Multiple sequence alignment - TraesCS2A01G541600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G541600 chr2A 100.000 3164 0 0 1 3164 752883742 752880579 0.000000e+00 5843.0
1 TraesCS2A01G541600 chr2A 97.647 425 10 0 1 425 752902593 752902169 0.000000e+00 730.0
2 TraesCS2A01G541600 chr1A 97.611 2595 62 0 570 3164 13813935 13811341 0.000000e+00 4449.0
3 TraesCS2A01G541600 chr1A 97.496 2596 62 2 571 3164 34337446 34340040 0.000000e+00 4431.0
4 TraesCS2A01G541600 chr1A 97.224 2594 72 0 571 3164 566074874 566072281 0.000000e+00 4392.0
5 TraesCS2A01G541600 chr1A 96.721 427 14 0 1 427 44449086 44449512 0.000000e+00 712.0
6 TraesCS2A01G541600 chr6A 97.271 2602 58 5 571 3164 71102124 71099528 0.000000e+00 4399.0
7 TraesCS2A01G541600 chr6A 96.737 429 13 1 2 430 530950731 530950304 0.000000e+00 713.0
8 TraesCS2A01G541600 chr6A 96.941 425 11 1 1 425 572126745 572126323 0.000000e+00 712.0
9 TraesCS2A01G541600 chr4A 96.711 2615 61 10 571 3164 628881991 628884601 0.000000e+00 4329.0
10 TraesCS2A01G541600 chr4A 97.183 426 10 2 1 425 563068987 563068563 0.000000e+00 719.0
11 TraesCS2A01G541600 chr4A 96.503 429 14 1 1 428 605072746 605072318 0.000000e+00 708.0
12 TraesCS2A01G541600 chr7A 96.482 2615 67 5 571 3164 576403832 576406442 0.000000e+00 4296.0
13 TraesCS2A01G541600 chr7A 96.291 2615 61 8 571 3164 658706221 658703622 0.000000e+00 4259.0
14 TraesCS2A01G541600 chr7A 96.706 425 14 0 1 425 658737817 658738241 0.000000e+00 708.0
15 TraesCS2A01G541600 chr7A 96.512 430 9 3 1 425 138105163 138104735 0.000000e+00 706.0
16 TraesCS2A01G541600 chr5A 95.905 2613 77 11 571 3162 697625373 697627976 0.000000e+00 4205.0
17 TraesCS2A01G541600 chr5A 97.209 2114 54 3 571 2684 546845988 546848096 0.000000e+00 3572.0
18 TraesCS2A01G541600 chr5D 94.421 2617 69 9 570 3164 356119497 356116936 0.000000e+00 3952.0
19 TraesCS2A01G541600 chr5D 93.518 2638 90 23 571 3164 52374527 52371927 0.000000e+00 3849.0
20 TraesCS2A01G541600 chr4D 94.086 2638 68 9 571 3164 392724846 392722253 0.000000e+00 3927.0
21 TraesCS2A01G541600 chr7D 93.366 2638 73 10 571 3164 634767843 634770422 0.000000e+00 3808.0
22 TraesCS2A01G541600 chr7D 92.800 500 15 1 2686 3164 445243613 445244112 0.000000e+00 704.0
23 TraesCS2A01G541600 chr3A 97.412 425 11 0 1 425 691840270 691839846 0.000000e+00 725.0
24 TraesCS2A01G541600 chr2B 87.500 120 6 4 425 544 762003341 762003231 2.560000e-26 130.0
25 TraesCS2A01G541600 chr2B 79.470 151 10 13 425 570 761996020 761995886 1.560000e-13 87.9
26 TraesCS2A01G541600 chr2D 91.489 47 1 3 498 544 621070930 621070887 9.480000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G541600 chr2A 752880579 752883742 3163 True 5843 5843 100.000 1 3164 1 chr2A.!!$R1 3163
1 TraesCS2A01G541600 chr1A 13811341 13813935 2594 True 4449 4449 97.611 570 3164 1 chr1A.!!$R1 2594
2 TraesCS2A01G541600 chr1A 34337446 34340040 2594 False 4431 4431 97.496 571 3164 1 chr1A.!!$F1 2593
3 TraesCS2A01G541600 chr1A 566072281 566074874 2593 True 4392 4392 97.224 571 3164 1 chr1A.!!$R2 2593
4 TraesCS2A01G541600 chr6A 71099528 71102124 2596 True 4399 4399 97.271 571 3164 1 chr6A.!!$R1 2593
5 TraesCS2A01G541600 chr4A 628881991 628884601 2610 False 4329 4329 96.711 571 3164 1 chr4A.!!$F1 2593
6 TraesCS2A01G541600 chr7A 576403832 576406442 2610 False 4296 4296 96.482 571 3164 1 chr7A.!!$F1 2593
7 TraesCS2A01G541600 chr7A 658703622 658706221 2599 True 4259 4259 96.291 571 3164 1 chr7A.!!$R2 2593
8 TraesCS2A01G541600 chr5A 697625373 697627976 2603 False 4205 4205 95.905 571 3162 1 chr5A.!!$F2 2591
9 TraesCS2A01G541600 chr5A 546845988 546848096 2108 False 3572 3572 97.209 571 2684 1 chr5A.!!$F1 2113
10 TraesCS2A01G541600 chr5D 356116936 356119497 2561 True 3952 3952 94.421 570 3164 1 chr5D.!!$R2 2594
11 TraesCS2A01G541600 chr5D 52371927 52374527 2600 True 3849 3849 93.518 571 3164 1 chr5D.!!$R1 2593
12 TraesCS2A01G541600 chr4D 392722253 392724846 2593 True 3927 3927 94.086 571 3164 1 chr4D.!!$R1 2593
13 TraesCS2A01G541600 chr7D 634767843 634770422 2579 False 3808 3808 93.366 571 3164 1 chr7D.!!$F2 2593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 218 0.032267 GGAGTTCGGGGATCGTCATC 59.968 60.0 0.00 0.00 40.32 2.92 F
367 368 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.0 3.79 3.79 38.76 3.96 F
387 388 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.0 15.81 0.00 43.20 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2108 2125 1.067354 GCTTTTCCTTGCACCCATGAG 60.067 52.381 0.0 0.0 0.0 2.90 R
2141 2158 3.259374 TCACTCCTCCATGACAACTTCTC 59.741 47.826 0.0 0.0 0.0 2.87 R
2756 2854 1.065636 AGAGGTACGACGATCTGGACA 60.066 52.381 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.480133 ATACGGAGGCAGGGGCAC 61.480 66.667 0.00 0.00 43.71 5.01
