Multiple sequence alignment - TraesCS2A01G542900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G542900 chr2A 100.000 3167 0 0 1 3167 753228098 753231264 0.000000e+00 5849.0
1 TraesCS2A01G542900 chr2A 96.809 188 5 1 1 187 753214012 753214199 2.370000e-81 313.0
2 TraesCS2A01G542900 chr2A 93.878 98 3 2 90 185 753214200 753214296 9.160000e-31 145.0
3 TraesCS2A01G542900 chr2D 85.726 2452 163 90 138 2508 621495315 621497660 0.000000e+00 2416.0
4 TraesCS2A01G542900 chr2D 79.528 254 22 14 2821 3052 621498066 621498311 1.520000e-33 154.0
5 TraesCS2A01G542900 chr2D 86.517 89 11 1 2210 2298 621502193 621502280 2.600000e-16 97.1
6 TraesCS2A01G542900 chr2B 85.563 1704 112 57 138 1803 762428928 762430535 0.000000e+00 1661.0
7 TraesCS2A01G542900 chr2B 88.109 513 22 18 1824 2323 762430605 762431091 9.850000e-160 573.0
8 TraesCS2A01G542900 chr2B 79.231 260 31 16 2531 2779 762431339 762431586 3.270000e-35 159.0
9 TraesCS2A01G542900 chr2B 82.796 186 11 7 2886 3055 762431729 762431909 2.550000e-31 147.0
10 TraesCS2A01G542900 chr3D 89.840 187 14 3 1205 1389 554140221 554140404 5.280000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G542900 chr2A 753228098 753231264 3166 False 5849.000000 5849 100.000000 1 3167 1 chr2A.!!$F1 3166
1 TraesCS2A01G542900 chr2D 621495315 621502280 6965 False 889.033333 2416 83.923667 138 3052 3 chr2D.!!$F1 2914
2 TraesCS2A01G542900 chr2B 762428928 762431909 2981 False 635.000000 1661 83.924750 138 3055 4 chr2B.!!$F1 2917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.039618 TCCTCAACATCCTTTGGGCC 59.960 55.0 0.00 0.0 0.00 5.80 F
403 414 0.242017 GACGGCACTTGGTACGTACT 59.758 55.0 24.07 2.4 39.95 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2051 2194 0.698818 AATGGCGAGGGAAGAAAGGT 59.301 50.0 0.0 0.0 0.00 3.50 R
2397 2562 0.379760 CAACAACAACGACGACGACG 60.380 55.0 17.6 17.6 42.66 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.021596 ACAGTAATCTAGAAAATTTTGCGCG 58.978 36.000 8.47 0.00 0.00 6.86
35 36 6.128391 ACAGTAATCTAGAAAATTTTGCGCGA 60.128 34.615 12.10 0.00 0.00 5.87
36 37 6.740905 CAGTAATCTAGAAAATTTTGCGCGAA 59.259 34.615 12.10 5.81 0.00 4.70
37 38 7.270365 CAGTAATCTAGAAAATTTTGCGCGAAA 59.730 33.333 24.37 24.37 0.00 3.46
38 39 7.968405 AGTAATCTAGAAAATTTTGCGCGAAAT 59.032 29.630 26.50 26.50 0.00 2.17
39 40 6.796629 ATCTAGAAAATTTTGCGCGAAATC 57.203 33.333 30.67 21.26 0.00 2.17
40 41 3.952174 AGAAAATTTTGCGCGAAATCG 57.048 38.095 30.67 0.00 43.27 3.34
50 51 2.267642 CGAAATCGCCCCTCCACA 59.732 61.111 0.00 0.00 0.00 4.17
51 52 1.376683 CGAAATCGCCCCTCCACAA 60.377 57.895 0.00 0.00 0.00 3.33
52 53 1.369091 CGAAATCGCCCCTCCACAAG 61.369 60.000 0.00 0.00 0.00 3.16
53 54 1.000896 AAATCGCCCCTCCACAAGG 60.001 57.895 0.00 0.00 45.77 3.61
54 55 1.789576 AAATCGCCCCTCCACAAGGT 61.790 55.000 0.00 0.00 44.56 3.50
55 56 1.789576 AATCGCCCCTCCACAAGGTT 61.790 55.000 0.00 0.00 44.56 3.50
56 57 1.789576 ATCGCCCCTCCACAAGGTTT 61.790 55.000 0.00 0.00 44.56 3.27
57 58 1.128809 TCGCCCCTCCACAAGGTTTA 61.129 55.000 0.00 0.00 44.56 2.01
58 59 0.958876 CGCCCCTCCACAAGGTTTAC 60.959 60.000 0.00 0.00 44.56 2.01
59 60 0.611062 GCCCCTCCACAAGGTTTACC 60.611 60.000 0.00 0.00 44.56 2.85
60 61 0.774908 CCCCTCCACAAGGTTTACCA 59.225 55.000 1.13 0.00 44.56 3.25
61 62 1.546998 CCCCTCCACAAGGTTTACCAC 60.547 57.143 1.13 0.00 44.56 4.16
71 72 1.777941 GGTTTACCACCAACCAACCA 58.222 50.000 0.00 0.00 46.42 3.67
72 73 2.108970 GGTTTACCACCAACCAACCAA 58.891 47.619 0.00 0.00 46.42 3.67
73 74 2.159071 GGTTTACCACCAACCAACCAAC 60.159 50.000 0.00 0.00 46.42 3.77
74 75 1.777941 TTACCACCAACCAACCAACC 58.222 50.000 0.00 0.00 0.00 3.77
75 76 0.106116 TACCACCAACCAACCAACCC 60.106 55.000 0.00 0.00 0.00 4.11
76 77 2.137528 CCACCAACCAACCAACCCC 61.138 63.158 0.00 0.00 0.00 4.95
77 78 1.075600 CACCAACCAACCAACCCCT 60.076 57.895 0.00 0.00 0.00 4.79
78 79 1.075600 ACCAACCAACCAACCCCTG 60.076 57.895 0.00 0.00 0.00 4.45
79 80 1.075600 CCAACCAACCAACCCCTGT 60.076 57.895 0.00 0.00 0.00 4.00
80 81 0.689412 CCAACCAACCAACCCCTGTT 60.689 55.000 0.00 0.00 34.14 3.16
81 82 0.750249 CAACCAACCAACCCCTGTTC 59.250 55.000 0.00 0.00 30.42 3.18
82 83 0.753848 AACCAACCAACCCCTGTTCG 60.754 55.000 0.00 0.00 30.42 3.95
83 84 1.152839 CCAACCAACCCCTGTTCGT 60.153 57.895 0.00 0.00 30.42 3.85
84 85 1.170290 CCAACCAACCCCTGTTCGTC 61.170 60.000 0.00 0.00 30.42 4.20
85 86 1.149854 AACCAACCCCTGTTCGTCC 59.850 57.895 0.00 0.00 30.42 4.79
86 87 1.350310 AACCAACCCCTGTTCGTCCT 61.350 55.000 0.00 0.00 30.42 3.85
87 88 1.003718 CCAACCCCTGTTCGTCCTC 60.004 63.158 0.00 0.00 30.42 3.71
88 89 1.752198 CAACCCCTGTTCGTCCTCA 59.248 57.895 0.00 0.00 30.42 3.86
89 90 0.107831 CAACCCCTGTTCGTCCTCAA 59.892 55.000 0.00 0.00 30.42 3.02
90 91 0.108019 AACCCCTGTTCGTCCTCAAC 59.892 55.000 0.00 0.00 0.00 3.18
91 92 1.052124 ACCCCTGTTCGTCCTCAACA 61.052 55.000 0.00 0.00 32.75 3.33
92 93 0.324943 CCCCTGTTCGTCCTCAACAT 59.675 55.000 0.00 0.00 33.30 2.71
93 94 1.676014 CCCCTGTTCGTCCTCAACATC 60.676 57.143 0.00 0.00 33.30 3.06
94 95 1.676014 CCCTGTTCGTCCTCAACATCC 60.676 57.143 0.00 0.00 33.30 3.51
95 96 1.276421 CCTGTTCGTCCTCAACATCCT 59.724 52.381 0.00 0.00 33.30 3.24
96 97 2.289694 CCTGTTCGTCCTCAACATCCTT 60.290 50.000 0.00 0.00 33.30 3.36
97 98 3.403038 CTGTTCGTCCTCAACATCCTTT 58.597 45.455 0.00 0.00 33.30 3.11
98 99 3.138304 TGTTCGTCCTCAACATCCTTTG 58.862 45.455 0.00 0.00 0.00 2.77
99 100 2.472695 TCGTCCTCAACATCCTTTGG 57.527 50.000 0.00 0.00 0.00 3.28
100 101 1.003118 TCGTCCTCAACATCCTTTGGG 59.997 52.381 0.00 0.00 0.00 4.12
101 102 1.177401 GTCCTCAACATCCTTTGGGC 58.823 55.000 0.00 0.00 0.00 5.36
102 103 0.039618 TCCTCAACATCCTTTGGGCC 59.960 55.000 0.00 0.00 0.00 5.80
