGA 60.018 38.462 0.00 0.00 0.00 3.86
3379 7729 7.308408 CGATTCATCAAATTAGCATCACCTGAT 60.308 37.037 0.00 0.00 34.56 2.90
3380 7730 7.649533 TTCATCAAATTAGCATCACCTGATT 57.350 32.000 0.00 0.00 31.21 2.57
3381 7731 7.268199 TCATCAAATTAGCATCACCTGATTC 57.732 36.000 0.00 0.00 31.21 2.52
3382 7732 7.058525 TCATCAAATTAGCATCACCTGATTCT 58.941 34.615 0.00 0.00 32.92 2.40
3383 7733 6.688637 TCAAATTAGCATCACCTGATTCTG 57.311 37.500 0.00 0.00 30.90 3.02
3384 7734 6.417258 TCAAATTAGCATCACCTGATTCTGA 58.583 36.000 0.00 0.00 30.90 3.27
3385 7735 6.885918 TCAAATTAGCATCACCTGATTCTGAA 59.114 34.615 0.00 0.00 30.90 3.02
3386 7736 6.939132 AATTAGCATCACCTGATTCTGAAG 57.061 37.500 0.00 0.00 30.90 3.02
3387 7737 5.682234 TTAGCATCACCTGATTCTGAAGA 57.318 39.130 0.00 0.00 30.90 2.87
3388 7738 4.774660 AGCATCACCTGATTCTGAAGAT 57.225 40.909 0.00 0.00 31.21 2.40
3389 7739 4.706035 AGCATCACCTGATTCTGAAGATC 58.294 43.478 0.00 0.00 31.21 2.75
3390 7740 4.163649 AGCATCACCTGATTCTGAAGATCA 59.836 41.667 0.00 0.00 31.21 2.92
3391 7741 4.272991 GCATCACCTGATTCTGAAGATCAC 59.727 45.833 0.00 0.00 31.21 3.06
3450 7800 1.982660 TCGATATCCACGAGCTTCCT 58.017 50.000 0.00 0.00 34.85 3.36
3467 7817 2.334977 TCCTTTGAGCCCTGTGAGTTA 58.665 47.619 0.00 0.00 0.00 2.24
3485 7835 4.899502 AGTTAACTCATCAACCCACTCAG 58.100 43.478 1.12 0.00 0.00 3.35
3502 7852 0.541863 CAGTCCCTCCCGCTTGTATT 59.458 55.000 0.00 0.00 0.00 1.89
3511 7861 1.636340 CGCTTGTATTCGCGGAAGG 59.364 57.895 6.13 0.00 45.17 3.46
3541 7895 7.413438 GCAACTGTACCAGTAGAAATTGATCTG 60.413 40.741 0.00 0.00 44.62 2.90
3545 7899 4.775236 ACCAGTAGAAATTGATCTGGCTC 58.225 43.478 14.80 0.00 46.49 4.70
3598 7952 0.977395 AGAGCGGTGTTCTTAAGGCT 59.023 50.000 1.85 1.85 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 6.183360 GCATAATTAAAAGTTTCCGCCACAAG 60.183 38.462 0.00 0.00 0.00 3.16
80 81 8.201464 TGAAACCATATTATCAACTCGCTAGAA 58.799 33.333 0.00 0.00 0.00 2.10
125 126 7.707624 ATGTTTCATGTTTCTATCATGTGGT 57.292 32.000 5.94 0.00 42.03 4.16
164 165 2.092323 TGGTAGGACTCACACGAGATG 58.908 52.381 0.00 0.00 42.34 2.90
171 172 2.391926 TCCTGTTGGTAGGACTCACA 57.608 50.000 0.00 0.00 41.85 3.58
178 179 1.064825 ACACCCTTCCTGTTGGTAGG 58.935 55.000 1.38 1.38 46.74 3.18
184 185 2.104963 GACTCTGAACACCCTTCCTGTT 59.895 50.000 0.00 0.00 34.46 3.16
185 186 1.694696 GACTCTGAACACCCTTCCTGT 59.305 52.381 0.00 0.00 0.00 4.00
190 191 1.971357 ACGATGACTCTGAACACCCTT 59.029 47.619 0.00 0.00 0.00 3.95
193 194 2.724977 TCACGATGACTCTGAACACC 57.275 50.000 0.00 0.00 0.00 4.16
209 210 1.071605 GGACTTGCTCACGTGATCAC 58.928 55.000 20.89 16.21 0.00 3.06
215 216 0.687354 AGGAATGGACTTGCTCACGT 59.313 50.000 0.00 0.00 27.59 4.49
288 289 3.891366 CCCCTATAATTTGAGTGCCCTTG 59.109 47.826 0.00 0.00 0.00 3.61
291 292 2.158460 AGCCCCTATAATTTGAGTGCCC 60.158 50.000 0.00 0.00 0.00 5.36
305 306 1.340991 GGAGAAACATGCAAGCCCCTA 60.341 52.381 0.00 0.00 0.00 3.53
310 311 3.338249 TCTACTGGAGAAACATGCAAGC 58.662 45.455 0.00 0.00 0.00 4.01
318 319 7.421087 AAACCTATACCTCTACTGGAGAAAC 57.579 40.000 0.00 0.00 44.45 2.78
326 327 4.954826 AGCAACGAAACCTATACCTCTACT 59.045 41.667 0.00 0.00 0.00 2.57
327 328 5.259832 AGCAACGAAACCTATACCTCTAC 57.740 43.478 0.00 0.00 0.00 2.59
341 343 8.306038 TCTACTTATTACAAGGTTAGCAACGAA 58.694 33.333 0.00 0.00 0.00 3.85
342 344 7.829725 TCTACTTATTACAAGGTTAGCAACGA 58.170 34.615 0.00 0.00 0.00 3.85
358 360 9.710900 TGCATTCATACGATCATTCTACTTATT 57.289 29.630 0.00 0.00 0.00 1.40
359 361 9.710900 TTGCATTCATACGATCATTCTACTTAT 57.289 29.630 0.00 0.00 0.00 1.73
363 365 7.855545 AGTTTGCATTCATACGATCATTCTAC 58.144 34.615 0.00 0.00 30.83 2.59