30 31 3.310652 GGCACCCCCTAGAGACAC 58.689 66.667 0.00 0.00 0.00 3.67
31 32 1.612442 GGCACCCCCTAGAGACACA 60.612 63.158 0.00 0.00 0.00 3.72
32 33 1.198759 GGCACCCCCTAGAGACACAA 61.199 60.000 0.00 0.00 0.00 3.33
33 34 0.250513 GCACCCCCTAGAGACACAAG 59.749 60.000 0.00 0.00 0.00 3.16
34 35 1.645710 CACCCCCTAGAGACACAAGT 58.354 55.000 0.00 0.00 0.00 3.16
35 36 1.978580 CACCCCCTAGAGACACAAGTT 59.021 52.381 0.00 0.00 0.00 2.66
36 37 1.978580 ACCCCCTAGAGACACAAGTTG 59.021 52.381 0.00 0.00 0.00 3.16
37 38 2.257207 CCCCCTAGAGACACAAGTTGA 58.743 52.381 10.54 0.00 0.00 3.18
38 39 2.840651 CCCCCTAGAGACACAAGTTGAT 59.159 50.000 10.54 0.00 0.00 2.57
39 40 3.118592 CCCCCTAGAGACACAAGTTGATC 60.119 52.174 10.54 6.82 0.00 2.92
40 41 3.118592 CCCCTAGAGACACAAGTTGATCC 60.119 52.174 10.54 0.00 0.00 3.36
41 42 3.515502 CCCTAGAGACACAAGTTGATCCA 59.484 47.826 10.54 0.00 0.00 3.41
42 43 4.499183 CCTAGAGACACAAGTTGATCCAC 58.501 47.826 10.54 4.65 0.00 4.02
43 44 3.032017 AGAGACACAAGTTGATCCACG 57.968 47.619 10.54 0.00 0.00 4.94
44 45 2.365617 AGAGACACAAGTTGATCCACGT 59.634 45.455 10.54 0.00 0.00 4.49
45 46 2.476619 GAGACACAAGTTGATCCACGTG 59.523 50.000 10.54 9.08 32.90 4.49
46 47 2.102420 AGACACAAGTTGATCCACGTGA 59.898 45.455 19.30 3.36 31.33 4.35
47 48 3.067106 GACACAAGTTGATCCACGTGAT 58.933 45.455 19.30 8.71 36.01 3.06
60 61 5.791336 TCCACGTGATCATATTCTTAGCT 57.209 39.130 19.30 0.00 0.00 3.32
61 62 5.532557 TCCACGTGATCATATTCTTAGCTG 58.467 41.667 19.30 0.00 0.00 4.24
62 63 5.069119 TCCACGTGATCATATTCTTAGCTGT 59.931 40.000 19.30 0.00 0.00 4.40
63 64 5.176406 CCACGTGATCATATTCTTAGCTGTG 59.824 44.000 19.30 0.00 0.00 3.66
64 65 5.750547 CACGTGATCATATTCTTAGCTGTGT 59.249 40.000 10.90 0.00 0.00 3.72
65 66 5.750547 ACGTGATCATATTCTTAGCTGTGTG 59.249 40.000 0.00 0.00 0.00 3.82
66 67 5.750547 CGTGATCATATTCTTAGCTGTGTGT 59.249 40.000 0.00 0.00 0.00 3.72
67 68 6.292008 CGTGATCATATTCTTAGCTGTGTGTG 60.292 42.308 0.00 0.00 0.00 3.82
68 69 6.018425 GTGATCATATTCTTAGCTGTGTGTGG 60.018 42.308 0.00 0.00 0.00 4.17
69 70 5.420725 TCATATTCTTAGCTGTGTGTGGT 57.579 39.130 0.00 0.00 0.00 4.16
70 71 5.178061 TCATATTCTTAGCTGTGTGTGGTG 58.822 41.667 0.00 0.00 0.00 4.17
71 72 1.593196 TTCTTAGCTGTGTGTGGTGC 58.407 50.000 0.00 0.00 0.00 5.01
72 73 0.250295 TCTTAGCTGTGTGTGGTGCC 60.250 55.000 0.00 0.00 0.00 5.01
73 74 1.228124 TTAGCTGTGTGTGGTGCCC 60.228 57.895 0.00 0.00 0.00 5.36
74 75 2.690653 TTAGCTGTGTGTGGTGCCCC 62.691 60.000 0.00 0.00 0.00 5.80
76 77 3.889692 CTGTGTGTGGTGCCCCCT 61.890 66.667 0.00 0.00 0.00 4.79
77 78 3.425014 TGTGTGTGGTGCCCCCTT 61.425 61.111 0.00 0.00 0.00 3.95
78 79 2.597510 GTGTGTGGTGCCCCCTTC 60.598 66.667 0.00 0.00 0.00 3.46
79 80 3.897122 TGTGTGGTGCCCCCTTCC 61.897 66.667 0.00 0.00 0.00 3.46
80 81 3.897122 GTGTGGTGCCCCCTTCCA 61.897 66.667 0.00 0.00 0.00 3.53
85 86 3.422204 GTGCCCCCTTCCACCATA 58.578 61.111 0.00 0.00 0.00 2.74
86 87 1.227383 GTGCCCCCTTCCACCATAG 59.773 63.158 0.00 0.00 0.00 2.23
87 88 1.230149 TGCCCCCTTCCACCATAGT 60.230 57.895 0.00 0.00 0.00 2.12
88 89 1.279025 TGCCCCCTTCCACCATAGTC 61.279 60.000 0.00 0.00 0.00 2.59
89 90 1.996070 GCCCCCTTCCACCATAGTCC 61.996 65.000 0.00 0.00 0.00 3.85
90 91 0.327576 CCCCCTTCCACCATAGTCCT 60.328 60.000 0.00 0.00 0.00 3.85
91 92 1.132500 CCCCTTCCACCATAGTCCTC 58.868 60.000 0.00 0.00 0.00 3.71
92 93 0.753262 CCCTTCCACCATAGTCCTCG 59.247 60.000 0.00 0.00 0.00 4.63
93 94 1.688311 CCCTTCCACCATAGTCCTCGA 60.688 57.143 0.00 0.00 0.00 4.04
94 95 2.320781 CCTTCCACCATAGTCCTCGAT 58.679 52.381 0.00 0.00 0.00 3.59
95 96 3.497332 CCTTCCACCATAGTCCTCGATA 58.503 50.000 0.00 0.00 0.00 2.92
96 97 3.895656 CCTTCCACCATAGTCCTCGATAA 59.104 47.826 0.00 0.00 0.00 1.75
97 98 4.528596 CCTTCCACCATAGTCCTCGATAAT 59.471 45.833 0.00 0.00 0.00 1.28
98 99 5.715279 CCTTCCACCATAGTCCTCGATAATA 59.285 44.000 0.00 0.00 0.00 0.98
99 100 6.381420 CCTTCCACCATAGTCCTCGATAATAT 59.619 42.308 0.00 0.00 0.00 1.28
100 101 7.406031 TTCCACCATAGTCCTCGATAATATC 57.594 40.000 0.00 0.00 0.00 1.63
116 117 7.687005 GATAATATCGTATCAGTGCTTAGGC 57.313 40.000 0.00 0.00 33.62 3.93
117 118 2.423926 ATCGTATCAGTGCTTAGGCG 57.576 50.000 0.00 0.00 42.25 5.52
118 119 1.385528 TCGTATCAGTGCTTAGGCGA 58.614 50.000 0.00 0.00 42.25 5.54
119 120 1.746787 TCGTATCAGTGCTTAGGCGAA 59.253 47.619 0.00 0.00 42.25 4.70
120 121 2.120232 CGTATCAGTGCTTAGGCGAAG 58.880 52.381 2.68 2.68 42.25 3.79
133 134 4.513519 CGAAGCCCTGCGACATTA 57.486 55.556 0.00 0.00 0.00 1.90
134 135 2.301505 CGAAGCCCTGCGACATTAG 58.698 57.895 0.00 0.00 0.00 1.73
135 136 0.460284 CGAAGCCCTGCGACATTAGT 60.460 55.000 0.00 0.00 0.00 2.24
136 137 1.202371 CGAAGCCCTGCGACATTAGTA 60.202 52.381 0.00 0.00 0.00 1.82
