Multiple sequence alignment - TraesCS2A01G542600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G542600 chr2A 100.000 3596 0 0 1 3596 753107172 753103577 0.000000e+00 6641.0
1 TraesCS2A01G542600 chr2A 90.136 588 57 1 2691 3277 4769912 4769325 0.000000e+00 763.0
2 TraesCS2A01G542600 chr2A 90.160 376 34 2 3224 3596 4769334 4768959 1.500000e-133 486.0
3 TraesCS2A01G542600 chr2A 92.933 283 19 1 532 813 743375496 743375214 9.290000e-111 411.0
4 TraesCS2A01G542600 chr2D 93.050 2403 136 12 879 3277 621359946 621357571 0.000000e+00 3483.0
5 TraesCS2A01G542600 chr2D 90.672 536 40 7 1 532 621364758 621364229 0.000000e+00 704.0
6 TraesCS2A01G542600 chr2D 93.617 376 20 3 3224 3596 621357580 621357206 3.140000e-155 558.0
7 TraesCS2A01G542600 chr2D 89.655 319 33 0 2691 3009 566126886 566127204 1.200000e-109 407.0
8 TraesCS2A01G542600 chr2D 93.548 217 14 0 3061 3277 566127607 566127823 1.250000e-84 324.0
9 TraesCS2A01G542600 chr2B 92.049 1874 131 10 827 2692 762118530 762116667 0.000000e+00 2619.0
10 TraesCS2A01G542600 chr2B 83.403 476 47 17 46 494 762119044 762118574 2.580000e-111 412.0
11 TraesCS2A01G542600 chr2B 97.015 67 2 0 466 532 762118579 762118513 2.930000e-21 113.0
12 TraesCS2A01G542600 chrUn 87.045 1482 164 18 1086 2563 30095184 30096641 0.000000e+00 1648.0
13 TraesCS2A01G542600 chr4B 86.684 1502 172 16 1063 2563 667426637 667428111 0.000000e+00 1640.0
14 TraesCS2A01G542600 chr4B 85.964 1489 184 12 1089 2563 649353938 649355415 0.000000e+00 1568.0
15 TraesCS2A01G542600 chr5A 86.815 1479 169 16 1089 2563 706653341 706654797 0.000000e+00 1628.0
16 TraesCS2A01G542600 chr5A 92.683 287 19 2 529 813 559787335 559787621 2.580000e-111 412.0
17 TraesCS2A01G542600 chr7A 83.939 1569 208 19 1001 2562 518524730 518523199 0.000000e+00 1461.0
18 TraesCS2A01G542600 chr7A 89.501 381 32 3 3224 3596 115270066 115269686 3.250000e-130 475.0
19 TraesCS2A01G542600 chr7A 94.286 280 15 1 532 810 696986080 696986359 9.230000e-116 427.0
20 TraesCS2A01G542600 chr7A 100.000 28 0 0 21 48 682865892 682865919 6.000000e-03 52.8
21 TraesCS2A01G542600 chr7B 82.939 1565 228 14 1001 2559 502733932 502735463 0.000000e+00 1375.0
22 TraesCS2A01G542600 chr7B 90.460 587 49 1 2691 3270 95338128 95338714 0.000000e+00 767.0
23 TraesCS2A01G542600 chr7B 88.384 594 49 3 2690 3277 158552453 158551874 0.000000e+00 697.0
24 TraesCS2A01G542600 chr7B 91.489 376 28 3 3224 3596 158551883 158551509 6.880000e-142 514.0
25 TraesCS2A01G542600 chr7D 82.409 1569 235 19 1001 2562 477855580 477857114 0.000000e+00 1330.0
26 TraesCS2A01G542600 chr7D 81.094 1481 246 23 1093 2562 509533776 509532319 0.000000e+00 1153.0
27 TraesCS2A01G542600 chr5D 92.164 587 45 1 2691 3277 135058191 135057606 0.000000e+00 828.0
28 TraesCS2A01G542600 chr5D 89.006 473 40 10 2691 3158 22407953 22407488 3.110000e-160 575.0
29 TraesCS2A01G542600 chr5D 90.957 376 26 4 3224 3596 135057615 135057245 1.930000e-137 499.0
30 TraesCS2A01G542600 chr6D 90.662 589 52 2 2691 3277 392588942 392588355 0.000000e+00 780.0
31 TraesCS2A01G542600 chr6D 91.979 374 26 3 3226 3596 392588362 392587990 4.110000e-144 521.0
32 TraesCS2A01G542600 chr5B 88.814 590 49 3 2691 3277 439281120 439281695 0.000000e+00 708.0
33 TraesCS2A01G542600 chr5B 91.489 376 26 4 3224 3596 439281686 439282058 2.480000e-141 512.0
34 TraesCS2A01G542600 chr1A 89.172 471 45 5 2692 3160 27052903 27052437 1.860000e-162 582.0
35 TraesCS2A01G542600 chr1A 91.694 301 23 2 515 813 560407748 560408048 2.000000e-112 416.0
36 TraesCS2A01G542600 chr1D 92.021 376 26 3 3224 3596 314656621 314656995 3.180000e-145 525.0
37 TraesCS2A01G542600 chr6B 85.065 462 58 8 3141 3596 281256105 281256561 9.100000e-126 460.0
38 TraesCS2A01G542600 chr6A 93.640 283 17 1 532 813 46549159 46548877 4.290000e-114 422.0
39 TraesCS2A01G542600 chr6A 93.007 286 19 1 529 813 422775945 422776230 2.000000e-112 416.0
40 TraesCS2A01G542600 chr6A 93.214 280 18 1 534 812 80803076 80803355 9.290000e-111 411.0
41 TraesCS2A01G542600 chr3A 93.286 283 18 1 532 813 111839796 111840078 2.000000e-112 416.0
42 TraesCS2A01G542600 chr3A 93.286 283 18 1 532 813 597887724 597888006 2.000000e-112 416.0
43 TraesCS2A01G542600 chr3D 89.615 260 25 2 2690 2949 9111274 9111017 2.680000e-86 329.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G542600 chr2A 753103577 753107172 3595 True 6641.0 6641 100.000000 1 3596 1 chr2A.!!$R2 3595
1 TraesCS2A01G542600 chr2A 4768959 4769912 953 True 624.5 763 90.148000 2691 3596 2 chr2A.!!$R3 905
2 TraesCS2A01G542600 chr2D 621357206 621359946 2740 True 2020.5 3483 93.333500 879 3596 2 chr2D.!!$R2 2717
3 TraesCS2A01G542600 chr2D 621364229 621364758 529 True 704.0 704 90.672000 1 532 1 chr2D.!!$R1 531
4 TraesCS2A01G542600 chr2D 566126886 566127823 937 False 365.5 407 91.601500 2691 3277 2 chr2D.!!$F1 586
5 TraesCS2A01G542600 chr2B 762116667 762119044 2377 True 1048.0 2619 90.822333 46 2692 3 chr2B.!!$R1 2646
6 TraesCS2A01G542600 chrUn 30095184 30096641 1457 False 1648.0 1648 87.045000 1086 2563 1 chrUn.!!$F1 1477
7 TraesCS2A01G542600 chr4B 667426637 667428111 1474 False 1640.0 1640 86.684000 1063 2563 1 chr4B.!!$F2 1500
8 TraesCS2A01G542600 chr4B 649353938 649355415 1477 False 1568.0 1568 85.964000 1089 2563 1 chr4B.!!$F1 1474
9 TraesCS2A01G542600 chr5A 706653341 706654797 1456 False 1628.0 1628 86.815000 1089 2563 1 chr5A.!!$F2 1474
10 TraesCS2A01G542600 chr7A 518523199 518524730 1531 True 1461.0 1461 83.939000 1001 2562 1 chr7A.!!$R2 1561
11 TraesCS2A01G542600 chr7B 502733932 502735463 1531 False 1375.0 1375 82.939000 1001 2559 1 chr7B.!!$F2 1558
12 TraesCS2A01G542600 chr7B 95338128 95338714 586 False 767.0 767 90.460000 2691 3270 1 chr7B.!!$F1 579
13 TraesCS2A01G542600 chr7B 158551509 158552453 944 True 605.5 697 89.936500 2690 3596 2 chr7B.!!$R1 906