364 366 8.437360 AAGTTTGCATTCATACGATCATTCTA 57.563 30.769 0.00 0.00 30.83 2.10
365 367 6.932356 AGTTTGCATTCATACGATCATTCT 57.068 33.333 0.00 0.00 30.83 2.40
366 368 7.188834 TGAAGTTTGCATTCATACGATCATTC 58.811 34.615 0.00 0.00 31.86 2.67
368 370 6.682423 TGAAGTTTGCATTCATACGATCAT 57.318 33.333 0.00 0.00 31.86 2.45
369 371 6.682423 ATGAAGTTTGCATTCATACGATCA 57.318 33.333 11.43 5.35 43.75 2.92
435 437 1.084289 GAACCACGGATGCTGGTAAC 58.916 55.000 8.37 4.04 41.45 2.50
444 446 2.621526 GTTTGTTTCTGGAACCACGGAT 59.378 45.455 0.00 0.00 37.45 4.18
459 461 4.934602 CACAAAAATGTGTCCCAGTTTGTT 59.065 37.500 0.88 0.00 40.24 2.83
491 493 7.430793 CACACAAAAACACGTCTTCATAAATGA 59.569 33.333 0.00 0.00 34.44 2.57
492 494 7.430793 TCACACAAAAACACGTCTTCATAAATG 59.569 33.333 0.00 0.00 0.00 2.32
493 495 7.431084 GTCACACAAAAACACGTCTTCATAAAT 59.569 33.333 0.00 0.00 0.00 1.40
494 496 6.743627 GTCACACAAAAACACGTCTTCATAAA 59.256 34.615 0.00 0.00 0.00 1.40
495 497 6.092944 AGTCACACAAAAACACGTCTTCATAA 59.907 34.615 0.00 0.00 0.00 1.90
497 499 4.394920 AGTCACACAAAAACACGTCTTCAT 59.605 37.500 0.00 0.00 0.00 2.57
498 500 3.749088 AGTCACACAAAAACACGTCTTCA 59.251 39.130 0.00 0.00 0.00 3.02
499 501 4.088648 CAGTCACACAAAAACACGTCTTC 58.911 43.478 0.00 0.00 0.00 2.87
503 505 2.095466 CACCAGTCACACAAAAACACGT 60.095 45.455 0.00 0.00 0.00 4.49
505 507 2.490115 TCCACCAGTCACACAAAAACAC 59.510 45.455 0.00 0.00 0.00 3.32
506 508 2.796557 TCCACCAGTCACACAAAAACA 58.203 42.857 0.00 0.00 0.00 2.83
507 509 3.859411 TTCCACCAGTCACACAAAAAC 57.141 42.857 0.00 0.00 0.00 2.43
508 510 6.462207 CCATAATTCCACCAGTCACACAAAAA 60.462 38.462 0.00 0.00 0.00 1.94
524 526 2.636403 ACTACGCCCCTACCATAATTCC 59.364 50.000 0.00 0.00 0.00 3.01
533 535 3.488216 CGAAGAAAGTACTACGCCCCTAC 60.488 52.174 0.00 0.00 0.00 3.18
544 546 8.762426 ACAAGTATTTTCAGACGAAGAAAGTAC 58.238 33.333 17.59 17.59 43.08 2.73
548 550 7.780008 TGACAAGTATTTTCAGACGAAGAAA 57.220 32.000 0.00 0.00 33.48 2.52
550 552 7.151976 TGATGACAAGTATTTTCAGACGAAGA 58.848 34.615 0.00 0.00 31.28 2.87
552 554 7.722795 TTGATGACAAGTATTTTCAGACGAA 57.277 32.000 0.00 0.00 0.00 3.85
555 557 9.897744 TTTGATTGATGACAAGTATTTTCAGAC 57.102 29.630 0.00 0.00 39.46 3.51
604 626 7.389607 CCCTCCGTCCGAAAATAATATATGTTT 59.610 37.037 0.00 0.00 0.00 2.83
606 628 6.211986 TCCCTCCGTCCGAAAATAATATATGT 59.788 38.462 0.00 0.00 0.00 2.29
609 631 5.776716 ACTCCCTCCGTCCGAAAATAATATA 59.223 40.000 0.00 0.00 0.00 0.86
611 633 3.962718 ACTCCCTCCGTCCGAAAATAATA 59.037 43.478 0.00 0.00 0.00 0.98
617 639 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
620 642 2.685850 AAAAATACTCCCTCCGTCCG 57.314 50.000 0.00 0.00 0.00 4.79
645 770 4.640647 GCCCCTACCAGTTCTCAAAAATAG 59.359 45.833 0.00 0.00 0.00 1.73
646 771 4.595986 GCCCCTACCAGTTCTCAAAAATA 58.404 43.478 0.00 0.00 0.00 1.40
653 778 0.745468 CTACGCCCCTACCAGTTCTC 59.255 60.000 0.00 0.00 0.00 2.87
660 785 0.825425 GACTACCCTACGCCCCTACC 60.825 65.000 0.00 0.00 0.00 3.18
673 803 1.538135 ACTGGTGGGTGGGACTACC 60.538 63.158 0.00 0.00 40.10 3.18
675 805 0.834687 GTCACTGGTGGGTGGGACTA 60.835 60.000 0.70 0.00 37.75 2.59
677 807 2.430367 GTCACTGGTGGGTGGGAC 59.570 66.667 0.70 0.00 37.75 4.46
682 812 2.635915 TCTTTATTCGTCACTGGTGGGT 59.364 45.455 0.70 0.00 0.00 4.51
684 814 3.125316 GCTTCTTTATTCGTCACTGGTGG 59.875 47.826 0.70 0.00 0.00 4.61
685 815 3.745975 TGCTTCTTTATTCGTCACTGGTG 59.254 43.478 0.00 0.00 0.00 4.17
687 817 4.666655 CGTTGCTTCTTTATTCGTCACTGG 60.667 45.833 0.00 0.00 0.00 4.00
688 818 4.084537 ACGTTGCTTCTTTATTCGTCACTG 60.085 41.667 0.00 0.00 0.00 3.66