137 138 2.202566 GAAGCCCTGCGACATTAGTAC 58.797 52.381 0.00 0.00 0.00 2.73
138 139 0.102481 AGCCCTGCGACATTAGTACG 59.898 55.000 0.00 0.00 0.00 3.67
139 140 0.179119 GCCCTGCGACATTAGTACGT 60.179 55.000 0.00 0.00 0.00 3.57
140 141 1.836383 CCCTGCGACATTAGTACGTC 58.164 55.000 0.00 0.00 0.00 4.34
141 142 1.133598 CCCTGCGACATTAGTACGTCA 59.866 52.381 0.00 0.00 32.24 4.35
142 143 2.416296 CCCTGCGACATTAGTACGTCAA 60.416 50.000 0.00 0.00 32.24 3.18
143 144 2.852413 CCTGCGACATTAGTACGTCAAG 59.148 50.000 0.00 0.00 32.24 3.02
144 145 3.427098 CCTGCGACATTAGTACGTCAAGA 60.427 47.826 0.00 0.00 32.24 3.02
145 146 4.352039 CTGCGACATTAGTACGTCAAGAT 58.648 43.478 0.00 0.00 32.24 2.40
146 147 4.348656 TGCGACATTAGTACGTCAAGATC 58.651 43.478 0.00 0.00 32.24 2.75
147 148 3.417969 GCGACATTAGTACGTCAAGATCG 59.582 47.826 0.00 0.43 32.24 3.69
148 149 4.585364 CGACATTAGTACGTCAAGATCGT 58.415 43.478 0.00 0.00 43.86 3.73
149 150 4.665292 CGACATTAGTACGTCAAGATCGTC 59.335 45.833 0.00 0.00 41.72 4.20
150 151 5.556355 ACATTAGTACGTCAAGATCGTCA 57.444 39.130 0.00 0.00 41.72 4.35
151 152 5.330295 ACATTAGTACGTCAAGATCGTCAC 58.670 41.667 0.00 0.00 41.72 3.67
152 153 2.915738 AGTACGTCAAGATCGTCACC 57.084 50.000 0.00 0.00 41.72 4.02
153 154 2.156917 AGTACGTCAAGATCGTCACCA 58.843 47.619 0.00 0.00 41.72 4.17
154 155 2.095364 AGTACGTCAAGATCGTCACCAC 60.095 50.000 0.00 0.00 41.72 4.16
156 157 1.674611 CGTCAAGATCGTCACCACGC 61.675 60.000 0.00 0.00 46.28 5.34
157 158 1.080093 TCAAGATCGTCACCACGCC 60.080 57.895 0.00 0.00 46.28 5.68
158 159 2.126071 AAGATCGTCACCACGCCG 60.126 61.111 0.00 0.00 46.28 6.46
159 160 2.927580 AAGATCGTCACCACGCCGT 61.928 57.895 0.00 0.00 46.28 5.68
160 161 2.814183 AAGATCGTCACCACGCCGTC 62.814 60.000 0.00 0.00 46.28 4.79
161 162 4.771356 ATCGTCACCACGCCGTCG 62.771 66.667 0.00 0.00 46.28 5.12
175 176 3.843985 GTCGTGCTGACGGAACTC 58.156 61.111 0.00 0.00 46.11 3.01
176 177 1.286260 GTCGTGCTGACGGAACTCT 59.714 57.895 0.00 0.00 46.11 3.24
177 178 0.318784 GTCGTGCTGACGGAACTCTT 60.319 55.000 0.00 0.00 46.11 2.85
178 179 0.039437 TCGTGCTGACGGAACTCTTC 60.039 55.000 0.00 0.00 46.11 2.87
179 180 1.009389 CGTGCTGACGGAACTCTTCC 61.009 60.000 0.00 0.00 46.62 3.46
187 188 2.363297 GGAACTCTTCCCCGACACT 58.637 57.895 0.00 0.00 44.30 3.55
188 189 0.685660 GGAACTCTTCCCCGACACTT 59.314 55.000 0.00 0.00 44.30 3.16
189 190 1.071857 GGAACTCTTCCCCGACACTTT 59.928 52.381 0.00 0.00 44.30 2.66
190 191 2.143925 GAACTCTTCCCCGACACTTTG 58.856 52.381 0.00 0.00 0.00 2.77
191 192 0.250338 ACTCTTCCCCGACACTTTGC 60.250 55.000 0.00 0.00 0.00 3.68
192 193 0.035458 CTCTTCCCCGACACTTTGCT 59.965 55.000 0.00 0.00 0.00 3.91
193 194 0.250295 TCTTCCCCGACACTTTGCTG 60.250 55.000 0.00 0.00 0.00 4.41
194 195 1.228124 TTCCCCGACACTTTGCTGG 60.228 57.895 0.00 0.00 0.00 4.85
195 196 1.701031 TTCCCCGACACTTTGCTGGA 61.701 55.000 0.00 0.00 0.00 3.86
196 197 1.002134 CCCCGACACTTTGCTGGAT 60.002 57.895 0.00 0.00 0.00 3.41
197 198 1.026718 CCCCGACACTTTGCTGGATC 61.027 60.000 0.00 0.00 0.00 3.36
198 199 1.361668 CCCGACACTTTGCTGGATCG 61.362 60.000 0.00 0.00 0.00 3.69
199 200 1.361668 CCGACACTTTGCTGGATCGG 61.362 60.000 0.00 0.00 42.69 4.18
200 201 0.389817 CGACACTTTGCTGGATCGGA 60.390 55.000 0.00 0.00 0.00 4.55
201 202 1.363744 GACACTTTGCTGGATCGGAG 58.636 55.000 0.00 0.00 0.00 4.63
202 203 0.687354 ACACTTTGCTGGATCGGAGT 59.313 50.000 0.00 0.00 0.00 3.85
203 204 1.072331 ACACTTTGCTGGATCGGAGTT 59.928 47.619 0.00 0.00 0.00 3.01
204 205 1.734465 CACTTTGCTGGATCGGAGTTC 59.266 52.381 0.00 0.00 0.00 3.01
205 206 1.002366 CTTTGCTGGATCGGAGTTCG 58.998 55.000 0.00 0.00 40.90 3.95
206 207 0.391130 TTTGCTGGATCGGAGTTCGG 60.391 55.000 0.00 0.00 39.77 4.30
207 208 2.107141 GCTGGATCGGAGTTCGGG 59.893 66.667 0.00 0.00 39.77 5.14
208 209 2.815308 CTGGATCGGAGTTCGGGG 59.185 66.667 0.00 0.00 39.77 5.73
209 210 1.756950 CTGGATCGGAGTTCGGGGA 60.757 63.158 0.00 0.00 39.77 4.81
210 211 1.075525 TGGATCGGAGTTCGGGGAT 60.076 57.895 0.00 0.00 39.77 3.85
211 212 1.113517 TGGATCGGAGTTCGGGGATC 61.114 60.000 0.00 0.00 39.77 3.36
212 213 1.286260 GATCGGAGTTCGGGGATCG 59.714 63.158 0.00 0.00 39.77 3.69
213 214 1.453762 GATCGGAGTTCGGGGATCGT 61.454 60.000 0.00 0.00 40.32 3.73
214 215 1.453762 ATCGGAGTTCGGGGATCGTC 61.454 60.000 0.00 0.00 40.32 4.20
215 216 2.412323 CGGAGTTCGGGGATCGTCA 61.412 63.158 0.00 0.00 40.32 4.35
216 217 1.735376 CGGAGTTCGGGGATCGTCAT 61.735 60.000 0.00 0.00 40.32 3.06
217 218 0.032267 GGAGTTCGGGGATCGTCATC 59.968 60.000 0.00 0.00 40.32 2.92
218 219 0.317938 GAGTTCGGGGATCGTCATCG 60.318 60.000 0.00 0.00 40.32 3.84
227 228 4.765611 TCGTCATCGAGCTGAACG 57.234 55.556 0.00 0.00 41.35 3.95
228 229 1.873863 TCGTCATCGAGCTGAACGT 59.126 52.632 0.00 0.00 41.35 3.99
229 230 0.454452 TCGTCATCGAGCTGAACGTG 60.454 55.000 0.00 0.00 41.35 4.49
