Multiple sequence alignment - TraesCS2A01G542400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G542400 chr2A 100.000 2516 0 0 1 2516 753059911 753062426 0.000000e+00 4647
1 TraesCS2A01G542400 chr2A 91.048 983 60 8 1118 2076 753010879 753011857 0.000000e+00 1303
2 TraesCS2A01G542400 chr2A 89.884 860 65 6 265 1120 753005898 753006739 0.000000e+00 1086
3 TraesCS2A01G542400 chr2A 88.785 535 42 3 271 805 752998052 752998568 7.590000e-180 640
4 TraesCS2A01G542400 chr2A 82.640 697 108 12 835 1526 752996726 752996038 2.770000e-169 604
5 TraesCS2A01G542400 chr2A 97.561 82 2 0 1 82 752997680 752997761 9.380000e-30 141
6 TraesCS2A01G542400 chr2A 93.902 82 5 0 1 82 753005550 753005631 9.450000e-25 124
7 TraesCS2A01G542400 chr2D 90.650 2032 141 14 74 2076 621314710 621316721 0.000000e+00 2654
8 TraesCS2A01G542400 chr2D 91.257 1201 93 8 551 1745 621267066 621268260 0.000000e+00 1626
9 TraesCS2A01G542400 chr2D 88.901 937 75 8 701 1631 621153319 621154232 0.000000e+00 1127
10 TraesCS2A01G542400 chr2D 94.228 693 38 1 1 691 621151165 621151857 0.000000e+00 1057
11 TraesCS2A01G542400 chr2D 82.714 700 100 17 832 1518 621308974 621308283 9.960000e-169 603
12 TraesCS2A01G542400 chr2D 89.796 441 45 0 2076 2516 551934304 551933864 1.310000e-157 566
13 TraesCS2A01G542400 chr2D 89.796 441 44 1 2076 2516 80253302 80252863 4.700000e-157 564
14 TraesCS2A01G542400 chr2D 83.296 449 47 7 1654 2076 621156899 621157345 3.040000e-104 388
15 TraesCS2A01G542400 chr2D 95.872 218 7 1 1 216 621266645 621266862 3.980000e-93 351
16 TraesCS2A01G542400 chr2D 84.226 336 32 9 74 407 621130971 621131287 8.740000e-80 307
17 TraesCS2A01G542400 chr2D 85.714 301 26 3 1741 2024 621303599 621303899 4.070000e-78 302
18 TraesCS2A01G542400 chr2D 90.625 192 17 1 313 503 621266863 621267054 1.160000e-63 254
19 TraesCS2A01G542400 chrUn 89.316 1769 135 27 295 2037 23361964 23360224 0.000000e+00 2170
20 TraesCS2A01G542400 chrUn 90.742 1577 113 15 255 1812 388950108 388951670 0.000000e+00 2073
21 TraesCS2A01G542400 chrUn 81.534 704 119 6 825 1525 307394268 307394963 1.010000e-158 569
22 TraesCS2A01G542400 chrUn 82.941 340 33 11 74 407 307395432 307395112 1.470000e-72 283
23 TraesCS2A01G542400 chrUn 89.671 213 18 4 295 507 329051170 329051378 4.130000e-68 268
24 TraesCS2A01G542400 chr2B 90.727 949 59 11 146 1078 762072792 762073727 0.000000e+00 1238
25 TraesCS2A01G542400 chr2B 81.960 704 116 6 825 1525 762065724 762065029 1.000000e-163 586
26 TraesCS2A01G542400 chr4D 94.118 442 26 0 2075 2516 3354342 3354783 0.000000e+00 673
27 TraesCS2A01G542400 chr4D 92.063 441 35 0 2076 2516 110088514 110088074 2.750000e-174 621
28 TraesCS2A01G542400 chr5D 91.781 438 36 0 2076 2513 407693319 407693756 5.950000e-171 610
29 TraesCS2A01G542400 chr6D 91.156 441 38 1 2076 2516 78860832 78861271 4.630000e-167 597
30 TraesCS2A01G542400 chr6D 90.023 441 44 0 2076 2516 30830230 30829790 2.810000e-159 571
31 TraesCS2A01G542400 chr7A 90.476 441 42 0 2076 2516 436179794 436180234 1.300000e-162 582
32 TraesCS2A01G542400 chr1A 90.183 438 43 0 2076 2513 582286063 582286500 2.810000e-159 571


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G542400 chr2A 753059911 753062426 2515 False 4647.000000 4647 100.000000 1 2516 1 chr2A.!!$F2 2515
1 TraesCS2A01G542400 chr2A 753010879 753011857 978 False 1303.000000 1303 91.048000 1118 2076 1 chr2A.!!$F1 958
2 TraesCS2A01G542400 chr2A 753005550 753006739 1189 False 605.000000 1086 91.893000 1 1120 2 chr2A.!!$F4 1119
3 TraesCS2A01G542400 chr2A 752996038 752996726 688 True 604.000000 604 82.640000 835 1526 1 chr2A.!!$R1 691
4 TraesCS2A01G542400 chr2A 752997680 752998568 888 False 390.500000 640 93.173000 1 805 2 chr2A.!!$F3 804
5 TraesCS2A01G542400 chr2D 621314710 621316721 2011 False 2654.000000 2654 90.650000 74 2076 1 chr2D.!!$F3 2002
6 TraesCS2A01G542400 chr2D 621151165 621157345 6180 False 857.333333 1127 88.808333 1 2076 3 chr2D.!!$F4 2075
7 TraesCS2A01G542400 chr2D 621266645 621268260 1615 False 743.666667 1626 92.584667 1 1745 3 chr2D.!!$F5 1744
8 TraesCS2A01G542400 chr2D 621308283 621308974 691 True 603.000000 603 82.714000 832 1518 1 chr2D.!!$R3 686
9 TraesCS2A01G542400 chrUn 23360224 23361964 1740 True 2170.000000 2170 89.316000 295 2037 1 chrUn.!!$R1 1742
10 TraesCS2A01G542400 chrUn 388950108 388951670 1562 False 2073.000000 2073 90.742000 255 1812 1 chrUn.!!$F3 1557
11 TraesCS2A01G542400 chrUn 307394268 307394963 695 False 569.000000 569 81.534000 825 1525 1 chrUn.!!$F1 700
12 TraesCS2A01G542400 chr2B 762072792 762073727 935 False 1238.000000 1238 90.727000 146 1078 1 chr2B.!!$F1 932
13 TraesCS2A01G542400 chr2B 762065029 762065724 695 True 586.000000 586 81.960000 825 1525 1 chr2B.!!$R1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
652 772 0.321671 GTGAAGCAGTCAGTAGGCCA 59.678 55.0 5.01 0.0 36.74 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2472 6769 0.03601 GATGATATCAGCGGGGTGGG 60.036 60.0 11.78 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
219 279 1.890876 ATTGTACGGCTCAACTTGCA 58.109 45.000 0.00 0.00 0.00 4.08
245 305 5.309323 TGAAAGCTCCATTTTACCGATTG 57.691 39.130 0.00 0.00 0.00 2.67
381 487 7.470841 GCCTTTTAATTTGGAGGTTGTGACTTA 60.471 37.037 0.00 0.00 0.00 2.24
460 567 6.362283 AGTTAGTTGTAACGCAAAATTCATGC 59.638 34.615 6.19 6.19 43.04 4.06
587 694 2.167693 GGGACGTGGATTGTGATAGTCA 59.832 50.000 0.00 0.00 0.00 3.41
652 772 0.321671 GTGAAGCAGTCAGTAGGCCA 59.678 55.000 5.01 0.00 36.74 5.36
653 773 0.610174 TGAAGCAGTCAGTAGGCCAG 59.390 55.000 5.01 0.00 0.00 4.85
654 774 0.742635 GAAGCAGTCAGTAGGCCAGC 60.743 60.000 5.01 0.00 0.00 4.85
655 775 1.483595 AAGCAGTCAGTAGGCCAGCA 61.484 55.000 5.01 0.00 0.00 4.41
656 776 1.449246 GCAGTCAGTAGGCCAGCAG 60.449 63.158 5.01 0.00 0.00 4.24
657 777 1.449246 CAGTCAGTAGGCCAGCAGC 60.449 63.158 5.01 0.00 42.60 5.25
658 778 2.510238 GTCAGTAGGCCAGCAGCG 60.510 66.667 5.01 0.00 45.17 5.18
659 779 2.997315 TCAGTAGGCCAGCAGCGT 60.997 61.111 5.01 0.00 45.17 5.07
660 780 2.816958 CAGTAGGCCAGCAGCGTG 60.817 66.667 5.01 0.00 45.17 5.34
661 781 4.087892 AGTAGGCCAGCAGCGTGG 62.088 66.667 5.01 6.54 45.17 4.94
675 795 2.747686 GTGGCCCGGTCTTCAGAA 59.252 61.111 0.00 0.00 0.00 3.02
695 815 6.711194 TCAGAACTTCCGTCGATCTATTATCT 59.289 38.462 0.00 0.00 0.00 1.98
697 817 7.958567 CAGAACTTCCGTCGATCTATTATCTAC 59.041 40.741 0.00 0.00 0.00 2.59
698 818 7.660617 AGAACTTCCGTCGATCTATTATCTACA 59.339 37.037 0.00 0.00 0.00 2.74
699 819 7.367159 ACTTCCGTCGATCTATTATCTACAG 57.633 40.000 0.00 0.00 0.00 2.74
980 2585 5.394663 GCTTACAATCTCCTCTGCTAGTTCA 60.395 44.000 0.00 0.00 0.00 3.18
981 2586 6.685116 GCTTACAATCTCCTCTGCTAGTTCAT 60.685 42.308 0.00 0.00 0.00 2.57
1033 2647 0.620556 AACCATTCTCCTCGCCATGT 59.379 50.000 0.00 0.00 0.00 3.21
1055 2669 0.394762 GTGATGGCCATCCTGAGCAA 60.395 55.000 36.97 18.12 37.02 3.91
1090 2704 3.210223 TACAACGTCGGCGAGCCAA 62.210 57.895 20.03 0.00 42.00 4.52
1096 2710 4.373116 TCGGCGAGCCAAGTGGTC 62.373 66.667 15.03 0.00 37.57 4.02