14 TraesCS2A01G542600 chr7D 477855580 477857114 1534 False 1330.0 1330 82.409000 1001 2562 1 chr7D.!!$F1 1561
15 TraesCS2A01G542600 chr7D 509532319 509533776 1457 True 1153.0 1153 81.094000 1093 2562 1 chr7D.!!$R1 1469
16 TraesCS2A01G542600 chr5D 135057245 135058191 946 True 663.5 828 91.560500 2691 3596 2 chr5D.!!$R2 905
17 TraesCS2A01G542600 chr6D 392587990 392588942 952 True 650.5 780 91.320500 2691 3596 2 chr6D.!!$R1 905
18 TraesCS2A01G542600 chr5B 439281120 439282058 938 False 610.0 708 90.151500 2691 3596 2 chr5B.!!$F1 905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 641 0.034477 GTGGTATCCCAACCCACCAG 60.034 60.0 0.00 0.00 44.15 4.00 F
794 849 0.179121 TAAGGGTGAGTGTATGCGCG 60.179 55.0 0.00 0.00 0.00 6.86 F
1063 1122 0.813610 TTGCCACCTGACGTCTGTTG 60.814 55.0 17.92 14.73 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1803 1871 0.106819 GCTGCCATCTGGTGAGGATT 60.107 55.000 0.00 0.0 37.57 3.01 R
1942 2010 1.302832 CCAGCTTCGGGAACTGCTT 60.303 57.895 0.00 0.0 33.03 3.91 R
2932 3036 0.030908 GGACTGCTCGAGGTTATCCG 59.969 60.000 15.58 0.0 39.05 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.035820 ACAACGTGCGGGGTATCATT 60.036 50.000 0.00 0.00 0.00 2.57
150 152 2.760634 ATGACGTTCTACCATGCACA 57.239 45.000 0.00 0.00 0.00 4.57
175 177 1.783071 TTCCATGCATGCATCCACAT 58.217 45.000 30.07 6.83 33.90 3.21
234 236 9.469807 CTAGTCTGAGACAAAATATATGTGGTC 57.530 37.037 15.86 2.44 34.60 4.02
235 237 7.851228 AGTCTGAGACAAAATATATGTGGTCA 58.149 34.615 15.86 7.94 34.60 4.02
308 337 9.581099 AAAGTTTAATGTTTTGTTGTCTACCAG 57.419 29.630 0.00 0.00 0.00 4.00
339 368 4.394099 GCACTTGTTGCCAAATGAATTC 57.606 40.909 0.00 0.00 46.63 2.17
368 397 7.828717 TGGTACACAATGAAACATCATGATACT 59.171 33.333 8.15 0.00 0.00 2.12
383 412 7.786178 TCATGATACTCTTTGAAATAACGGG 57.214 36.000 0.00 0.00 0.00 5.28
388 418 8.726988 TGATACTCTTTGAAATAACGGGAAAAG 58.273 33.333 0.00 0.00 0.00 2.27
389 419 6.327279 ACTCTTTGAAATAACGGGAAAAGG 57.673 37.500 0.00 0.00 0.00 3.11
425 456 9.912634 ATCTTACAATAATTTGAAACACCACAG 57.087 29.630 0.00 0.00 36.64 3.66
533 588 5.681337 TCTAGATAGTTCTCACTCATGCG 57.319 43.478 0.00 0.00 34.06 4.73
534 589 5.368989 TCTAGATAGTTCTCACTCATGCGA 58.631 41.667 0.00 0.00 34.06 5.10
535 590 4.991153 AGATAGTTCTCACTCATGCGAA 57.009 40.909 0.00 0.00 34.06 4.70
536 591 4.677584 AGATAGTTCTCACTCATGCGAAC 58.322 43.478 2.66 2.66 46.50 3.95
538 593 1.795768 GTTCTCACTCATGCGAACCA 58.204 50.000 0.00 0.00 42.34 3.67
539 594 2.143122 GTTCTCACTCATGCGAACCAA 58.857 47.619 0.00 0.00 42.34 3.67
540 595 2.744202 GTTCTCACTCATGCGAACCAAT 59.256 45.455 0.00 0.00 42.34 3.16
541 596 2.621338 TCTCACTCATGCGAACCAATC 58.379 47.619 0.00 0.00 0.00 2.67
542 597 2.234661 TCTCACTCATGCGAACCAATCT 59.765 45.455 0.00 0.00 0.00 2.40
543 598 3.005554 CTCACTCATGCGAACCAATCTT 58.994 45.455 0.00 0.00 0.00 2.40
544 599 3.411446 TCACTCATGCGAACCAATCTTT 58.589 40.909 0.00 0.00 0.00 2.52
545 600 3.189080 TCACTCATGCGAACCAATCTTTG 59.811 43.478 0.00 0.00 0.00 2.77
559 614 6.199937 CCAATCTTTGGTTGAGATGGTTAG 57.800 41.667 0.00 0.00 45.93 2.34
560 615 5.126061 CCAATCTTTGGTTGAGATGGTTAGG 59.874 44.000 0.00 0.00 45.93 2.69
561 616 4.993705 TCTTTGGTTGAGATGGTTAGGT 57.006 40.909 0.00 0.00 0.00 3.08
562 617 4.651778 TCTTTGGTTGAGATGGTTAGGTG 58.348 43.478 0.00 0.00 0.00 4.00
563 618 3.433306 TTGGTTGAGATGGTTAGGTGG 57.567 47.619 0.00 0.00 0.00 4.61
564 619 2.626785 TGGTTGAGATGGTTAGGTGGA 58.373 47.619 0.00 0.00 0.00 4.02
565 620 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
566 621 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
567 622 3.600388 GTTGAGATGGTTAGGTGGACAG 58.400 50.000 0.00 0.00 0.00 3.51
568 623 2.902608 TGAGATGGTTAGGTGGACAGT 58.097 47.619 0.00 0.00 0.00 3.55
569 624 2.567169 TGAGATGGTTAGGTGGACAGTG 59.433 50.000 0.00 0.00 0.00 3.66
570 625 1.909302 AGATGGTTAGGTGGACAGTGG 59.091 52.381 0.00 0.00 0.00 4.00
571 626 1.628846 GATGGTTAGGTGGACAGTGGT 59.371 52.381 0.00 0.00 0.00 4.16
572 627 2.402182 TGGTTAGGTGGACAGTGGTA 57.598 50.000 0.00 0.00 0.00 3.25
573 628 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
574 629 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
575 630 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
576 631 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
577 632 0.118346 AGGTGGACAGTGGTATCCCA 59.882 55.000 0.00 0.00 38.87 4.37
578 633 0.988832 GGTGGACAGTGGTATCCCAA 59.011 55.000 0.00 0.00 44.15 4.12
579 634 1.339727 GGTGGACAGTGGTATCCCAAC 60.340 57.143 0.00 0.00 44.15 3.77
580 635 0.988832 TGGACAGTGGTATCCCAACC 59.011 55.000 0.00 0.00 44.15 3.77
581 636 0.255033 GGACAGTGGTATCCCAACCC 59.745 60.000 0.00 0.00 44.15 4.11
582 637 0.988832 GACAGTGGTATCCCAACCCA 59.011 55.000 0.00 0.00 44.15 4.51
585 640 2.080201 GTGGTATCCCAACCCACCA 58.920 57.895 0.00 0.00 44.15 4.17
586 641 0.034477 GTGGTATCCCAACCCACCAG 60.034 60.000 0.00 0.00 44.15 4.00
587 642 1.211567 TGGTATCCCAACCCACCAGG 61.212 60.000 0.00 0.00 37.98 4.45
603 658 1.273327 CCAGGGTTCAAATTCTGGTGC 59.727 52.381 0.00 0.00 41.21 5.01
604 659 2.242043 CAGGGTTCAAATTCTGGTGCT 58.758 47.619 0.00 0.00 0.00 4.40
605 660 2.229784 CAGGGTTCAAATTCTGGTGCTC 59.770 50.000 0.00 0.00 0.00 4.26
606 661 1.200020 GGGTTCAAATTCTGGTGCTCG 59.800 52.381 0.00 0.00 0.00 5.03
607 662 1.401539 GGTTCAAATTCTGGTGCTCGC 60.402 52.381 0.00 0.00 0.00 5.03
608 663 1.266718 GTTCAAATTCTGGTGCTCGCA 59.733 47.619 0.00 0.00 0.00 5.10
609 664 1.825090 TCAAATTCTGGTGCTCGCAT 58.175 45.000 0.00 0.00 0.00 4.73
610 665 2.161855 TCAAATTCTGGTGCTCGCATT 58.838 42.857 0.00 0.00 0.00 3.56
611 666 2.557924 TCAAATTCTGGTGCTCGCATTT 59.442 40.909 0.00 0.00 0.00 2.32
612 667 3.755905 TCAAATTCTGGTGCTCGCATTTA 59.244 39.130 0.00 0.00 0.00 1.40
613 668 4.398988 TCAAATTCTGGTGCTCGCATTTAT 59.601 37.500 0.00 0.00 0.00 1.40