103 104 1.315257 CCTCAACATCCTTTGGGCCG 61.315 60.000 0.00 0.00 0.00 6.13
104 105 0.322456 CTCAACATCCTTTGGGCCGA 60.322 55.000 0.00 0.00 0.00 5.54
105 106 0.608035 TCAACATCCTTTGGGCCGAC 60.608 55.000 0.00 0.00 0.00 4.79
106 107 1.304134 AACATCCTTTGGGCCGACC 60.304 57.895 0.00 0.00 40.81 4.79
107 108 1.789576 AACATCCTTTGGGCCGACCT 61.790 55.000 0.00 0.00 41.11 3.85
108 109 1.750399 CATCCTTTGGGCCGACCTG 60.750 63.158 0.00 0.00 41.11 4.00
109 110 2.983879 ATCCTTTGGGCCGACCTGG 61.984 63.158 0.00 0.00 41.11 4.45
110 111 3.646715 CCTTTGGGCCGACCTGGA 61.647 66.667 0.00 0.00 42.00 3.86
118 119 3.991051 CCGACCTGGACACACGCT 61.991 66.667 0.00 0.00 42.00 5.07
119 120 2.430921 CGACCTGGACACACGCTC 60.431 66.667 0.00 0.00 0.00 5.03
120 121 2.430921 GACCTGGACACACGCTCG 60.431 66.667 0.00 0.00 0.00 5.03
121 122 4.664677 ACCTGGACACACGCTCGC 62.665 66.667 0.00 0.00 0.00 5.03
122 123 4.662961 CCTGGACACACGCTCGCA 62.663 66.667 0.00 0.00 0.00 5.10
123 124 3.108289 CTGGACACACGCTCGCAG 61.108 66.667 0.00 0.00 0.00 5.18
124 125 3.848347 CTGGACACACGCTCGCAGT 62.848 63.158 0.00 0.00 0.00 4.40
125 126 3.106407 GGACACACGCTCGCAGTC 61.106 66.667 0.00 0.00 0.00 3.51
126 127 3.461982 GACACACGCTCGCAGTCG 61.462 66.667 0.00 0.00 0.00 4.18
134 135 4.717629 CTCGCAGTCGCCGTGGAA 62.718 66.667 0.00 0.00 35.26 3.53
135 136 4.287781 TCGCAGTCGCCGTGGAAA 62.288 61.111 0.00 0.00 35.26 3.13
136 137 3.777925 CGCAGTCGCCGTGGAAAG 61.778 66.667 0.00 0.00 33.11 2.62
195 196 4.742201 CTCCACGTGGCCCTGACG 62.742 72.222 30.25 12.19 42.62 4.35
198 199 4.742201 CACGTGGCCCTGACGGAG 62.742 72.222 17.33 6.72 41.21 4.63
199 200 4.988716 ACGTGGCCCTGACGGAGA 62.989 66.667 17.33 0.00 41.21 3.71
200 201 4.436998 CGTGGCCCTGACGGAGAC 62.437 72.222 0.00 0.00 33.08 3.36
224 225 2.042842 ACCCATCCACATCCACATCAAA 59.957 45.455 0.00 0.00 0.00 2.69
227 228 4.525996 CCATCCACATCCACATCAAACTA 58.474 43.478 0.00 0.00 0.00 2.24
229 230 5.430886 CATCCACATCCACATCAAACTAGA 58.569 41.667 0.00 0.00 0.00 2.43
230 231 5.698741 TCCACATCCACATCAAACTAGAT 57.301 39.130 0.00 0.00 0.00 1.98
234 235 6.051074 CACATCCACATCAAACTAGATAGCA 58.949 40.000 0.00 0.00 0.00 3.49
235 236 6.018425 CACATCCACATCAAACTAGATAGCAC 60.018 42.308 0.00 0.00 0.00 4.40
236 237 5.939764 TCCACATCAAACTAGATAGCACT 57.060 39.130 0.00 0.00 0.00 4.40
237 238 5.907207 TCCACATCAAACTAGATAGCACTC 58.093 41.667 0.00 0.00 0.00 3.51
238 239 5.053145 CCACATCAAACTAGATAGCACTCC 58.947 45.833 0.00 0.00 0.00 3.85
239 240 5.163364 CCACATCAAACTAGATAGCACTCCT 60.163 44.000 0.00 0.00 0.00 3.69
240 241 5.982516 CACATCAAACTAGATAGCACTCCTC 59.017 44.000 0.00 0.00 0.00 3.71
241 242 5.069781 ACATCAAACTAGATAGCACTCCTCC 59.930 44.000 0.00 0.00 0.00 4.30
247 248 1.217689 AGATAGCACTCCTCCTCAGCT 59.782 52.381 0.00 0.00 39.22 4.24
248 249 1.613437 GATAGCACTCCTCCTCAGCTC 59.387 57.143 0.00 0.00 36.80 4.09
331 334 3.113979 CGTACGTGGCCGGGAAAC 61.114 66.667 7.22 0.00 38.78 2.78
332 335 2.030862 GTACGTGGCCGGGAAACA 59.969 61.111 2.18 0.00 38.78 2.83
333 336 2.030862 TACGTGGCCGGGAAACAC 59.969 61.111 2.18 2.39 38.78 3.32
334 337 2.509651 TACGTGGCCGGGAAACACT 61.510 57.895 2.18 0.00 38.78 3.55
335 338 2.438951 TACGTGGCCGGGAAACACTC 62.439 60.000 2.18 0.00 38.78 3.51
336 339 2.671963 GTGGCCGGGAAACACTCC 60.672 66.667 2.18 0.00 44.54 3.85
345 348 1.291132 GGAAACACTCCTAGCATCGC 58.709 55.000 0.00 0.00 41.61 4.58
370 378 3.656045 CCGCCACCACCACGAAAC 61.656 66.667 0.00 0.00 0.00 2.78
372 380 2.604174 CGCCACCACCACGAAACTC 61.604 63.158 0.00 0.00 0.00 3.01
400 411 2.341176 GGACGGCACTTGGTACGT 59.659 61.111 0.00 0.00 42.88 3.57
401 412 1.586028 GGACGGCACTTGGTACGTA 59.414 57.895 0.00 0.00 39.95 3.57
402 413 0.733909 GGACGGCACTTGGTACGTAC 60.734 60.000 17.56 17.56 39.95 3.67
403 414 0.242017 GACGGCACTTGGTACGTACT 59.758 55.000 24.07 2.40 39.95 2.73
443 454 1.281925 CCTGCCTCACCCCTACCAAT 61.282 60.000 0.00 0.00 0.00 3.16
445 456 0.623723 TGCCTCACCCCTACCAATTC 59.376 55.000 0.00 0.00 0.00 2.17
446 457 0.919710 GCCTCACCCCTACCAATTCT 59.080 55.000 0.00 0.00 0.00 2.40
447 458 1.134068 GCCTCACCCCTACCAATTCTC 60.134 57.143 0.00 0.00 0.00 2.87
467 478 2.693074 TCCCAAAAAGGTCTGAACTTGC 59.307 45.455 9.03 0.00 34.66 4.01
586 599 2.094338 GGTCGTATCCAAGACTTCCGTT 60.094 50.000 0.00 0.00 37.52 4.44
587 600 2.921754 GTCGTATCCAAGACTTCCGTTG 59.078 50.000 0.00 0.00 34.74 4.10
588 601 1.659098 CGTATCCAAGACTTCCGTTGC 59.341 52.381 0.00 0.00 0.00 4.17
589 602 2.007608 GTATCCAAGACTTCCGTTGCC 58.992 52.381 0.00 0.00 0.00 4.52
689 705 2.363359 GGACCAATGGAGATTTGGCATC 59.637 50.000 6.16 0.00 46.21 3.91
693 709 0.935942 ATGGAGATTTGGCATCCCCA 59.064 50.000 2.54 0.00 43.51 4.96
711 727 2.300967 ATCGCCTTGGCTTCTCCCA 61.301 57.895 10.12 0.00 0.00 4.37
725 746 4.464008 CTTCTCCCAGGCTGCAATAATAA 58.536 43.478 9.56 0.00 0.00 1.40
726 747 4.729552 TCTCCCAGGCTGCAATAATAAT 57.270 40.909 9.56 0.00 0.00 1.28
727 748 5.841267 TCTCCCAGGCTGCAATAATAATA 57.159 39.130 9.56 0.00 0.00 0.98
768 799 2.203437 GACCCAACCCACCACCAC 60.203 66.667 0.00 0.00 0.00 4.16
769 800 3.024356 ACCCAACCCACCACCACA 61.024 61.111 0.00 0.00 0.00 4.17
770 801 2.520741 CCCAACCCACCACCACAC 60.521 66.667 0.00 0.00 0.00 3.82
771 802 2.520741 CCAACCCACCACCACACC 60.521 66.667 0.00 0.00 0.00 4.16
772 803 2.277072 CAACCCACCACCACACCA 59.723 61.111 0.00 0.00 0.00 4.17
791 826 1.152599 CACCACATCACCACCCCAA 59.847 57.895 0.00 0.00 0.00 4.12
792 827 0.895100 CACCACATCACCACCCCAAG 60.895 60.000 0.00 0.00 0.00 3.61
793 828 1.304381 CCACATCACCACCCCAAGG 60.304 63.158 0.00 0.00 40.04 3.61
835 875 1.076632 TCGCTCTCTTCCTCCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
837 877 1.313129 GCTCTCTTCCTCCCTCCCT 59.687 63.158 0.00 0.00 0.00 4.20