1097 2711 4.680237 CGGCGAGCCAAGTGGTCA 62.680 66.667 15.03 0.00 41.69 4.02
1422 3037 1.965930 CCCTAGTGCAAGCAACGCA 60.966 57.895 0.00 0.00 36.94 5.24
1458 3073 0.687757 TCTCAGCCGCCACCTCTATT 60.688 55.000 0.00 0.00 0.00 1.73
1638 3261 8.313292 AGGCTTCAGTTTTGCATATTCATTTTA 58.687 29.630 0.00 0.00 0.00 1.52
1704 5972 0.591170 CGAAACATGTTCGCCAACCT 59.409 50.000 12.39 0.00 35.05 3.50
1755 6025 6.273026 TCATGTCATACCCCTCAATATCACAT 59.727 38.462 0.00 0.00 0.00 3.21
1762 6032 2.104792 CCCTCAATATCACATCACCCGT 59.895 50.000 0.00 0.00 0.00 5.28
1785 6057 7.713507 CCGTTATTTCATATGTAACTTCCCTCA 59.286 37.037 1.90 0.00 0.00 3.86
1812 6084 1.538047 GTGTGTGGCATGAAGGTCAT 58.462 50.000 0.00 0.00 37.65 3.06
1888 6162 1.826054 TGCAACCAACACTTCCCCG 60.826 57.895 0.00 0.00 0.00 5.73
1889 6163 3.039134 CAACCAACACTTCCCCGC 58.961 61.111 0.00 0.00 0.00 6.13
1897 6171 4.740822 ACTTCCCCGCATGTGCCC 62.741 66.667 0.00 0.00 37.91 5.36
1905 6179 0.535780 CCGCATGTGCCCATATCTGT 60.536 55.000 0.00 0.00 37.91 3.41
1913 6190 2.042464 TGCCCATATCTGTCACCTCTC 58.958 52.381 0.00 0.00 0.00 3.20
1919 6196 2.228545 ATCTGTCACCTCTCTGCAGA 57.771 50.000 17.19 17.19 39.98 4.26
1971 6260 5.785243 TCTCATTGCTTGAATTCATTTGCA 58.215 33.333 20.13 20.13 32.78 4.08
1981 6270 0.758310 TTCATTTGCACAGCCCCACA 60.758 50.000 0.00 0.00 0.00 4.17
1984 6273 0.832983 ATTTGCACAGCCCCACACAT 60.833 50.000 0.00 0.00 0.00 3.21
2011 6300 9.894783 ATGCGTACTTTATGTATAGTCAAGTAG 57.105 33.333 0.00 0.00 32.03 2.57
2076 6373 5.518848 TGTTGGAATATGATGGTTGCATC 57.481 39.130 0.00 0.00 0.00 3.91
2077 6374 4.341806 TGTTGGAATATGATGGTTGCATCC 59.658 41.667 6.88 6.88 0.00 3.51
2078 6375 3.148412 TGGAATATGATGGTTGCATCCG 58.852 45.455 9.25 0.00 0.00 4.18
2079 6376 3.181446 TGGAATATGATGGTTGCATCCGA 60.181 43.478 9.25 0.00 0.00 4.55
2080 6377 3.820467 GGAATATGATGGTTGCATCCGAA 59.180 43.478 9.25 0.00 0.00 4.30
2081 6378 4.083110 GGAATATGATGGTTGCATCCGAAG 60.083 45.833 9.25 0.00 0.00 3.79
2099 6396 5.219226 CGAAGGTACTACGCTGGATATAG 57.781 47.826 0.00 0.00 38.49 1.31
2100 6397 4.437121 CGAAGGTACTACGCTGGATATAGC 60.437 50.000 0.00 0.00 38.49 2.97
2101 6398 4.304048 AGGTACTACGCTGGATATAGCT 57.696 45.455 0.00 0.00 38.22 3.32
2102 6399 5.432680 AGGTACTACGCTGGATATAGCTA 57.567 43.478 0.00 0.00 38.22 3.32
2103 6400 5.430007 AGGTACTACGCTGGATATAGCTAG 58.570 45.833 0.00 0.00 38.22 3.42
2104 6401 4.575645 GGTACTACGCTGGATATAGCTAGG 59.424 50.000 3.40 0.00 41.51 3.02
2105 6402 3.622630 ACTACGCTGGATATAGCTAGGG 58.377 50.000 15.37 15.37 41.51 3.53
2106 6403 1.853963 ACGCTGGATATAGCTAGGGG 58.146 55.000 19.84 7.01 41.51 4.79
2107 6404 1.115467 CGCTGGATATAGCTAGGGGG 58.885 60.000 10.10 0.00 41.51 5.40
2108 6405 0.833949 GCTGGATATAGCTAGGGGGC 59.166 60.000 3.40 0.00 40.52 5.80
2109 6406 1.623834 GCTGGATATAGCTAGGGGGCT 60.624 57.143 3.40 0.00 45.29 5.19
2110 6407 2.359355 GCTGGATATAGCTAGGGGGCTA 60.359 54.545 3.40 0.00 46.82 3.93
2116 6413 2.327325 TAGCTAGGGGGCTATGGAAG 57.673 55.000 0.00 0.00 42.97 3.46
2117 6414 0.474660 AGCTAGGGGGCTATGGAAGG 60.475 60.000 0.00 0.00 41.16 3.46
2123 6420 3.558475 GGCTATGGAAGGCCGGTA 58.442 61.111 1.90 0.00 44.97 4.02
2124 6421 2.067197 GGCTATGGAAGGCCGGTAT 58.933 57.895 1.90 0.00 44.97 2.73
2125 6422 0.036294 GGCTATGGAAGGCCGGTATC 60.036 60.000 1.90 0.00 44.97 2.24
2126 6423 0.036294 GCTATGGAAGGCCGGTATCC 60.036 60.000 1.90 9.37 36.79 2.59
2127 6424 0.613777 CTATGGAAGGCCGGTATCCC 59.386 60.000 16.47 8.52 36.79 3.85
2128 6425 0.192566 TATGGAAGGCCGGTATCCCT 59.807 55.000 16.47 6.23 36.79 4.20
2129 6426 1.128188 ATGGAAGGCCGGTATCCCTC 61.128 60.000 16.47 3.73 36.79 4.30
2130 6427 1.459730 GGAAGGCCGGTATCCCTCT 60.460 63.158 1.90 0.00 0.00 3.69
2131 6428 1.473497 GGAAGGCCGGTATCCCTCTC 61.473 65.000 1.90 1.89 0.00 3.20
2132 6429 0.759436 GAAGGCCGGTATCCCTCTCA 60.759 60.000 1.90 0.00 0.00 3.27
2133 6430 0.326238 AAGGCCGGTATCCCTCTCAA 60.326 55.000 1.90 0.00 0.00 3.02
2134 6431 0.326238 AGGCCGGTATCCCTCTCAAA 60.326 55.000 1.90 0.00 0.00 2.69
2135 6432 0.544697 GGCCGGTATCCCTCTCAAAA 59.455 55.000 1.90 0.00 0.00 2.44
2136 6433 1.143073 GGCCGGTATCCCTCTCAAAAT 59.857 52.381 1.90 0.00 0.00 1.82
2137 6434 2.495084 GCCGGTATCCCTCTCAAAATC 58.505 52.381 1.90 0.00 0.00 2.17
2138 6435 2.158813 GCCGGTATCCCTCTCAAAATCA 60.159 50.000 1.90 0.00 0.00 2.57
2139 6436 3.684413 GCCGGTATCCCTCTCAAAATCAA 60.684 47.826 1.90 0.00 0.00 2.57
2140 6437 4.130118 CCGGTATCCCTCTCAAAATCAAG 58.870 47.826 0.00 0.00 0.00 3.02
2141 6438 4.141711 CCGGTATCCCTCTCAAAATCAAGA 60.142 45.833 0.00 0.00 0.00 3.02
2142 6439 5.455326 CCGGTATCCCTCTCAAAATCAAGAT 60.455 44.000 0.00 0.00 0.00 2.40
2143 6440 6.058183 CGGTATCCCTCTCAAAATCAAGATT 58.942 40.000 0.00 0.00 0.00 2.40
2144 6441 6.543831 CGGTATCCCTCTCAAAATCAAGATTT 59.456 38.462 2.31 2.31 42.35 2.17
2146 6443 8.409371 GGTATCCCTCTCAAAATCAAGATTTTC 58.591 37.037 15.74 3.72 46.01 2.29
2147 6444 9.183368 GTATCCCTCTCAAAATCAAGATTTTCT 57.817 33.333 15.74 0.00 46.01 2.52
2148 6445 8.661752 ATCCCTCTCAAAATCAAGATTTTCTT 57.338 30.769 15.74 0.00 46.01 2.52
2162 6459 7.967178 CAAGATTTTCTTGTGGCAAATATTCC 58.033 34.615 8.72 0.00 46.50 3.01
2163 6460 6.332630 AGATTTTCTTGTGGCAAATATTCCG 58.667 36.000 0.00 0.00 0.00 4.30
2164 6461 3.502191 TTCTTGTGGCAAATATTCCGC 57.498 42.857 0.00 2.00 0.00 5.54
2165 6462 2.441410 TCTTGTGGCAAATATTCCGCA 58.559 42.857 10.88 8.32 40.72 5.69
2166 6463 2.423185 TCTTGTGGCAAATATTCCGCAG 59.577 45.455 8.85 5.31 42.94 5.18
2167 6464 1.832883 TGTGGCAAATATTCCGCAGT 58.167 45.000 10.88 0.00 37.89 4.40
2168 6465 1.742831 TGTGGCAAATATTCCGCAGTC 59.257 47.619 10.88 3.16 37.89 3.51
2169 6466 1.013596 TGGCAAATATTCCGCAGTCG 58.986 50.000 10.88 0.00 0.00 4.18
2170 6467 0.317020 GGCAAATATTCCGCAGTCGC 60.317 55.000 10.88 0.00 0.00 5.19
2171 6468 0.657840 GCAAATATTCCGCAGTCGCT 59.342 50.000 5.23 0.00 35.30 4.93
2172 6469 1.064060 GCAAATATTCCGCAGTCGCTT 59.936 47.619 5.23 0.00 35.30 4.68
2173 6470 2.286833 GCAAATATTCCGCAGTCGCTTA 59.713 45.455 5.23 0.00 35.30 3.09
2174 6471 3.844943 GCAAATATTCCGCAGTCGCTTAC 60.845 47.826 5.23 0.00 35.30 2.34
2175 6472 2.150397 ATATTCCGCAGTCGCTTACC 57.850 50.000 0.00 0.00 35.30 2.85
2176 6473 0.818938 TATTCCGCAGTCGCTTACCA 59.181 50.000 0.00 0.00 35.30 3.25
2177 6474 0.036765 ATTCCGCAGTCGCTTACCAA 60.037 50.000 0.00 0.00 35.30 3.67
2178 6475 0.947180 TTCCGCAGTCGCTTACCAAC 60.947 55.000 0.00 0.00 35.30 3.77
2179 6476 2.726691 CCGCAGTCGCTTACCAACG 61.727 63.158 0.00 0.00 35.30 4.10
2180 6477 2.019951 CGCAGTCGCTTACCAACGT 61.020 57.895 0.00 0.00 35.30 3.99
2181 6478 1.779683 GCAGTCGCTTACCAACGTC 59.220 57.895 0.00 0.00 34.30 4.34
2182 6479 0.666577 GCAGTCGCTTACCAACGTCT 60.667 55.000 0.00 0.00 34.30 4.18
2183 6480 1.060713 CAGTCGCTTACCAACGTCTG 58.939 55.000 0.00 0.00 38.62 3.51
2184 6481 0.956633 AGTCGCTTACCAACGTCTGA 59.043 50.000 0.00 0.00 0.00 3.27
2185 6482 1.058404 GTCGCTTACCAACGTCTGAC 58.942 55.000 0.00 0.00 0.00 3.51
2186 6483 0.669619 TCGCTTACCAACGTCTGACA 59.330 50.000 8.73 0.00 0.00 3.58