614 669 4.558538 AATTCTGGTGCTCGCATTTATC 57.441 40.909 0.00 0.00 0.00 1.75
615 670 1.953559 TCTGGTGCTCGCATTTATCC 58.046 50.000 0.00 0.00 0.00 2.59
616 671 1.486310 TCTGGTGCTCGCATTTATCCT 59.514 47.619 0.00 0.00 0.00 3.24
617 672 1.600957 CTGGTGCTCGCATTTATCCTG 59.399 52.381 0.00 0.00 0.00 3.86
618 673 0.947244 GGTGCTCGCATTTATCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
619 674 1.475034 GGTGCTCGCATTTATCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
620 675 2.498167 GTGCTCGCATTTATCCTGGAT 58.502 47.619 14.66 14.66 0.00 3.41
621 676 2.880890 GTGCTCGCATTTATCCTGGATT 59.119 45.455 15.55 0.00 0.00 3.01
622 677 3.316308 GTGCTCGCATTTATCCTGGATTT 59.684 43.478 15.55 0.00 0.00 2.17
623 678 4.515191 GTGCTCGCATTTATCCTGGATTTA 59.485 41.667 15.55 3.70 0.00 1.40
624 679 5.182001 GTGCTCGCATTTATCCTGGATTTAT 59.818 40.000 15.55 5.99 0.00 1.40
625 680 5.769662 TGCTCGCATTTATCCTGGATTTATT 59.230 36.000 15.55 0.00 0.00 1.40
626 681 6.265196 TGCTCGCATTTATCCTGGATTTATTT 59.735 34.615 15.55 0.00 0.00 1.40
627 682 6.803807 GCTCGCATTTATCCTGGATTTATTTC 59.196 38.462 15.55 0.09 0.00 2.17
628 683 7.522073 GCTCGCATTTATCCTGGATTTATTTCA 60.522 37.037 15.55 0.00 0.00 2.69
629 684 7.874940 TCGCATTTATCCTGGATTTATTTCAG 58.125 34.615 15.55 1.04 0.00 3.02
630 685 7.040478 TCGCATTTATCCTGGATTTATTTCAGG 60.040 37.037 15.55 0.00 46.91 3.86
639 694 5.988287 TGGATTTATTTCAGGAATTTGGGC 58.012 37.500 0.00 0.00 0.00 5.36
640 695 5.049828 GGATTTATTTCAGGAATTTGGGCG 58.950 41.667 0.00 0.00 0.00 6.13
641 696 5.163457 GGATTTATTTCAGGAATTTGGGCGA 60.163 40.000 0.00 0.00 0.00 5.54
642 697 5.930837 TTTATTTCAGGAATTTGGGCGAT 57.069 34.783 0.00 0.00 0.00 4.58
643 698 7.255801 GGATTTATTTCAGGAATTTGGGCGATA 60.256 37.037 0.00 0.00 0.00 2.92
644 699 4.918810 ATTTCAGGAATTTGGGCGATAC 57.081 40.909 0.00 0.00 0.00 2.24
645 700 1.948104 TCAGGAATTTGGGCGATACG 58.052 50.000 0.00 0.00 0.00 3.06
657 712 3.733236 CGATACGCTTTCAGTGGGA 57.267 52.632 0.00 0.00 0.00 4.37
658 713 1.560923 CGATACGCTTTCAGTGGGAG 58.439 55.000 0.00 0.00 0.00 4.30
659 714 1.802880 CGATACGCTTTCAGTGGGAGG 60.803 57.143 0.00 0.00 0.00 4.30
660 715 1.480954 GATACGCTTTCAGTGGGAGGA 59.519 52.381 0.00 0.00 0.00 3.71
661 716 0.895530 TACGCTTTCAGTGGGAGGAG 59.104 55.000 0.00 0.00 0.00 3.69
662 717 0.832135 ACGCTTTCAGTGGGAGGAGA 60.832 55.000 0.00 0.00 0.00 3.71
663 718 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
664 719 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
665 720 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
666 721 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
667 722 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
679 734 2.863153 ACGTTCCCGTCGACTACG 59.137 61.111 14.70 18.15 46.28 3.51
692 747 1.367659 GACTACGAGTCGCCTACAGT 58.632 55.000 13.59 8.15 35.28 3.55
693 748 2.544685 GACTACGAGTCGCCTACAGTA 58.455 52.381 13.59 0.00 35.28 2.74
694 749 2.932614 GACTACGAGTCGCCTACAGTAA 59.067 50.000 13.59 0.00 35.28 2.24
695 750 2.675348 ACTACGAGTCGCCTACAGTAAC 59.325 50.000 13.59 0.00 0.00 2.50
696 751 1.818642 ACGAGTCGCCTACAGTAACT 58.181 50.000 13.59 0.00 0.00 2.24
697 752 2.157738 ACGAGTCGCCTACAGTAACTT 58.842 47.619 13.59 0.00 0.00 2.66
698 753 2.161211 ACGAGTCGCCTACAGTAACTTC 59.839 50.000 13.59 0.00 0.00 3.01
699 754 2.783333 GAGTCGCCTACAGTAACTTCG 58.217 52.381 0.00 0.00 0.00 3.79
700 755 2.157738 AGTCGCCTACAGTAACTTCGT 58.842 47.619 0.00 0.00 0.00 3.85
701 756 3.338249 AGTCGCCTACAGTAACTTCGTA 58.662 45.455 0.00 0.00 0.00 3.43
702 757 3.753272 AGTCGCCTACAGTAACTTCGTAA 59.247 43.478 0.00 0.00 0.00 3.18
703 758 4.216257 AGTCGCCTACAGTAACTTCGTAAA 59.784 41.667 0.00 0.00 0.00 2.01
704 759 4.917415 GTCGCCTACAGTAACTTCGTAAAA 59.083 41.667 0.00 0.00 0.00 1.52
705 760 5.574443 GTCGCCTACAGTAACTTCGTAAAAT 59.426 40.000 0.00 0.00 0.00 1.82
706 761 5.801947 TCGCCTACAGTAACTTCGTAAAATC 59.198 40.000 0.00 0.00 0.00 2.17
707 762 5.803967 CGCCTACAGTAACTTCGTAAAATCT 59.196 40.000 0.00 0.00 0.00 2.40
708 763 6.020837 CGCCTACAGTAACTTCGTAAAATCTC 60.021 42.308 0.00 0.00 0.00 2.75
709 764 6.810182 GCCTACAGTAACTTCGTAAAATCTCA 59.190 38.462 0.00 0.00 0.00 3.27
710 765 7.330208 GCCTACAGTAACTTCGTAAAATCTCAA 59.670 37.037 0.00 0.00 0.00 3.02
711 766 9.199982 CCTACAGTAACTTCGTAAAATCTCAAA 57.800 33.333 0.00 0.00 0.00 2.69
714 769 9.878599 ACAGTAACTTCGTAAAATCTCAAAATG 57.121 29.630 0.00 0.00 0.00 2.32
720 775 9.722056 ACTTCGTAAAATCTCAAAATGATATGC 57.278 29.630 0.00 0.00 0.00 3.14
721 776 9.173939 CTTCGTAAAATCTCAAAATGATATGCC 57.826 33.333 0.00 0.00 0.00 4.40
722 777 7.351981 TCGTAAAATCTCAAAATGATATGCCG 58.648 34.615 0.00 0.00 0.00 5.69
723 778 6.578545 CGTAAAATCTCAAAATGATATGCCGG 59.421 38.462 0.00 0.00 0.00 6.13
724 779 4.510038 AATCTCAAAATGATATGCCGGC 57.490 40.909 22.73 22.73 0.00 6.13
725 780 3.213206 TCTCAAAATGATATGCCGGCT 57.787 42.857 29.70 15.76 0.00 5.52
726 781 3.141398 TCTCAAAATGATATGCCGGCTC 58.859 45.455 29.70 17.89 0.00 4.70
727 782 2.880268 CTCAAAATGATATGCCGGCTCA 59.120 45.455 29.70 23.34 0.00 4.26
728 783 2.880268 TCAAAATGATATGCCGGCTCAG 59.120 45.455 29.70 11.05 0.00 3.35
729 784 2.620115 CAAAATGATATGCCGGCTCAGT 59.380 45.455 29.70 19.53 0.00 3.41
730 785 2.175878 AATGATATGCCGGCTCAGTC 57.824 50.000 29.70 19.55 0.00 3.51
731 786 1.346062 ATGATATGCCGGCTCAGTCT 58.654 50.000 29.70 5.43 0.00 3.24
732 787 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
733 788 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
734 789 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
735 790 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
736 791 3.134792 GCCGGCTCAGTCTCTCGA 61.135 66.667 22.15 0.00 0.00 4.04
737 792 2.701780 GCCGGCTCAGTCTCTCGAA 61.702 63.158 22.15 0.00 0.00 3.71
738 793 1.883732 CCGGCTCAGTCTCTCGAAA 59.116 57.895 0.00 0.00 0.00 3.46
739 794 0.179150 CCGGCTCAGTCTCTCGAAAG 60.179 60.000 0.00 0.00 0.00 2.62