230 231 0.729478 CGTCATCGAGCTGAACGTGT 60.729 55.000 0.00 0.00 39.71 4.49
231 232 0.710567 GTCATCGAGCTGAACGTGTG 59.289 55.000 0.00 0.00 0.00 3.82
232 233 1.008875 TCATCGAGCTGAACGTGTGC 61.009 55.000 0.00 0.00 0.00 4.57
233 234 1.010935 CATCGAGCTGAACGTGTGCT 61.011 55.000 9.46 9.46 40.02 4.40
234 235 0.526211 ATCGAGCTGAACGTGTGCTA 59.474 50.000 9.63 0.00 37.16 3.49
235 236 0.109735 TCGAGCTGAACGTGTGCTAG 60.110 55.000 9.63 9.87 37.16 3.42
236 237 0.109735 CGAGCTGAACGTGTGCTAGA 60.110 55.000 9.63 0.00 37.16 2.43
237 238 1.666023 CGAGCTGAACGTGTGCTAGAA 60.666 52.381 9.63 0.00 37.16 2.10
238 239 1.721926 GAGCTGAACGTGTGCTAGAAC 59.278 52.381 9.63 0.00 37.16 3.01
239 240 1.341531 AGCTGAACGTGTGCTAGAACT 59.658 47.619 1.64 0.00 35.05 3.01
240 241 1.721926 GCTGAACGTGTGCTAGAACTC 59.278 52.381 1.64 0.00 0.00 3.01
241 242 1.979469 CTGAACGTGTGCTAGAACTCG 59.021 52.381 21.00 21.00 41.49 4.18
242 243 1.335597 TGAACGTGTGCTAGAACTCGG 60.336 52.381 24.99 10.58 40.39 4.63
243 244 0.956633 AACGTGTGCTAGAACTCGGA 59.043 50.000 24.99 0.00 40.39 4.55
244 245 0.522180 ACGTGTGCTAGAACTCGGAG 59.478 55.000 24.99 2.83 40.39 4.63
245 246 0.179161 CGTGTGCTAGAACTCGGAGG 60.179 60.000 16.08 0.00 34.36 4.30
246 247 0.889306 GTGTGCTAGAACTCGGAGGT 59.111 55.000 10.23 1.51 0.00 3.85
247 248 0.888619 TGTGCTAGAACTCGGAGGTG 59.111 55.000 10.23 0.00 0.00 4.00
248 249 0.458716 GTGCTAGAACTCGGAGGTGC 60.459 60.000 10.23 3.39 0.00 5.01
249 250 1.142097 GCTAGAACTCGGAGGTGCC 59.858 63.158 10.23 0.00 0.00 5.01
259 260 2.551644 GGAGGTGCCGTAGTTTTGG 58.448 57.895 0.00 0.00 0.00 3.28
260 261 0.250597 GGAGGTGCCGTAGTTTTGGT 60.251 55.000 0.00 0.00 0.00 3.67
261 262 0.872388 GAGGTGCCGTAGTTTTGGTG 59.128 55.000 0.00 0.00 0.00 4.17
262 263 1.170290 AGGTGCCGTAGTTTTGGTGC 61.170 55.000 0.00 0.00 0.00 5.01
263 264 1.170290 GGTGCCGTAGTTTTGGTGCT 61.170 55.000 0.00 0.00 0.00 4.40
264 265 0.666374 GTGCCGTAGTTTTGGTGCTT 59.334 50.000 0.00 0.00 0.00 3.91
265 266 0.665835 TGCCGTAGTTTTGGTGCTTG 59.334 50.000 0.00 0.00 0.00 4.01
266 267 0.948678 GCCGTAGTTTTGGTGCTTGA 59.051 50.000 0.00 0.00 0.00 3.02
267 268 1.539827 GCCGTAGTTTTGGTGCTTGAT 59.460 47.619 0.00 0.00 0.00 2.57
268 269 2.414161 GCCGTAGTTTTGGTGCTTGATC 60.414 50.000 0.00 0.00 0.00 2.92
269 270 2.159707 CCGTAGTTTTGGTGCTTGATCG 60.160 50.000 0.00 0.00 0.00 3.69
270 271 2.159707 CGTAGTTTTGGTGCTTGATCGG 60.160 50.000 0.00 0.00 0.00 4.18
271 272 1.981256 AGTTTTGGTGCTTGATCGGT 58.019 45.000 0.00 0.00 0.00 4.69
272 273 1.880027 AGTTTTGGTGCTTGATCGGTC 59.120 47.619 0.00 0.00 0.00 4.79
273 274 0.871722 TTTTGGTGCTTGATCGGTCG 59.128 50.000 0.00 0.00 0.00 4.79
274 275 0.953471 TTTGGTGCTTGATCGGTCGG 60.953 55.000 0.00 0.00 0.00 4.79
275 276 2.511600 GGTGCTTGATCGGTCGGG 60.512 66.667 0.00 0.00 0.00 5.14
276 277 3.195698 GTGCTTGATCGGTCGGGC 61.196 66.667 5.85 5.85 0.00 6.13
277 278 4.467084 TGCTTGATCGGTCGGGCC 62.467 66.667 9.60 0.00 0.00 5.80
287 288 4.353437 GTCGGGCCGTGAAGACGT 62.353 66.667 27.32 0.00 44.54 4.34
288 289 2.672651 TCGGGCCGTGAAGACGTA 60.673 61.111 27.32 0.00 44.54 3.57
289 290 2.505557 CGGGCCGTGAAGACGTAC 60.506 66.667 19.97 0.00 44.54 3.67
290 291 2.505557 GGGCCGTGAAGACGTACG 60.506 66.667 15.01 15.01 44.54 3.67
291 292 2.562912 GGCCGTGAAGACGTACGA 59.437 61.111 24.41 0.00 44.54 3.43
292 293 1.799121 GGCCGTGAAGACGTACGAC 60.799 63.158 24.41 16.77 44.54 4.34
293 294 1.208614 GCCGTGAAGACGTACGACT 59.791 57.895 24.41 19.11 44.54 4.18
294 295 0.443869 GCCGTGAAGACGTACGACTA 59.556 55.000 24.41 3.99 44.54 2.59
295 296 1.788344 GCCGTGAAGACGTACGACTAC 60.788 57.143 24.41 15.53 44.54 2.73
296 297 1.460743 CCGTGAAGACGTACGACTACA 59.539 52.381 24.41 13.28 44.54 2.74
297 298 2.094894 CCGTGAAGACGTACGACTACAT 59.905 50.000 24.41 6.17 44.54 2.29
298 299 3.340552 CGTGAAGACGTACGACTACATC 58.659 50.000 24.41 15.62 42.54 3.06
299 300 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
300 301 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
301 302 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
302 303 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
303 304 3.341823 AGACGTACGACTACATCAACCT 58.658 45.455 24.41 0.00 0.00 3.50
304 305 4.507710 AGACGTACGACTACATCAACCTA 58.492 43.478 24.41 0.00 0.00 3.08
305 306 4.937620 AGACGTACGACTACATCAACCTAA 59.062 41.667 24.41 0.00 0.00 2.69
306 307 4.974591 ACGTACGACTACATCAACCTAAC 58.025 43.478 24.41 0.00 0.00 2.34
307 308 4.024438 CGTACGACTACATCAACCTAACG 58.976 47.826 10.44 0.00 0.00 3.18
308 309 2.872370 ACGACTACATCAACCTAACGC 58.128 47.619 0.00 0.00 0.00 4.84
309 310 2.490903 ACGACTACATCAACCTAACGCT 59.509 45.455 0.00 0.00 0.00 5.07
310 311 3.057033 ACGACTACATCAACCTAACGCTT 60.057 43.478 0.00 0.00 0.00 4.68