2187 6484 1.067364 TCGCTTACCAACGTCTGACAA 59.933 47.619 8.73 0.00 0.00 3.18
2188 6485 2.066262 CGCTTACCAACGTCTGACAAT 58.934 47.619 8.73 0.00 0.00 2.71
2189 6486 2.159841 CGCTTACCAACGTCTGACAATG 60.160 50.000 8.73 5.80 0.00 2.82
2190 6487 2.806244 GCTTACCAACGTCTGACAATGT 59.194 45.455 8.73 0.00 0.00 2.71
2191 6488 3.363970 GCTTACCAACGTCTGACAATGTG 60.364 47.826 8.73 0.00 0.00 3.21
2192 6489 1.593196 ACCAACGTCTGACAATGTGG 58.407 50.000 8.73 10.74 0.00 4.17
2193 6490 0.238289 CCAACGTCTGACAATGTGGC 59.762 55.000 8.73 0.00 0.00 5.01
2194 6491 0.238289 CAACGTCTGACAATGTGGCC 59.762 55.000 8.73 0.00 0.00 5.36
2195 6492 0.179032 AACGTCTGACAATGTGGCCA 60.179 50.000 0.00 0.00 0.00 5.36
2196 6493 0.179032 ACGTCTGACAATGTGGCCAA 60.179 50.000 7.24 0.00 0.00 4.52
2197 6494 0.950836 CGTCTGACAATGTGGCCAAA 59.049 50.000 7.24 0.15 0.00 3.28
2198 6495 1.334960 CGTCTGACAATGTGGCCAAAC 60.335 52.381 7.24 0.00 0.00 2.93
2199 6496 0.950836 TCTGACAATGTGGCCAAACG 59.049 50.000 7.24 0.00 0.00 3.60
2200 6497 0.664166 CTGACAATGTGGCCAAACGC 60.664 55.000 7.24 0.00 0.00 4.84
2201 6498 1.361993 GACAATGTGGCCAAACGCA 59.638 52.632 7.24 0.08 40.31 5.24
2202 6499 0.249238 GACAATGTGGCCAAACGCAA 60.249 50.000 7.24 0.00 40.31 4.85
2203 6500 0.392336 ACAATGTGGCCAAACGCAAT 59.608 45.000 7.24 0.00 40.31 3.56
2204 6501 0.791422 CAATGTGGCCAAACGCAATG 59.209 50.000 7.24 0.00 40.31 2.82
2205 6502 0.320596 AATGTGGCCAAACGCAATGG 60.321 50.000 7.24 0.00 40.31 3.16
2206 6503 2.048316 GTGGCCAAACGCAATGGG 60.048 61.111 7.24 0.00 40.31 4.00
2210 6507 4.433877 CCAAACGCAATGGGCCGG 62.434 66.667 0.00 0.00 40.31 6.13
2241 6538 1.579429 GCACCACTTGCGGTTTAGG 59.421 57.895 0.00 0.00 42.79 2.69
2242 6539 1.862602 GCACCACTTGCGGTTTAGGG 61.863 60.000 0.00 0.00 42.79 3.53
2243 6540 1.074248 ACCACTTGCGGTTTAGGGG 59.926 57.895 0.00 0.00 40.92 4.79
2244 6541 1.377229 CCACTTGCGGTTTAGGGGA 59.623 57.895 0.00 0.00 37.09 4.81
2245 6542 0.250989 CCACTTGCGGTTTAGGGGAA 60.251 55.000 0.00 0.00 37.09 3.97
2246 6543 1.611519 CACTTGCGGTTTAGGGGAAA 58.388 50.000 0.00 0.00 0.00 3.13
2247 6544 1.957877 CACTTGCGGTTTAGGGGAAAA 59.042 47.619 0.00 0.00 0.00 2.29
2248 6545 1.958579 ACTTGCGGTTTAGGGGAAAAC 59.041 47.619 0.00 0.00 38.39 2.43
2254 6551 3.671008 GGTTTAGGGGAAAACGCAAAT 57.329 42.857 0.00 0.00 39.71 2.32
2255 6552 3.581755 GGTTTAGGGGAAAACGCAAATC 58.418 45.455 0.00 0.00 39.71 2.17
2256 6553 3.006003 GGTTTAGGGGAAAACGCAAATCA 59.994 43.478 0.00 0.00 39.71 2.57
2257 6554 3.926821 TTAGGGGAAAACGCAAATCAC 57.073 42.857 0.00 0.00 33.80 3.06
2258 6555 1.698506 AGGGGAAAACGCAAATCACA 58.301 45.000 0.00 0.00 33.80 3.58
2259 6556 2.247358 AGGGGAAAACGCAAATCACAT 58.753 42.857 0.00 0.00 33.80 3.21
2260 6557 2.029110 AGGGGAAAACGCAAATCACATG 60.029 45.455 0.00 0.00 33.80 3.21
2261 6558 2.288763 GGGGAAAACGCAAATCACATGT 60.289 45.455 0.00 0.00 0.00 3.21
2262 6559 3.389221 GGGAAAACGCAAATCACATGTT 58.611 40.909 0.00 0.00 0.00 2.71
2263 6560 3.428534 GGGAAAACGCAAATCACATGTTC 59.571 43.478 0.00 0.00 0.00 3.18
2264 6561 4.298332 GGAAAACGCAAATCACATGTTCT 58.702 39.130 0.00 0.00 0.00 3.01
2265 6562 4.744631 GGAAAACGCAAATCACATGTTCTT 59.255 37.500 0.00 0.00 0.00 2.52
2266 6563 5.107875 GGAAAACGCAAATCACATGTTCTTC 60.108 40.000 0.00 0.00 0.00 2.87
2267 6564 3.187478 ACGCAAATCACATGTTCTTCG 57.813 42.857 0.00 0.00 0.00 3.79
2268 6565 2.095768 ACGCAAATCACATGTTCTTCGG 60.096 45.455 0.00 0.00 0.00 4.30
2269 6566 2.159430 CGCAAATCACATGTTCTTCGGA 59.841 45.455 0.00 0.00 0.00 4.55
2270 6567 3.181507 CGCAAATCACATGTTCTTCGGAT 60.182 43.478 0.00 0.00 0.00 4.18
2271 6568 4.100529 GCAAATCACATGTTCTTCGGATG 58.899 43.478 0.00 0.00 0.00 3.51
2272 6569 4.100529 CAAATCACATGTTCTTCGGATGC 58.899 43.478 0.00 0.00 0.00 3.91
2273 6570 1.358877 TCACATGTTCTTCGGATGCG 58.641 50.000 0.00 0.00 0.00 4.73
2274 6571 1.078709 CACATGTTCTTCGGATGCGT 58.921 50.000 6.49 0.00 0.00 5.24
2275 6572 1.078709 ACATGTTCTTCGGATGCGTG 58.921 50.000 6.49 1.12 0.00 5.34
2276 6573 0.247814 CATGTTCTTCGGATGCGTGC 60.248 55.000 6.49 0.00 0.00 5.34
2277 6574 0.391661 ATGTTCTTCGGATGCGTGCT 60.392 50.000 6.49 0.00 0.00 4.40
2278 6575 1.014044 TGTTCTTCGGATGCGTGCTC 61.014 55.000 6.49 0.00 0.00 4.26
2279 6576 1.805539 TTCTTCGGATGCGTGCTCG 60.806 57.895 6.49 3.31 40.37 5.03
2300 6597 2.802816 GCTAGATTTGCGTGGAGTATGG 59.197 50.000 0.00 0.00 0.00 2.74
2301 6598 3.741388 GCTAGATTTGCGTGGAGTATGGT 60.741 47.826 0.00 0.00 0.00 3.55
2302 6599 3.350219 AGATTTGCGTGGAGTATGGTT 57.650 42.857 0.00 0.00 0.00 3.67
2303 6600 4.481368 AGATTTGCGTGGAGTATGGTTA 57.519 40.909 0.00 0.00 0.00 2.85
2304 6601 4.442706 AGATTTGCGTGGAGTATGGTTAG 58.557 43.478 0.00 0.00 0.00 2.34
2305 6602 3.965379 TTTGCGTGGAGTATGGTTAGA 57.035 42.857 0.00 0.00 0.00 2.10
2306 6603 3.520290 TTGCGTGGAGTATGGTTAGAG 57.480 47.619 0.00 0.00 0.00 2.43
2307 6604 2.730382 TGCGTGGAGTATGGTTAGAGA 58.270 47.619 0.00 0.00 0.00 3.10
2308 6605 2.426024 TGCGTGGAGTATGGTTAGAGAC 59.574 50.000 0.00 0.00 0.00 3.36
2309 6606 2.541178 GCGTGGAGTATGGTTAGAGACG 60.541 54.545 0.00 0.00 0.00 4.18
2310 6607 2.541178 CGTGGAGTATGGTTAGAGACGC 60.541 54.545 0.00 0.00 0.00 5.19
2311 6608 2.688958 GTGGAGTATGGTTAGAGACGCT 59.311 50.000 0.00 0.00 0.00 5.07
2312 6609 3.130693 GTGGAGTATGGTTAGAGACGCTT 59.869 47.826 0.00 0.00 0.00 4.68
2313 6610 3.767673 TGGAGTATGGTTAGAGACGCTTT 59.232 43.478 0.00 0.00 0.00 3.51
2314 6611 4.142227 TGGAGTATGGTTAGAGACGCTTTC 60.142 45.833 0.00 0.00 0.00 2.62
2315 6612 4.142227 GGAGTATGGTTAGAGACGCTTTCA 60.142 45.833 0.00 0.00 0.00 2.69
2316 6613 5.401531 AGTATGGTTAGAGACGCTTTCAA 57.598 39.130 0.00 0.00 0.00 2.69
2317 6614 5.790593 AGTATGGTTAGAGACGCTTTCAAA 58.209 37.500 0.00 0.00 0.00 2.69
2318 6615 5.638234 AGTATGGTTAGAGACGCTTTCAAAC 59.362 40.000 0.00 0.00 0.00 2.93
2319 6616 3.799366 TGGTTAGAGACGCTTTCAAACA 58.201 40.909 0.00 0.00 0.00 2.83
2320 6617 4.193090 TGGTTAGAGACGCTTTCAAACAA 58.807 39.130 0.00 0.00 0.00 2.83
2321 6618 4.636648 TGGTTAGAGACGCTTTCAAACAAA 59.363 37.500 0.00 0.00 0.00 2.83
2322 6619 5.124138 TGGTTAGAGACGCTTTCAAACAAAA 59.876 36.000 0.00 0.00 0.00 2.44
2323 6620 6.183360 TGGTTAGAGACGCTTTCAAACAAAAT 60.183 34.615 0.00 0.00 0.00 1.82
2324 6621 6.695713 GGTTAGAGACGCTTTCAAACAAAATT 59.304 34.615 0.00 0.00 0.00 1.82
2325 6622 7.305993 GGTTAGAGACGCTTTCAAACAAAATTG 60.306 37.037 0.00 0.00 0.00 2.32
2326 6623 5.043248 AGAGACGCTTTCAAACAAAATTGG 58.957 37.500 0.00 0.00 0.00 3.16
2327 6624 5.004922 AGACGCTTTCAAACAAAATTGGA 57.995 34.783 0.00 0.00 0.00 3.53
2328 6625 5.415221 AGACGCTTTCAAACAAAATTGGAA 58.585 33.333 0.00 0.00 0.00 3.53
2329 6626 6.048509 AGACGCTTTCAAACAAAATTGGAAT 58.951 32.000 0.00 0.00 27.73 3.01
2330 6627 6.200854 AGACGCTTTCAAACAAAATTGGAATC 59.799 34.615 0.00 0.00 27.73 2.52
2331 6628 5.236263 ACGCTTTCAAACAAAATTGGAATCC 59.764 36.000 0.00 0.00 27.73 3.01
2332 6629 5.236047 CGCTTTCAAACAAAATTGGAATCCA 59.764 36.000 0.00 0.00 27.73 3.41
2333 6630 6.429624 GCTTTCAAACAAAATTGGAATCCAC 58.570 36.000 0.00 0.00 30.78 4.02
2334 6631 6.038050 GCTTTCAAACAAAATTGGAATCCACA 59.962 34.615 0.00 0.00 30.78 4.17