689 819 4.056050 ACGTTGCTTCTTTATTCGTCACT 58.944 39.130 0.00 0.00 0.00 3.41
690 820 4.385244 ACGTTGCTTCTTTATTCGTCAC 57.615 40.909 0.00 0.00 0.00 3.67
691 821 6.183360 GGATTACGTTGCTTCTTTATTCGTCA 60.183 38.462 0.00 0.00 0.00 4.35
692 822 6.183324 GGATTACGTTGCTTCTTTATTCGTC 58.817 40.000 0.00 0.00 0.00 4.20
693 823 5.640357 TGGATTACGTTGCTTCTTTATTCGT 59.360 36.000 0.00 0.00 0.00 3.85
694 824 5.957796 GTGGATTACGTTGCTTCTTTATTCG 59.042 40.000 0.00 0.00 0.00 3.34
695 825 6.255950 GGTGGATTACGTTGCTTCTTTATTC 58.744 40.000 0.00 0.00 0.00 1.75
698 828 4.004982 GGGTGGATTACGTTGCTTCTTTA 58.995 43.478 0.00 0.00 0.00 1.85
702 832 0.725117 CGGGTGGATTACGTTGCTTC 59.275 55.000 0.00 0.00 0.00 3.86
963 1100 4.156190 AGTCAACTAAGAAGAAGCGATCGA 59.844 41.667 21.57 0.00 0.00 3.59
970 1107 2.917971 CGCGGAGTCAACTAAGAAGAAG 59.082 50.000 0.00 0.00 0.00 2.85
971 1108 2.925306 GCGCGGAGTCAACTAAGAAGAA 60.925 50.000 8.83 0.00 0.00 2.52
972 1109 1.402456 GCGCGGAGTCAACTAAGAAGA 60.402 52.381 8.83 0.00 0.00 2.87
973 1110 0.992802 GCGCGGAGTCAACTAAGAAG 59.007 55.000 8.83 0.00 0.00 2.85
974 1111 0.601558 AGCGCGGAGTCAACTAAGAA 59.398 50.000 8.83 0.00 0.00 2.52
975 1112 0.109272 CAGCGCGGAGTCAACTAAGA 60.109 55.000 8.83 0.00 0.00 2.10
976 1113 0.388649 ACAGCGCGGAGTCAACTAAG 60.389 55.000 16.26 0.00 0.00 2.18
977 1114 0.388134 GACAGCGCGGAGTCAACTAA 60.388 55.000 16.26 0.00 34.93 2.24
978 1115 1.211969 GACAGCGCGGAGTCAACTA 59.788 57.895 16.26 0.00 34.93 2.24
979 1116 2.049063 GACAGCGCGGAGTCAACT 60.049 61.111 16.26 0.00 34.93 3.16
980 1117 3.112709 GGACAGCGCGGAGTCAAC 61.113 66.667 24.56 10.54 36.50 3.18
981 1118 3.303135 AGGACAGCGCGGAGTCAA 61.303 61.111 24.56 0.00 36.50 3.18
1141 1278 1.990060 TTGGGAAGGAGAGGCGGAG 60.990 63.158 0.00 0.00 0.00 4.63
1208 1345 5.761726 TGAATCAAATCCATCGAATCAGGAG 59.238 40.000 0.00 0.00 34.40 3.69
1220 1357 3.673902 TCGAGCAACTGAATCAAATCCA 58.326 40.909 0.00 0.00 0.00 3.41
1227 1383 4.512657 CAAATCGATCGAGCAACTGAATC 58.487 43.478 23.84 0.00 0.00 2.52
1272 1428 1.106351 AACCACGCATTGAGCACCAA 61.106 50.000 0.00 0.00 46.13 3.67
1305 1461 3.497942 GGAATTACAGCGGTTATGGGGAT 60.498 47.826 0.00 0.00 0.00 3.85
1327 1483 3.356529 ACTTCTGGGTTATCAAGCAGG 57.643 47.619 0.00 0.00 0.00 4.85
1330 1486 5.358160 AGCAAATACTTCTGGGTTATCAAGC 59.642 40.000 0.00 0.00 0.00 4.01
1333 1489 5.125417 GCAAGCAAATACTTCTGGGTTATCA 59.875 40.000 0.00 0.00 0.00 2.15
1334 1490 5.358160 AGCAAGCAAATACTTCTGGGTTATC 59.642 40.000 0.00 0.00 0.00 1.75
1335 1491 5.126061 CAGCAAGCAAATACTTCTGGGTTAT 59.874 40.000 0.00 0.00 0.00 1.89
1336 1492 4.458989 CAGCAAGCAAATACTTCTGGGTTA 59.541 41.667 0.00 0.00 0.00 2.85
1337 1493 3.256631 CAGCAAGCAAATACTTCTGGGTT 59.743 43.478 0.00 0.00 0.00 4.11
1338 1494 2.821969 CAGCAAGCAAATACTTCTGGGT 59.178 45.455 0.00 0.00 0.00 4.51
1339 1495 2.821969 ACAGCAAGCAAATACTTCTGGG 59.178 45.455 0.00 0.00 33.15 4.45
1340 1496 4.022935 TCAACAGCAAGCAAATACTTCTGG 60.023 41.667 0.00 0.00 33.15 3.86
1341 1497 5.112220 TCAACAGCAAGCAAATACTTCTG 57.888 39.130 0.00 0.00 34.13 3.02
1342 1498 4.823989 ACTCAACAGCAAGCAAATACTTCT 59.176 37.500 0.00 0.00 0.00 2.85
1343 1499 5.113502 ACTCAACAGCAAGCAAATACTTC 57.886 39.130 0.00 0.00 0.00 3.01
1344 1500 4.580167 TGACTCAACAGCAAGCAAATACTT 59.420 37.500 0.00 0.00 0.00 2.24
1345 1501 4.136796 TGACTCAACAGCAAGCAAATACT 58.863 39.130 0.00 0.00 0.00 2.12
1346 1502 4.488126 TGACTCAACAGCAAGCAAATAC 57.512 40.909 0.00 0.00 0.00 1.89
1347 1503 8.504812 TTATATGACTCAACAGCAAGCAAATA 57.495 30.769 0.00 0.00 0.00 1.40
1348 1504 5.909621 ATATGACTCAACAGCAAGCAAAT 57.090 34.783 0.00 0.00 0.00 2.32