311 312 3.546670 CGACTACATCAACCTAACGCTTC 59.453 47.826 0.00 0.00 0.00 3.86
312 313 3.858247 ACTACATCAACCTAACGCTTCC 58.142 45.455 0.00 0.00 0.00 3.46
313 314 1.722011 ACATCAACCTAACGCTTCCG 58.278 50.000 0.00 0.00 41.14 4.30
323 324 4.478195 CGCTTCCGTTGTCGATCT 57.522 55.556 0.00 0.00 39.71 2.75
324 325 3.616935 CGCTTCCGTTGTCGATCTA 57.383 52.632 0.00 0.00 39.71 1.98
325 326 1.189403 CGCTTCCGTTGTCGATCTAC 58.811 55.000 0.00 0.00 39.71 2.59
326 327 1.466866 CGCTTCCGTTGTCGATCTACA 60.467 52.381 0.00 0.00 39.71 2.74
327 328 2.602878 GCTTCCGTTGTCGATCTACAA 58.397 47.619 8.63 8.63 39.71 2.41
328 329 2.599082 GCTTCCGTTGTCGATCTACAAG 59.401 50.000 12.70 7.56 39.92 3.16
329 330 2.933495 TCCGTTGTCGATCTACAAGG 57.067 50.000 20.13 20.13 39.92 3.61
331 332 2.649331 CGTTGTCGATCTACAAGGGT 57.351 50.000 19.59 0.00 39.92 4.34
332 333 3.770263 CGTTGTCGATCTACAAGGGTA 57.230 47.619 19.59 0.00 39.92 3.69
333 334 3.432782 CGTTGTCGATCTACAAGGGTAC 58.567 50.000 19.59 6.90 39.92 3.34
334 335 3.432782 GTTGTCGATCTACAAGGGTACG 58.567 50.000 12.70 0.00 39.92 3.67
335 336 2.715046 TGTCGATCTACAAGGGTACGT 58.285 47.619 0.00 0.00 0.00 3.57
336 337 3.872696 TGTCGATCTACAAGGGTACGTA 58.127 45.455 0.00 0.00 0.00 3.57
337 338 3.873361 TGTCGATCTACAAGGGTACGTAG 59.127 47.826 0.00 0.00 37.12 3.51
338 339 4.122776 GTCGATCTACAAGGGTACGTAGA 58.877 47.826 9.79 9.79 45.99 2.59
343 344 4.847198 TCTACAAGGGTACGTAGATCACA 58.153 43.478 0.00 0.00 39.28 3.58
344 345 3.863142 ACAAGGGTACGTAGATCACAC 57.137 47.619 0.00 0.00 0.00 3.82
345 346 3.428532 ACAAGGGTACGTAGATCACACT 58.571 45.455 0.00 0.00 0.00 3.55
346 347 3.442977 ACAAGGGTACGTAGATCACACTC 59.557 47.826 0.00 0.00 0.00 3.51
347 348 2.652590 AGGGTACGTAGATCACACTCC 58.347 52.381 0.00 0.00 0.00 3.85
348 349 1.680207 GGGTACGTAGATCACACTCCC 59.320 57.143 0.00 0.00 0.00 4.30
349 350 1.680207 GGTACGTAGATCACACTCCCC 59.320 57.143 0.00 0.00 0.00 4.81
350 351 1.680207 GTACGTAGATCACACTCCCCC 59.320 57.143 0.00 0.00 0.00 5.40
365 366 1.227674 CCCCCTCTCGTTGCTATGC 60.228 63.158 0.00 0.00 0.00 3.14
366 367 1.522092 CCCCTCTCGTTGCTATGCA 59.478 57.895 0.00 0.00 36.47 3.96
367 368 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
368 369 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
369 370 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
370 371 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
371 372 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
372 373 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
373 374 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
374 375 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
375 376 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
376 377 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
377 378 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
378 379 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
379 380 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
380 381 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
381 382 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
382 383 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
383 384 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
384 385 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
385 386 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
386 387 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
387 388 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
399 400 2.325509 GCGTGTGCGTAGGAATTTTT 57.674 45.000 0.00 0.00 40.81 1.94
420 421 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
421 422 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
422 423 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
423 424 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
424 425 4.998672 TGAAATTACTACGTTCCCCAACAG 59.001 41.667 0.00 0.00 32.14 3.16
425 426 4.895668 AATTACTACGTTCCCCAACAGA 57.104 40.909 0.00 0.00 32.14 3.41
426 427 4.895668 ATTACTACGTTCCCCAACAGAA 57.104 40.909 0.00 0.00 32.14 3.02
427 428 4.895668 TTACTACGTTCCCCAACAGAAT 57.104 40.909 0.00 0.00 32.14 2.40
428 429 5.999205 TTACTACGTTCCCCAACAGAATA 57.001 39.130 0.00 0.00 32.14 1.75
429 430 6.549433 TTACTACGTTCCCCAACAGAATAT 57.451 37.500 0.00 0.00 32.14 1.28
430 431 5.431179 ACTACGTTCCCCAACAGAATATT 57.569 39.130 0.00 0.00 32.14 1.28
431 432 5.183228 ACTACGTTCCCCAACAGAATATTG 58.817 41.667 0.00 0.00 32.14 1.90
432 433 3.352648 ACGTTCCCCAACAGAATATTGG 58.647 45.455 0.00 0.00 45.36 3.16
433 434 3.245122 ACGTTCCCCAACAGAATATTGGT 60.245 43.478 0.00 0.00 44.46 3.67
434 435 4.019141 ACGTTCCCCAACAGAATATTGGTA 60.019 41.667 0.00 0.00 44.46 3.25
435 436 4.334481 CGTTCCCCAACAGAATATTGGTAC 59.666 45.833 0.00 0.00 44.46 3.34