2335 6632 7.551035 TTTCAAACAAAATTGGAATCCACAG 57.449 32.000 0.00 0.00 30.78 3.66
2336 6633 6.232581 TCAAACAAAATTGGAATCCACAGT 57.767 33.333 0.00 0.00 30.78 3.55
2337 6634 6.279882 TCAAACAAAATTGGAATCCACAGTC 58.720 36.000 0.00 0.00 30.78 3.51
2338 6635 6.098124 TCAAACAAAATTGGAATCCACAGTCT 59.902 34.615 0.00 0.00 30.78 3.24
2339 6636 7.286546 TCAAACAAAATTGGAATCCACAGTCTA 59.713 33.333 0.00 0.00 30.78 2.59
2340 6637 6.824305 ACAAAATTGGAATCCACAGTCTAG 57.176 37.500 0.00 0.00 30.78 2.43
2341 6638 5.183904 ACAAAATTGGAATCCACAGTCTAGC 59.816 40.000 0.00 0.00 30.78 3.42
2342 6639 3.567478 ATTGGAATCCACAGTCTAGCC 57.433 47.619 0.00 0.00 30.78 3.93
2343 6640 1.951209 TGGAATCCACAGTCTAGCCA 58.049 50.000 0.00 0.00 0.00 4.75
2344 6641 1.555075 TGGAATCCACAGTCTAGCCAC 59.445 52.381 0.00 0.00 0.00 5.01
2345 6642 1.471676 GGAATCCACAGTCTAGCCACG 60.472 57.143 0.00 0.00 0.00 4.94
2346 6643 1.476891 GAATCCACAGTCTAGCCACGA 59.523 52.381 0.00 0.00 0.00 4.35
2347 6644 1.781786 ATCCACAGTCTAGCCACGAT 58.218 50.000 0.00 0.00 0.00 3.73
2348 6645 0.817654 TCCACAGTCTAGCCACGATG 59.182 55.000 0.00 0.00 0.00 3.84
2349 6646 0.532573 CCACAGTCTAGCCACGATGT 59.467 55.000 0.00 0.00 0.00 3.06
2350 6647 1.066858 CCACAGTCTAGCCACGATGTT 60.067 52.381 0.00 0.00 0.00 2.71
2351 6648 2.263077 CACAGTCTAGCCACGATGTTC 58.737 52.381 0.00 0.00 0.00 3.18
2352 6649 2.094494 CACAGTCTAGCCACGATGTTCT 60.094 50.000 0.00 0.00 0.00 3.01
2353 6650 2.563179 ACAGTCTAGCCACGATGTTCTT 59.437 45.455 0.00 0.00 0.00 2.52
2354 6651 3.182967 CAGTCTAGCCACGATGTTCTTC 58.817 50.000 0.00 0.00 0.00 2.87
2355 6652 2.166664 AGTCTAGCCACGATGTTCTTCC 59.833 50.000 0.00 0.00 0.00 3.46
2356 6653 2.166664 GTCTAGCCACGATGTTCTTCCT 59.833 50.000 0.00 0.00 0.00 3.36
2357 6654 3.380637 GTCTAGCCACGATGTTCTTCCTA 59.619 47.826 0.00 0.00 0.00 2.94
2358 6655 4.038162 GTCTAGCCACGATGTTCTTCCTAT 59.962 45.833 0.00 0.00 0.00 2.57
2359 6656 3.460857 AGCCACGATGTTCTTCCTATC 57.539 47.619 0.00 0.00 0.00 2.08
2360 6657 3.034635 AGCCACGATGTTCTTCCTATCT 58.965 45.455 0.00 0.00 0.00 1.98
2361 6658 3.452627 AGCCACGATGTTCTTCCTATCTT 59.547 43.478 0.00 0.00 0.00 2.40
2362 6659 4.649674 AGCCACGATGTTCTTCCTATCTTA 59.350 41.667 0.00 0.00 0.00 2.10
2363 6660 5.128827 AGCCACGATGTTCTTCCTATCTTAA 59.871 40.000 0.00 0.00 0.00 1.85
2364 6661 5.234543 GCCACGATGTTCTTCCTATCTTAAC 59.765 44.000 0.00 0.00 0.00 2.01
2365 6662 5.459107 CCACGATGTTCTTCCTATCTTAACG 59.541 44.000 0.00 0.00 0.00 3.18
2366 6663 5.459107 CACGATGTTCTTCCTATCTTAACGG 59.541 44.000 0.00 0.00 0.00 4.44
2367 6664 4.444720 CGATGTTCTTCCTATCTTAACGGC 59.555 45.833 0.00 0.00 0.00 5.68
2368 6665 3.777478 TGTTCTTCCTATCTTAACGGCG 58.223 45.455 4.80 4.80 0.00 6.46
2369 6666 2.503920 TCTTCCTATCTTAACGGCGC 57.496 50.000 6.90 0.00 0.00 6.53
2370 6667 1.752498 TCTTCCTATCTTAACGGCGCA 59.248 47.619 10.83 0.00 0.00 6.09
2371 6668 2.166870 TCTTCCTATCTTAACGGCGCAA 59.833 45.455 10.83 0.00 0.00 4.85
2372 6669 2.676632 TCCTATCTTAACGGCGCAAA 57.323 45.000 10.83 0.00 0.00 3.68
2373 6670 2.546778 TCCTATCTTAACGGCGCAAAG 58.453 47.619 10.83 11.30 0.00 2.77
2374 6671 2.166870 TCCTATCTTAACGGCGCAAAGA 59.833 45.455 21.76 21.76 34.00 2.52
2375 6672 2.540101 CCTATCTTAACGGCGCAAAGAG 59.460 50.000 23.14 13.97 33.05 2.85
2376 6673 1.369625 ATCTTAACGGCGCAAAGAGG 58.630 50.000 23.14 3.75 33.05 3.69
2377 6674 0.672401 TCTTAACGGCGCAAAGAGGG 60.672 55.000 17.40 0.00 0.00 4.30
2378 6675 1.644786 CTTAACGGCGCAAAGAGGGG 61.645 60.000 10.83 0.00 0.00 4.79
2383 6680 3.070576 GCGCAAAGAGGGGCCAAT 61.071 61.111 4.39 0.00 40.50 3.16
2384 6681 2.887360 CGCAAAGAGGGGCCAATG 59.113 61.111 4.39 0.00 0.00 2.82
2385 6682 2.580815 GCAAAGAGGGGCCAATGC 59.419 61.111 4.39 4.08 0.00 3.56
2386 6683 2.285024 GCAAAGAGGGGCCAATGCA 61.285 57.895 4.39 0.00 40.13 3.96
2387 6684 1.829523 GCAAAGAGGGGCCAATGCAA 61.830 55.000 4.39 0.00 40.13 4.08
2388 6685 0.248289 CAAAGAGGGGCCAATGCAAG 59.752 55.000 4.39 0.00 40.13 4.01
2389 6686 0.906282 AAAGAGGGGCCAATGCAAGG 60.906 55.000 4.39 4.27 40.13 3.61
2390 6687 1.803453 AAGAGGGGCCAATGCAAGGA 61.803 55.000 4.39 0.00 40.13 3.36
2391 6688 1.075748 GAGGGGCCAATGCAAGGAT 60.076 57.895 4.39 0.00 40.13 3.24
2392 6689 0.185901 GAGGGGCCAATGCAAGGATA 59.814 55.000 4.39 0.00 40.13 2.59
2393 6690 0.186873 AGGGGCCAATGCAAGGATAG 59.813 55.000 4.39 0.00 40.13 2.08
2394 6691 0.106015 GGGGCCAATGCAAGGATAGT 60.106 55.000 4.39 0.00 40.13 2.12
2395 6692 1.689258 GGGGCCAATGCAAGGATAGTT 60.689 52.381 4.39 0.00 40.13 2.24
2396 6693 2.110578 GGGCCAATGCAAGGATAGTTT 58.889 47.619 4.39 0.00 40.13 2.66
2397 6694 2.159057 GGGCCAATGCAAGGATAGTTTG 60.159 50.000 4.39 0.00 40.13 2.93
2405 6702 3.329743 CAAGGATAGTTTGCAGATGCG 57.670 47.619 0.00 0.00 45.83 4.73
2406 6703 2.679837 CAAGGATAGTTTGCAGATGCGT 59.320 45.455 0.00 0.00 45.83 5.24
2407 6704 2.991250 AGGATAGTTTGCAGATGCGTT 58.009 42.857 0.00 0.00 45.83 4.84
2408 6705 2.679837 AGGATAGTTTGCAGATGCGTTG 59.320 45.455 0.00 0.00 45.83 4.10
2409 6706 2.223340 GGATAGTTTGCAGATGCGTTGG 60.223 50.000 0.00 0.00 45.83 3.77
2410 6707 1.164411 TAGTTTGCAGATGCGTTGGG 58.836 50.000 0.00 0.00 45.83 4.12
2411 6708 1.080569 GTTTGCAGATGCGTTGGGG 60.081 57.895 0.00 0.00 45.83 4.96
2412 6709 2.929903 TTTGCAGATGCGTTGGGGC 61.930 57.895 0.00 0.00 45.83 5.80
2421 6718 4.705519 CGTTGGGGCGCTGCTTTG 62.706 66.667 7.64 0.00 0.00 2.77
2422 6719 4.362476 GTTGGGGCGCTGCTTTGG 62.362 66.667 7.64 0.00 0.00 3.28
2428 6725 3.368571 GCGCTGCTTTGGGCTCTT 61.369 61.111 0.00 0.00 41.74 2.85
2429 6726 2.924105 GCGCTGCTTTGGGCTCTTT 61.924 57.895 0.00 0.00 41.74 2.52
2430 6727 1.080974 CGCTGCTTTGGGCTCTTTG 60.081 57.895 0.00 0.00 42.39 2.77
2431 6728 1.291272 GCTGCTTTGGGCTCTTTGG 59.709 57.895 0.00 0.00 42.39 3.28
2432 6729 1.466851 GCTGCTTTGGGCTCTTTGGT 61.467 55.000 0.00 0.00 42.39 3.67
2433 6730 0.600057 CTGCTTTGGGCTCTTTGGTC 59.400 55.000 0.00 0.00 42.39 4.02
2434 6731 1.172180 TGCTTTGGGCTCTTTGGTCG 61.172 55.000 0.00 0.00 42.39 4.79
2435 6732 1.866853 GCTTTGGGCTCTTTGGTCGG 61.867 60.000 0.00 0.00 38.06 4.79
2436 6733 0.537371 CTTTGGGCTCTTTGGTCGGT 60.537 55.000 0.00 0.00 0.00 4.69
2437 6734 0.106419 TTTGGGCTCTTTGGTCGGTT 60.106 50.000 0.00 0.00 0.00 4.44
2438 6735 0.106419 TTGGGCTCTTTGGTCGGTTT 60.106 50.000 0.00 0.00 0.00 3.27
2439 6736 0.821711 TGGGCTCTTTGGTCGGTTTG 60.822 55.000 0.00 0.00 0.00 2.93
2440 6737 1.524008 GGGCTCTTTGGTCGGTTTGG 61.524 60.000 0.00 0.00 0.00 3.28
2441 6738 0.536460 GGCTCTTTGGTCGGTTTGGA 60.536 55.000 0.00 0.00 0.00 3.53
2442 6739 1.314730 GCTCTTTGGTCGGTTTGGAA 58.685 50.000 0.00 0.00 0.00 3.53
2443 6740 1.001706 GCTCTTTGGTCGGTTTGGAAC 60.002 52.381 0.00 0.00 0.00 3.62
2444 6741 2.294074 CTCTTTGGTCGGTTTGGAACA 58.706 47.619 0.00 0.00 0.00 3.18
2459 6756 4.231718 TGGAACAAAATTACGGTTGAGC 57.768 40.909 0.00 0.00 31.92 4.26
2460 6757 3.632604 TGGAACAAAATTACGGTTGAGCA 59.367 39.130 0.00 0.00 31.92 4.26
2461 6758 3.978855 GGAACAAAATTACGGTTGAGCAC 59.021 43.478 0.00 0.00 0.00 4.40
2462 6759 4.498345 GGAACAAAATTACGGTTGAGCACA 60.498 41.667 0.00 0.00 0.00 4.57