1349 1505 6.654582 TCTTATATGACTCAACAGCAAGCAAA 59.345 34.615 0.00 0.00 0.00 3.68
1350 1506 6.172630 TCTTATATGACTCAACAGCAAGCAA 58.827 36.000 0.00 0.00 0.00 3.91
1351 1507 5.733676 TCTTATATGACTCAACAGCAAGCA 58.266 37.500 0.00 0.00 0.00 3.91
1352 1508 6.668541 TTCTTATATGACTCAACAGCAAGC 57.331 37.500 0.00 0.00 0.00 4.01
1353 1509 9.539825 AGTATTCTTATATGACTCAACAGCAAG 57.460 33.333 0.00 0.00 0.00 4.01
1354 1510 9.317936 CAGTATTCTTATATGACTCAACAGCAA 57.682 33.333 0.00 0.00 0.00 3.91
1355 1511 7.439356 GCAGTATTCTTATATGACTCAACAGCA 59.561 37.037 0.00 0.00 0.00 4.41
1356 1512 7.439356 TGCAGTATTCTTATATGACTCAACAGC 59.561 37.037 0.00 0.00 0.00 4.40
1357 1513 8.877808 TGCAGTATTCTTATATGACTCAACAG 57.122 34.615 0.00 0.00 0.00 3.16
1358 1514 9.481340 GATGCAGTATTCTTATATGACTCAACA 57.519 33.333 0.00 0.00 0.00 3.33
1359 1515 8.930760 GGATGCAGTATTCTTATATGACTCAAC 58.069 37.037 0.00 0.00 0.00 3.18
1360 1516 8.650490 TGGATGCAGTATTCTTATATGACTCAA 58.350 33.333 0.00 0.00 0.00 3.02
1361 1517 8.090831 GTGGATGCAGTATTCTTATATGACTCA 58.909 37.037 0.00 0.00 0.00 3.41
1362 1518 8.310382 AGTGGATGCAGTATTCTTATATGACTC 58.690 37.037 0.00 0.00 0.00 3.36
1363 1519 8.200024 AGTGGATGCAGTATTCTTATATGACT 57.800 34.615 0.00 0.00 0.00 3.41
1364 1520 8.715998 CAAGTGGATGCAGTATTCTTATATGAC 58.284 37.037 0.00 0.00 0.00 3.06
1365 1521 7.388776 GCAAGTGGATGCAGTATTCTTATATGA 59.611 37.037 0.00 0.00 45.70 2.15
1366 1522 7.524912 GCAAGTGGATGCAGTATTCTTATATG 58.475 38.462 0.00 0.00 45.70 1.78
1367 1523 7.678947 GCAAGTGGATGCAGTATTCTTATAT 57.321 36.000 0.00 0.00 45.70 0.86
1387 1543 4.782019 AGTACTGAAGAGAGACTGCAAG 57.218 45.455 0.00 0.00 42.29 4.01
1388 1544 9.800572 ATATATAGTACTGAAGAGAGACTGCAA 57.199 33.333 5.39 0.00 33.16 4.08
1420 1576 1.985159 ACCTAGGCTGTTGTGGATCAA 59.015 47.619 9.30 0.00 0.00 2.57
1421 1577 1.656587 ACCTAGGCTGTTGTGGATCA 58.343 50.000 9.30 0.00 0.00 2.92
1422 1578 2.359900 CAACCTAGGCTGTTGTGGATC 58.640 52.381 9.30 0.00 38.58 3.36
1423 1579 1.614317 GCAACCTAGGCTGTTGTGGAT 60.614 52.381 13.65 0.00 43.86 3.41
1424 1580 0.250727 GCAACCTAGGCTGTTGTGGA 60.251 55.000 13.65 0.00 43.86 4.02
1425 1581 0.250901 AGCAACCTAGGCTGTTGTGG 60.251 55.000 13.65 5.48 43.86 4.17
1426 1582 3.329300 AGCAACCTAGGCTGTTGTG 57.671 52.632 13.65 2.04 43.86 3.33
1432 1588 2.224769 TGTTTTAGCAGCAACCTAGGCT 60.225 45.455 9.30 0.96 43.77 4.58
1433 1589 2.159382 TGTTTTAGCAGCAACCTAGGC 58.841 47.619 9.30 0.00 0.00 3.93
1434 1590 6.151144 ACTTATTGTTTTAGCAGCAACCTAGG 59.849 38.462 7.41 7.41 0.00 3.02
1435 1591 7.145932 ACTTATTGTTTTAGCAGCAACCTAG 57.854 36.000 0.00 0.00 0.00 3.02
1436 1592 7.519032 AACTTATTGTTTTAGCAGCAACCTA 57.481 32.000 0.00 0.00 34.84 3.08
1437 1593 6.405278 AACTTATTGTTTTAGCAGCAACCT 57.595 33.333 0.00 0.00 34.84 3.50
1438 1594 6.308041 GCTAACTTATTGTTTTAGCAGCAACC 59.692 38.462 7.52 0.00 44.73 3.77
1439 1595 7.265693 GCTAACTTATTGTTTTAGCAGCAAC 57.734 36.000 7.52 0.00 44.73 4.17
1463 1619 0.449388 GACTGGGAGCGCAAAAGATG 59.551 55.000 11.47 0.00 0.00 2.90
1464 1620 0.326264 AGACTGGGAGCGCAAAAGAT 59.674 50.000 11.47 0.00 0.00 2.40
1465 1621 0.603707 CAGACTGGGAGCGCAAAAGA 60.604 55.000 11.47 0.00 0.00 2.52
1466 1622 0.886490 ACAGACTGGGAGCGCAAAAG 60.886 55.000 11.47 3.80 0.00 2.27
1467 1623 0.884704 GACAGACTGGGAGCGCAAAA 60.885 55.000 11.47 0.00 0.00 2.44
1468 1624 1.301716 GACAGACTGGGAGCGCAAA 60.302 57.895 11.47 0.00 0.00 3.68
1469 1625 2.343758 GACAGACTGGGAGCGCAA 59.656 61.111 11.47 0.00 0.00 4.85
1470 1626 4.056125 CGACAGACTGGGAGCGCA 62.056 66.667 11.47 0.00 0.00 6.09
1472 1628 1.729470 ATAGCGACAGACTGGGAGCG 61.729 60.000 7.51 6.21 0.00 5.03