838 878 0.759060 GCTCTCTTCCTCCCTCCCTC 60.759 65.000 0.00 0.00 0.00 4.30
839 879 0.467290 CTCTCTTCCTCCCTCCCTCG 60.467 65.000 0.00 0.00 0.00 4.63
840 880 2.042843 TCTTCCTCCCTCCCTCGC 60.043 66.667 0.00 0.00 0.00 5.03
842 882 3.684628 TTCCTCCCTCCCTCGCCT 61.685 66.667 0.00 0.00 0.00 5.52
843 883 3.680920 TTCCTCCCTCCCTCGCCTC 62.681 68.421 0.00 0.00 0.00 4.70
844 884 4.465446 CCTCCCTCCCTCGCCTCA 62.465 72.222 0.00 0.00 0.00 3.86
845 885 3.151022 CTCCCTCCCTCGCCTCAC 61.151 72.222 0.00 0.00 0.00 3.51
846 886 4.779733 TCCCTCCCTCGCCTCACC 62.780 72.222 0.00 0.00 0.00 4.02
847 887 4.787280 CCCTCCCTCGCCTCACCT 62.787 72.222 0.00 0.00 0.00 4.00
848 888 3.151022 CCTCCCTCGCCTCACCTC 61.151 72.222 0.00 0.00 0.00 3.85
849 889 2.363018 CTCCCTCGCCTCACCTCA 60.363 66.667 0.00 0.00 0.00 3.86
850 890 2.363018 TCCCTCGCCTCACCTCAG 60.363 66.667 0.00 0.00 0.00 3.35
851 891 4.154347 CCCTCGCCTCACCTCAGC 62.154 72.222 0.00 0.00 0.00 4.26
961 1001 4.657824 CGCCGTCGACCAGGTTGT 62.658 66.667 10.58 0.00 38.10 3.32
963 1003 1.005867 GCCGTCGACCAGGTTGTTA 60.006 57.895 10.58 0.00 0.00 2.41
987 1035 3.723922 ACTTAACCCGCCCGCCAT 61.724 61.111 0.00 0.00 0.00 4.40
1003 1051 2.104859 CATCGCCAGCCAGTGAGTG 61.105 63.158 0.00 0.00 0.00 3.51
1020 1071 3.574396 TGAGTGCTACTACTTCAACTGCT 59.426 43.478 0.00 0.00 0.00 4.24
1024 1075 2.263077 CTACTACTTCAACTGCTGCGG 58.737 52.381 6.98 6.98 0.00 5.69
1026 1077 1.003839 TACTTCAACTGCTGCGGGG 60.004 57.895 13.87 4.75 0.00 5.73
1027 1078 2.463589 TACTTCAACTGCTGCGGGGG 62.464 60.000 13.87 4.37 0.00 5.40
1192 1249 2.202810 GTGCTCGCCTACCTGCTC 60.203 66.667 0.00 0.00 0.00 4.26
1195 1252 2.124693 GCTCGCCTACCTGCTCTCT 61.125 63.158 0.00 0.00 0.00 3.10
1198 1255 1.754621 CGCCTACCTGCTCTCTGGA 60.755 63.158 0.00 0.00 35.51 3.86
1411 1480 4.372999 GGGGCAGCCAAAGGAGCT 62.373 66.667 15.19 0.00 42.70 4.09
1549 1618 2.359850 GCGGATGACCACCTGCAA 60.360 61.111 0.00 0.00 35.59 4.08
1757 1826 4.087892 CCGCCTGGACCTGACCTG 62.088 72.222 0.00 0.00 37.49 4.00
1758 1827 2.997315 CGCCTGGACCTGACCTGA 60.997 66.667 0.00 0.00 0.00 3.86
1759 1828 2.665603 GCCTGGACCTGACCTGAC 59.334 66.667 0.00 0.00 0.00 3.51
1760 1829 2.960688 GCCTGGACCTGACCTGACC 61.961 68.421 0.00 0.00 0.00 4.02
1768 1837 2.284625 TGACCTGACCGGCATCCT 60.285 61.111 0.00 0.00 35.61 3.24
1790 1865 3.554692 CGCCGCCGCTAGAACTTG 61.555 66.667 0.00 0.00 0.00 3.16
1806 1881 4.645588 AGAACTTGTCGTAGATTAGGGAGG 59.354 45.833 0.00 0.00 40.67 4.30
1808 1883 4.607239 ACTTGTCGTAGATTAGGGAGGAA 58.393 43.478 0.00 0.00 40.67 3.36
1817 1899 2.552093 TTAGGGAGGAAGGAGACCAG 57.448 55.000 0.00 0.00 0.00 4.00
1857 1984 4.948621 ACCAGTAGTAGTACTAGCAGTTGG 59.051 45.833 10.38 13.97 37.40 3.77
1858 1985 4.338682 CCAGTAGTAGTACTAGCAGTTGGG 59.661 50.000 10.38 1.56 37.40 4.12
1859 1986 4.948621 CAGTAGTAGTACTAGCAGTTGGGT 59.051 45.833 10.38 0.00 37.40 4.51
1860 1987 5.066246 CAGTAGTAGTACTAGCAGTTGGGTC 59.934 48.000 10.38 0.00 37.40 4.46
1884 2011 1.174712 TGTCCAAGCAAGCAAGAGCC 61.175 55.000 0.00 0.00 43.56 4.70
1885 2012 1.968017 TCCAAGCAAGCAAGAGCCG 60.968 57.895 0.00 0.00 43.56 5.52
1932 2075 1.392853 GCAACTCTGATGAACGAGCAG 59.607 52.381 0.00 0.00 39.65 4.24
1960 2103 1.847798 CTCCGGGTGGGGATTGTGAA 61.848 60.000 0.00 0.00 38.40 3.18
1964 2107 0.323451 GGGTGGGGATTGTGAAGGTC 60.323 60.000 0.00 0.00 0.00 3.85
1999 2142 2.693864 CCCCACATCCAGGCCTCT 60.694 66.667 0.00 0.00 0.00 3.69
2051 2194 5.365025 TCAACAAGAAACATTCCCCATTTCA 59.635 36.000 0.00 0.00 35.26 2.69
2060 2207 4.528206 ACATTCCCCATTTCACCTTTCTTC 59.472 41.667 0.00 0.00 0.00 2.87
2073 2220 1.740025 CTTTCTTCCCTCGCCATTGAC 59.260 52.381 0.00 0.00 0.00 3.18
2283 2443 3.787001 AGCCCTCGCTAACCCTGC 61.787 66.667 0.00 0.00 46.08 4.85
2289 2453 3.083997 CGCTAACCCTGCTCCCCT 61.084 66.667 0.00 0.00 0.00 4.79
2323 2487 1.603455 ATGGTGGGCTTTGGTGACG 60.603 57.895 0.00 0.00 0.00 4.35
2324 2488 2.983592 GGTGGGCTTTGGTGACGG 60.984 66.667 0.00 0.00 0.00 4.79
2337 2501 0.462047 GTGACGGACACCCATCCATC 60.462 60.000 0.00 0.00 43.05 3.51
2338 2502 0.617535 TGACGGACACCCATCCATCT 60.618 55.000 0.00 0.00 38.87 2.90
2344 2509 0.695803 ACACCCATCCATCTCCCCTC 60.696 60.000 0.00 0.00 0.00 4.30
2361 2526 2.291365 CCTCAACGATGGAATCATGCA 58.709 47.619 0.00 0.00 45.97 3.96
2363 2528 3.058432 CCTCAACGATGGAATCATGCATC 60.058 47.826 0.00 0.79 45.97 3.91
2397 2562 9.866936 CTACTCGTAGTATCAAGTACAATCTTC 57.133 37.037 0.00 0.00 35.67 2.87
2400 2565 7.404985 TCGTAGTATCAAGTACAATCTTCGTC 58.595 38.462 0.00 0.00 35.67 4.20
2406 2571 3.114693 AGTACAATCTTCGTCGTCGTC 57.885 47.619 1.33 0.00 38.33 4.20
2419 2584 1.321148 TCGTCGTCGTTGTTGTTGTTC 59.679 47.619 1.33 0.00 38.33 3.18
2434 2599 6.252441 TGTTGTTGTTCGTTGTTGATTGATTC 59.748 34.615 0.00 0.00 0.00 2.52
2441 2606 5.389778 TCGTTGTTGATTGATTCGATTTGG 58.610 37.500 0.00 0.00 0.00 3.28
2442 2607 5.049060 TCGTTGTTGATTGATTCGATTTGGT 60.049 36.000 0.00 0.00 0.00 3.67
2443 2608 6.147985 TCGTTGTTGATTGATTCGATTTGGTA 59.852 34.615 0.00 0.00 0.00 3.25
2444 2609 6.799441 CGTTGTTGATTGATTCGATTTGGTAA 59.201 34.615 0.00 0.00 0.00 2.85
2446 2611 6.321717 TGTTGATTGATTCGATTTGGTAAGC 58.678 36.000 0.00 0.00 0.00 3.09
2447 2612 5.155509 TGATTGATTCGATTTGGTAAGCG 57.844 39.130 0.00 0.00 44.08 4.68
2464 2629 1.515952 CGAGAGCTGGAGCAGTTCG 60.516 63.158 0.00 3.59 44.44 3.95
2516 2694 7.130303 AGAGCAAATAATCATCACATCATCG 57.870 36.000 0.00 0.00 0.00 3.84
2517 2695 6.148976 AGAGCAAATAATCATCACATCATCGG 59.851 38.462 0.00 0.00 0.00 4.18
2520 2698 5.874895 AATAATCATCACATCATCGGCAG 57.125 39.130 0.00 0.00 0.00 4.85
2522 2700 0.178533 TCATCACATCATCGGCAGCA 59.821 50.000 0.00 0.00 0.00 4.41
2525 2703 0.321475 TCACATCATCGGCAGCAACA 60.321 50.000 0.00 0.00 0.00 3.33