740 795 0.523966 CGGCTCAGTCTCTCGAAAGT 59.476 55.000 0.00 0.00 0.00 2.66
741 796 1.730772 CGGCTCAGTCTCTCGAAAGTG 60.731 57.143 0.00 0.00 0.00 3.16
742 797 1.271102 GGCTCAGTCTCTCGAAAGTGT 59.729 52.381 0.00 0.00 0.00 3.55
743 798 2.288518 GGCTCAGTCTCTCGAAAGTGTT 60.289 50.000 0.00 0.00 0.00 3.32
744 799 2.983803 GCTCAGTCTCTCGAAAGTGTTC 59.016 50.000 0.00 0.00 0.00 3.18
745 800 3.551046 GCTCAGTCTCTCGAAAGTGTTCA 60.551 47.826 0.00 0.00 32.89 3.18
746 801 4.804108 CTCAGTCTCTCGAAAGTGTTCAT 58.196 43.478 0.00 0.00 32.89 2.57
747 802 5.620205 GCTCAGTCTCTCGAAAGTGTTCATA 60.620 44.000 0.00 0.00 32.89 2.15
748 803 5.944013 TCAGTCTCTCGAAAGTGTTCATAG 58.056 41.667 0.00 0.00 32.89 2.23
749 804 5.098893 CAGTCTCTCGAAAGTGTTCATAGG 58.901 45.833 0.00 0.00 32.89 2.57
750 805 4.158764 AGTCTCTCGAAAGTGTTCATAGGG 59.841 45.833 0.00 0.00 32.89 3.53
751 806 3.447586 TCTCTCGAAAGTGTTCATAGGGG 59.552 47.826 0.00 0.00 32.89 4.79
752 807 3.170717 TCTCGAAAGTGTTCATAGGGGT 58.829 45.455 0.00 0.00 32.89 4.95
753 808 4.346730 TCTCGAAAGTGTTCATAGGGGTA 58.653 43.478 0.00 0.00 32.89 3.69
754 809 4.401519 TCTCGAAAGTGTTCATAGGGGTAG 59.598 45.833 0.00 0.00 32.89 3.18
755 810 3.449737 TCGAAAGTGTTCATAGGGGTAGG 59.550 47.826 0.00 0.00 32.89 3.18
756 811 3.431766 CGAAAGTGTTCATAGGGGTAGGG 60.432 52.174 0.00 0.00 32.89 3.53
757 812 2.963654 AGTGTTCATAGGGGTAGGGT 57.036 50.000 0.00 0.00 0.00 4.34
758 813 2.478292 AGTGTTCATAGGGGTAGGGTG 58.522 52.381 0.00 0.00 0.00 4.61
759 814 2.193993 GTGTTCATAGGGGTAGGGTGT 58.806 52.381 0.00 0.00 0.00 4.16
760 815 2.093128 GTGTTCATAGGGGTAGGGTGTG 60.093 54.545 0.00 0.00 0.00 3.82
761 816 1.134189 GTTCATAGGGGTAGGGTGTGC 60.134 57.143 0.00 0.00 0.00 4.57
762 817 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
763 818 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
764 819 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
765 820 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
766 821 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
767 822 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
768 823 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
769 824 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
772 827 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
773 828 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
774 829 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
775 830 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
776 831 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
777 832 0.233590 GTGCGTGTGTGCGTTCATAA 59.766 50.000 0.00 0.00 37.81 1.90
778 833 0.510790 TGCGTGTGTGCGTTCATAAG 59.489 50.000 0.00 0.00 37.81 1.73
779 834 0.179225 GCGTGTGTGCGTTCATAAGG 60.179 55.000 0.00 0.00 0.00 2.69
780 835 0.442310 CGTGTGTGCGTTCATAAGGG 59.558 55.000 0.00 0.00 0.00 3.95
781 836 1.519408 GTGTGTGCGTTCATAAGGGT 58.481 50.000 0.00 0.00 0.00 4.34
782 837 1.196808 GTGTGTGCGTTCATAAGGGTG 59.803 52.381 0.00 0.00 0.00 4.61
783 838 1.070914 TGTGTGCGTTCATAAGGGTGA 59.929 47.619 0.00 0.00 0.00 4.02
784 839 1.732259 GTGTGCGTTCATAAGGGTGAG 59.268 52.381 0.00 0.00 0.00 3.51
785 840 1.346395 TGTGCGTTCATAAGGGTGAGT 59.654 47.619 0.00 0.00 0.00 3.41
786 841 1.732259 GTGCGTTCATAAGGGTGAGTG 59.268 52.381 0.00 0.00 0.00 3.51
787 842 1.346395 TGCGTTCATAAGGGTGAGTGT 59.654 47.619 0.00 0.00 0.00 3.55
788 843 2.563620 TGCGTTCATAAGGGTGAGTGTA 59.436 45.455 0.00 0.00 0.00 2.90
789 844 3.196901 TGCGTTCATAAGGGTGAGTGTAT 59.803 43.478 0.00 0.00 0.00 2.29
790 845 3.555956 GCGTTCATAAGGGTGAGTGTATG 59.444 47.826 0.00 0.00 0.00 2.39
791 846 3.555956 CGTTCATAAGGGTGAGTGTATGC 59.444 47.826 0.00 0.00 0.00 3.14
792 847 3.452755 TCATAAGGGTGAGTGTATGCG 57.547 47.619 0.00 0.00 0.00 4.73
793 848 1.867233 CATAAGGGTGAGTGTATGCGC 59.133 52.381 0.00 0.00 0.00 6.09
794 849 0.179121 TAAGGGTGAGTGTATGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
795 850 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
796 851 1.740296 GGGTGAGTGTATGCGCGTT 60.740 57.895 7.78 0.00 0.00 4.84
797 852 1.296056 GGGTGAGTGTATGCGCGTTT 61.296 55.000 7.78 0.00 0.00 3.60
798 853 1.352114 GGTGAGTGTATGCGCGTTTA 58.648 50.000 7.78 0.00 0.00 2.01
799 854 1.931172 GGTGAGTGTATGCGCGTTTAT 59.069 47.619 7.78 2.74 0.00 1.40
800 855 3.117794 GGTGAGTGTATGCGCGTTTATA 58.882 45.455 7.78 1.67 0.00 0.98
801 856 3.739300 GGTGAGTGTATGCGCGTTTATAT 59.261 43.478 7.78 0.00 0.00 0.86
802 857 4.376008 GGTGAGTGTATGCGCGTTTATATG 60.376 45.833 7.78 0.00 0.00 1.78
803 858 4.443063 GTGAGTGTATGCGCGTTTATATGA 59.557 41.667 7.78 0.00 0.00 2.15
804 859 4.679654 TGAGTGTATGCGCGTTTATATGAG 59.320 41.667 7.78 0.00 0.00 2.90
805 860 3.428870 AGTGTATGCGCGTTTATATGAGC 59.571 43.478 7.78 0.00 36.72 4.26
810 865 1.924408 CGCGTTTATATGAGCGCTTG 58.076 50.000 22.51 7.90 46.56 4.01
811 866 1.663494 GCGTTTATATGAGCGCTTGC 58.337 50.000 19.08 0.00 45.48 4.01
812 867 1.924408 CGTTTATATGAGCGCTTGCG 58.076 50.000 13.26 10.90 45.69 4.85
813 868 1.663494 GTTTATATGAGCGCTTGCGC 58.337 50.000 29.21 29.21 45.69 6.09
846 901 6.380079 AAAAGATAGTTCCCACTCATGACT 57.620 37.500 0.00 0.00 34.06 3.41
847 902 6.380079 AAAGATAGTTCCCACTCATGACTT 57.620 37.500 0.00 0.00 34.06 3.01
848 903 7.496346 AAAGATAGTTCCCACTCATGACTTA 57.504 36.000 0.00 0.00 34.06 2.24
849 904 6.472686 AGATAGTTCCCACTCATGACTTAC 57.527 41.667 0.00 0.00 34.06 2.34
850 905 6.198639 AGATAGTTCCCACTCATGACTTACT 58.801 40.000 0.00 0.00 34.06 2.24
851 906 4.810191 AGTTCCCACTCATGACTTACTC 57.190 45.455 0.00 0.00 0.00 2.59
852 907 3.193691 AGTTCCCACTCATGACTTACTCG 59.806 47.826 0.00 0.00 0.00 4.18
853 908 2.803956 TCCCACTCATGACTTACTCGT 58.196 47.619 0.00 0.00 0.00 4.18
854 909 3.959293 TCCCACTCATGACTTACTCGTA 58.041 45.455 0.00 0.00 0.00 3.43
888 943 3.558931 ACGATGTCCCTTGATGCAATA 57.441 42.857 0.00 0.00 0.00 1.90
971 1030 3.287312 CTCTCGCTCAGAGGATTGATC 57.713 52.381 0.00 0.00 44.75 2.92