2463 6760 4.640789 ACAAAATTACGGTTGAGCACAA 57.359 36.364 0.00 0.00 0.00 3.33
2464 6761 4.606961 ACAAAATTACGGTTGAGCACAAG 58.393 39.130 0.00 0.00 36.64 3.16
2465 6762 4.097286 ACAAAATTACGGTTGAGCACAAGT 59.903 37.500 0.00 0.00 36.64 3.16
2466 6763 4.911514 AAATTACGGTTGAGCACAAGTT 57.088 36.364 0.00 0.00 36.64 2.66
2467 6764 4.483476 AATTACGGTTGAGCACAAGTTC 57.517 40.909 0.00 0.00 36.64 3.01
2468 6765 1.873698 TACGGTTGAGCACAAGTTCC 58.126 50.000 0.00 0.00 36.64 3.62
2469 6766 0.818040 ACGGTTGAGCACAAGTTCCC 60.818 55.000 0.00 0.00 36.64 3.97
2470 6767 1.841663 CGGTTGAGCACAAGTTCCCG 61.842 60.000 8.74 8.74 36.29 5.14
2471 6768 1.515521 GGTTGAGCACAAGTTCCCGG 61.516 60.000 0.00 0.00 36.64 5.73
2472 6769 1.896660 TTGAGCACAAGTTCCCGGC 60.897 57.895 0.00 0.00 0.00 6.13
2473 6770 3.056328 GAGCACAAGTTCCCGGCC 61.056 66.667 0.00 0.00 0.00 6.13
2474 6771 4.660938 AGCACAAGTTCCCGGCCC 62.661 66.667 0.00 0.00 0.00 5.80
2475 6772 4.966787 GCACAAGTTCCCGGCCCA 62.967 66.667 0.00 0.00 0.00 5.36
2476 6773 2.983592 CACAAGTTCCCGGCCCAC 60.984 66.667 0.00 0.00 0.00 4.61
2477 6774 4.280019 ACAAGTTCCCGGCCCACC 62.280 66.667 0.00 0.00 0.00 4.61
2487 6784 3.570212 GGCCCACCCCGCTGATAT 61.570 66.667 0.00 0.00 0.00 1.63
2488 6785 2.032681 GCCCACCCCGCTGATATC 59.967 66.667 0.00 0.00 0.00 1.63
2489 6786 2.818169 GCCCACCCCGCTGATATCA 61.818 63.158 5.07 5.07 0.00 2.15
2490 6787 2.069776 CCCACCCCGCTGATATCAT 58.930 57.895 5.72 0.00 0.00 2.45
2491 6788 0.036010 CCCACCCCGCTGATATCATC 60.036 60.000 5.72 0.54 0.00 2.92
2492 6789 0.979665 CCACCCCGCTGATATCATCT 59.020 55.000 5.72 0.00 0.00 2.90
2493 6790 1.349026 CCACCCCGCTGATATCATCTT 59.651 52.381 5.72 0.00 0.00 2.40
2494 6791 2.613977 CCACCCCGCTGATATCATCTTC 60.614 54.545 5.72 0.00 0.00 2.87
2495 6792 2.037641 CACCCCGCTGATATCATCTTCA 59.962 50.000 5.72 0.00 0.00 3.02
2496 6793 2.705658 ACCCCGCTGATATCATCTTCAA 59.294 45.455 5.72 0.00 0.00 2.69
2497 6794 3.136443 ACCCCGCTGATATCATCTTCAAA 59.864 43.478 5.72 0.00 0.00 2.69
2498 6795 4.202503 ACCCCGCTGATATCATCTTCAAAT 60.203 41.667 5.72 0.00 0.00 2.32
2499 6796 4.155462 CCCCGCTGATATCATCTTCAAATG 59.845 45.833 5.72 0.00 0.00 2.32
2500 6797 4.758674 CCCGCTGATATCATCTTCAAATGT 59.241 41.667 5.72 0.00 0.00 2.71
2501 6798 5.106791 CCCGCTGATATCATCTTCAAATGTC 60.107 44.000 5.72 0.00 0.00 3.06
2502 6799 5.467735 CCGCTGATATCATCTTCAAATGTCA 59.532 40.000 5.72 0.00 0.00 3.58
2503 6800 6.361114 CGCTGATATCATCTTCAAATGTCAC 58.639 40.000 5.72 0.00 0.00 3.67
2504 6801 6.018507 CGCTGATATCATCTTCAAATGTCACA 60.019 38.462 5.72 0.00 0.00 3.58
2505 6802 7.307811 CGCTGATATCATCTTCAAATGTCACAT 60.308 37.037 5.72 0.00 0.00 3.21
2506 6803 8.350722 GCTGATATCATCTTCAAATGTCACATT 58.649 33.333 5.72 0.00 0.00 2.71
2512 6809 9.991906 ATCATCTTCAAATGTCACATTTTTCTT 57.008 25.926 13.35 0.00 0.00 2.52
2513 6810 9.467258 TCATCTTCAAATGTCACATTTTTCTTC 57.533 29.630 13.35 0.00 0.00 2.87
2514 6811 9.251792 CATCTTCAAATGTCACATTTTTCTTCA 57.748 29.630 13.35 0.00 0.00 3.02
2515 6812 8.861033 TCTTCAAATGTCACATTTTTCTTCAG 57.139 30.769 13.35 0.86 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 4.679373 ATATCTCTCCTCACACGCAAAT 57.321 40.909 0.00 0.00 0.00 2.32
149 207 6.072783 TGCGACATAACATCATCAAGTGAAAA 60.073 34.615 0.00 0.00 40.97 2.29
169 227 0.590195 GCATCATCCTGGATTGCGAC 59.410 55.000 15.48 0.00 0.00 5.19
171 229 0.309922 GTGCATCATCCTGGATTGCG 59.690 55.000 22.02 7.36 0.00 4.85
245 305 9.753669 CATCCACAAAAAGAAAAACAAGTTTAC 57.246 29.630 0.00 0.00 31.63 2.01
259 319 6.420604 ACGCTTCAAATTACATCCACAAAAAG 59.579 34.615 0.00 0.00 0.00 2.27
278 383 8.866956 ACATATACAGTAAAGTTAACACGCTTC 58.133 33.333 8.61 0.00 0.00 3.86
381 487 6.310224 CACCTTTCAAGTTTCAACGACAAAAT 59.690 34.615 0.00 0.00 0.00 1.82
436 543 6.143118 TGCATGAATTTTGCGTTACAACTAAC 59.857 34.615 0.00 0.00 43.10 2.34
508 615 4.083749 TCAACTCGAACTTCTCTTCTCTCG 60.084 45.833 0.00 0.00 0.00 4.04
657 777 3.234630 TTCTGAAGACCGGGCCACG 62.235 63.158 1.76 5.77 43.80 4.94
658 778 1.671379 GTTCTGAAGACCGGGCCAC 60.671 63.158 1.76 0.00 0.00 5.01
659 779 1.415672 AAGTTCTGAAGACCGGGCCA 61.416 55.000 1.76 0.00 0.00 5.36
660 780 0.673956 GAAGTTCTGAAGACCGGGCC 60.674 60.000 1.76 0.00 0.00 5.80
661 781 0.673956 GGAAGTTCTGAAGACCGGGC 60.674 60.000 6.32 0.52 0.00 6.13
662 782 0.389948 CGGAAGTTCTGAAGACCGGG 60.390 60.000 6.32 0.00 37.28 5.73
663 783 0.317479 ACGGAAGTTCTGAAGACCGG 59.683 55.000 18.72 0.00 46.40 5.28
806 2390 5.752892 TGGAAGCGTAGAATAGACTACAG 57.247 43.478 0.00 0.00 41.70 2.74
980 2585 5.183904 GCCATTGTGGTAGAAACTGAAAGAT 59.816 40.000 0.00 0.00 40.46 2.40
981 2586 4.518970 GCCATTGTGGTAGAAACTGAAAGA 59.481 41.667 0.00 0.00 40.46 2.52
1033 2647 1.688884 TCAGGATGGCCATCACGGA 60.689 57.895 39.50 30.45 39.54 4.69
1096 2710 0.251297 TTGGTGCTGAGGTCCCATTG 60.251 55.000 0.00 0.00 0.00 2.82
1097 2711 0.251341 GTTGGTGCTGAGGTCCCATT 60.251 55.000 0.00 0.00 0.00 3.16
1458 3073 2.520458 CCAAACCCTGTGGCCTCA 59.480 61.111 3.32 5.63 33.59 3.86
1704 5972 1.279271 GAGCTGAGGGTGGCTTCTTAA 59.721 52.381 0.00 0.00 39.05 1.85
1755 6025 7.496591 GGAAGTTACATATGAAATAACGGGTGA 59.503 37.037 10.38 0.00 34.63 4.02
1762 6032 8.553153 TGGTGAGGGAAGTTACATATGAAATAA 58.447 33.333 10.38 0.00 29.06 1.40
1785 6057 1.902918 ATGCCACACACGCAATGGT 60.903 52.632 0.00 0.00 40.22 3.55
1812 6084 6.239217 AGTAGTTAGGCATGACATCAATCA 57.761 37.500 0.00 0.00 0.00 2.57
1857 6129 1.747774 GTTGCACTTGGGCCATTGT 59.252 52.632 7.26 7.00 0.00 2.71
1888 6162 1.605710 GTGACAGATATGGGCACATGC 59.394 52.381 12.99 3.33 37.97 4.06
1889 6163 2.158711 AGGTGACAGATATGGGCACATG 60.159 50.000 12.99 0.00 37.97 3.21
1897 6171 3.635836 TCTGCAGAGAGGTGACAGATATG 59.364 47.826 13.74 0.00 32.65 1.78
1905 6179 0.900421 CATGGTCTGCAGAGAGGTGA 59.100 55.000 18.89 0.00 0.00 4.02
1971 6260 1.451927 CGCATATGTGTGGGGCTGT 60.452 57.895 8.16 0.00 32.19 4.40
2076 6373 1.030457 ATCCAGCGTAGTACCTTCGG 58.970 55.000 0.00 0.00 0.00 4.30
2077 6374 4.437121 GCTATATCCAGCGTAGTACCTTCG 60.437 50.000 0.00 0.00 0.00 3.79
2078 6375 4.701171 AGCTATATCCAGCGTAGTACCTTC 59.299 45.833 0.00 0.00 46.52 3.46
2079 6376 4.664392 AGCTATATCCAGCGTAGTACCTT 58.336 43.478 0.00 0.00 46.52 3.50
2080 6377 4.304048 AGCTATATCCAGCGTAGTACCT 57.696 45.455 0.00 0.00 46.52 3.08
2081 6378 4.575645 CCTAGCTATATCCAGCGTAGTACC 59.424 50.000 0.00 0.00 46.52 3.34
2082 6379 4.575645 CCCTAGCTATATCCAGCGTAGTAC 59.424 50.000 0.00 0.00 46.52 2.73
2083 6380 4.384978 CCCCTAGCTATATCCAGCGTAGTA 60.385 50.000 0.00 0.00 46.52 1.82
2084 6381 3.622630 CCCTAGCTATATCCAGCGTAGT 58.377 50.000 0.00 0.00 46.52 2.73
2085 6382 2.952978 CCCCTAGCTATATCCAGCGTAG 59.047 54.545 0.00 0.00 46.52 3.51
2086 6383 2.357881 CCCCCTAGCTATATCCAGCGTA 60.358 54.545 0.00 0.00 46.52 4.42
2087 6384 1.619977 CCCCCTAGCTATATCCAGCGT 60.620 57.143 0.00 0.00 46.52 5.07
2088 6385 1.115467 CCCCCTAGCTATATCCAGCG 58.885 60.000 0.00 0.00 46.52 5.18
2089 6386 0.833949 GCCCCCTAGCTATATCCAGC 59.166 60.000 0.00 0.00 42.12 4.85
2090 6387 2.559381 AGCCCCCTAGCTATATCCAG 57.441 55.000 0.00 0.00 42.70 3.86