2526 2704 0.522626 CACATCATCGGCAGCAACAA 59.477 50.000 0.00 0.00 0.00 2.83
2528 2706 0.522626 CATCATCGGCAGCAACAACA 59.477 50.000 0.00 0.00 0.00 3.33
2592 2851 9.752961 TTTTTGAAACAGGCCTTTTATTACTAC 57.247 29.630 0.00 0.00 0.00 2.73
2595 2854 9.444600 TTGAAACAGGCCTTTTATTACTACTAG 57.555 33.333 0.00 0.00 0.00 2.57
2619 2878 7.697691 AGTAGTATTCCTTTGATTTGATTGCG 58.302 34.615 0.00 0.00 0.00 4.85
2633 2898 5.446143 TTGATTGCGTTTTGGTGTATTCT 57.554 34.783 0.00 0.00 0.00 2.40
2637 2902 7.247728 TGATTGCGTTTTGGTGTATTCTATTC 58.752 34.615 0.00 0.00 0.00 1.75
2648 2913 5.239525 GGTGTATTCTATTCTGGCATTGGAC 59.760 44.000 0.00 0.00 0.00 4.02
2663 2928 0.960364 TGGACGAGGCAAAAGGATGC 60.960 55.000 0.00 0.00 45.67 3.91
2671 2936 2.927553 GCAAAAGGATGCACTGGTAG 57.072 50.000 0.00 0.00 45.70 3.18
2672 2937 2.436417 GCAAAAGGATGCACTGGTAGA 58.564 47.619 0.00 0.00 45.70 2.59
2673 2938 2.421424 GCAAAAGGATGCACTGGTAGAG 59.579 50.000 0.00 0.00 45.70 2.43
2683 2948 7.291182 AGGATGCACTGGTAGAGTAGATATTTT 59.709 37.037 0.00 0.00 31.73 1.82
2692 2957 7.011382 GGTAGAGTAGATATTTTCTCCTCCCA 58.989 42.308 0.00 0.00 37.99 4.37
2729 2994 6.769076 GGTACTTACCGAAAAGAATTGCTAC 58.231 40.000 4.04 0.00 36.50 3.58
2730 2995 6.592994 GGTACTTACCGAAAAGAATTGCTACT 59.407 38.462 4.04 0.00 36.50 2.57
2731 2996 6.723131 ACTTACCGAAAAGAATTGCTACTC 57.277 37.500 4.04 0.00 0.00 2.59
2732 2997 5.642491 ACTTACCGAAAAGAATTGCTACTCC 59.358 40.000 4.04 0.00 0.00 3.85
2734 2999 4.003648 ACCGAAAAGAATTGCTACTCCTG 58.996 43.478 0.00 0.00 0.00 3.86
2738 3003 5.006165 CGAAAAGAATTGCTACTCCTGCTAG 59.994 44.000 0.00 0.00 0.00 3.42
2765 3036 1.092348 GTGAAAGTTATCCGTGGGCC 58.908 55.000 0.00 0.00 0.00 5.80
2779 3050 4.656117 GGCCGGGCGGTTTGTTTG 62.656 66.667 14.21 0.00 37.65 2.93
2780 3051 3.906879 GCCGGGCGGTTTGTTTGT 61.907 61.111 1.81 0.00 37.65 2.83
2781 3052 2.809010 CCGGGCGGTTTGTTTGTT 59.191 55.556 0.00 0.00 0.00 2.83
2782 3053 1.142097 CCGGGCGGTTTGTTTGTTT 59.858 52.632 0.00 0.00 0.00 2.83
2805 3076 1.004440 GTTTCGCTCCCACTCTGCT 60.004 57.895 0.00 0.00 0.00 4.24
2806 3077 1.004560 TTTCGCTCCCACTCTGCTG 60.005 57.895 0.00 0.00 0.00 4.41
2807 3078 3.596066 TTCGCTCCCACTCTGCTGC 62.596 63.158 0.00 0.00 0.00 5.25
2832 3152 1.087771 CGGCGGGGTACAAAGCTTAG 61.088 60.000 0.00 0.00 0.00 2.18
2833 3153 0.035725 GGCGGGGTACAAAGCTTAGT 60.036 55.000 0.00 0.00 0.00 2.24
2850 3170 9.462606 AAAGCTTAGTGCACTTTAATAACCTAT 57.537 29.630 27.06 0.00 45.94 2.57
2996 3342 0.593518 TGTTGCAACGAAATGGCACG 60.594 50.000 23.79 0.00 37.26 5.34
3073 3422 3.339547 GCAGGTAGCCTTTGGAACA 57.660 52.632 0.00 0.00 37.23 3.18
3075 3424 1.168714 CAGGTAGCCTTTGGAACAGC 58.831 55.000 0.00 0.00 42.39 4.40
3076 3425 1.068121 AGGTAGCCTTTGGAACAGCT 58.932 50.000 0.00 0.00 42.39 4.24
3078 3427 0.523519 GTAGCCTTTGGAACAGCTGC 59.476 55.000 15.27 0.00 42.39 5.25
3079 3428 0.609131 TAGCCTTTGGAACAGCTGCC 60.609 55.000 15.27 8.68 42.39 4.85
3080 3429 2.202395 GCCTTTGGAACAGCTGCCA 61.202 57.895 15.27 11.61 42.39 4.92
3082 3431 0.032540 CCTTTGGAACAGCTGCCAAC 59.967 55.000 21.30 8.07 43.40 3.77
3083 3432 0.746063 CTTTGGAACAGCTGCCAACA 59.254 50.000 21.30 10.39 43.40 3.33
3084 3433 1.136695 CTTTGGAACAGCTGCCAACAA 59.863 47.619 21.30 15.07 43.40 2.83
3085 3434 0.746063 TTGGAACAGCTGCCAACAAG 59.254 50.000 18.61 0.00 42.39 3.16
3087 3436 1.109323 GGAACAGCTGCCAACAAGGT 61.109 55.000 15.27 0.00 40.61 3.50
3089 3438 0.746659 AACAGCTGCCAACAAGGTTC 59.253 50.000 15.27 0.00 40.61 3.62
3091 3440 0.963962 CAGCTGCCAACAAGGTTCAT 59.036 50.000 0.00 0.00 40.61 2.57
3093 3442 0.961019 GCTGCCAACAAGGTTCATGA 59.039 50.000 0.00 0.00 40.61 3.07
3094 3443 1.547372 GCTGCCAACAAGGTTCATGAT 59.453 47.619 0.00 0.00 40.61 2.45
3096 3445 1.273048 TGCCAACAAGGTTCATGATGC 59.727 47.619 0.00 0.00 40.61 3.91
3097 3446 1.404583 GCCAACAAGGTTCATGATGCC 60.405 52.381 0.00 2.18 40.61 4.40
3098 3447 1.205417 CCAACAAGGTTCATGATGCCC 59.795 52.381 11.80 5.98 0.00 5.36
3099 3448 1.894466 CAACAAGGTTCATGATGCCCA 59.106 47.619 11.80 0.00 0.00 5.36
3100 3449 1.549203 ACAAGGTTCATGATGCCCAC 58.451 50.000 11.80 0.20 0.00 4.61
3101 3450 0.452987 CAAGGTTCATGATGCCCACG 59.547 55.000 11.80 0.00 0.00 4.94
3102 3451 1.315257 AAGGTTCATGATGCCCACGC 61.315 55.000 11.80 0.00 0.00 5.34
3104 3453 0.463654 GGTTCATGATGCCCACGCTA 60.464 55.000 0.00 0.00 35.36 4.26
3105 3454 0.657840 GTTCATGATGCCCACGCTAC 59.342 55.000 0.00 0.00 35.36 3.58
3106 3455 0.251634 TTCATGATGCCCACGCTACA 59.748 50.000 0.00 0.00 35.36 2.74
3107 3456 0.461870 TCATGATGCCCACGCTACAC 60.462 55.000 0.00 0.00 35.36 2.90
3108 3457 0.462581 CATGATGCCCACGCTACACT 60.463 55.000 0.00 0.00 35.36 3.55
3109 3458 1.119684 ATGATGCCCACGCTACACTA 58.880 50.000 0.00 0.00 35.36 2.74
3110 3459 0.459899 TGATGCCCACGCTACACTAG 59.540 55.000 0.00 0.00 35.36 2.57
3119 3468 3.551259 GCTACACTAGCCTTGCCAA 57.449 52.632 0.00 0.00 45.95 4.52
3120 3469 1.821216 GCTACACTAGCCTTGCCAAA 58.179 50.000 0.00 0.00 45.95 3.28
3121 3470 2.159382 GCTACACTAGCCTTGCCAAAA 58.841 47.619 0.00 0.00 45.95 2.44
3122 3471 2.755103 GCTACACTAGCCTTGCCAAAAT 59.245 45.455 0.00 0.00 45.95 1.82
3124 3473 2.597455 ACACTAGCCTTGCCAAAATGT 58.403 42.857 0.00 0.00 0.00 2.71
3125 3474 2.965147 ACACTAGCCTTGCCAAAATGTT 59.035 40.909 0.00 0.00 0.00 2.71
3162 3511 7.718272 TTTTTCAGAGAAAATTCATGGCTTG 57.282 32.000 5.83 0.00 0.00 4.01
3163 3512 5.395682 TTCAGAGAAAATTCATGGCTTGG 57.604 39.130 0.09 0.00 0.00 3.61
3164 3513 3.194116 TCAGAGAAAATTCATGGCTTGGC 59.806 43.478 0.09 0.00 0.00 4.52
3165 3514 3.056393 CAGAGAAAATTCATGGCTTGGCA 60.056 43.478 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.850982 CGCGCAAAATTTTCTAGATTACTGTAT 59.149 33.333 8.75 0.00 0.00 2.29