972 1031 1.606189 TCTCGCTCAGAGGATTGATCG 59.394 52.381 0.00 0.00 46.82 3.69
973 1032 1.606189 CTCGCTCAGAGGATTGATCGA 59.394 52.381 0.00 0.00 41.65 3.59
983 1042 1.270041 GGATTGATCGAGGAGCTCCAC 60.270 57.143 33.90 26.63 38.89 4.02
1044 1103 3.394719 GTTTTCCGTGAGCTTCTTCTCT 58.605 45.455 0.00 0.00 34.29 3.10
1048 1107 1.074752 CGTGAGCTTCTTCTCTTGCC 58.925 55.000 0.00 0.00 34.29 4.52
1063 1122 0.813610 TTGCCACCTGACGTCTGTTG 60.814 55.000 17.92 14.73 0.00 3.33
1082 1141 2.366435 TTCCCTAGCTTCCCCCGG 60.366 66.667 0.00 0.00 0.00 5.73
1161 1226 1.055040 AGAGCTCCAGCAACTTCACT 58.945 50.000 10.93 0.00 45.16 3.41
1351 1416 3.807538 GCCTGTCGTACCGCTCGA 61.808 66.667 0.00 0.00 34.91 4.04
1616 1684 1.134530 GACAAGATCGTCGACGCCAG 61.135 60.000 32.19 21.69 39.60 4.85
1830 1898 4.377708 AGATGGCAGCACGTCGCA 62.378 61.111 5.19 0.00 46.13 5.10
1875 1943 4.196193 CCATAAGGGTGATCGTAAAGCAA 58.804 43.478 0.00 0.00 0.00 3.91
1900 1968 3.710722 AGGCTCTGTTCCAGGCCG 61.711 66.667 14.11 0.00 45.61 6.13
1942 2010 3.295304 CTGGTGGCGACGATGGACA 62.295 63.158 0.00 0.00 0.00 4.02
1954 2022 0.036388 GATGGACAAGCAGTTCCCGA 60.036 55.000 0.00 0.00 0.00 5.14
2217 2288 2.124736 CACGGCGGGTTCATGGAT 60.125 61.111 13.24 0.00 0.00 3.41
2368 2448 3.490031 TTCATGGGGCAGCACGTGT 62.490 57.895 18.38 0.68 0.00 4.49
2545 2637 2.985139 CCGACGAACTACTTCAGAAACC 59.015 50.000 0.00 0.00 0.00 3.27
2576 2668 2.583593 GCCGCTGATGGAGACGAC 60.584 66.667 0.00 0.00 0.00 4.34
2638 2730 5.910166 CGAGAGGTATCAGACGAATTAACAG 59.090 44.000 0.00 0.00 0.00 3.16
2640 2732 7.254692 CGAGAGGTATCAGACGAATTAACAGTA 60.255 40.741 0.00 0.00 0.00 2.74
2654 2746 7.009265 CGAATTAACAGTACGATCTTGATGTGT 59.991 37.037 0.00 0.00 0.00 3.72
2655 2747 6.944557 TTAACAGTACGATCTTGATGTGTG 57.055 37.500 0.00 0.00 0.00 3.82
2674 2766 5.239963 TGTGTGTACTACAAGTCGAGATCAA 59.760 40.000 0.00 0.00 41.89 2.57
2730 2822 5.595952 ACCATCATATTTTGGGCTTCTTCTC 59.404 40.000 5.82 0.00 37.32 2.87
2774 2868 3.661944 TCATTTGCAAAAATCACCGCAT 58.338 36.364 17.19 0.00 33.71 4.73
2786 2880 5.751243 AATCACCGCATATTCAGTAAACC 57.249 39.130 0.00 0.00 0.00 3.27
2837 2937 3.418047 ACCCCGTTTAATCACTTTCTGG 58.582 45.455 0.00 0.00 0.00 3.86
2859 2960 4.563580 GGCAAGTGAGACCAGAATGTAAGA 60.564 45.833 0.00 0.00 0.00 2.10
2891 2992 6.149129 TGGCAACATATTAAAACACACACA 57.851 33.333 0.00 0.00 46.17 3.72
2931 3035 0.756815 GCAATAAGGCCCTCCCCTTG 60.757 60.000 0.00 0.00 44.68 3.61
2932 3036 0.756815 CAATAAGGCCCTCCCCTTGC 60.757 60.000 0.00 0.00 44.68 4.01
3030 3211 0.833834 CTGTCAGACACACCCCTCCT 60.834 60.000 0.00 0.00 0.00 3.69
3048 3229 0.389391 CTATCGCCGGAGACCATTGT 59.611 55.000 11.10 0.00 0.00 2.71
3168 3671 1.380785 CTCCACCAGCCATGCCATT 60.381 57.895 0.00 0.00 0.00 3.16
3212 3715 2.034066 CTGCTCGGGGCCTTGAAA 59.966 61.111 0.84 0.00 40.92 2.69
3263 3812 2.484928 CGCCTCTGCCATCTCTCGA 61.485 63.158 0.00 0.00 0.00 4.04
3284 3833 4.124351 CGCCTAGGCCGTTCGACA 62.124 66.667 28.09 0.00 37.98 4.35
3299 3848 2.603473 ACACCCAGGAGCGTGCTA 60.603 61.111 0.00 0.00 33.09 3.49
3432 3984 1.592669 GATGTGGCGTGCGCTAGAT 60.593 57.895 16.21 13.95 38.22 1.98
3481 4033 4.664677 GGCTCACGGCGACAGTGT 62.665 66.667 16.62 0.00 42.94 3.55
3484 4036 3.848347 CTCACGGCGACAGTGTGCT 62.848 63.158 16.62 0.00 40.28 4.40
3495 4047 4.648626 GTGTGCTGCTGGCCCTCA 62.649 66.667 0.00 0.00 40.92 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.952010 GATACCCCGCACGTTGTTGT 60.952 55.000 0.00 0.00 0.00 3.32
26 27 2.234300 ACTAAATGATACCCCGCACG 57.766 50.000 0.00 0.00 0.00 5.34
57 58 4.837093 ACCCGATCTTTCTTCCATGTAA 57.163 40.909 0.00 0.00 0.00 2.41
136 138 6.862209 TGGAATATTTTGTGCATGGTAGAAC 58.138 36.000 0.00 0.00 0.00 3.01
150 152 5.163290 TGTGGATGCATGCATGGAATATTTT 60.163 36.000 36.73 10.61 36.70 1.82
175 177 1.115467 ATGCCAAACCGGTGAAACAA 58.885 45.000 8.52 0.00 39.98 2.83
213 215 6.756542 TCGTGACCACATATATTTTGTCTCAG 59.243 38.462 5.10 0.65 0.00 3.35
281 283 9.930693 TGGTAGACAACAAAACATTAAACTTTT 57.069 25.926 0.00 0.00 0.00 2.27
327 356 2.163412 TGTACCAGCGAATTCATTTGGC 59.837 45.455 15.89 6.90 39.17 4.52
329 358 4.418013 TGTGTACCAGCGAATTCATTTG 57.582 40.909 6.22 0.37 0.00 2.32
339 368 3.188254 TGATGTTTCATTGTGTACCAGCG 59.812 43.478 0.00 0.00 0.00 5.18
368 397 7.284944 TGTTACCTTTTCCCGTTATTTCAAAGA 59.715 33.333 0.00 0.00 0.00 2.52
380 409 8.732531 TGTAAGATATTTTGTTACCTTTTCCCG 58.267 33.333 0.00 0.00 0.00 5.14
437 468 5.306678 TGCCACCCATGTTTTCTAAAAGAAT 59.693 36.000 0.00 0.00 33.67 2.40
439 470 4.038642 GTGCCACCCATGTTTTCTAAAAGA 59.961 41.667 0.00 0.00 0.00 2.52
440 471 4.306600 GTGCCACCCATGTTTTCTAAAAG 58.693 43.478 0.00 0.00 0.00 2.27
523 578 2.768253 AGATTGGTTCGCATGAGTGA 57.232 45.000 0.00 0.00 0.00 3.41
538 593 5.711976 CACCTAACCATCTCAACCAAAGATT 59.288 40.000 0.00 0.00 31.05 2.40
539 594 5.256474 CACCTAACCATCTCAACCAAAGAT 58.744 41.667 0.00 0.00 33.74 2.40
540 595 4.506625 CCACCTAACCATCTCAACCAAAGA 60.507 45.833 0.00 0.00 0.00 2.52
541 596 3.758554 CCACCTAACCATCTCAACCAAAG 59.241 47.826 0.00 0.00 0.00 2.77
542 597 3.396276 TCCACCTAACCATCTCAACCAAA 59.604 43.478 0.00 0.00 0.00 3.28
543 598 2.983192 TCCACCTAACCATCTCAACCAA 59.017 45.455 0.00 0.00 0.00 3.67
544 599 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
545 600 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
546 601 3.008049 ACTGTCCACCTAACCATCTCAAC 59.992 47.826 0.00 0.00 0.00 3.18
547 602 3.007940 CACTGTCCACCTAACCATCTCAA 59.992 47.826 0.00 0.00 0.00 3.02
548 603 2.567169 CACTGTCCACCTAACCATCTCA 59.433 50.000 0.00 0.00 0.00 3.27
549 604 2.093447 CCACTGTCCACCTAACCATCTC 60.093 54.545 0.00 0.00 0.00 2.75
550 605 1.909302 CCACTGTCCACCTAACCATCT 59.091 52.381 0.00 0.00 0.00 2.90
551 606 1.628846 ACCACTGTCCACCTAACCATC 59.371 52.381 0.00 0.00 0.00 3.51
552 607 1.742308 ACCACTGTCCACCTAACCAT 58.258 50.000 0.00 0.00 0.00 3.55