436 437 4.513406 TCCCCAACAGAATATTGGTACC 57.487 45.455 4.43 4.43 44.46 3.34
437 438 3.853181 TCCCCAACAGAATATTGGTACCA 59.147 43.478 11.60 11.60 44.46 3.25
438 439 4.480537 TCCCCAACAGAATATTGGTACCAT 59.519 41.667 17.17 8.68 44.46 3.55
439 440 5.672653 TCCCCAACAGAATATTGGTACCATA 59.327 40.000 17.17 10.66 44.46 2.74
440 441 6.003950 CCCCAACAGAATATTGGTACCATAG 58.996 44.000 17.17 3.51 44.46 2.23
441 442 5.473504 CCCAACAGAATATTGGTACCATAGC 59.526 44.000 17.17 4.11 44.46 2.97
442 443 6.061441 CCAACAGAATATTGGTACCATAGCA 58.939 40.000 17.17 0.00 41.55 3.49
443 444 6.017109 CCAACAGAATATTGGTACCATAGCAC 60.017 42.308 17.17 8.01 41.55 4.40
444 445 6.500589 ACAGAATATTGGTACCATAGCACT 57.499 37.500 17.17 10.19 35.67 4.40
445 446 6.525629 ACAGAATATTGGTACCATAGCACTC 58.474 40.000 17.17 8.12 35.67 3.51
446 447 5.934625 CAGAATATTGGTACCATAGCACTCC 59.065 44.000 17.17 0.96 35.67 3.85
447 448 4.910458 ATATTGGTACCATAGCACTCCC 57.090 45.455 17.17 0.00 35.67 4.30
448 449 2.263895 TTGGTACCATAGCACTCCCT 57.736 50.000 17.17 0.00 35.67 4.20
449 450 1.789523 TGGTACCATAGCACTCCCTC 58.210 55.000 11.60 0.00 0.00 4.30
450 451 1.291033 TGGTACCATAGCACTCCCTCT 59.709 52.381 11.60 0.00 0.00 3.69
451 452 1.689273 GGTACCATAGCACTCCCTCTG 59.311 57.143 7.15 0.00 0.00 3.35
452 453 2.389715 GTACCATAGCACTCCCTCTGT 58.610 52.381 0.00 0.00 0.00 3.41
453 454 2.848678 ACCATAGCACTCCCTCTGTA 57.151 50.000 0.00 0.00 0.00 2.74
454 455 3.116096 ACCATAGCACTCCCTCTGTAA 57.884 47.619 0.00 0.00 0.00 2.41
455 456 3.450904 ACCATAGCACTCCCTCTGTAAA 58.549 45.455 0.00 0.00 0.00 2.01
456 457 4.040755 ACCATAGCACTCCCTCTGTAAAT 58.959 43.478 0.00 0.00 0.00 1.40
457 458 4.475016 ACCATAGCACTCCCTCTGTAAATT 59.525 41.667 0.00 0.00 0.00 1.82
458 459 5.665812 ACCATAGCACTCCCTCTGTAAATTA 59.334 40.000 0.00 0.00 0.00 1.40
459 460 6.157994 ACCATAGCACTCCCTCTGTAAATTAA 59.842 38.462 0.00 0.00 0.00 1.40
460 461 7.147302 ACCATAGCACTCCCTCTGTAAATTAAT 60.147 37.037 0.00 0.00 0.00 1.40
461 462 7.721399 CCATAGCACTCCCTCTGTAAATTAATT 59.279 37.037 0.00 0.00 0.00 1.40
462 463 9.125026 CATAGCACTCCCTCTGTAAATTAATTT 57.875 33.333 17.18 17.18 0.00 1.82
465 466 9.178758 AGCACTCCCTCTGTAAATTAATTTAAG 57.821 33.333 19.67 17.58 34.36 1.85
466 467 9.174166 GCACTCCCTCTGTAAATTAATTTAAGA 57.826 33.333 19.67 19.86 34.36 2.10
534 535 9.454859 AGAAAAGGGAGTACTGATAATCTTTTG 57.545 33.333 0.00 0.00 34.60 2.44
535 536 9.449719 GAAAAGGGAGTACTGATAATCTTTTGA 57.550 33.333 0.00 0.00 34.60 2.69
536 537 9.981460 AAAAGGGAGTACTGATAATCTTTTGAT 57.019 29.630 0.00 0.00 41.73 2.57
807 810 4.077184 CGTTAGTGGCCCGGCTCA 62.077 66.667 9.86 2.73 0.00 4.26
841 845 0.323957 GGGGCTAGGTCAAAACGACT 59.676 55.000 0.00 0.00 44.70 4.18
889 905 1.707989 TCACTCACTCACTCCTCTCCT 59.292 52.381 0.00 0.00 0.00 3.69
909 925 3.016736 CTCGAGCTCTCTCTTCTTCCTT 58.983 50.000 12.85 0.00 37.19 3.36
921 937 3.389983 TCTTCTTCCTTTGTTTCCTCCGA 59.610 43.478 0.00 0.00 0.00 4.55
979 995 2.439409 CCAACAGCAATGAGACATCCA 58.561 47.619 0.00 0.00 0.00 3.41
1111 1127 5.265191 AGCTCACTCTACTCTTCCATGTAA 58.735 41.667 0.00 0.00 0.00 2.41
1330 1347 6.098017 ACTACGGTAAGAGCAACTAATTGTC 58.902 40.000 0.00 0.00 38.17 3.18
2108 2125 0.534412 TCTGAGCTACTGAAGGCTGC 59.466 55.000 0.00 0.00 39.05 5.25
2141 2158 5.163774 GCAAGGAAAAGCTAGACAAGATCAG 60.164 44.000 0.00 0.00 0.00 2.90
2421 2464 5.896073 ACCTTATTATCTAAGCCTGCTGT 57.104 39.130 0.00 0.00 0.00 4.40
2704 2764 9.188588 CTTATACAGTTCAACTACTGACGAAAA 57.811 33.333 10.46 0.00 46.72 2.29
2756 2854 4.589374 ACTTAGTTGTCAGTCCTGCTAAGT 59.411 41.667 14.25 14.25 41.83 2.24
2761 2859 1.618837 GTCAGTCCTGCTAAGTGTCCA 59.381 52.381 0.00 0.00 0.00 4.02
2975 3094 2.365635 ACCGCTACCTCTGCCCAT 60.366 61.111 0.00 0.00 0.00 4.00
3047 3166 1.854280 TGACCACCTTACCTGGGTTTT 59.146 47.619 0.00 0.00 34.44 2.43
3120 3239 0.108207 GCCTCTGCTGCATCTACCAT 59.892 55.000 1.31 0.00 33.53 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.480133 GTGCCCCTGCCTCCGTAT 61.480 66.667 0.00 0.00 36.33 3.06
12 13 2.040606 TGTCTCTAGGGGGTGCCC 59.959 66.667 0.00 0.00 44.51 5.36
13 14 1.198759 TTGTGTCTCTAGGGGGTGCC 61.199 60.000 0.00 0.00 0.00 5.01
14 15 0.250513 CTTGTGTCTCTAGGGGGTGC 59.749 60.000 0.00 0.00 0.00 5.01
15 16 1.645710 ACTTGTGTCTCTAGGGGGTG 58.354 55.000 0.00 0.00 0.00 4.61
16 17 1.978580 CAACTTGTGTCTCTAGGGGGT 59.021 52.381 0.00 0.00 0.00 4.95
17 18 2.257207 TCAACTTGTGTCTCTAGGGGG 58.743 52.381 0.00 0.00 0.00 5.40
18 19 3.118592 GGATCAACTTGTGTCTCTAGGGG 60.119 52.174 0.00 0.00 0.00 4.79
19 20 3.515502 TGGATCAACTTGTGTCTCTAGGG 59.484 47.826 0.00 0.00 0.00 3.53
20 21 4.499183 GTGGATCAACTTGTGTCTCTAGG 58.501 47.826 0.00 0.00 0.00 3.02
21 22 4.169508 CGTGGATCAACTTGTGTCTCTAG 58.830 47.826 0.00 0.00 0.00 2.43
22 23 3.572682 ACGTGGATCAACTTGTGTCTCTA 59.427 43.478 0.00 0.00 0.00 2.43