9 10 7.063662 TCGCGCAAAATTTTCTAGATTACTGTA 59.936 33.333 8.75 0.00 0.00 2.74
10 11 6.021596 CGCGCAAAATTTTCTAGATTACTGT 58.978 36.000 8.75 0.00 0.00 3.55
11 12 6.247903 TCGCGCAAAATTTTCTAGATTACTG 58.752 36.000 8.75 0.00 0.00 2.74
12 13 6.417191 TCGCGCAAAATTTTCTAGATTACT 57.583 33.333 8.75 0.00 0.00 2.24
13 14 7.487180 TTTCGCGCAAAATTTTCTAGATTAC 57.513 32.000 8.75 0.00 0.00 1.89
14 15 7.163520 CGATTTCGCGCAAAATTTTCTAGATTA 59.836 33.333 7.89 0.00 0.00 1.75
15 16 6.021468 CGATTTCGCGCAAAATTTTCTAGATT 60.021 34.615 7.89 0.00 0.00 2.40
16 17 5.452302 CGATTTCGCGCAAAATTTTCTAGAT 59.548 36.000 7.89 0.00 0.00 1.98
17 18 4.786068 CGATTTCGCGCAAAATTTTCTAGA 59.214 37.500 7.89 0.00 0.00 2.43
18 19 5.029502 CGATTTCGCGCAAAATTTTCTAG 57.970 39.130 7.89 0.00 0.00 2.43
20 21 3.952174 CGATTTCGCGCAAAATTTTCT 57.048 38.095 7.89 0.00 0.00 2.52
33 34 1.369091 CTTGTGGAGGGGCGATTTCG 61.369 60.000 0.00 0.00 43.27 3.46
34 35 1.032114 CCTTGTGGAGGGGCGATTTC 61.032 60.000 0.00 0.00 42.26 2.17
35 36 1.000896 CCTTGTGGAGGGGCGATTT 60.001 57.895 0.00 0.00 42.26 2.17
36 37 2.677228 CCTTGTGGAGGGGCGATT 59.323 61.111 0.00 0.00 42.26 3.34
53 54 2.159071 GGTTGGTTGGTTGGTGGTAAAC 60.159 50.000 0.00 0.00 0.00 2.01
54 55 2.108970 GGTTGGTTGGTTGGTGGTAAA 58.891 47.619 0.00 0.00 0.00 2.01
55 56 1.688627 GGGTTGGTTGGTTGGTGGTAA 60.689 52.381 0.00 0.00 0.00 2.85
56 57 0.106116 GGGTTGGTTGGTTGGTGGTA 60.106 55.000 0.00 0.00 0.00 3.25
57 58 1.382009 GGGTTGGTTGGTTGGTGGT 60.382 57.895 0.00 0.00 0.00 4.16
58 59 2.137528 GGGGTTGGTTGGTTGGTGG 61.138 63.158 0.00 0.00 0.00 4.61
59 60 1.075600 AGGGGTTGGTTGGTTGGTG 60.076 57.895 0.00 0.00 0.00 4.17
60 61 1.075600 CAGGGGTTGGTTGGTTGGT 60.076 57.895 0.00 0.00 0.00 3.67
61 62 0.689412 AACAGGGGTTGGTTGGTTGG 60.689 55.000 0.00 0.00 35.46 3.77
62 63 0.750249 GAACAGGGGTTGGTTGGTTG 59.250 55.000 0.00 0.00 37.36 3.77
63 64 0.753848 CGAACAGGGGTTGGTTGGTT 60.754 55.000 0.00 0.00 37.36 3.67
64 65 1.152839 CGAACAGGGGTTGGTTGGT 60.153 57.895 0.00 0.00 37.36 3.67
65 66 1.152839 ACGAACAGGGGTTGGTTGG 60.153 57.895 0.00 0.00 42.36 3.77
66 67 1.170290 GGACGAACAGGGGTTGGTTG 61.170 60.000 0.00 0.00 44.56 3.77
67 68 1.149854 GGACGAACAGGGGTTGGTT 59.850 57.895 0.00 0.00 44.56 3.67
68 69 1.765597 GAGGACGAACAGGGGTTGGT 61.766 60.000 0.00 0.00 46.76 3.67
69 70 1.003718 GAGGACGAACAGGGGTTGG 60.004 63.158 0.00 0.00 37.36 3.77
70 71 0.107831 TTGAGGACGAACAGGGGTTG 59.892 55.000 0.00 0.00 37.36 3.77
71 72 0.108019 GTTGAGGACGAACAGGGGTT 59.892 55.000 0.00 0.00 40.76 4.11
72 73 1.052124 TGTTGAGGACGAACAGGGGT 61.052 55.000 0.00 0.00 0.00 4.95
73 74 0.324943 ATGTTGAGGACGAACAGGGG 59.675 55.000 0.00 0.00 36.77 4.79
74 75 1.676014 GGATGTTGAGGACGAACAGGG 60.676 57.143 0.00 0.00 36.77 4.45
75 76 1.276421 AGGATGTTGAGGACGAACAGG 59.724 52.381 0.00 0.00 36.77 4.00
76 77 2.751166 AGGATGTTGAGGACGAACAG 57.249 50.000 0.00 0.00 36.77 3.16
77 78 3.138304 CAAAGGATGTTGAGGACGAACA 58.862 45.455 0.00 0.00 37.70 3.18
78 79 2.484264 CCAAAGGATGTTGAGGACGAAC 59.516 50.000 0.00 0.00 0.00 3.95
79 80 2.552155 CCCAAAGGATGTTGAGGACGAA 60.552 50.000 0.00 0.00 33.47 3.85
80 81 1.003118 CCCAAAGGATGTTGAGGACGA 59.997 52.381 0.00 0.00 33.47 4.20
81 82 1.453155 CCCAAAGGATGTTGAGGACG 58.547 55.000 0.00 0.00 33.47 4.79
82 83 1.177401 GCCCAAAGGATGTTGAGGAC 58.823 55.000 0.00 0.00 33.47 3.85
83 84 0.039618 GGCCCAAAGGATGTTGAGGA 59.960 55.000 0.00 0.00 33.47 3.71
84 85 1.315257 CGGCCCAAAGGATGTTGAGG 61.315 60.000 0.00 0.00 33.47 3.86
85 86 0.322456 TCGGCCCAAAGGATGTTGAG 60.322 55.000 0.00 0.00 33.47 3.02
86 87 0.608035 GTCGGCCCAAAGGATGTTGA 60.608 55.000 0.00 0.00 33.47 3.18
87 88 1.595093 GGTCGGCCCAAAGGATGTTG 61.595 60.000 0.00 0.00 33.47 3.33
88 89 1.304134 GGTCGGCCCAAAGGATGTT 60.304 57.895 0.00 0.00 33.47 2.71
89 90 2.231380 AGGTCGGCCCAAAGGATGT 61.231 57.895 0.08 0.00 34.66 3.06
90 91 1.750399 CAGGTCGGCCCAAAGGATG 60.750 63.158 0.08 0.00 34.66 3.51
91 92 2.677228 CAGGTCGGCCCAAAGGAT 59.323 61.111 0.08 0.00 34.66 3.24
92 93 3.646715 CCAGGTCGGCCCAAAGGA 61.647 66.667 0.08 0.00 34.66 3.36
93 94 3.646715 TCCAGGTCGGCCCAAAGG 61.647 66.667 0.08 0.00 34.66 3.11
94 95 2.359975 GTCCAGGTCGGCCCAAAG 60.360 66.667 0.08 0.00 34.66 2.77
95 96 3.172106 TGTCCAGGTCGGCCCAAA 61.172 61.111 0.08 0.00 34.66 3.28
96 97 3.948719 GTGTCCAGGTCGGCCCAA 61.949 66.667 0.08 0.00 34.66 4.12
98 99 4.699522 GTGTGTCCAGGTCGGCCC 62.700 72.222 0.08 0.00 34.57 5.80
101 102 3.916392 GAGCGTGTGTCCAGGTCGG 62.916 68.421 0.00 0.00 0.00 4.79
102 103 2.430921 GAGCGTGTGTCCAGGTCG 60.431 66.667 0.00 0.00 0.00 4.79
103 104 2.430921 CGAGCGTGTGTCCAGGTC 60.431 66.667 0.00 0.00 0.00 3.85
104 105 4.664677 GCGAGCGTGTGTCCAGGT 62.665 66.667 0.00 0.00 0.00 4.00
105 106 4.662961 TGCGAGCGTGTGTCCAGG 62.663 66.667 0.00 0.00 0.00 4.45
106 107 3.108289 CTGCGAGCGTGTGTCCAG 61.108 66.667 0.00 0.00 0.00 3.86
107 108 3.841379 GACTGCGAGCGTGTGTCCA 62.841 63.158 0.00 0.00 0.00 4.02
108 109 3.106407 GACTGCGAGCGTGTGTCC 61.106 66.667 0.00 0.00 0.00 4.02
109 110 3.461982 CGACTGCGAGCGTGTGTC 61.462 66.667 0.00 0.00 40.82 3.67
117 118 4.717629 TTCCACGGCGACTGCGAG 62.718 66.667 16.62 0.00 44.10 5.03
118 119 4.287781 TTTCCACGGCGACTGCGA 62.288 61.111 16.62 0.00 44.10 5.10
119 120 3.777925 CTTTCCACGGCGACTGCG 61.778 66.667 16.62 0.00 44.10 5.18
120 121 3.423154 CCTTTCCACGGCGACTGC 61.423 66.667 16.62 0.00 41.71 4.40
121 122 0.882927 TTTCCTTTCCACGGCGACTG 60.883 55.000 16.62 1.15 0.00 3.51
122 123 0.602905 CTTTCCTTTCCACGGCGACT 60.603 55.000 16.62 0.00 0.00 4.18
123 124 1.574702 CCTTTCCTTTCCACGGCGAC 61.575 60.000 16.62 0.00 0.00 5.19
124 125 1.302192 CCTTTCCTTTCCACGGCGA 60.302 57.895 16.62 0.00 0.00 5.54
125 126 0.887387 TTCCTTTCCTTTCCACGGCG 60.887 55.000 4.80 4.80 0.00 6.46