553 608 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
554 609 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
555 610 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
580 635 1.895131 CCAGAATTTGAACCCTGGTGG 59.105 52.381 0.00 0.00 40.84 4.61
584 639 2.229784 GAGCACCAGAATTTGAACCCTG 59.770 50.000 0.00 0.00 0.00 4.45
585 640 2.519013 GAGCACCAGAATTTGAACCCT 58.481 47.619 0.00 0.00 0.00 4.34
586 641 1.200020 CGAGCACCAGAATTTGAACCC 59.800 52.381 0.00 0.00 0.00 4.11
587 642 1.401539 GCGAGCACCAGAATTTGAACC 60.402 52.381 0.00 0.00 0.00 3.62
588 643 1.266718 TGCGAGCACCAGAATTTGAAC 59.733 47.619 0.00 0.00 0.00 3.18
589 644 1.603456 TGCGAGCACCAGAATTTGAA 58.397 45.000 0.00 0.00 0.00 2.69
590 645 1.825090 ATGCGAGCACCAGAATTTGA 58.175 45.000 0.00 0.00 0.00 2.69
591 646 2.642139 AATGCGAGCACCAGAATTTG 57.358 45.000 0.00 0.00 0.00 2.32
592 647 4.202050 GGATAAATGCGAGCACCAGAATTT 60.202 41.667 0.00 0.00 0.00 1.82
593 648 3.316308 GGATAAATGCGAGCACCAGAATT 59.684 43.478 0.00 0.00 0.00 2.17
594 649 2.880890 GGATAAATGCGAGCACCAGAAT 59.119 45.455 0.00 0.00 0.00 2.40
595 650 2.092968 AGGATAAATGCGAGCACCAGAA 60.093 45.455 0.00 0.00 0.00 3.02
596 651 1.486310 AGGATAAATGCGAGCACCAGA 59.514 47.619 0.00 0.00 0.00 3.86
597 652 1.600957 CAGGATAAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
598 653 1.667236 CAGGATAAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
599 654 0.947244 CCAGGATAAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
600 655 1.953559 TCCAGGATAAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
601 656 2.936919 ATCCAGGATAAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
602 657 5.886960 ATAAATCCAGGATAAATGCGAGC 57.113 39.130 1.02 0.00 0.00 5.03
603 658 7.874940 TGAAATAAATCCAGGATAAATGCGAG 58.125 34.615 1.02 0.00 0.00 5.03
604 659 7.815840 TGAAATAAATCCAGGATAAATGCGA 57.184 32.000 1.02 0.00 0.00 5.10
614 669 6.585416 CCCAAATTCCTGAAATAAATCCAGG 58.415 40.000 0.00 0.00 46.64 4.45
615 670 6.051074 GCCCAAATTCCTGAAATAAATCCAG 58.949 40.000 0.00 0.00 0.00 3.86
616 671 5.395103 CGCCCAAATTCCTGAAATAAATCCA 60.395 40.000 0.00 0.00 0.00 3.41
617 672 5.049828 CGCCCAAATTCCTGAAATAAATCC 58.950 41.667 0.00 0.00 0.00 3.01
618 673 5.901552 TCGCCCAAATTCCTGAAATAAATC 58.098 37.500 0.00 0.00 0.00 2.17
619 674 5.930837 TCGCCCAAATTCCTGAAATAAAT 57.069 34.783 0.00 0.00 0.00 1.40
620 675 5.930837 ATCGCCCAAATTCCTGAAATAAA 57.069 34.783 0.00 0.00 0.00 1.40
621 676 5.008217 CGTATCGCCCAAATTCCTGAAATAA 59.992 40.000 0.00 0.00 0.00 1.40
622 677 4.513692 CGTATCGCCCAAATTCCTGAAATA 59.486 41.667 0.00 0.00 0.00 1.40
623 678 3.315191 CGTATCGCCCAAATTCCTGAAAT 59.685 43.478 0.00 0.00 0.00 2.17
624 679 2.680841 CGTATCGCCCAAATTCCTGAAA 59.319 45.455 0.00 0.00 0.00 2.69
625 680 2.285083 CGTATCGCCCAAATTCCTGAA 58.715 47.619 0.00 0.00 0.00 3.02
626 681 1.948104 CGTATCGCCCAAATTCCTGA 58.052 50.000 0.00 0.00 0.00 3.86
639 694 1.560923 CTCCCACTGAAAGCGTATCG 58.439 55.000 0.00 0.00 37.60 2.92
640 695 1.480954 TCCTCCCACTGAAAGCGTATC 59.519 52.381 0.00 0.00 37.60 2.24
641 696 1.482593 CTCCTCCCACTGAAAGCGTAT 59.517 52.381 0.00 0.00 37.60 3.06
642 697 0.895530 CTCCTCCCACTGAAAGCGTA 59.104 55.000 0.00 0.00 37.60 4.42
643 698 0.832135 TCTCCTCCCACTGAAAGCGT 60.832 55.000 0.00 0.00 37.60 5.07
644 699 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
645 700 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
646 701 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
647 702 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
648 703 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
649 704 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
650 705 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
651 706 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
673 728 1.367659 ACTGTAGGCGACTCGTAGTC 58.632 55.000 0.00 5.30 43.67 2.59
674 729 2.675348 GTTACTGTAGGCGACTCGTAGT 59.325 50.000 0.00 0.00 43.67 2.73
675 730 2.935201 AGTTACTGTAGGCGACTCGTAG 59.065 50.000 0.00 0.00 43.67 3.51
676 731 2.977914 AGTTACTGTAGGCGACTCGTA 58.022 47.619 0.00 0.00 43.67 3.43
677 732 1.818642 AGTTACTGTAGGCGACTCGT 58.181 50.000 0.00 0.00 43.67 4.18
678 733 2.783333 GAAGTTACTGTAGGCGACTCG 58.217 52.381 0.00 0.00 43.67 4.18
679 734 2.161211 ACGAAGTTACTGTAGGCGACTC 59.839 50.000 0.00 0.00 37.78 3.36
680 735 2.157738 ACGAAGTTACTGTAGGCGACT 58.842 47.619 0.00 0.00 37.78 4.18
681 736 2.626088 ACGAAGTTACTGTAGGCGAC 57.374 50.000 0.00 0.00 37.78 5.19
682 737 4.764679 TTTACGAAGTTACTGTAGGCGA 57.235 40.909 0.00 0.00 37.78 5.54
683 738 5.803967 AGATTTTACGAAGTTACTGTAGGCG 59.196 40.000 0.00 0.00 37.78 5.52
684 739 6.810182 TGAGATTTTACGAAGTTACTGTAGGC 59.190 38.462 0.00 0.00 37.78 3.93
685 740 8.752766 TTGAGATTTTACGAAGTTACTGTAGG 57.247 34.615 0.00 0.00 37.78 3.18
688 743 9.878599 CATTTTGAGATTTTACGAAGTTACTGT 57.121 29.630 0.00 0.00 37.78 3.55
695 750 9.173939 GGCATATCATTTTGAGATTTTACGAAG 57.826 33.333 0.00 0.00 0.00 3.79
696 751 7.855409 CGGCATATCATTTTGAGATTTTACGAA 59.145 33.333 0.00 0.00 0.00 3.85
697 752 7.351981 CGGCATATCATTTTGAGATTTTACGA 58.648 34.615 0.00 0.00 0.00 3.43
698 753 6.578545 CCGGCATATCATTTTGAGATTTTACG 59.421 38.462 0.00 0.00 0.00 3.18
699 754 6.363357 GCCGGCATATCATTTTGAGATTTTAC 59.637 38.462 24.80 0.00 0.00 2.01
700 755 6.265196 AGCCGGCATATCATTTTGAGATTTTA 59.735 34.615 31.54 0.00 0.00 1.52
701 756 5.069516 AGCCGGCATATCATTTTGAGATTTT 59.930 36.000 31.54 0.00 0.00 1.82
702 757 4.586001 AGCCGGCATATCATTTTGAGATTT 59.414 37.500 31.54 0.00 0.00 2.17
703 758 4.147321 AGCCGGCATATCATTTTGAGATT 58.853 39.130 31.54 0.00 0.00 2.40
704 759 3.755378 GAGCCGGCATATCATTTTGAGAT 59.245 43.478 31.54 0.06 0.00 2.75
705 760 3.141398 GAGCCGGCATATCATTTTGAGA 58.859 45.455 31.54 0.00 0.00 3.27
706 761 2.880268 TGAGCCGGCATATCATTTTGAG 59.120 45.455 31.54 0.00 0.00 3.02