1473 1629 1.268352 CTATAGCGACAGACTGGGAGC 59.732 57.143 7.51 8.97 0.00 4.70
1474 1630 2.852449 TCTATAGCGACAGACTGGGAG 58.148 52.381 7.51 0.00 0.00 4.30
1475 1631 2.950309 GTTCTATAGCGACAGACTGGGA 59.050 50.000 7.51 0.00 0.00 4.37
1476 1632 2.688446 TGTTCTATAGCGACAGACTGGG 59.312 50.000 7.51 0.00 0.00 4.45
1477 1633 4.106197 GTTGTTCTATAGCGACAGACTGG 58.894 47.826 7.51 0.00 0.00 4.00
1478 1634 4.733850 TGTTGTTCTATAGCGACAGACTG 58.266 43.478 0.00 0.00 0.00 3.51
1479 1635 5.105716 ACATGTTGTTCTATAGCGACAGACT 60.106 40.000 0.00 0.00 33.11 3.24
1480 1636 5.103000 ACATGTTGTTCTATAGCGACAGAC 58.897 41.667 0.00 5.16 33.11 3.51
1481 1637 5.105917 TGACATGTTGTTCTATAGCGACAGA 60.106 40.000 0.00 0.00 33.11 3.41
1482 1638 5.102313 TGACATGTTGTTCTATAGCGACAG 58.898 41.667 0.00 0.00 33.11 3.51
1483 1639 5.066968 TGACATGTTGTTCTATAGCGACA 57.933 39.130 0.00 0.00 34.00 4.35
1484 1640 5.748630 TGATGACATGTTGTTCTATAGCGAC 59.251 40.000 0.00 0.00 0.00 5.19
1485 1641 5.901552 TGATGACATGTTGTTCTATAGCGA 58.098 37.500 0.00 0.00 0.00 4.93
1486 1642 6.775939 ATGATGACATGTTGTTCTATAGCG 57.224 37.500 0.00 0.00 35.21 4.26
1487 1643 9.443283 GAAAATGATGACATGTTGTTCTATAGC 57.557 33.333 0.00 0.00 34.48 2.97
1490 1646 9.234827 TGAGAAAATGATGACATGTTGTTCTAT 57.765 29.630 0.00 0.00 34.48 1.98
1491 1647 8.620116 TGAGAAAATGATGACATGTTGTTCTA 57.380 30.769 0.00 0.00 34.48 2.10
1492 1648 7.514784 TGAGAAAATGATGACATGTTGTTCT 57.485 32.000 0.00 0.00 34.48 3.01
1493 1649 7.217636 CGATGAGAAAATGATGACATGTTGTTC 59.782 37.037 0.00 0.00 34.48 3.18
1494 1650 7.025365 CGATGAGAAAATGATGACATGTTGTT 58.975 34.615 0.00 0.00 34.48 2.83
1495 1651 6.403964 CCGATGAGAAAATGATGACATGTTGT 60.404 38.462 0.00 0.00 34.48 3.32
1496 1652 5.969435 CCGATGAGAAAATGATGACATGTTG 59.031 40.000 0.00 0.00 34.48 3.33
1497 1653 5.649395 ACCGATGAGAAAATGATGACATGTT 59.351 36.000 0.00 0.00 36.74 2.71
1498 1654 5.188434 ACCGATGAGAAAATGATGACATGT 58.812 37.500 0.00 0.00 36.79 3.21
1499 1655 5.746307 ACCGATGAGAAAATGATGACATG 57.254 39.130 0.00 0.00 36.79 3.21
1500 1656 6.375174 TCAAACCGATGAGAAAATGATGACAT 59.625 34.615 0.00 0.00 38.50 3.06
1501 1657 5.704978 TCAAACCGATGAGAAAATGATGACA 59.295 36.000 0.00 0.00 0.00 3.58
1502 1658 6.182039 TCAAACCGATGAGAAAATGATGAC 57.818 37.500 0.00 0.00 0.00 3.06
1503 1659 6.654582 TCTTCAAACCGATGAGAAAATGATGA 59.345 34.615 0.00 0.00 0.00 2.92
1504 1660 6.845302 TCTTCAAACCGATGAGAAAATGATG 58.155 36.000 0.00 0.00 0.00 3.07
1505 1661 7.636150 ATCTTCAAACCGATGAGAAAATGAT 57.364 32.000 0.00 0.00 31.81 2.45
1506 1662 7.452880 AATCTTCAAACCGATGAGAAAATGA 57.547 32.000 0.00 0.00 31.81 2.57
1507 1663 9.624697 TTAAATCTTCAAACCGATGAGAAAATG 57.375 29.630 0.00 0.00 31.81 2.32
1511 1667 9.624697 CATTTTAAATCTTCAAACCGATGAGAA 57.375 29.630 0.00 0.00 31.81 2.87
1512 1668 8.792633 ACATTTTAAATCTTCAAACCGATGAGA 58.207 29.630 0.00 0.00 31.81 3.27
1513 1669 8.970691 ACATTTTAAATCTTCAAACCGATGAG 57.029 30.769 0.00 0.00 31.81 2.90
1515 1671 9.840427 ACTACATTTTAAATCTTCAAACCGATG 57.160 29.630 0.00 0.00 0.00 3.84
1516 1672 9.840427 CACTACATTTTAAATCTTCAAACCGAT 57.160 29.630 0.00 0.00 0.00 4.18
1517 1673 8.842280 ACACTACATTTTAAATCTTCAAACCGA 58.158 29.630 0.00 0.00 0.00 4.69
1535 1691 6.102897 AGTGCTCAAGAACTTACACTACAT 57.897 37.500 12.19 0.00 36.65 2.29
1541 1697 3.944650 TGCAAAGTGCTCAAGAACTTACA 59.055 39.130 3.79 3.63 42.93 2.41
1556 1712 6.622896 GCAAGAGGTTCGTTATAATGCAAAGT 60.623 38.462 0.00 0.00 0.00 2.66
1561 1717 4.495844 GGTGCAAGAGGTTCGTTATAATGC 60.496 45.833 0.00 0.00 0.00 3.56
1572 5578 3.323691 GGGTTAAATTGGTGCAAGAGGTT 59.676 43.478 0.00 0.00 0.00 3.50