126 127 0.596577 GTTCCTTTCCTTTCCACGGC 59.403 55.000 0.00 0.00 0.00 5.68
127 128 0.872388 CGTTCCTTTCCTTTCCACGG 59.128 55.000 0.00 0.00 0.00 4.94
128 129 0.872388 CCGTTCCTTTCCTTTCCACG 59.128 55.000 0.00 0.00 0.00 4.94
129 130 1.244816 CCCGTTCCTTTCCTTTCCAC 58.755 55.000 0.00 0.00 0.00 4.02
130 131 0.538746 GCCCGTTCCTTTCCTTTCCA 60.539 55.000 0.00 0.00 0.00 3.53
131 132 1.248785 GGCCCGTTCCTTTCCTTTCC 61.249 60.000 0.00 0.00 0.00 3.13
132 133 0.538746 TGGCCCGTTCCTTTCCTTTC 60.539 55.000 0.00 0.00 0.00 2.62
133 134 0.826256 GTGGCCCGTTCCTTTCCTTT 60.826 55.000 0.00 0.00 0.00 3.11
134 135 1.228459 GTGGCCCGTTCCTTTCCTT 60.228 57.895 0.00 0.00 0.00 3.36
135 136 2.434774 GTGGCCCGTTCCTTTCCT 59.565 61.111 0.00 0.00 0.00 3.36
136 137 2.675423 GGTGGCCCGTTCCTTTCC 60.675 66.667 0.00 0.00 0.00 3.13
187 188 4.131088 GTCCGTCTCCGTCAGGGC 62.131 72.222 0.00 0.00 38.33 5.19
192 193 2.783288 GGATGGGTCCGTCTCCGTC 61.783 68.421 8.89 0.00 38.12 4.79
193 194 2.758737 GGATGGGTCCGTCTCCGT 60.759 66.667 8.89 0.00 34.13 4.69
201 202 0.552848 ATGTGGATGTGGATGGGTCC 59.447 55.000 0.00 0.00 45.31 4.46
202 203 1.212688 TGATGTGGATGTGGATGGGTC 59.787 52.381 0.00 0.00 0.00 4.46
224 225 3.750599 GCTGAGGAGGAGTGCTATCTAGT 60.751 52.174 0.00 0.00 0.00 2.57
227 228 1.217689 AGCTGAGGAGGAGTGCTATCT 59.782 52.381 0.00 0.00 31.71 1.98
229 230 1.063341 TGAGCTGAGGAGGAGTGCTAT 60.063 52.381 0.00 0.00 33.83 2.97
230 231 0.332972 TGAGCTGAGGAGGAGTGCTA 59.667 55.000 0.00 0.00 33.83 3.49
234 235 1.305718 GGGTGAGCTGAGGAGGAGT 60.306 63.158 0.00 0.00 0.00 3.85
235 236 2.063378 GGGGTGAGCTGAGGAGGAG 61.063 68.421 0.00 0.00 0.00 3.69
236 237 2.039624 GGGGTGAGCTGAGGAGGA 59.960 66.667 0.00 0.00 0.00 3.71
237 238 3.465403 CGGGGTGAGCTGAGGAGG 61.465 72.222 0.00 0.00 0.00 4.30
238 239 2.681778 ACGGGGTGAGCTGAGGAG 60.682 66.667 0.00 0.00 0.00 3.69
239 240 2.680352 GACGGGGTGAGCTGAGGA 60.680 66.667 0.00 0.00 0.00 3.71
240 241 4.135153 CGACGGGGTGAGCTGAGG 62.135 72.222 0.00 0.00 0.00 3.86
241 242 4.135153 CCGACGGGGTGAGCTGAG 62.135 72.222 5.81 0.00 0.00 3.35
328 331 0.107654 GGGCGATGCTAGGAGTGTTT 60.108 55.000 0.00 0.00 0.00 2.83
331 334 2.028190 CGGGCGATGCTAGGAGTG 59.972 66.667 0.00 0.00 0.00 3.51
332 335 2.123854 TCGGGCGATGCTAGGAGT 60.124 61.111 0.00 0.00 0.00 3.85
333 336 2.336809 GTCGGGCGATGCTAGGAG 59.663 66.667 0.00 0.00 0.00 3.69
334 337 3.224324 GGTCGGGCGATGCTAGGA 61.224 66.667 0.00 0.00 0.00 2.94
335 338 3.536917 TGGTCGGGCGATGCTAGG 61.537 66.667 0.00 0.00 0.00 3.02
336 339 2.279517 GTGGTCGGGCGATGCTAG 60.280 66.667 0.00 0.00 0.00 3.42
356 359 1.226746 GAAGAGTTTCGTGGTGGTGG 58.773 55.000 0.00 0.00 0.00 4.61
370 378 2.125912 CGTCCCGCTGGTGAAGAG 60.126 66.667 0.00 0.00 0.00 2.85
402 413 2.103143 CCTGCTGGCTCGACGTAG 59.897 66.667 0.00 0.00 0.00 3.51
403 414 3.449227 CCCTGCTGGCTCGACGTA 61.449 66.667 3.63 0.00 0.00 3.57
421 432 1.612442 GTAGGGGTGAGGCAGGTCA 60.612 63.158 0.00 0.00 0.00 4.02
431 442 1.295020 TGGGAGAATTGGTAGGGGTG 58.705 55.000 0.00 0.00 0.00 4.61
443 454 4.519906 AGTTCAGACCTTTTTGGGAGAA 57.480 40.909 0.00 0.00 41.11 2.87
445 456 3.243535 GCAAGTTCAGACCTTTTTGGGAG 60.244 47.826 0.00 0.00 41.11 4.30
446 457 2.693074 GCAAGTTCAGACCTTTTTGGGA 59.307 45.455 0.00 0.00 41.11 4.37
447 458 2.695147 AGCAAGTTCAGACCTTTTTGGG 59.305 45.455 0.00 0.00 41.11 4.12
685 701 2.908940 CCAAGGCGATGGGGATGC 60.909 66.667 4.63 0.00 36.79 3.91
711 727 4.603610 AGGACCCTATTATTATTGCAGCCT 59.396 41.667 0.00 0.00 0.00 4.58
768 799 1.172180 GGTGGTGATGTGGTGTGGTG 61.172 60.000 0.00 0.00 0.00 4.17
769 800 1.150536 GGTGGTGATGTGGTGTGGT 59.849 57.895 0.00 0.00 0.00 4.16
770 801 1.603455 GGGTGGTGATGTGGTGTGG 60.603 63.158 0.00 0.00 0.00 4.17
771 802 1.603455 GGGGTGGTGATGTGGTGTG 60.603 63.158 0.00 0.00 0.00 3.82
772 803 1.650242 TTGGGGTGGTGATGTGGTGT 61.650 55.000 0.00 0.00 0.00 4.16
791 826 1.317321 GCTAACCCTACCCTCCCCT 59.683 63.158 0.00 0.00 0.00 4.79
792 827 1.769295 GGCTAACCCTACCCTCCCC 60.769 68.421 0.00 0.00 0.00 4.81
793 828 3.982891 GGCTAACCCTACCCTCCC 58.017 66.667 0.00 0.00 0.00 4.30
818 853 2.131067 GGGAGGGAGGAAGAGAGCG 61.131 68.421 0.00 0.00 0.00 5.03
835 875 4.154347 GGCTGAGGTGAGGCGAGG 62.154 72.222 0.00 0.00 0.00 4.63
943 983 4.657824 CAACCTGGTCGACGGCGT 62.658 66.667 14.65 14.65 38.98 5.68
961 1001 1.296068 CGGGTTAAGTGGCGGGTAA 59.704 57.895 0.00 0.00 0.00 2.85
963 1003 4.710167 GCGGGTTAAGTGGCGGGT 62.710 66.667 0.00 0.00 0.00 5.28
987 1035 4.687215 GCACTCACTGGCTGGCGA 62.687 66.667 0.00 0.00 0.00 5.54
1003 1051 1.656095 CGCAGCAGTTGAAGTAGTAGC 59.344 52.381 0.00 0.00 0.00 3.58
1024 1075 3.416880 TTCTTCATCCCCGGCCCC 61.417 66.667 0.00 0.00 0.00 5.80
1026 1077 2.517166 GCTTCTTCATCCCCGGCC 60.517 66.667 0.00 0.00 0.00 6.13
1027 1078 1.821332 CAGCTTCTTCATCCCCGGC 60.821 63.158 0.00 0.00 0.00 6.13
1028 1079 0.830648 TACAGCTTCTTCATCCCCGG 59.169 55.000 0.00 0.00 0.00 5.73
1180 1237 1.733402 CTCCAGAGAGCAGGTAGGCG 61.733 65.000 0.00 0.00 39.27 5.52
1192 1249 3.847602 CCGCCAGCTCCTCCAGAG 61.848 72.222 0.00 0.00 46.29 3.35
1528 1597 4.760047 AGGTGGTCATCCGCGCAC 62.760 66.667 8.75 1.48 44.47 5.34
1529 1598 4.758251 CAGGTGGTCATCCGCGCA 62.758 66.667 8.75 0.00 44.47 6.09
1532 1601 2.359850 TTGCAGGTGGTCATCCGC 60.360 61.111 0.00 0.00 42.95 5.54
1677 1746 1.807573 CTCTTCTCGGCGGAGTTGC 60.808 63.158 19.51 0.00 41.26 4.17
1680 1749 3.816524 CGCTCTTCTCGGCGGAGT 61.817 66.667 19.51 0.00 46.42 3.85
1790 1865 3.822167 CTCCTTCCTCCCTAATCTACGAC 59.178 52.174 0.00 0.00 0.00 4.34
1806 1881 1.349357 ACCTTCTTGCTGGTCTCCTTC 59.651 52.381 0.00 0.00 29.18 3.46
1808 1883 0.980423 GACCTTCTTGCTGGTCTCCT 59.020 55.000 5.05 0.00 46.65 3.69
1817 1899 2.291741 CTGGTTTCACTGACCTTCTTGC 59.708 50.000 0.00 0.00 38.04 4.01