23 24 2.365617 ACGTGGATCAACTTGTGTCTCT 59.634 45.455 0.00 0.00 0.00 3.10
24 25 2.476619 CACGTGGATCAACTTGTGTCTC 59.523 50.000 7.95 0.00 0.00 3.36
25 26 2.102420 TCACGTGGATCAACTTGTGTCT 59.898 45.455 17.00 0.00 0.00 3.41
26 27 2.479837 TCACGTGGATCAACTTGTGTC 58.520 47.619 17.00 0.00 0.00 3.67
27 28 2.613026 TCACGTGGATCAACTTGTGT 57.387 45.000 17.00 0.00 0.00 3.72
37 38 6.162079 CAGCTAAGAATATGATCACGTGGAT 58.838 40.000 17.00 7.95 39.53 3.41
38 39 5.069119 ACAGCTAAGAATATGATCACGTGGA 59.931 40.000 17.00 2.69 0.00 4.02
39 40 5.176406 CACAGCTAAGAATATGATCACGTGG 59.824 44.000 17.00 0.00 0.00 4.94
40 41 5.750547 ACACAGCTAAGAATATGATCACGTG 59.249 40.000 9.94 9.94 0.00 4.49
41 42 5.750547 CACACAGCTAAGAATATGATCACGT 59.249 40.000 0.00 0.00 0.00 4.49
42 43 5.750547 ACACACAGCTAAGAATATGATCACG 59.249 40.000 0.00 0.00 0.00 4.35
43 44 6.018425 CCACACACAGCTAAGAATATGATCAC 60.018 42.308 0.00 0.00 0.00 3.06
44 45 6.051074 CCACACACAGCTAAGAATATGATCA 58.949 40.000 0.00 0.00 0.00 2.92
45 46 6.018425 CACCACACACAGCTAAGAATATGATC 60.018 42.308 0.00 0.00 0.00 2.92
46 47 5.819379 CACCACACACAGCTAAGAATATGAT 59.181 40.000 0.00 0.00 0.00 2.45
47 48 5.178061 CACCACACACAGCTAAGAATATGA 58.822 41.667 0.00 0.00 0.00 2.15
48 49 4.201851 GCACCACACACAGCTAAGAATATG 60.202 45.833 0.00 0.00 0.00 1.78
49 50 3.941483 GCACCACACACAGCTAAGAATAT 59.059 43.478 0.00 0.00 0.00 1.28
50 51 3.334691 GCACCACACACAGCTAAGAATA 58.665 45.455 0.00 0.00 0.00 1.75
51 52 2.154462 GCACCACACACAGCTAAGAAT 58.846 47.619 0.00 0.00 0.00 2.40
52 53 1.593196 GCACCACACACAGCTAAGAA 58.407 50.000 0.00 0.00 0.00 2.52
53 54 0.250295 GGCACCACACACAGCTAAGA 60.250 55.000 0.00 0.00 0.00 2.10
54 55 2.247790 GGCACCACACACAGCTAAG 58.752 57.895 0.00 0.00 0.00 2.18
55 56 4.473643 GGCACCACACACAGCTAA 57.526 55.556 0.00 0.00 0.00 3.09
68 69 1.227383 CTATGGTGGAAGGGGGCAC 59.773 63.158 0.00 0.00 0.00 5.01
69 70 1.230149 ACTATGGTGGAAGGGGGCA 60.230 57.895 0.00 0.00 0.00 5.36
70 71 1.532238 GACTATGGTGGAAGGGGGC 59.468 63.158 0.00 0.00 0.00 5.80
71 72 0.327576 AGGACTATGGTGGAAGGGGG 60.328 60.000 0.00 0.00 0.00 5.40
72 73 1.132500 GAGGACTATGGTGGAAGGGG 58.868 60.000 0.00 0.00 0.00 4.79
73 74 0.753262 CGAGGACTATGGTGGAAGGG 59.247 60.000 0.00 0.00 0.00 3.95
74 75 1.776662 TCGAGGACTATGGTGGAAGG 58.223 55.000 0.00 0.00 0.00 3.46
75 76 5.730296 ATTATCGAGGACTATGGTGGAAG 57.270 43.478 0.00 0.00 0.00 3.46
76 77 7.406031 GATATTATCGAGGACTATGGTGGAA 57.594 40.000 0.00 0.00 0.00 3.53
90 91 7.678927 GCCTAAGCACTGATACGATATTATCGA 60.679 40.741 27.89 14.45 46.98 3.59
92 93 6.415280 CGCCTAAGCACTGATACGATATTATC 59.585 42.308 0.00 0.00 39.83 1.75
93 94 6.095021 TCGCCTAAGCACTGATACGATATTAT 59.905 38.462 0.00 0.00 39.83 1.28
94 95 5.413523 TCGCCTAAGCACTGATACGATATTA 59.586 40.000 0.00 0.00 39.83 0.98
95 96 4.217767 TCGCCTAAGCACTGATACGATATT 59.782 41.667 0.00 0.00 39.83 1.28
96 97 3.756963 TCGCCTAAGCACTGATACGATAT 59.243 43.478 0.00 0.00 39.83 1.63
97 98 3.143728 TCGCCTAAGCACTGATACGATA 58.856 45.455 0.00 0.00 39.83 2.92
98 99 1.954382 TCGCCTAAGCACTGATACGAT 59.046 47.619 0.00 0.00 39.83 3.73
99 100 1.385528 TCGCCTAAGCACTGATACGA 58.614 50.000 0.00 0.00 39.83 3.43
100 101 2.120232 CTTCGCCTAAGCACTGATACG 58.880 52.381 0.00 0.00 39.83 3.06
115 116 1.766143 CTAATGTCGCAGGGCTTCGC 61.766 60.000 0.00 0.00 0.00 4.70
116 117 0.460284 ACTAATGTCGCAGGGCTTCG 60.460 55.000 0.00 0.00 0.00 3.79
117 118 2.202566 GTACTAATGTCGCAGGGCTTC 58.797 52.381 0.00 0.00 0.00 3.86
118 119 1.470979 CGTACTAATGTCGCAGGGCTT 60.471 52.381 0.00 0.00 0.00 4.35
119 120 0.102481 CGTACTAATGTCGCAGGGCT 59.898 55.000 0.00 0.00 0.00 5.19
120 121 0.179119 ACGTACTAATGTCGCAGGGC 60.179 55.000 0.00 0.00 0.00 5.19
121 122 1.133598 TGACGTACTAATGTCGCAGGG 59.866 52.381 0.00 0.00 43.45 4.45
122 123 2.554806 TGACGTACTAATGTCGCAGG 57.445 50.000 0.00 0.00 43.45 4.85
123 124 3.754955 TCTTGACGTACTAATGTCGCAG 58.245 45.455 0.00 0.00 43.45 5.18
124 125 3.835378 TCTTGACGTACTAATGTCGCA 57.165 42.857 0.00 0.00 43.45 5.10
125 126 3.417969 CGATCTTGACGTACTAATGTCGC 59.582 47.826 0.00 0.00 43.45 5.19
126 127 4.585364 ACGATCTTGACGTACTAATGTCG 58.415 43.478 0.00 0.80 43.45 4.35
127 128 5.451662 GTGACGATCTTGACGTACTAATGTC 59.548 44.000 0.00 0.00 43.97 3.06
128 129 5.330295 GTGACGATCTTGACGTACTAATGT 58.670 41.667 0.00 0.00 43.97 2.71
129 130 4.733887 GGTGACGATCTTGACGTACTAATG 59.266 45.833 0.00 0.00 43.97 1.90
130 131 4.397103 TGGTGACGATCTTGACGTACTAAT 59.603 41.667 0.00 0.00 43.97 1.73
131 132 3.752747 TGGTGACGATCTTGACGTACTAA 59.247 43.478 0.00 0.00 43.97 2.24
132 133 3.125829 GTGGTGACGATCTTGACGTACTA 59.874 47.826 0.00 0.00 43.97 1.82
133 134 2.095364 GTGGTGACGATCTTGACGTACT 60.095 50.000 0.00 0.00 43.97 2.73
134 135 2.248487 GTGGTGACGATCTTGACGTAC 58.752 52.381 0.00 0.00 43.97 3.67