707 762 2.880268 CTGAGCCGGCATATCATTTTGA 59.120 45.455 31.54 0.00 0.00 2.69
708 763 2.620115 ACTGAGCCGGCATATCATTTTG 59.380 45.455 31.54 13.72 0.00 2.44
709 764 2.880890 GACTGAGCCGGCATATCATTTT 59.119 45.455 31.54 10.68 0.00 1.82
710 765 2.105477 AGACTGAGCCGGCATATCATTT 59.895 45.455 31.54 13.22 0.00 2.32
711 766 1.696336 AGACTGAGCCGGCATATCATT 59.304 47.619 31.54 17.84 0.00 2.57
712 767 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
713 768 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
714 769 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
715 770 0.965439 GAGAGACTGAGCCGGCATAT 59.035 55.000 31.54 8.11 0.00 1.78
716 771 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
717 772 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
718 773 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
719 774 2.214181 TTTCGAGAGACTGAGCCGGC 62.214 60.000 21.89 21.89 41.84 6.13
720 775 0.179150 CTTTCGAGAGACTGAGCCGG 60.179 60.000 0.00 0.00 41.84 6.13
721 776 0.523966 ACTTTCGAGAGACTGAGCCG 59.476 55.000 10.37 0.00 41.84 5.52
722 777 1.271102 ACACTTTCGAGAGACTGAGCC 59.729 52.381 10.37 0.00 41.84 4.70
723 778 2.715737 ACACTTTCGAGAGACTGAGC 57.284 50.000 10.37 0.00 41.84 4.26
724 779 4.230314 TGAACACTTTCGAGAGACTGAG 57.770 45.455 10.37 0.00 41.84 3.35
725 780 4.855715 ATGAACACTTTCGAGAGACTGA 57.144 40.909 10.37 0.00 41.84 3.41
726 781 5.098893 CCTATGAACACTTTCGAGAGACTG 58.901 45.833 10.37 0.94 41.84 3.51
727 782 4.158764 CCCTATGAACACTTTCGAGAGACT 59.841 45.833 10.37 0.00 41.84 3.24
728 783 4.425520 CCCTATGAACACTTTCGAGAGAC 58.574 47.826 10.37 0.00 41.84 3.36
729 784 3.447586 CCCCTATGAACACTTTCGAGAGA 59.552 47.826 10.37 0.00 34.04 3.10
730 785 3.195825 ACCCCTATGAACACTTTCGAGAG 59.804 47.826 0.58 0.58 34.04 3.20
731 786 3.170717 ACCCCTATGAACACTTTCGAGA 58.829 45.455 0.00 0.00 34.04 4.04
732 787 3.611766 ACCCCTATGAACACTTTCGAG 57.388 47.619 0.00 0.00 34.04 4.04
733 788 3.449737 CCTACCCCTATGAACACTTTCGA 59.550 47.826 0.00 0.00 34.04 3.71
734 789 3.431766 CCCTACCCCTATGAACACTTTCG 60.432 52.174 0.00 0.00 34.04 3.46
735 790 3.522343 ACCCTACCCCTATGAACACTTTC 59.478 47.826 0.00 0.00 0.00 2.62
736 791 3.265995 CACCCTACCCCTATGAACACTTT 59.734 47.826 0.00 0.00 0.00 2.66
737 792 2.844348 CACCCTACCCCTATGAACACTT 59.156 50.000 0.00 0.00 0.00 3.16
738 793 2.225805 ACACCCTACCCCTATGAACACT 60.226 50.000 0.00 0.00 0.00 3.55
739 794 2.093128 CACACCCTACCCCTATGAACAC 60.093 54.545 0.00 0.00 0.00 3.32
740 795 2.193127 CACACCCTACCCCTATGAACA 58.807 52.381 0.00 0.00 0.00 3.18
741 796 1.134189 GCACACCCTACCCCTATGAAC 60.134 57.143 0.00 0.00 0.00 3.18
742 797 1.209621 GCACACCCTACCCCTATGAA 58.790 55.000 0.00 0.00 0.00 2.57
743 798 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
744 799 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
745 800 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
746 801 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
747 802 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
748 803 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
749 804 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
750 805 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
751 806 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
752 807 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
755 810 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
756 811 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
757 812 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
758 813 0.233590 TTATGAACGCACACACGCAC 59.766 50.000 0.00 0.00 36.19 5.34
759 814 0.510790 CTTATGAACGCACACACGCA 59.489 50.000 0.00 0.00 36.19 5.24
760 815 0.179225 CCTTATGAACGCACACACGC 60.179 55.000 0.00 0.00 36.19 5.34
761 816 0.442310 CCCTTATGAACGCACACACG 59.558 55.000 0.00 0.00 39.50 4.49
762 817 1.196808 CACCCTTATGAACGCACACAC 59.803 52.381 0.00 0.00 0.00 3.82
763 818 1.070914 TCACCCTTATGAACGCACACA 59.929 47.619 0.00 0.00 0.00 3.72
764 819 1.732259 CTCACCCTTATGAACGCACAC 59.268 52.381 0.00 0.00 0.00 3.82
765 820 1.346395 ACTCACCCTTATGAACGCACA 59.654 47.619 0.00 0.00 0.00 4.57
766 821 1.732259 CACTCACCCTTATGAACGCAC 59.268 52.381 0.00 0.00 0.00 5.34
767 822 1.346395 ACACTCACCCTTATGAACGCA 59.654 47.619 0.00 0.00 0.00 5.24
768 823 2.094762 ACACTCACCCTTATGAACGC 57.905 50.000 0.00 0.00 0.00 4.84
769 824 3.555956 GCATACACTCACCCTTATGAACG 59.444 47.826 0.00 0.00 0.00 3.95
770 825 3.555956 CGCATACACTCACCCTTATGAAC 59.444 47.826 0.00 0.00 0.00 3.18
771 826 3.792401 CGCATACACTCACCCTTATGAA 58.208 45.455 0.00 0.00 0.00 2.57
772 827 2.483013 GCGCATACACTCACCCTTATGA 60.483 50.000 0.30 0.00 0.00 2.15
773 828 1.867233 GCGCATACACTCACCCTTATG 59.133 52.381 0.30 0.00 0.00 1.90
774 829 1.538204 CGCGCATACACTCACCCTTAT 60.538 52.381 8.75 0.00 0.00 1.73
775 830 0.179121 CGCGCATACACTCACCCTTA 60.179 55.000 8.75 0.00 0.00 2.69
776 831 1.447838 CGCGCATACACTCACCCTT 60.448 57.895 8.75 0.00 0.00 3.95
777 832 2.167398 AACGCGCATACACTCACCCT 62.167 55.000 5.73 0.00 0.00 4.34
778 833 1.296056 AAACGCGCATACACTCACCC 61.296 55.000 5.73 0.00 0.00 4.61
779 834 1.352114 TAAACGCGCATACACTCACC 58.648 50.000 5.73 0.00 0.00 4.02
780 835 4.443063 TCATATAAACGCGCATACACTCAC 59.557 41.667 5.73 0.00 0.00 3.51
781 836 4.612943 TCATATAAACGCGCATACACTCA 58.387 39.130 5.73 0.00 0.00 3.41
782 837 4.433022 GCTCATATAAACGCGCATACACTC 60.433 45.833 5.73 0.00 0.00 3.51
783 838 3.428870 GCTCATATAAACGCGCATACACT 59.571 43.478 5.73 0.00 0.00 3.55
784 839 3.718036 CGCTCATATAAACGCGCATACAC 60.718 47.826 5.73 0.00 39.11 2.90
785 840 2.407026 CGCTCATATAAACGCGCATACA 59.593 45.455 5.73 0.00 39.11 2.29
786 841 3.008456 CGCTCATATAAACGCGCATAC 57.992 47.619 5.73 0.00 39.11 2.39
793 848 1.924408 CGCAAGCGCTCATATAAACG 58.076 50.000 12.06 2.00 35.30 3.60
822 877 6.784031 AGTCATGAGTGGGAACTATCTTTTT 58.216 36.000 1.14 0.00 0.00 1.94