2099 6396 2.070639 CCTTCCATAGCCCCCTAGC 58.929 63.158 0.00 0.00 0.00 3.42
2100 6397 1.492993 GGCCTTCCATAGCCCCCTAG 61.493 65.000 0.00 0.00 43.76 3.02
2101 6398 1.463410 GGCCTTCCATAGCCCCCTA 60.463 63.158 0.00 0.00 43.76 3.53
2102 6399 2.778717 GGCCTTCCATAGCCCCCT 60.779 66.667 0.00 0.00 43.76 4.79
2106 6403 0.036294 GATACCGGCCTTCCATAGCC 60.036 60.000 0.00 0.00 46.17 3.93
2107 6404 0.036294 GGATACCGGCCTTCCATAGC 60.036 60.000 0.00 0.00 0.00 2.97
2119 6416 7.067494 AAAATCTTGATTTTGAGAGGGATACCG 59.933 37.037 17.33 0.00 46.30 4.02
2120 6417 8.298729 AAAATCTTGATTTTGAGAGGGATACC 57.701 34.615 17.33 0.00 44.02 2.73
2121 6418 9.183368 AGAAAATCTTGATTTTGAGAGGGATAC 57.817 33.333 21.44 7.17 34.24 2.24
2122 6419 9.759473 AAGAAAATCTTGATTTTGAGAGGGATA 57.241 29.630 21.44 0.00 34.98 2.59
2123 6420 8.661752 AAGAAAATCTTGATTTTGAGAGGGAT 57.338 30.769 21.44 0.00 34.98 3.85
2138 6435 6.813152 CGGAATATTTGCCACAAGAAAATCTT 59.187 34.615 0.00 0.00 37.14 2.40
2139 6436 6.332630 CGGAATATTTGCCACAAGAAAATCT 58.667 36.000 0.00 0.00 0.00 2.40
2140 6437 5.005682 GCGGAATATTTGCCACAAGAAAATC 59.994 40.000 3.00 0.00 0.00 2.17
2141 6438 4.869861 GCGGAATATTTGCCACAAGAAAAT 59.130 37.500 3.00 0.00 0.00 1.82
2142 6439 4.241681 GCGGAATATTTGCCACAAGAAAA 58.758 39.130 3.00 0.00 0.00 2.29
2143 6440 3.256879 TGCGGAATATTTGCCACAAGAAA 59.743 39.130 10.13 0.00 0.00 2.52
2144 6441 2.822561 TGCGGAATATTTGCCACAAGAA 59.177 40.909 10.13 0.00 0.00 2.52
2145 6442 2.423185 CTGCGGAATATTTGCCACAAGA 59.577 45.455 10.13 0.00 0.00 3.02
2146 6443 2.164219 ACTGCGGAATATTTGCCACAAG 59.836 45.455 0.00 4.84 0.00 3.16
2147 6444 2.163412 GACTGCGGAATATTTGCCACAA 59.837 45.455 0.00 0.00 0.00 3.33
2148 6445 1.742831 GACTGCGGAATATTTGCCACA 59.257 47.619 0.00 0.00 0.00 4.17
2149 6446 1.268032 CGACTGCGGAATATTTGCCAC 60.268 52.381 0.00 0.00 0.00 5.01
2150 6447 1.013596 CGACTGCGGAATATTTGCCA 58.986 50.000 0.00 0.00 0.00 4.92
2151 6448 0.317020 GCGACTGCGGAATATTTGCC 60.317 55.000 0.00 0.00 38.16 4.52
2152 6449 3.148823 GCGACTGCGGAATATTTGC 57.851 52.632 0.00 6.66 38.16 3.68
2163 6460 0.666577 AGACGTTGGTAAGCGACTGC 60.667 55.000 0.00 0.00 43.24 4.40
2164 6461 1.060713 CAGACGTTGGTAAGCGACTG 58.939 55.000 0.00 0.00 42.06 3.51
2165 6462 0.956633 TCAGACGTTGGTAAGCGACT 59.043 50.000 0.00 0.00 33.97 4.18
2166 6463 1.058404 GTCAGACGTTGGTAAGCGAC 58.942 55.000 0.00 0.00 0.00 5.19
2167 6464 0.669619 TGTCAGACGTTGGTAAGCGA 59.330 50.000 0.00 0.00 0.00 4.93
2168 6465 1.493772 TTGTCAGACGTTGGTAAGCG 58.506 50.000 0.00 0.00 0.00 4.68
2169 6466 2.806244 ACATTGTCAGACGTTGGTAAGC 59.194 45.455 7.30 0.00 0.00 3.09
2170 6467 3.186409 CCACATTGTCAGACGTTGGTAAG 59.814 47.826 7.30 0.00 0.00 2.34
2171 6468 3.135225 CCACATTGTCAGACGTTGGTAA 58.865 45.455 7.30 0.00 0.00 2.85
2172 6469 2.761559 CCACATTGTCAGACGTTGGTA 58.238 47.619 7.30 0.00 0.00 3.25
2173 6470 1.593196 CCACATTGTCAGACGTTGGT 58.407 50.000 7.30 0.00 0.00 3.67
2174 6471 0.238289 GCCACATTGTCAGACGTTGG 59.762 55.000 7.30 6.40 0.00 3.77
2175 6472 0.238289 GGCCACATTGTCAGACGTTG 59.762 55.000 0.00 0.00 0.00 4.10
2176 6473 0.179032 TGGCCACATTGTCAGACGTT 60.179 50.000 0.00 0.00 0.00 3.99
2177 6474 0.179032 TTGGCCACATTGTCAGACGT 60.179 50.000 3.88 0.00 0.00 4.34
2178 6475 0.950836 TTTGGCCACATTGTCAGACG 59.049 50.000 3.88 0.00 0.00 4.18
2179 6476 1.334960 CGTTTGGCCACATTGTCAGAC 60.335 52.381 3.88 0.00 0.00 3.51
2180 6477 0.950836 CGTTTGGCCACATTGTCAGA 59.049 50.000 3.88 0.00 0.00 3.27
2181 6478 0.664166 GCGTTTGGCCACATTGTCAG 60.664 55.000 3.88 0.00 34.80 3.51
2182 6479 1.361993 GCGTTTGGCCACATTGTCA 59.638 52.632 3.88 0.00 34.80 3.58
2183 6480 0.249238 TTGCGTTTGGCCACATTGTC 60.249 50.000 3.88 0.00 42.61 3.18
2184 6481 0.392336 ATTGCGTTTGGCCACATTGT 59.608 45.000 3.88 0.00 42.61 2.71
2185 6482 0.791422 CATTGCGTTTGGCCACATTG 59.209 50.000 3.88 3.05 42.61 2.82
2186 6483 0.320596 CCATTGCGTTTGGCCACATT 60.321 50.000 3.88 0.00 42.61 2.71
2187 6484 1.292860 CCATTGCGTTTGGCCACAT 59.707 52.632 3.88 0.00 42.61 3.21
2188 6485 2.733301 CCATTGCGTTTGGCCACA 59.267 55.556 3.88 0.00 42.61 4.17
2189 6486 2.048316 CCCATTGCGTTTGGCCAC 60.048 61.111 3.88 0.00 42.61 5.01
2190 6487 4.001226 GCCCATTGCGTTTGGCCA 62.001 61.111 0.00 0.00 42.61 5.36
2193 6490 4.433877 CCGGCCCATTGCGTTTGG 62.434 66.667 0.00 0.00 42.61 3.28
2211 6508 4.953868 TGGTGCACGTTCCGTCCG 62.954 66.667 11.45 0.00 38.32 4.79
2212 6509 3.343421 GTGGTGCACGTTCCGTCC 61.343 66.667 11.45 0.00 38.32 4.79
2213 6510 1.885850 AAGTGGTGCACGTTCCGTC 60.886 57.895 11.45 0.00 38.32 4.79
2214 6511 2.177580 CAAGTGGTGCACGTTCCGT 61.178 57.895 11.45 0.00 42.36 4.69
2215 6512 2.631428 CAAGTGGTGCACGTTCCG 59.369 61.111 11.45 0.00 39.64 4.30
2224 6521 1.241315 CCCCTAAACCGCAAGTGGTG 61.241 60.000 6.00 0.00 42.89 4.17
2225 6522 1.074248 CCCCTAAACCGCAAGTGGT 59.926 57.895 0.00 0.00 46.67 4.16
2226 6523 0.250989 TTCCCCTAAACCGCAAGTGG 60.251 55.000 0.00 0.00 0.00 4.00
2227 6524 1.611519 TTTCCCCTAAACCGCAAGTG 58.388 50.000 0.00 0.00 0.00 3.16
2228 6525 1.958579 GTTTTCCCCTAAACCGCAAGT 59.041 47.619 0.00 0.00 33.01 3.16
2229 6526 1.068816 CGTTTTCCCCTAAACCGCAAG 60.069 52.381 0.00 0.00 35.15 4.01
2230 6527 0.953003 CGTTTTCCCCTAAACCGCAA 59.047 50.000 0.00 0.00 35.15 4.85
2231 6528 1.517210 GCGTTTTCCCCTAAACCGCA 61.517 55.000 7.40 0.00 37.42 5.69
2232 6529 1.210931 GCGTTTTCCCCTAAACCGC 59.789 57.895 0.00 0.00 35.15 5.68
2233 6530 0.953003 TTGCGTTTTCCCCTAAACCG 59.047 50.000 0.00 0.00 35.15 4.44
2234 6531 3.006003 TGATTTGCGTTTTCCCCTAAACC 59.994 43.478 0.00 0.00 35.15 3.27
2235 6532 3.985279 GTGATTTGCGTTTTCCCCTAAAC 59.015 43.478 0.00 0.00 35.23 2.01
2236 6533 3.637229 TGTGATTTGCGTTTTCCCCTAAA 59.363 39.130 0.00 0.00 0.00 1.85
2237 6534 3.223435 TGTGATTTGCGTTTTCCCCTAA 58.777 40.909 0.00 0.00 0.00 2.69
2238 6535 2.865079 TGTGATTTGCGTTTTCCCCTA 58.135 42.857 0.00 0.00 0.00 3.53
2239 6536 1.698506 TGTGATTTGCGTTTTCCCCT 58.301 45.000 0.00 0.00 0.00 4.79
2240 6537 2.288763 ACATGTGATTTGCGTTTTCCCC 60.289 45.455 0.00 0.00 0.00 4.81
2241 6538 3.025287 ACATGTGATTTGCGTTTTCCC 57.975 42.857 0.00 0.00 0.00 3.97
2242 6539 4.298332 AGAACATGTGATTTGCGTTTTCC 58.702 39.130 0.00 0.00 0.00 3.13
2243 6540 5.386323 CGAAGAACATGTGATTTGCGTTTTC 60.386 40.000 0.00 0.00 0.00 2.29
2244 6541 4.440758 CGAAGAACATGTGATTTGCGTTTT 59.559 37.500 0.00 0.00 0.00 2.43
2245 6542 3.974401 CGAAGAACATGTGATTTGCGTTT 59.026 39.130 0.00 0.00 0.00 3.60
2246 6543 3.554524 CGAAGAACATGTGATTTGCGTT 58.445 40.909 0.00 0.00 0.00 4.84
2247 6544 2.095768 CCGAAGAACATGTGATTTGCGT 60.096 45.455 0.00 0.00 0.00 5.24
2248 6545 2.159430 TCCGAAGAACATGTGATTTGCG 59.841 45.455 0.00 0.00 0.00 4.85
2249 6546 3.829886 TCCGAAGAACATGTGATTTGC 57.170 42.857 0.00 0.00 0.00 3.68
2250 6547 4.100529 GCATCCGAAGAACATGTGATTTG 58.899 43.478 0.00 1.24 0.00 2.32
2251 6548 3.181507 CGCATCCGAAGAACATGTGATTT 60.182 43.478 0.00 0.00 36.29 2.17
2252 6549 2.352651 CGCATCCGAAGAACATGTGATT 59.647 45.455 0.00 0.00 36.29 2.57
2253 6550 1.935873 CGCATCCGAAGAACATGTGAT 59.064 47.619 0.00 0.00 36.29 3.06