1582 5588 8.929487 TGTTGATTCTAAAAGGGTTAAATTGGT 58.071 29.630 0.00 0.00 0.00 3.67
1591 5599 5.640147 TGGTCATGTTGATTCTAAAAGGGT 58.360 37.500 0.00 0.00 0.00 4.34
1593 5601 7.829725 TGAATGGTCATGTTGATTCTAAAAGG 58.170 34.615 11.78 0.00 0.00 3.11
1594 5602 9.350357 CTTGAATGGTCATGTTGATTCTAAAAG 57.650 33.333 11.78 6.37 32.48 2.27
1605 5614 4.665451 TGATGTCCTTGAATGGTCATGTT 58.335 39.130 0.00 0.00 36.33 2.71
1652 5661 3.898123 TCTGTTCAGTATATCCAGGCTCC 59.102 47.826 0.00 0.00 0.00 4.70
1653 5662 4.586841 ACTCTGTTCAGTATATCCAGGCTC 59.413 45.833 0.00 0.00 0.00 4.70
1654 5663 4.343526 CACTCTGTTCAGTATATCCAGGCT 59.656 45.833 0.00 0.00 0.00 4.58
1655 5664 4.502259 CCACTCTGTTCAGTATATCCAGGC 60.502 50.000 0.00 0.00 0.00 4.85
1656 5665 4.895889 TCCACTCTGTTCAGTATATCCAGG 59.104 45.833 0.00 0.00 0.00 4.45
1657 5666 6.662865 ATCCACTCTGTTCAGTATATCCAG 57.337 41.667 0.00 0.00 0.00 3.86
1659 5668 6.821388 ACAATCCACTCTGTTCAGTATATCC 58.179 40.000 0.00 0.00 0.00 2.59
1660 5669 7.766278 ACAACAATCCACTCTGTTCAGTATATC 59.234 37.037 0.00 0.00 33.51 1.63
1663 5672 5.869579 ACAACAATCCACTCTGTTCAGTAT 58.130 37.500 0.00 0.00 33.51 2.12
1665 5674 4.156455 ACAACAATCCACTCTGTTCAGT 57.844 40.909 0.00 0.00 33.51 3.41
1666 5675 4.818546 AGAACAACAATCCACTCTGTTCAG 59.181 41.667 13.84 0.00 45.30 3.02
1673 5682 7.440523 AGAACATTAGAACAACAATCCACTC 57.559 36.000 0.00 0.00 0.00 3.51
1674 5683 8.157476 AGTAGAACATTAGAACAACAATCCACT 58.843 33.333 0.00 0.00 0.00 4.00
1675 5684 8.324163 AGTAGAACATTAGAACAACAATCCAC 57.676 34.615 0.00 0.00 0.00 4.02
1676 5685 9.431887 GTAGTAGAACATTAGAACAACAATCCA 57.568 33.333 0.00 0.00 0.00 3.41
1677 5686 9.654663 AGTAGTAGAACATTAGAACAACAATCC 57.345 33.333 0.00 0.00 0.00 3.01
1681 5690 9.692749 CAGAAGTAGTAGAACATTAGAACAACA 57.307 33.333 0.00 0.00 0.00 3.33
1682 5691 9.694137 ACAGAAGTAGTAGAACATTAGAACAAC 57.306 33.333 0.00 0.00 0.00 3.32
1690 5699 9.256228 TCAAGGATACAGAAGTAGTAGAACATT 57.744 33.333 0.00 0.00 41.41 2.71
1691 5700 8.824756 TCAAGGATACAGAAGTAGTAGAACAT 57.175 34.615 0.00 0.00 41.41 2.71
1692 5701 8.645814 TTCAAGGATACAGAAGTAGTAGAACA 57.354 34.615 0.00 0.00 41.41 3.18
1698 5707 8.697292 GGTCTAATTCAAGGATACAGAAGTAGT 58.303 37.037 13.75 0.00 44.57 2.73
1699 5708 8.696374 TGGTCTAATTCAAGGATACAGAAGTAG 58.304 37.037 9.91 9.91 45.09 2.57
1700 5709 8.475639 GTGGTCTAATTCAAGGATACAGAAGTA 58.524 37.037 0.00 0.00 36.51 2.24
1701 5710 7.038302 TGTGGTCTAATTCAAGGATACAGAAGT 60.038 37.037 0.00 0.00 36.51 3.01
1702 5711 7.331026 TGTGGTCTAATTCAAGGATACAGAAG 58.669 38.462 0.00 0.00 36.51 2.85
1705 5714 7.921786 TTTGTGGTCTAATTCAAGGATACAG 57.078 36.000 0.00 0.00 41.41 2.74
1707 5716 8.122952 CGATTTTGTGGTCTAATTCAAGGATAC 58.877 37.037 0.00 0.00 0.00 2.24
1710 5719 5.414454 CCGATTTTGTGGTCTAATTCAAGGA 59.586 40.000 0.00 0.00 0.00 3.36
1711 5720 5.414454 TCCGATTTTGTGGTCTAATTCAAGG 59.586 40.000 0.00 0.00 0.00 3.61
1713 5722 8.568676 TTATCCGATTTTGTGGTCTAATTCAA 57.431 30.769 0.00 0.00 0.00 2.69
1714 5723 8.568676 TTTATCCGATTTTGTGGTCTAATTCA 57.431 30.769 0.00 0.00 0.00 2.57
1715 5724 8.889717 TCTTTATCCGATTTTGTGGTCTAATTC 58.110 33.333 0.00 0.00 0.00 2.17
1716 5725 8.801882 TCTTTATCCGATTTTGTGGTCTAATT 57.198 30.769 0.00 0.00 0.00 1.40
1723 5747 6.494893 TCTGTTCTTTATCCGATTTTGTGG 57.505 37.500 0.00 0.00 0.00 4.17
1732 5756 5.758784 GGACCCTTTATCTGTTCTTTATCCG 59.241 44.000 0.00 0.00 0.00 4.18
1736 5760 6.045106 ACTTGGGACCCTTTATCTGTTCTTTA 59.955 38.462 13.00 0.00 0.00 1.85
1752 5778 3.636153 AATGCTTAGAGACTTGGGACC 57.364 47.619 0.00 0.00 0.00 4.46
1753 5779 5.488341 TGTAAATGCTTAGAGACTTGGGAC 58.512 41.667 0.00 0.00 0.00 4.46