1857 1984 1.864029 GCTTGCTTGGACAAAACGACC 60.864 52.381 0.00 0.00 0.00 4.79
1858 1985 1.202245 TGCTTGCTTGGACAAAACGAC 60.202 47.619 0.00 0.00 0.00 4.34
1859 1986 1.098869 TGCTTGCTTGGACAAAACGA 58.901 45.000 0.00 0.00 0.00 3.85
1860 1987 1.854126 CTTGCTTGCTTGGACAAAACG 59.146 47.619 0.00 0.00 0.00 3.60
1964 2107 2.024414 GGGAGATTTTGGTCGGATTGG 58.976 52.381 0.00 0.00 0.00 3.16
2039 2182 4.096681 GGAAGAAAGGTGAAATGGGGAAT 58.903 43.478 0.00 0.00 0.00 3.01
2051 2194 0.698818 AATGGCGAGGGAAGAAAGGT 59.301 50.000 0.00 0.00 0.00 3.50
2104 2261 5.303165 CAACTAGCAGCAGGAATCATATCA 58.697 41.667 0.00 0.00 0.00 2.15
2105 2262 4.153835 GCAACTAGCAGCAGGAATCATATC 59.846 45.833 0.00 0.00 44.79 1.63
2106 2263 4.070716 GCAACTAGCAGCAGGAATCATAT 58.929 43.478 0.00 0.00 44.79 1.78
2107 2264 3.470709 GCAACTAGCAGCAGGAATCATA 58.529 45.455 0.00 0.00 44.79 2.15
2108 2265 2.295885 GCAACTAGCAGCAGGAATCAT 58.704 47.619 0.00 0.00 44.79 2.45
2283 2443 0.820871 GTGAGTGAGTAGCAGGGGAG 59.179 60.000 0.00 0.00 0.00 4.30
2289 2453 2.529632 ACCATGAGTGAGTGAGTAGCA 58.470 47.619 0.00 0.00 0.00 3.49
2323 2487 1.709994 GGGGAGATGGATGGGTGTCC 61.710 65.000 0.00 0.00 38.81 4.02
2324 2488 0.695803 AGGGGAGATGGATGGGTGTC 60.696 60.000 0.00 0.00 0.00 3.67
2333 2497 3.694364 CATCGTTGAGGGGAGATGG 57.306 57.895 0.00 0.00 37.43 3.51
2337 2501 1.486310 TGATTCCATCGTTGAGGGGAG 59.514 52.381 0.00 0.00 33.93 4.30
2338 2502 1.578897 TGATTCCATCGTTGAGGGGA 58.421 50.000 0.00 0.00 33.93 4.81
2344 2509 3.974871 TGATGCATGATTCCATCGTTG 57.025 42.857 2.46 0.00 40.48 4.10
2365 2530 8.530341 TGTACTTGATACTACGAGTAGTTCGCA 61.530 40.741 19.39 12.71 43.35 5.10
2366 2531 6.237942 TGTACTTGATACTACGAGTAGTTCGC 60.238 42.308 19.39 10.69 43.35 4.70
2367 2532 7.226757 TGTACTTGATACTACGAGTAGTTCG 57.773 40.000 19.39 0.00 43.35 3.95
2368 2533 9.649024 GATTGTACTTGATACTACGAGTAGTTC 57.351 37.037 19.39 15.87 43.35 3.01
2369 2534 9.393512 AGATTGTACTTGATACTACGAGTAGTT 57.606 33.333 19.39 8.91 43.35 2.24
2377 2542 7.185453 ACGACGAAGATTGTACTTGATACTAC 58.815 38.462 0.00 0.00 34.56 2.73
2383 2548 3.058708 ACGACGACGAAGATTGTACTTGA 60.059 43.478 15.32 0.00 42.66 3.02
2397 2562 0.379760 CAACAACAACGACGACGACG 60.380 55.000 17.60 17.60 42.66 5.12
2400 2565 1.710418 GAACAACAACAACGACGACG 58.290 50.000 5.58 5.58 45.75 5.12
2406 2571 3.227147 TCAACAACGAACAACAACAACG 58.773 40.909 0.00 0.00 0.00 4.10
2419 2584 5.153513 ACCAAATCGAATCAATCAACAACG 58.846 37.500 0.00 0.00 0.00 4.10
2434 2599 1.590238 CAGCTCTCGCTTACCAAATCG 59.410 52.381 0.00 0.00 46.47 3.34
2441 2606 0.527385 CTGCTCCAGCTCTCGCTTAC 60.527 60.000 0.00 0.00 46.47 2.34
2442 2607 0.967887 ACTGCTCCAGCTCTCGCTTA 60.968 55.000 0.00 0.00 46.47 3.09
2443 2608 1.825281 AACTGCTCCAGCTCTCGCTT 61.825 55.000 0.00 0.00 46.47 4.68
2446 2611 1.515952 CGAACTGCTCCAGCTCTCG 60.516 63.158 0.00 2.17 42.66 4.04
2447 2612 0.735632 CACGAACTGCTCCAGCTCTC 60.736 60.000 0.00 0.00 42.66 3.20
2448 2613 1.291588 CACGAACTGCTCCAGCTCT 59.708 57.895 0.00 0.00 42.66 4.09
2449 2614 1.739562 CCACGAACTGCTCCAGCTC 60.740 63.158 0.00 0.00 42.66 4.09
2450 2615 2.345244 CCACGAACTGCTCCAGCT 59.655 61.111 0.00 0.00 42.66 4.24
2451 2616 3.426568 GCCACGAACTGCTCCAGC 61.427 66.667 0.00 0.00 42.50 4.85
2452 2617 2.031012 TGCCACGAACTGCTCCAG 59.969 61.111 0.00 0.00 37.52 3.86
2453 2618 2.280797 GTGCCACGAACTGCTCCA 60.281 61.111 0.00 0.00 0.00 3.86
2454 2619 3.050275 GGTGCCACGAACTGCTCC 61.050 66.667 0.00 0.00 34.40 4.70
2464 2629 0.459585 TCGAGCTTTATCGGTGCCAC 60.460 55.000 0.00 0.00 42.93 5.01
2493 2666 6.312487 CCGATGATGTGATGATTATTTGCTC 58.688 40.000 0.00 0.00 0.00 4.26
2496 2669 6.004408 TGCCGATGATGTGATGATTATTTG 57.996 37.500 0.00 0.00 0.00 2.32
2499 2672 3.688185 GCTGCCGATGATGTGATGATTAT 59.312 43.478 0.00 0.00 0.00 1.28
2508 2681 0.523072 GTTGTTGCTGCCGATGATGT 59.477 50.000 0.00 0.00 0.00 3.06
2509 2682 0.522626 TGTTGTTGCTGCCGATGATG 59.477 50.000 0.00 0.00 0.00 3.07
2513 2686 1.106351 TGGTTGTTGTTGCTGCCGAT 61.106 50.000 0.00 0.00 0.00 4.18
2514 2692 1.750780 TGGTTGTTGTTGCTGCCGA 60.751 52.632 0.00 0.00 0.00 5.54
2516 2694 1.227234 GGTGGTTGTTGTTGCTGCC 60.227 57.895 0.00 0.00 0.00 4.85
2517 2695 0.249031 GAGGTGGTTGTTGTTGCTGC 60.249 55.000 0.00 0.00 0.00 5.25
2520 2698 1.604278 GAGAGAGGTGGTTGTTGTTGC 59.396 52.381 0.00 0.00 0.00 4.17
2522 2700 3.933861 AAGAGAGAGGTGGTTGTTGTT 57.066 42.857 0.00 0.00 0.00 2.83
2525 2703 3.243907 CGAGAAAGAGAGAGGTGGTTGTT 60.244 47.826 0.00 0.00 0.00 2.83
2526 2704 2.297597 CGAGAAAGAGAGAGGTGGTTGT 59.702 50.000 0.00 0.00 0.00 3.32
2528 2706 2.877866 TCGAGAAAGAGAGAGGTGGTT 58.122 47.619 0.00 0.00 0.00 3.67
2566 2825 9.752961 GTAGTAATAAAAGGCCTGTTTCAAAAA 57.247 29.630 14.99 0.00 0.00 1.94
2574 2833 8.835550 ACTACTAGTAGTAATAAAAGGCCTGT 57.164 34.615 29.96 0.00 43.98 4.00
2595 2854 7.472543 ACGCAATCAAATCAAAGGAATACTAC 58.527 34.615 0.00 0.00 0.00 2.73
2598 2857 7.581011 AAACGCAATCAAATCAAAGGAATAC 57.419 32.000 0.00 0.00 0.00 1.89
2602 2861 4.749099 CCAAAACGCAATCAAATCAAAGGA 59.251 37.500 0.00 0.00 0.00 3.36
2603 2862 4.511082 ACCAAAACGCAATCAAATCAAAGG 59.489 37.500 0.00 0.00 0.00 3.11
2604 2863 5.006552 ACACCAAAACGCAATCAAATCAAAG 59.993 36.000 0.00 0.00 0.00 2.77
2606 2865 4.437239 ACACCAAAACGCAATCAAATCAA 58.563 34.783 0.00 0.00 0.00 2.57
2607 2866 4.052159 ACACCAAAACGCAATCAAATCA 57.948 36.364 0.00 0.00 0.00 2.57
2608 2867 6.586082 AGAATACACCAAAACGCAATCAAATC 59.414 34.615 0.00 0.00 0.00 2.17
2609 2868 6.454795 AGAATACACCAAAACGCAATCAAAT 58.545 32.000 0.00 0.00 0.00 2.32
2611 2870 5.446143 AGAATACACCAAAACGCAATCAA 57.554 34.783 0.00 0.00 0.00 2.57
2612 2871 6.751514 ATAGAATACACCAAAACGCAATCA 57.248 33.333 0.00 0.00 0.00 2.57