2254 6551 1.337728 ACGCATCCGAAGAACATGTGA 60.338 47.619 0.00 0.00 38.29 3.58
2255 6552 1.078709 ACGCATCCGAAGAACATGTG 58.921 50.000 0.00 0.00 38.29 3.21
2256 6553 1.078709 CACGCATCCGAAGAACATGT 58.921 50.000 0.00 0.00 38.29 3.21
2257 6554 0.247814 GCACGCATCCGAAGAACATG 60.248 55.000 0.00 0.00 38.29 3.21
2258 6555 0.391661 AGCACGCATCCGAAGAACAT 60.392 50.000 0.00 0.00 38.29 2.71
2259 6556 1.005037 AGCACGCATCCGAAGAACA 60.005 52.632 0.00 0.00 38.29 3.18
2260 6557 1.710339 GAGCACGCATCCGAAGAAC 59.290 57.895 0.00 0.00 38.29 3.01
2261 6558 1.805539 CGAGCACGCATCCGAAGAA 60.806 57.895 0.00 0.00 38.29 2.52
2262 6559 2.202610 CGAGCACGCATCCGAAGA 60.203 61.111 0.00 0.00 38.29 2.87
2279 6576 2.802816 CCATACTCCACGCAAATCTAGC 59.197 50.000 0.00 0.00 0.00 3.42
2280 6577 4.060038 ACCATACTCCACGCAAATCTAG 57.940 45.455 0.00 0.00 0.00 2.43
2281 6578 4.481368 AACCATACTCCACGCAAATCTA 57.519 40.909 0.00 0.00 0.00 1.98
2282 6579 3.350219 AACCATACTCCACGCAAATCT 57.650 42.857 0.00 0.00 0.00 2.40
2283 6580 4.439057 TCTAACCATACTCCACGCAAATC 58.561 43.478 0.00 0.00 0.00 2.17
2284 6581 4.161565 TCTCTAACCATACTCCACGCAAAT 59.838 41.667 0.00 0.00 0.00 2.32
2285 6582 3.512329 TCTCTAACCATACTCCACGCAAA 59.488 43.478 0.00 0.00 0.00 3.68
2286 6583 3.093814 TCTCTAACCATACTCCACGCAA 58.906 45.455 0.00 0.00 0.00 4.85
2287 6584 2.426024 GTCTCTAACCATACTCCACGCA 59.574 50.000 0.00 0.00 0.00 5.24
2288 6585 2.541178 CGTCTCTAACCATACTCCACGC 60.541 54.545 0.00 0.00 0.00 5.34
2289 6586 2.541178 GCGTCTCTAACCATACTCCACG 60.541 54.545 0.00 0.00 0.00 4.94
2290 6587 2.688958 AGCGTCTCTAACCATACTCCAC 59.311 50.000 0.00 0.00 0.00 4.02
2291 6588 3.014304 AGCGTCTCTAACCATACTCCA 57.986 47.619 0.00 0.00 0.00 3.86
2292 6589 4.142227 TGAAAGCGTCTCTAACCATACTCC 60.142 45.833 0.00 0.00 0.00 3.85
2293 6590 4.995124 TGAAAGCGTCTCTAACCATACTC 58.005 43.478 0.00 0.00 0.00 2.59
2294 6591 5.401531 TTGAAAGCGTCTCTAACCATACT 57.598 39.130 0.00 0.00 0.00 2.12
2295 6592 5.407387 TGTTTGAAAGCGTCTCTAACCATAC 59.593 40.000 7.27 0.00 30.49 2.39
2296 6593 5.543714 TGTTTGAAAGCGTCTCTAACCATA 58.456 37.500 7.27 0.00 30.49 2.74
2297 6594 4.385825 TGTTTGAAAGCGTCTCTAACCAT 58.614 39.130 7.27 0.00 30.49 3.55
2298 6595 3.799366 TGTTTGAAAGCGTCTCTAACCA 58.201 40.909 7.27 0.00 30.49 3.67
2299 6596 4.806342 TTGTTTGAAAGCGTCTCTAACC 57.194 40.909 7.27 0.00 30.49 2.85
2300 6597 7.305993 CCAATTTTGTTTGAAAGCGTCTCTAAC 60.306 37.037 4.15 4.15 0.00 2.34
2301 6598 6.695278 CCAATTTTGTTTGAAAGCGTCTCTAA 59.305 34.615 0.00 0.00 0.00 2.10
2302 6599 6.038825 TCCAATTTTGTTTGAAAGCGTCTCTA 59.961 34.615 0.00 0.00 0.00 2.43
2303 6600 5.043248 CCAATTTTGTTTGAAAGCGTCTCT 58.957 37.500 0.00 0.00 0.00 3.10
2304 6601 5.040635 TCCAATTTTGTTTGAAAGCGTCTC 58.959 37.500 0.00 0.00 0.00 3.36
2305 6602 5.004922 TCCAATTTTGTTTGAAAGCGTCT 57.995 34.783 0.00 0.00 0.00 4.18
2306 6603 5.710613 TTCCAATTTTGTTTGAAAGCGTC 57.289 34.783 0.00 0.00 0.00 5.19
2307 6604 5.236263 GGATTCCAATTTTGTTTGAAAGCGT 59.764 36.000 0.00 0.00 0.00 5.07
2308 6605 5.236047 TGGATTCCAATTTTGTTTGAAAGCG 59.764 36.000 1.94 0.00 0.00 4.68
2309 6606 6.038050 TGTGGATTCCAATTTTGTTTGAAAGC 59.962 34.615 7.05 0.00 34.18 3.51
2310 6607 7.280652 ACTGTGGATTCCAATTTTGTTTGAAAG 59.719 33.333 7.05 0.00 34.18 2.62
2311 6608 7.108847 ACTGTGGATTCCAATTTTGTTTGAAA 58.891 30.769 7.05 0.00 34.18 2.69
2312 6609 6.648192 ACTGTGGATTCCAATTTTGTTTGAA 58.352 32.000 7.05 0.00 34.18 2.69
2313 6610 6.098124 AGACTGTGGATTCCAATTTTGTTTGA 59.902 34.615 7.05 0.00 34.18 2.69
2314 6611 6.282930 AGACTGTGGATTCCAATTTTGTTTG 58.717 36.000 7.05 0.00 34.18 2.93
2315 6612 6.484364 AGACTGTGGATTCCAATTTTGTTT 57.516 33.333 7.05 0.00 34.18 2.83
2316 6613 6.294731 GCTAGACTGTGGATTCCAATTTTGTT 60.295 38.462 7.05 0.00 34.18 2.83
2317 6614 5.183904 GCTAGACTGTGGATTCCAATTTTGT 59.816 40.000 7.05 2.29 34.18 2.83
2318 6615 5.393461 GGCTAGACTGTGGATTCCAATTTTG 60.393 44.000 7.05 0.00 34.18 2.44
2319 6616 4.706962 GGCTAGACTGTGGATTCCAATTTT 59.293 41.667 7.05 0.00 34.18 1.82
2320 6617 4.263905 TGGCTAGACTGTGGATTCCAATTT 60.264 41.667 7.05 0.00 34.18 1.82
2321 6618 3.266772 TGGCTAGACTGTGGATTCCAATT 59.733 43.478 7.05 0.00 34.18 2.32
2322 6619 2.846206 TGGCTAGACTGTGGATTCCAAT 59.154 45.455 7.05 0.00 34.18 3.16
2323 6620 2.027192 GTGGCTAGACTGTGGATTCCAA 60.027 50.000 7.05 0.00 34.18 3.53
2324 6621 1.555075 GTGGCTAGACTGTGGATTCCA 59.445 52.381 0.00 0.00 0.00 3.53
2325 6622 1.471676 CGTGGCTAGACTGTGGATTCC 60.472 57.143 0.00 0.00 0.00 3.01
2326 6623 1.476891 TCGTGGCTAGACTGTGGATTC 59.523 52.381 0.00 0.00 0.00 2.52
2327 6624 1.557099 TCGTGGCTAGACTGTGGATT 58.443 50.000 0.00 0.00 0.00 3.01
2328 6625 1.410517 CATCGTGGCTAGACTGTGGAT 59.589 52.381 0.00 0.00 0.00 3.41
2329 6626 0.817654 CATCGTGGCTAGACTGTGGA 59.182 55.000 0.00 0.00 0.00 4.02
2330 6627 0.532573 ACATCGTGGCTAGACTGTGG 59.467 55.000 0.00 0.00 0.00 4.17
2331 6628 2.094494 AGAACATCGTGGCTAGACTGTG 60.094 50.000 0.00 0.00 0.00 3.66
2332 6629 2.171840 AGAACATCGTGGCTAGACTGT 58.828 47.619 0.00 0.00 0.00 3.55
2333 6630 2.949451 AGAACATCGTGGCTAGACTG 57.051 50.000 0.00 0.00 0.00 3.51
2334 6631 2.166664 GGAAGAACATCGTGGCTAGACT 59.833 50.000 0.00 0.00 0.00 3.24
2335 6632 2.166664 AGGAAGAACATCGTGGCTAGAC 59.833 50.000 0.00 0.00 0.00 2.59
2336 6633 2.457598 AGGAAGAACATCGTGGCTAGA 58.542 47.619 0.00 0.00 0.00 2.43
2337 6634 2.969628 AGGAAGAACATCGTGGCTAG 57.030 50.000 0.00 0.00 0.00 3.42
2338 6635 4.215908 AGATAGGAAGAACATCGTGGCTA 58.784 43.478 0.00 0.00 0.00 3.93
2339 6636 3.034635 AGATAGGAAGAACATCGTGGCT 58.965 45.455 0.00 0.00 0.00 4.75
2340 6637 3.460857 AGATAGGAAGAACATCGTGGC 57.539 47.619 0.00 0.00 0.00 5.01
2341 6638 5.459107 CGTTAAGATAGGAAGAACATCGTGG 59.541 44.000 0.00 0.00 0.00 4.94
2342 6639 5.459107 CCGTTAAGATAGGAAGAACATCGTG 59.541 44.000 0.00 0.00 0.00 4.35
2343 6640 5.589192 CCGTTAAGATAGGAAGAACATCGT 58.411 41.667 0.00 0.00 0.00 3.73
2344 6641 4.444720 GCCGTTAAGATAGGAAGAACATCG 59.555 45.833 0.00 0.00 0.00 3.84
2345 6642 4.444720 CGCCGTTAAGATAGGAAGAACATC 59.555 45.833 0.00 0.00 0.00 3.06
2346 6643 4.369182 CGCCGTTAAGATAGGAAGAACAT 58.631 43.478 0.00 0.00 0.00 2.71
2347 6644 3.777478 CGCCGTTAAGATAGGAAGAACA 58.223 45.455 0.00 0.00 0.00 3.18
2348 6645 2.538861 GCGCCGTTAAGATAGGAAGAAC 59.461 50.000 0.00 0.00 0.00 3.01
2349 6646 2.166870 TGCGCCGTTAAGATAGGAAGAA 59.833 45.455 4.18 0.00 0.00 2.52
2350 6647 1.752498 TGCGCCGTTAAGATAGGAAGA 59.248 47.619 4.18 0.00 0.00 2.87
2351 6648 2.218953 TGCGCCGTTAAGATAGGAAG 57.781 50.000 4.18 0.00 0.00 3.46
2352 6649 2.676632 TTGCGCCGTTAAGATAGGAA 57.323 45.000 4.18 0.00 0.00 3.36
2353 6650 2.166870 TCTTTGCGCCGTTAAGATAGGA 59.833 45.455 4.18 0.00 0.00 2.94
2354 6651 2.540101 CTCTTTGCGCCGTTAAGATAGG 59.460 50.000 4.18 0.00 0.00 2.57
2355 6652 2.540101 CCTCTTTGCGCCGTTAAGATAG 59.460 50.000 4.18 0.48 0.00 2.08
2356 6653 2.546778 CCTCTTTGCGCCGTTAAGATA 58.453 47.619 4.18 0.00 0.00 1.98
2357 6654 1.369625 CCTCTTTGCGCCGTTAAGAT 58.630 50.000 4.18 0.00 0.00 2.40
2358 6655 0.672401 CCCTCTTTGCGCCGTTAAGA 60.672 55.000 4.18 8.00 0.00 2.10