1754 5780 5.248477 ACTGTAAATGCTTAGAGACTTGGGA 59.752 40.000 0.00 0.00 33.59 4.37
1778 5806 6.098838 ACAATAGCAAGTGAGGTATCATCAGA 59.901 38.462 0.00 0.00 37.87 3.27
1779 5807 6.286758 ACAATAGCAAGTGAGGTATCATCAG 58.713 40.000 0.00 0.00 37.87 2.90
1780 5808 6.239217 ACAATAGCAAGTGAGGTATCATCA 57.761 37.500 0.00 0.00 37.87 3.07
1782 5810 6.099701 TGGTACAATAGCAAGTGAGGTATCAT 59.900 38.462 0.00 0.00 33.91 2.45
1784 5812 5.914033 TGGTACAATAGCAAGTGAGGTATC 58.086 41.667 0.00 0.00 31.92 2.24
1816 5857 8.229811 GTGGGAACAAAATGAGCAAAATAAATC 58.770 33.333 0.00 0.00 46.06 2.17
1833 5874 5.374071 GTCTAAGAAGGAAAGTGGGAACAA 58.626 41.667 0.00 0.00 46.06 2.83
1834 5875 4.202430 GGTCTAAGAAGGAAAGTGGGAACA 60.202 45.833 0.00 0.00 38.70 3.18
1835 5876 4.202430 TGGTCTAAGAAGGAAAGTGGGAAC 60.202 45.833 0.00 0.00 0.00 3.62
1836 5877 3.977999 TGGTCTAAGAAGGAAAGTGGGAA 59.022 43.478 0.00 0.00 0.00 3.97
1846 5888 5.392165 CGTCTCTAACAGTGGTCTAAGAAGG 60.392 48.000 0.00 0.00 0.00 3.46
1877 5919 1.552792 GCTCAACAGCTTCTAGGACCT 59.447 52.381 0.00 0.00 43.09 3.85
1898 5940 7.169035 TCTTTGTCTAACATTTCGTGTACAC 57.831 36.000 16.32 16.32 41.14 2.90
1902 5944 6.238374 CCACTTCTTTGTCTAACATTTCGTGT 60.238 38.462 0.00 0.00 44.84 4.49
1947 6012 6.457663 GGCTTAACCCACAAACAAAAATGTTC 60.458 38.462 0.00 0.00 0.00 3.18
1965 6032 1.813178 GCTTCACCTCCTTGGCTTAAC 59.187 52.381 0.00 0.00 40.22 2.01
2007 6076 7.539034 AGTATTTAACTGCCTTGGAAACAAT 57.461 32.000 0.00 0.00 43.30 2.71
2040 6113 5.573219 TGTGGAGACAGAATGGAAATCAAT 58.427 37.500 0.00 0.00 44.46 2.57
2231 6321 3.667360 ACATTTGCAAAAGGATTCAGCC 58.333 40.909 17.19 0.00 0.00 4.85
2242 6332 8.579006 AGAATTCAGATACAAGACATTTGCAAA 58.421 29.630 15.44 15.44 0.00 3.68
2375 6466 0.250901 AGCACCTTGAATTCGCAGGT 60.251 50.000 19.11 19.11 0.00 4.00
2401 6492 5.186215 TCAACGGTTATGACTTCAGGTATGA 59.814 40.000 0.00 0.00 0.00 2.15
2557 6683 2.158769 TGCAGCTTCAGTTCCTTGAGAA 60.159 45.455 0.00 0.00 0.00 2.87
2704 6837 1.337074 CCAAAGCATTCGTGTGGCAAT 60.337 47.619 0.00 0.00 0.00 3.56
2727 6860 5.649782 AACAACTTCCATTGGATCATGTC 57.350 39.130 6.15 0.00 33.63 3.06
2728 6861 6.423776 AAAACAACTTCCATTGGATCATGT 57.576 33.333 6.15 8.81 33.63 3.21
2781 6914 9.555727 AAAAAGAGCAAGTCAACTGTAATAGTA 57.444 29.630 0.00 0.00 39.18 1.82
2785 6918 6.038271 ACGAAAAAGAGCAAGTCAACTGTAAT 59.962 34.615 0.00 0.00 0.00 1.89
2853 7023 4.743151 TGTCAGATTCACGTGACAGTTAAC 59.257 41.667 19.90 12.69 46.35 2.01
2882 7052 1.869767 GAACATCATCGATGAGCCACC 59.130 52.381 30.11 15.58 42.09 4.61
2911 7081 7.218773 CGATTTTGACGATTGCAAAGATAACAT 59.781 33.333 1.71 1.40 36.68 2.71
2924 7094 7.359681 GCAAAAATTTACCCGATTTTGACGATT 60.360 33.333 12.49 0.00 42.48 3.34
2930 7100 7.170658 TCAGAAGCAAAAATTTACCCGATTTTG 59.829 33.333 5.67 5.67 42.66 2.44
2949 7189 3.863142 AAATCACTGCCAATCAGAAGC 57.137 42.857 0.00 0.00 45.72 3.86
2950 7190 6.022163 AGAAAAATCACTGCCAATCAGAAG 57.978 37.500 0.00 0.00 45.72 2.85
2969 7271 3.803715 GCTTGTGCTGAGAGTGGTAGAAA 60.804 47.826 0.00 0.00 36.03 2.52
2978 7280 1.898459 CTGTGCGCTTGTGCTGAGAG 61.898 60.000 9.73 0.00 36.97 3.20
2979 7281 1.957695 CTGTGCGCTTGTGCTGAGA 60.958 57.895 9.73 0.00 36.97 3.27
3315 7645 0.321653 AACTTCGATGGGGCTGTGAC 60.322 55.000 3.12 0.00 0.00 3.67
3324 7674 1.917872 TCCCCCAAAAACTTCGATGG 58.082 50.000 3.12 0.00 0.00 3.51
3332 7682 0.762842 AGCACCCTTCCCCCAAAAAC 60.763 55.000 0.00 0.00 0.00 2.43
3335 7685 1.155155 GAAGCACCCTTCCCCCAAA 59.845 57.895 0.00 0.00 41.30 3.28
3336 7686 2.851045 GAAGCACCCTTCCCCCAA 59.149 61.111 0.00 0.00 41.30 4.12
3337 7687 3.646715 CGAAGCACCCTTCCCCCA 61.647 66.667 0.00 0.00 43.66 4.96