2615 2874 6.348950 CCAGAATAGAATACACCAAAACGCAA 60.349 38.462 0.00 0.00 0.00 4.85
2616 2875 5.123186 CCAGAATAGAATACACCAAAACGCA 59.877 40.000 0.00 0.00 0.00 5.24
2618 2877 5.123186 TGCCAGAATAGAATACACCAAAACG 59.877 40.000 0.00 0.00 0.00 3.60
2619 2878 6.509418 TGCCAGAATAGAATACACCAAAAC 57.491 37.500 0.00 0.00 0.00 2.43
2633 2898 1.475034 GCCTCGTCCAATGCCAGAATA 60.475 52.381 0.00 0.00 0.00 1.75
2637 2902 1.243342 TTTGCCTCGTCCAATGCCAG 61.243 55.000 0.00 0.00 0.00 4.85
2648 2913 0.169672 CAGTGCATCCTTTTGCCTCG 59.830 55.000 0.00 0.00 42.06 4.63
2673 2938 7.878644 GGTACATTGGGAGGAGAAAATATCTAC 59.121 40.741 0.00 0.00 38.96 2.59
2683 2948 0.616395 TGCGGTACATTGGGAGGAGA 60.616 55.000 0.00 0.00 0.00 3.71
2715 2980 5.877564 ACTAGCAGGAGTAGCAATTCTTTTC 59.122 40.000 0.00 0.00 0.00 2.29
2734 2999 6.086871 GGATAACTTTCACTTTGCAACTAGC 58.913 40.000 0.00 0.00 45.96 3.42
2738 3003 4.675114 CACGGATAACTTTCACTTTGCAAC 59.325 41.667 0.00 0.00 0.00 4.17
2747 3018 0.391927 CGGCCCACGGATAACTTTCA 60.392 55.000 0.00 0.00 39.42 2.69
2765 3036 0.458716 ACAAACAAACAAACCGCCCG 60.459 50.000 0.00 0.00 0.00 6.13
2769 3040 4.835991 CGAAACAAACAAACAAACAAACCG 59.164 37.500 0.00 0.00 0.00 4.44
2770 3041 4.609295 GCGAAACAAACAAACAAACAAACC 59.391 37.500 0.00 0.00 0.00 3.27
2771 3042 5.436410 AGCGAAACAAACAAACAAACAAAC 58.564 33.333 0.00 0.00 0.00 2.93
2772 3043 5.333416 GGAGCGAAACAAACAAACAAACAAA 60.333 36.000 0.00 0.00 0.00 2.83
2773 3044 4.150804 GGAGCGAAACAAACAAACAAACAA 59.849 37.500 0.00 0.00 0.00 2.83
2774 3045 3.675698 GGAGCGAAACAAACAAACAAACA 59.324 39.130 0.00 0.00 0.00 2.83
2775 3046 3.061563 GGGAGCGAAACAAACAAACAAAC 59.938 43.478 0.00 0.00 0.00 2.93
2776 3047 3.254892 GGGAGCGAAACAAACAAACAAA 58.745 40.909 0.00 0.00 0.00 2.83
2777 3048 2.231478 TGGGAGCGAAACAAACAAACAA 59.769 40.909 0.00 0.00 0.00 2.83
2778 3049 1.819288 TGGGAGCGAAACAAACAAACA 59.181 42.857 0.00 0.00 0.00 2.83
2779 3050 2.159296 AGTGGGAGCGAAACAAACAAAC 60.159 45.455 0.00 0.00 0.00 2.93
2780 3051 2.096248 AGTGGGAGCGAAACAAACAAA 58.904 42.857 0.00 0.00 0.00 2.83
2781 3052 1.673920 GAGTGGGAGCGAAACAAACAA 59.326 47.619 0.00 0.00 0.00 2.83
2782 3053 1.134220 AGAGTGGGAGCGAAACAAACA 60.134 47.619 0.00 0.00 0.00 2.83
2818 3089 2.779506 AGTGCACTAAGCTTTGTACCC 58.220 47.619 20.16 0.00 45.94 3.69
2911 3242 4.762251 AGGGAGCAAAGCTACTTACAAAAG 59.238 41.667 0.71 0.00 39.87 2.27
2915 3246 2.236395 GGAGGGAGCAAAGCTACTTACA 59.764 50.000 0.71 0.00 39.87 2.41
2916 3247 2.502130 AGGAGGGAGCAAAGCTACTTAC 59.498 50.000 0.71 0.00 39.87 2.34
2917 3248 2.766828 GAGGAGGGAGCAAAGCTACTTA 59.233 50.000 0.71 0.00 39.87 2.24
2918 3249 1.557371 GAGGAGGGAGCAAAGCTACTT 59.443 52.381 0.71 0.00 39.87 2.24
2919 3250 1.199615 GAGGAGGGAGCAAAGCTACT 58.800 55.000 0.71 0.00 39.87 2.57
3055 3404 1.168714 CTGTTCCAAAGGCTACCTGC 58.831 55.000 0.00 0.00 41.94 4.85
3056 3405 1.168714 GCTGTTCCAAAGGCTACCTG 58.831 55.000 0.00 0.00 32.13 4.00
3057 3406 1.068121 AGCTGTTCCAAAGGCTACCT 58.932 50.000 0.00 0.00 33.87 3.08
3058 3407 1.168714 CAGCTGTTCCAAAGGCTACC 58.831 55.000 5.25 0.00 33.43 3.18
3060 3409 0.609131 GGCAGCTGTTCCAAAGGCTA 60.609 55.000 16.64 0.00 33.43 3.93
3065 3414 1.136695 CTTGTTGGCAGCTGTTCCAAA 59.863 47.619 22.65 10.97 43.25 3.28
3066 3415 0.746063 CTTGTTGGCAGCTGTTCCAA 59.254 50.000 18.61 18.61 39.81 3.53
3067 3416 1.108727 CCTTGTTGGCAGCTGTTCCA 61.109 55.000 16.64 12.39 0.00 3.53
3068 3417 1.109323 ACCTTGTTGGCAGCTGTTCC 61.109 55.000 16.64 9.60 40.22 3.62
3069 3418 0.746659 AACCTTGTTGGCAGCTGTTC 59.253 50.000 16.64 8.86 40.22 3.18
3071 3420 0.395586 TGAACCTTGTTGGCAGCTGT 60.396 50.000 16.64 0.00 40.22 4.40
3073 3422 0.963962 CATGAACCTTGTTGGCAGCT 59.036 50.000 2.28 0.00 40.22 4.24
3075 3424 2.673043 GCATCATGAACCTTGTTGGCAG 60.673 50.000 0.00 0.00 40.22 4.85
3076 3425 1.273048 GCATCATGAACCTTGTTGGCA 59.727 47.619 0.00 0.00 40.22 4.92
3078 3427 1.205417 GGGCATCATGAACCTTGTTGG 59.795 52.381 15.58 0.00 42.93 3.77
3079 3428 1.894466 TGGGCATCATGAACCTTGTTG 59.106 47.619 15.58 2.48 0.00 3.33
3080 3429 1.895131 GTGGGCATCATGAACCTTGTT 59.105 47.619 15.58 0.00 0.00 2.83
3082 3431 0.452987 CGTGGGCATCATGAACCTTG 59.547 55.000 15.58 4.16 34.35 3.61
3083 3432 1.315257 GCGTGGGCATCATGAACCTT 61.315 55.000 15.58 0.00 39.62 3.50
3084 3433 1.750399 GCGTGGGCATCATGAACCT 60.750 57.895 15.58 0.00 39.62 3.50
3085 3434 0.463654 TAGCGTGGGCATCATGAACC 60.464 55.000 0.00 4.35 43.41 3.62
3087 3436 0.251634 TGTAGCGTGGGCATCATGAA 59.748 50.000 0.00 0.00 43.41 2.57
3089 3438 0.462581 AGTGTAGCGTGGGCATCATG 60.463 55.000 0.00 0.00 43.41 3.07
3091 3440 0.459899 CTAGTGTAGCGTGGGCATCA 59.540 55.000 0.00 0.00 43.41 3.07
3093 3442 1.144057 GCTAGTGTAGCGTGGGCAT 59.856 57.895 0.00 0.00 42.62 4.40
3094 3443 2.577059 GCTAGTGTAGCGTGGGCA 59.423 61.111 0.00 0.00 42.62 5.36
3102 3451 3.758554 ACATTTTGGCAAGGCTAGTGTAG 59.241 43.478 0.00 0.00 0.00 2.74
3104 3453 2.597455 ACATTTTGGCAAGGCTAGTGT 58.403 42.857 0.00 0.00 0.00 3.55
3105 3454 3.319755 CAACATTTTGGCAAGGCTAGTG 58.680 45.455 0.00 0.00 0.00 2.74
3106 3455 2.299867 CCAACATTTTGGCAAGGCTAGT 59.700 45.455 0.00 0.00 46.09 2.57
3107 3456 2.963432 CCAACATTTTGGCAAGGCTAG 58.037 47.619 0.00 0.00 46.09 3.42
3138 3487 6.707161 CCAAGCCATGAATTTTCTCTGAAAAA 59.293 34.615 9.13 0.00 32.99 1.94
3142 3491 3.194116 GCCAAGCCATGAATTTTCTCTGA 59.806 43.478 0.00 0.00 0.00 3.27
3143 3492 3.056393 TGCCAAGCCATGAATTTTCTCTG 60.056 43.478 0.00 0.00 0.00 3.35
3144 3493 3.167485 TGCCAAGCCATGAATTTTCTCT 58.833 40.909 0.00 0.00 0.00 3.10
3145 3494 3.518590 CTGCCAAGCCATGAATTTTCTC 58.481 45.455 0.00 0.00 0.00 2.87
3146 3495 3.604875 CTGCCAAGCCATGAATTTTCT 57.395 42.857 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.