2359 6656 1.644786 CCCCTCTTTGCGCCGTTAAG 61.645 60.000 4.18 3.55 0.00 1.85
2360 6657 1.673009 CCCCTCTTTGCGCCGTTAA 60.673 57.895 4.18 0.00 0.00 2.01
2361 6658 2.046700 CCCCTCTTTGCGCCGTTA 60.047 61.111 4.18 0.00 0.00 3.18
2366 6663 3.070576 ATTGGCCCCTCTTTGCGC 61.071 61.111 0.00 0.00 0.00 6.09
2367 6664 2.887360 CATTGGCCCCTCTTTGCG 59.113 61.111 0.00 0.00 0.00 4.85
2368 6665 1.829523 TTGCATTGGCCCCTCTTTGC 61.830 55.000 0.00 0.75 40.13 3.68
2369 6666 0.248289 CTTGCATTGGCCCCTCTTTG 59.752 55.000 0.00 0.00 40.13 2.77
2370 6667 0.906282 CCTTGCATTGGCCCCTCTTT 60.906 55.000 0.00 0.00 40.13 2.52
2371 6668 1.305549 CCTTGCATTGGCCCCTCTT 60.306 57.895 0.00 0.00 40.13 2.85
2372 6669 1.587522 ATCCTTGCATTGGCCCCTCT 61.588 55.000 0.00 0.00 40.13 3.69
2373 6670 0.185901 TATCCTTGCATTGGCCCCTC 59.814 55.000 0.00 0.00 40.13 4.30
2374 6671 0.186873 CTATCCTTGCATTGGCCCCT 59.813 55.000 0.00 0.00 40.13 4.79
2375 6672 0.106015 ACTATCCTTGCATTGGCCCC 60.106 55.000 0.00 0.00 40.13 5.80
2376 6673 1.780503 AACTATCCTTGCATTGGCCC 58.219 50.000 0.00 0.00 40.13 5.80
2377 6674 2.739609 GCAAACTATCCTTGCATTGGCC 60.740 50.000 0.00 0.00 46.78 5.36
2378 6675 2.543641 GCAAACTATCCTTGCATTGGC 58.456 47.619 2.79 0.00 46.78 4.52
2385 6682 2.679837 ACGCATCTGCAAACTATCCTTG 59.320 45.455 2.72 0.00 42.21 3.61
2386 6683 2.991250 ACGCATCTGCAAACTATCCTT 58.009 42.857 2.72 0.00 42.21 3.36
2387 6684 2.679837 CAACGCATCTGCAAACTATCCT 59.320 45.455 2.72 0.00 42.21 3.24
2388 6685 2.223340 CCAACGCATCTGCAAACTATCC 60.223 50.000 2.72 0.00 42.21 2.59
2389 6686 2.223340 CCCAACGCATCTGCAAACTATC 60.223 50.000 2.72 0.00 42.21 2.08
2390 6687 1.745087 CCCAACGCATCTGCAAACTAT 59.255 47.619 2.72 0.00 42.21 2.12
2391 6688 1.164411 CCCAACGCATCTGCAAACTA 58.836 50.000 2.72 0.00 42.21 2.24
2392 6689 1.526575 CCCCAACGCATCTGCAAACT 61.527 55.000 2.72 0.00 42.21 2.66
2393 6690 1.080569 CCCCAACGCATCTGCAAAC 60.081 57.895 2.72 0.00 42.21 2.93
2394 6691 2.929903 GCCCCAACGCATCTGCAAA 61.930 57.895 2.72 0.00 42.21 3.68
2395 6692 3.372730 GCCCCAACGCATCTGCAA 61.373 61.111 2.72 0.00 42.21 4.08
2404 6701 4.705519 CAAAGCAGCGCCCCAACG 62.706 66.667 2.29 0.00 0.00 4.10
2405 6702 4.362476 CCAAAGCAGCGCCCCAAC 62.362 66.667 2.29 0.00 0.00 3.77
2416 6713 1.581447 CGACCAAAGAGCCCAAAGC 59.419 57.895 0.00 0.00 44.25 3.51
2417 6714 0.537371 ACCGACCAAAGAGCCCAAAG 60.537 55.000 0.00 0.00 0.00 2.77
2418 6715 0.106419 AACCGACCAAAGAGCCCAAA 60.106 50.000 0.00 0.00 0.00 3.28
2419 6716 0.106419 AAACCGACCAAAGAGCCCAA 60.106 50.000 0.00 0.00 0.00 4.12
2420 6717 0.821711 CAAACCGACCAAAGAGCCCA 60.822 55.000 0.00 0.00 0.00 5.36
2421 6718 1.524008 CCAAACCGACCAAAGAGCCC 61.524 60.000 0.00 0.00 0.00 5.19
2422 6719 0.536460 TCCAAACCGACCAAAGAGCC 60.536 55.000 0.00 0.00 0.00 4.70
2423 6720 1.001706 GTTCCAAACCGACCAAAGAGC 60.002 52.381 0.00 0.00 0.00 4.09
2424 6721 2.294074 TGTTCCAAACCGACCAAAGAG 58.706 47.619 0.00 0.00 0.00 2.85
2425 6722 2.421751 TGTTCCAAACCGACCAAAGA 57.578 45.000 0.00 0.00 0.00 2.52
2426 6723 3.512033 TTTGTTCCAAACCGACCAAAG 57.488 42.857 0.00 0.00 0.00 2.77
2427 6724 3.955650 TTTTGTTCCAAACCGACCAAA 57.044 38.095 0.00 0.00 0.00 3.28
2428 6725 4.473477 AATTTTGTTCCAAACCGACCAA 57.527 36.364 0.00 0.00 0.00 3.67
2429 6726 4.497674 CGTAATTTTGTTCCAAACCGACCA 60.498 41.667 0.00 0.00 0.00 4.02
2430 6727 3.976306 CGTAATTTTGTTCCAAACCGACC 59.024 43.478 0.00 0.00 0.00 4.79
2431 6728 3.976306 CCGTAATTTTGTTCCAAACCGAC 59.024 43.478 0.00 0.00 0.00 4.79
2432 6729 3.631227 ACCGTAATTTTGTTCCAAACCGA 59.369 39.130 0.00 0.00 0.00 4.69
2433 6730 3.967401 ACCGTAATTTTGTTCCAAACCG 58.033 40.909 0.00 0.00 0.00 4.44
2434 6731 5.349809 TCAACCGTAATTTTGTTCCAAACC 58.650 37.500 0.00 0.00 0.00 3.27
2435 6732 5.051307 GCTCAACCGTAATTTTGTTCCAAAC 60.051 40.000 0.00 0.00 0.00 2.93
2436 6733 5.044558 GCTCAACCGTAATTTTGTTCCAAA 58.955 37.500 0.00 0.00 0.00 3.28
2437 6734 4.098044 TGCTCAACCGTAATTTTGTTCCAA 59.902 37.500 0.00 0.00 0.00 3.53
2438 6735 3.632604 TGCTCAACCGTAATTTTGTTCCA 59.367 39.130 0.00 0.00 0.00 3.53
2439 6736 3.978855 GTGCTCAACCGTAATTTTGTTCC 59.021 43.478 0.00 0.00 0.00 3.62
2440 6737 4.602995 TGTGCTCAACCGTAATTTTGTTC 58.397 39.130 0.00 0.00 0.00 3.18
2441 6738 4.640789 TGTGCTCAACCGTAATTTTGTT 57.359 36.364 0.00 0.00 0.00 2.83
2442 6739 4.097286 ACTTGTGCTCAACCGTAATTTTGT 59.903 37.500 0.00 0.00 0.00 2.83
2443 6740 4.606961 ACTTGTGCTCAACCGTAATTTTG 58.393 39.130 0.00 0.00 0.00 2.44
2444 6741 4.911514 ACTTGTGCTCAACCGTAATTTT 57.088 36.364 0.00 0.00 0.00 1.82
2445 6742 4.261447 GGAACTTGTGCTCAACCGTAATTT 60.261 41.667 0.00 0.00 0.00 1.82
2446 6743 3.252458 GGAACTTGTGCTCAACCGTAATT 59.748 43.478 0.00 0.00 0.00 1.40
2447 6744 2.812011 GGAACTTGTGCTCAACCGTAAT 59.188 45.455 0.00 0.00 0.00 1.89
2448 6745 2.215196 GGAACTTGTGCTCAACCGTAA 58.785 47.619 0.00 0.00 0.00 3.18
2449 6746 1.541670 GGGAACTTGTGCTCAACCGTA 60.542 52.381 0.00 0.00 0.00 4.02
2450 6747 0.818040 GGGAACTTGTGCTCAACCGT 60.818 55.000 0.00 0.00 0.00 4.83
2451 6748 1.841663 CGGGAACTTGTGCTCAACCG 61.842 60.000 12.08 12.08 34.77 4.44
2452 6749 1.515521 CCGGGAACTTGTGCTCAACC 61.516 60.000 0.00 0.00 0.00 3.77
2453 6750 1.949257 CCGGGAACTTGTGCTCAAC 59.051 57.895 0.00 0.00 0.00 3.18
2454 6751 1.896660 GCCGGGAACTTGTGCTCAA 60.897 57.895 2.18 0.66 0.00 3.02
2455 6752 2.281484 GCCGGGAACTTGTGCTCA 60.281 61.111 2.18 0.00 0.00 4.26
2456 6753 3.056328 GGCCGGGAACTTGTGCTC 61.056 66.667 2.18 0.00 0.00 4.26
2457 6754 4.660938 GGGCCGGGAACTTGTGCT 62.661 66.667 2.18 0.00 0.00 4.40
2458 6755 4.966787 TGGGCCGGGAACTTGTGC 62.967 66.667 2.18 0.00 0.00 4.57
2459 6756 2.983592 GTGGGCCGGGAACTTGTG 60.984 66.667 2.18 0.00 0.00 3.33
2460 6757 4.280019 GGTGGGCCGGGAACTTGT 62.280 66.667 2.18 0.00 0.00 3.16
2470 6767 3.553095 GATATCAGCGGGGTGGGCC 62.553 68.421 0.00 0.00 0.00 5.80
2471 6768 2.032681 GATATCAGCGGGGTGGGC 59.967 66.667 0.00 0.00 0.00 5.36
2472 6769 0.036010 GATGATATCAGCGGGGTGGG 60.036 60.000 11.78 0.00 0.00 4.61
2473 6770 0.979665 AGATGATATCAGCGGGGTGG 59.020 55.000 14.93 0.00 37.34 4.61
2474 6771 2.037641 TGAAGATGATATCAGCGGGGTG 59.962 50.000 14.93 0.00 37.34 4.61
2475 6772 2.329267 TGAAGATGATATCAGCGGGGT 58.671 47.619 14.93 2.63 37.34 4.95
2476 6773 3.407424 TTGAAGATGATATCAGCGGGG 57.593 47.619 14.93 0.00 37.34 5.73
2477 6774 4.758674 ACATTTGAAGATGATATCAGCGGG 59.241 41.667 14.93 4.20 37.34 6.13
2478 6775 5.467735 TGACATTTGAAGATGATATCAGCGG 59.532 40.000 14.93 3.58 37.34 5.52
2479 6776 6.018507 TGTGACATTTGAAGATGATATCAGCG 60.019 38.462 14.93 2.16 37.34 5.18
2480 6777 7.255491 TGTGACATTTGAAGATGATATCAGC 57.745 36.000 13.13 13.13 0.00 4.26
2486 6783 9.991906 AAGAAAAATGTGACATTTGAAGATGAT 57.008 25.926 22.71 3.29 0.00 2.45
2487 6784 9.467258 GAAGAAAAATGTGACATTTGAAGATGA 57.533 29.630 22.71 0.00 0.00 2.92
2488 6785 9.251792 TGAAGAAAAATGTGACATTTGAAGATG 57.748 29.630 22.71 0.00 0.00 2.90
2489 6786 9.472361 CTGAAGAAAAATGTGACATTTGAAGAT 57.528 29.630 22.71 9.66 0.00 2.40
2490 6787 8.861033 CTGAAGAAAAATGTGACATTTGAAGA 57.139 30.769 22.71 6.07 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.