3338 7688 2.211468 AATCGAAGCACCCTTCCCCC 62.211 60.000 0.00 0.00 43.66 5.40
3345 7695 4.376340 AATTTGATGAATCGAAGCACCC 57.624 40.909 0.00 0.00 33.92 4.61
3349 7699 6.359087 GTGATGCTAATTTGATGAATCGAAGC 59.641 38.462 0.00 0.00 33.92 3.86
3355 7705 7.834881 ATCAGGTGATGCTAATTTGATGAAT 57.165 32.000 0.00 0.00 32.68 2.57
3362 7712 7.114754 TCTTCAGAATCAGGTGATGCTAATTT 58.885 34.615 0.00 0.00 38.37 1.82
3367 7717 4.163649 TGATCTTCAGAATCAGGTGATGCT 59.836 41.667 0.00 0.00 41.08 3.79
3368 7718 4.272991 GTGATCTTCAGAATCAGGTGATGC 59.727 45.833 0.00 0.00 34.49 3.91
3369 7719 5.672503 AGTGATCTTCAGAATCAGGTGATG 58.327 41.667 0.00 0.00 34.49 3.07
3371 7721 5.012458 ACAAGTGATCTTCAGAATCAGGTGA 59.988 40.000 0.00 0.00 0.00 4.02
3372 7722 5.243981 ACAAGTGATCTTCAGAATCAGGTG 58.756 41.667 0.00 0.00 0.00 4.00
3374 7724 5.704515 ACAACAAGTGATCTTCAGAATCAGG 59.295 40.000 0.00 0.00 0.00 3.86
3375 7725 6.798315 ACAACAAGTGATCTTCAGAATCAG 57.202 37.500 0.00 0.00 0.00 2.90
3376 7726 7.572523 AAACAACAAGTGATCTTCAGAATCA 57.427 32.000 0.00 0.00 0.00 2.57
3377 7727 8.749499 CAAAAACAACAAGTGATCTTCAGAATC 58.251 33.333 0.00 0.00 0.00 2.52
3378 7728 7.223387 GCAAAAACAACAAGTGATCTTCAGAAT 59.777 33.333 0.00 0.00 0.00 2.40
3379 7729 6.531240 GCAAAAACAACAAGTGATCTTCAGAA 59.469 34.615 0.00 0.00 0.00 3.02
3380 7730 6.035843 GCAAAAACAACAAGTGATCTTCAGA 58.964 36.000 0.00 0.00 0.00 3.27
3381 7731 5.806502 TGCAAAAACAACAAGTGATCTTCAG 59.193 36.000 0.00 0.00 0.00 3.02
3382 7732 5.718146 TGCAAAAACAACAAGTGATCTTCA 58.282 33.333 0.00 0.00 0.00 3.02
3383 7733 6.035843 TCTGCAAAAACAACAAGTGATCTTC 58.964 36.000 0.00 0.00 0.00 2.87
3384 7734 5.964758 TCTGCAAAAACAACAAGTGATCTT 58.035 33.333 0.00 0.00 0.00 2.40
3385 7735 5.581126 TCTGCAAAAACAACAAGTGATCT 57.419 34.783 0.00 0.00 0.00 2.75
3386 7736 5.176223 CCATCTGCAAAAACAACAAGTGATC 59.824 40.000 0.00 0.00 0.00 2.92
3387 7737 5.051816 CCATCTGCAAAAACAACAAGTGAT 58.948 37.500 0.00 0.00 0.00 3.06
3388 7738 4.431809 CCATCTGCAAAAACAACAAGTGA 58.568 39.130 0.00 0.00 0.00 3.41
3389 7739 3.001533 GCCATCTGCAAAAACAACAAGTG 59.998 43.478 0.00 0.00 40.77 3.16
3390 7740 3.197265 GCCATCTGCAAAAACAACAAGT 58.803 40.909 0.00 0.00 40.77 3.16
3391 7741 2.219216 CGCCATCTGCAAAAACAACAAG 59.781 45.455 0.00 0.00 41.33 3.16
3423 7773 3.615110 GCTCGTGGATATCGAACCATGAT 60.615 47.826 22.47 0.00 46.60 2.45
3450 7800 3.740115 GAGTTAACTCACAGGGCTCAAA 58.260 45.455 27.12 0.00 42.42 2.69
3467 7817 2.039084 GGACTGAGTGGGTTGATGAGTT 59.961 50.000 0.00 0.00 0.00 3.01
3474 7824 1.679898 GGAGGGACTGAGTGGGTTG 59.320 63.158 0.00 0.00 41.55 3.77
3475 7825 1.539124 GGGAGGGACTGAGTGGGTT 60.539 63.158 0.00 0.00 41.55 4.11
3476 7826 2.122954 GGGAGGGACTGAGTGGGT 59.877 66.667 0.00 0.00 41.55 4.51
3477 7827 3.077556 CGGGAGGGACTGAGTGGG 61.078 72.222 0.00 0.00 41.55 4.61
3478 7828 3.775654 GCGGGAGGGACTGAGTGG 61.776 72.222 0.00 0.00 41.55 4.00
3482 7832 0.325296 ATACAAGCGGGAGGGACTGA 60.325 55.000 0.00 0.00 41.55 3.41
3485 7835 0.529992 CGAATACAAGCGGGAGGGAC 60.530 60.000 0.00 0.00 0.00 4.46
3502 7852 4.388499 GTTGCCTCCCTTCCGCGA 62.388 66.667 8.23 0.00 0.00 5.87
3509 7859 4.660521 TGGTACAGTTGCCTCCCT 57.339 55.556 0.00 0.00 0.00 4.20
3527 7881 7.066766 ACAGATTTGAGCCAGATCAATTTCTAC 59.933 37.037 0.00 0.00 38.90 2.59
3534 7888 8.985315 ATATTTACAGATTTGAGCCAGATCAA 57.015 30.769 0.00 0.00 37.41 2.57
3541 7895 8.465273 AACCCTAATATTTACAGATTTGAGCC 57.535 34.615 0.00 0.00 0.00 4.70
3545 7899 7.360361 GGCGAACCCTAATATTTACAGATTTG 58.640 38.462 0.00 0.00 0.00 2.32
3598 7952 1.965930 GGCGTGCACATTCTCCACA 60.966 57.895 18.64 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.