823 878 6.380079 AGTCATGAGTGGGAACTATCTTTT 57.620 37.500 1.14 0.00 0.00 2.27
824 879 6.380079 AAGTCATGAGTGGGAACTATCTTT 57.620 37.500 3.18 0.00 0.00 2.52
825 880 6.670027 AGTAAGTCATGAGTGGGAACTATCTT 59.330 38.462 3.18 0.00 0.00 2.40
826 881 6.198639 AGTAAGTCATGAGTGGGAACTATCT 58.801 40.000 3.18 0.00 0.00 1.98
827 882 6.472686 AGTAAGTCATGAGTGGGAACTATC 57.527 41.667 3.18 0.00 0.00 2.08
828 883 5.067936 CGAGTAAGTCATGAGTGGGAACTAT 59.932 44.000 3.18 0.00 0.00 2.12
829 884 4.398358 CGAGTAAGTCATGAGTGGGAACTA 59.602 45.833 3.18 0.00 0.00 2.24
830 885 3.193691 CGAGTAAGTCATGAGTGGGAACT 59.806 47.826 3.18 5.89 0.00 3.01
831 886 3.056749 ACGAGTAAGTCATGAGTGGGAAC 60.057 47.826 3.18 1.10 0.00 3.62
832 887 3.162666 ACGAGTAAGTCATGAGTGGGAA 58.837 45.455 3.18 0.00 0.00 3.97
833 888 2.803956 ACGAGTAAGTCATGAGTGGGA 58.196 47.619 3.18 0.00 0.00 4.37
834 889 3.442625 TGTACGAGTAAGTCATGAGTGGG 59.557 47.826 3.18 0.00 0.00 4.61
835 890 4.696899 TGTACGAGTAAGTCATGAGTGG 57.303 45.455 3.18 0.00 0.00 4.00
836 891 7.044901 CGTTTATGTACGAGTAAGTCATGAGTG 60.045 40.741 3.18 0.00 43.99 3.51
837 892 6.965500 CGTTTATGTACGAGTAAGTCATGAGT 59.035 38.462 0.00 0.00 43.99 3.41
838 893 6.075519 GCGTTTATGTACGAGTAAGTCATGAG 60.076 42.308 0.00 0.00 43.99 2.90
839 894 5.740569 GCGTTTATGTACGAGTAAGTCATGA 59.259 40.000 5.72 0.00 43.99 3.07
840 895 5.513849 TGCGTTTATGTACGAGTAAGTCATG 59.486 40.000 5.72 0.00 43.99 3.07
841 896 5.643664 TGCGTTTATGTACGAGTAAGTCAT 58.356 37.500 5.72 0.00 43.99 3.06
842 897 5.045668 TGCGTTTATGTACGAGTAAGTCA 57.954 39.130 5.72 0.00 43.99 3.41
843 898 5.740569 TGATGCGTTTATGTACGAGTAAGTC 59.259 40.000 5.72 0.00 43.99 3.01
844 899 5.643664 TGATGCGTTTATGTACGAGTAAGT 58.356 37.500 5.72 0.00 43.99 2.24
845 900 6.400422 GTTGATGCGTTTATGTACGAGTAAG 58.600 40.000 5.72 0.00 43.99 2.34
846 901 5.003684 CGTTGATGCGTTTATGTACGAGTAA 59.996 40.000 5.72 0.00 43.99 2.24
847 902 4.496539 CGTTGATGCGTTTATGTACGAGTA 59.503 41.667 5.72 0.00 43.99 2.59
848 903 3.302434 CGTTGATGCGTTTATGTACGAGT 59.698 43.478 5.72 0.00 43.99 4.18
849 904 3.544682 TCGTTGATGCGTTTATGTACGAG 59.455 43.478 5.72 0.00 43.99 4.18
850 905 3.500014 TCGTTGATGCGTTTATGTACGA 58.500 40.909 5.72 0.00 43.99 3.43
851 906 3.892527 TCGTTGATGCGTTTATGTACG 57.107 42.857 0.00 0.00 44.09 3.67
852 907 5.138800 ACATCGTTGATGCGTTTATGTAC 57.861 39.130 6.70 0.00 43.15 2.90
853 908 4.269123 GGACATCGTTGATGCGTTTATGTA 59.731 41.667 6.70 0.00 43.15 2.29
854 909 3.063452 GGACATCGTTGATGCGTTTATGT 59.937 43.478 6.70 0.00 43.15 2.29
969 1028 1.714541 ATGATGTGGAGCTCCTCGAT 58.285 50.000 32.28 22.42 36.82 3.59
970 1029 1.410517 GAATGATGTGGAGCTCCTCGA 59.589 52.381 32.28 19.12 36.82 4.04
971 1030 1.137675 TGAATGATGTGGAGCTCCTCG 59.862 52.381 32.28 0.00 36.82 4.63
972 1031 2.941720 GTTGAATGATGTGGAGCTCCTC 59.058 50.000 32.28 28.45 36.82 3.71
973 1032 2.575279 AGTTGAATGATGTGGAGCTCCT 59.425 45.455 32.28 13.87 36.82 3.69
983 1042 7.532571 TCTGAGCATTGTAAAGTTGAATGATG 58.467 34.615 0.00 0.00 30.03 3.07
1044 1103 0.813610 CAACAGACGTCAGGTGGCAA 60.814 55.000 17.53 0.00 0.00 4.52
1048 1107 0.861837 GAAGCAACAGACGTCAGGTG 59.138 55.000 20.57 20.57 0.00 4.00
1082 1141 2.440980 GGAGGAAGCCATGGCCAC 60.441 66.667 33.14 25.01 43.17 5.01
1161 1226 1.112916 TGGAGGAGAACAGCACGTCA 61.113 55.000 0.00 0.00 0.00 4.35
1698 1766 3.077556 ACGATGCCGAAGCTCCCT 61.078 61.111 0.00 0.00 40.80 4.20
1761 1829 2.489971 GTCTTCCCGATGTTGAACACA 58.510 47.619 0.00 0.00 40.71 3.72
1798 1866 2.928334 CCATCTGGTGAGGATTTCCAG 58.072 52.381 4.30 4.30 46.94 3.86
1803 1871 0.106819 GCTGCCATCTGGTGAGGATT 60.107 55.000 0.00 0.00 37.57 3.01
1875 1943 3.255397 AACAGAGCCTGCTGCCCT 61.255 61.111 0.00 0.00 42.71 5.19
1900 1968 4.143363 GCACGCGCCGAGGTAAAC 62.143 66.667 5.73 0.00 0.00 2.01
1942 2010 1.302832 CCAGCTTCGGGAACTGCTT 60.303 57.895 0.00 0.00 33.03 3.91
1954 2022 2.437359 GCTCGTCATGCCCAGCTT 60.437 61.111 0.00 0.00 0.00 3.74
2037 2105 3.241530 ACTTCCTCCAGCGTGCCA 61.242 61.111 0.00 0.00 0.00 4.92
2072 2140 2.989253 TGAAGGCGCTCGTCCAGA 60.989 61.111 7.64 0.00 0.00 3.86
2576 2668 1.457738 CTAGATCACTTGCGTCGTCG 58.542 55.000 0.00 0.00 40.37 5.12
2638 2730 6.549061 TGTAGTACACACATCAAGATCGTAC 58.451 40.000 0.00 0.00 30.04 3.67
2640 2732 5.638596 TGTAGTACACACATCAAGATCGT 57.361 39.130 0.00 0.00 30.04 3.73
2654 2746 6.310467 GCAAATTGATCTCGACTTGTAGTACA 59.690 38.462 0.00 0.00 0.00 2.90
2655 2747 6.531948 AGCAAATTGATCTCGACTTGTAGTAC 59.468 38.462 0.00 0.00 0.00 2.73
2674 2766 8.662141 GCAATTAACTCATTCATGAAAGCAAAT 58.338 29.630 13.09 6.92 36.18 2.32
2748 2840 5.576384 GCGGTGATTTTTGCAAATGATTAGA 59.424 36.000 13.65 0.00 32.35 2.10
2786 2880 7.834529 CACTTGATCAGTGCTTTTTACAAAAG 58.165 34.615 10.89 4.84 46.70 2.27
2837 2937 4.569943 TCTTACATTCTGGTCTCACTTGC 58.430 43.478 0.00 0.00 0.00 4.01
2844 2944 5.690464 ATCAGCTTCTTACATTCTGGTCT 57.310 39.130 0.00 0.00 0.00 3.85
2859 2960 7.877097 TGTTTTAATATGTTGCCAAATCAGCTT 59.123 29.630 0.00 0.00 0.00 3.74
2882 2983 6.588204 TCTTTTAGATGTAGGTGTGTGTGTT 58.412 36.000 0.00 0.00 0.00 3.32
2891 2992 6.870971 TGCGTTTTTCTTTTAGATGTAGGT 57.129 33.333 0.00 0.00 0.00 3.08
2931 3035 0.595310 GACTGCTCGAGGTTATCCGC 60.595 60.000 15.58 0.00 39.05 5.54
2932 3036 0.030908 GGACTGCTCGAGGTTATCCG 59.969 60.000 15.58 0.00 39.05 4.18
3030 3211 0.387929 GACAATGGTCTCCGGCGATA 59.612 55.000 9.30 0.00 40.99 2.92
3194 3697 2.469465 CTTTCAAGGCCCCGAGCAGA 62.469 60.000 0.00 0.00 46.50 4.26
3251 3800 2.775856 GCGTCCTCGAGAGATGGCA 61.776 63.158 15.71 0.00 40.84 4.92
3278 3827 2.915659 ACGCTCCTGGGTGTCGAA 60.916 61.111 0.00 0.00 37.97 3.71
3284 3833 3.391382 GGTAGCACGCTCCTGGGT 61.391 66.667 0.00 0.00 40.11 4.51
3317 3866 2.594592 GGTTGTGGCGCACCTCTT 60.595 61.111 10.83 0.00 36.63 2.85
3495 4047 2.733593 GACCGTCTTTGCGAGCGT 60.734 61.111 0.00 0.00 0.00 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.