135 136 2.624316 GTGGTGACGATCTTGACGTA 57.376 50.000 0.00 0.00 43.97 3.57
136 137 3.491581 GTGGTGACGATCTTGACGT 57.508 52.632 0.00 0.00 46.58 4.34
160 161 1.009389 GGAAGAGTTCCGTCAGCACG 61.009 60.000 0.00 0.00 46.29 5.34
161 162 2.828933 GGAAGAGTTCCGTCAGCAC 58.171 57.895 0.00 0.00 40.59 4.40
170 171 2.143925 CAAAGTGTCGGGGAAGAGTTC 58.856 52.381 0.00 0.00 0.00 3.01
171 172 1.814248 GCAAAGTGTCGGGGAAGAGTT 60.814 52.381 0.00 0.00 0.00 3.01
172 173 0.250338 GCAAAGTGTCGGGGAAGAGT 60.250 55.000 0.00 0.00 0.00 3.24
173 174 0.035458 AGCAAAGTGTCGGGGAAGAG 59.965 55.000 0.00 0.00 0.00 2.85
174 175 0.250295 CAGCAAAGTGTCGGGGAAGA 60.250 55.000 0.00 0.00 0.00 2.87
175 176 1.237285 CCAGCAAAGTGTCGGGGAAG 61.237 60.000 0.00 0.00 0.00 3.46
176 177 1.228124 CCAGCAAAGTGTCGGGGAA 60.228 57.895 0.00 0.00 0.00 3.97
177 178 1.488705 ATCCAGCAAAGTGTCGGGGA 61.489 55.000 0.00 0.00 0.00 4.81
178 179 1.002134 ATCCAGCAAAGTGTCGGGG 60.002 57.895 0.00 0.00 0.00 5.73
179 180 1.361668 CGATCCAGCAAAGTGTCGGG 61.362 60.000 0.00 0.00 0.00 5.14
180 181 1.361668 CCGATCCAGCAAAGTGTCGG 61.362 60.000 0.00 0.00 41.98 4.79
181 182 0.389817 TCCGATCCAGCAAAGTGTCG 60.390 55.000 0.00 0.00 0.00 4.35
182 183 1.338200 ACTCCGATCCAGCAAAGTGTC 60.338 52.381 0.00 0.00 0.00 3.67
183 184 0.687354 ACTCCGATCCAGCAAAGTGT 59.313 50.000 0.00 0.00 0.00 3.55
184 185 1.734465 GAACTCCGATCCAGCAAAGTG 59.266 52.381 0.00 0.00 0.00 3.16
185 186 1.673033 CGAACTCCGATCCAGCAAAGT 60.673 52.381 0.00 0.00 41.76 2.66
186 187 1.002366 CGAACTCCGATCCAGCAAAG 58.998 55.000 0.00 0.00 41.76 2.77
187 188 0.391130 CCGAACTCCGATCCAGCAAA 60.391 55.000 0.00 0.00 41.76 3.68
188 189 1.218047 CCGAACTCCGATCCAGCAA 59.782 57.895 0.00 0.00 41.76 3.91
189 190 2.721167 CCCGAACTCCGATCCAGCA 61.721 63.158 0.00 0.00 41.76 4.41
190 191 2.107141 CCCGAACTCCGATCCAGC 59.893 66.667 0.00 0.00 41.76 4.85
191 192 1.115930 ATCCCCGAACTCCGATCCAG 61.116 60.000 0.00 0.00 41.76 3.86
192 193 1.075525 ATCCCCGAACTCCGATCCA 60.076 57.895 0.00 0.00 41.76 3.41
193 194 1.666580 GATCCCCGAACTCCGATCC 59.333 63.158 0.00 0.00 41.76 3.36
194 195 1.286260 CGATCCCCGAACTCCGATC 59.714 63.158 0.00 0.00 41.76 3.69
195 196 1.453762 GACGATCCCCGAACTCCGAT 61.454 60.000 0.00 0.00 41.76 4.18
196 197 2.044650 ACGATCCCCGAACTCCGA 60.045 61.111 0.00 0.00 41.76 4.55
197 198 1.735376 ATGACGATCCCCGAACTCCG 61.735 60.000 0.00 0.00 41.76 4.63
198 199 0.032267 GATGACGATCCCCGAACTCC 59.968 60.000 0.00 0.00 41.76 3.85
199 200 0.317938 CGATGACGATCCCCGAACTC 60.318 60.000 0.00 0.00 42.66 3.01
200 201 0.750546 TCGATGACGATCCCCGAACT 60.751 55.000 0.00 0.00 43.81 3.01
201 202 1.731700 TCGATGACGATCCCCGAAC 59.268 57.895 0.00 0.00 43.81 3.95
202 203 4.246053 TCGATGACGATCCCCGAA 57.754 55.556 0.00 0.00 43.81 4.30
210 211 0.454452 CACGTTCAGCTCGATGACGA 60.454 55.000 13.59 0.00 46.56 4.20
211 212 0.729478 ACACGTTCAGCTCGATGACG 60.729 55.000 0.00 4.93 41.26 4.35
212 213 0.710567 CACACGTTCAGCTCGATGAC 59.289 55.000 0.00 0.00 0.00 3.06
213 214 1.008875 GCACACGTTCAGCTCGATGA 61.009 55.000 0.00 0.00 0.00 2.92
214 215 1.010935 AGCACACGTTCAGCTCGATG 61.011 55.000 0.00 0.07 32.05 3.84
215 216 0.526211 TAGCACACGTTCAGCTCGAT 59.474 50.000 9.17 0.00 39.68 3.59
216 217 0.109735 CTAGCACACGTTCAGCTCGA 60.110 55.000 9.17 0.00 39.68 4.04
217 218 0.109735 TCTAGCACACGTTCAGCTCG 60.110 55.000 9.17 4.49 39.68 5.03
218 219 1.721926 GTTCTAGCACACGTTCAGCTC 59.278 52.381 9.17 0.00 39.68 4.09
219 220 1.341531 AGTTCTAGCACACGTTCAGCT 59.658 47.619 10.52 10.52 42.14 4.24
220 221 1.721926 GAGTTCTAGCACACGTTCAGC 59.278 52.381 0.00 0.00 0.00 4.26
221 222 1.979469 CGAGTTCTAGCACACGTTCAG 59.021 52.381 4.36 0.00 0.00 3.02
222 223 1.335597 CCGAGTTCTAGCACACGTTCA 60.336 52.381 10.84 0.00 0.00 3.18
223 224 1.068748 TCCGAGTTCTAGCACACGTTC 60.069 52.381 10.84 0.00 0.00 3.95
224 225 0.956633 TCCGAGTTCTAGCACACGTT 59.043 50.000 10.84 0.00 0.00 3.99
225 226 0.522180 CTCCGAGTTCTAGCACACGT 59.478 55.000 10.84 0.00 0.00 4.49
226 227 0.179161 CCTCCGAGTTCTAGCACACG 60.179 60.000 5.46 5.46 0.00 4.49
227 228 0.889306 ACCTCCGAGTTCTAGCACAC 59.111 55.000 0.00 0.00 0.00 3.82
228 229 0.888619 CACCTCCGAGTTCTAGCACA 59.111 55.000 0.00 0.00 0.00 4.57
229 230 0.458716 GCACCTCCGAGTTCTAGCAC 60.459 60.000 0.00 0.00 0.00 4.40
230 231 1.605058 GGCACCTCCGAGTTCTAGCA 61.605 60.000 0.00 0.00 0.00 3.49
231 232 1.142097 GGCACCTCCGAGTTCTAGC 59.858 63.158 0.00 0.00 0.00 3.42
241 242 0.250597 ACCAAAACTACGGCACCTCC 60.251 55.000 0.00 0.00 0.00 4.30
242 243 0.872388 CACCAAAACTACGGCACCTC 59.128 55.000 0.00 0.00 0.00 3.85
243 244 1.170290 GCACCAAAACTACGGCACCT 61.170 55.000 0.00 0.00 0.00 4.00
244 245 1.170290 AGCACCAAAACTACGGCACC 61.170 55.000 0.00 0.00 0.00 5.01
245 246 0.666374 AAGCACCAAAACTACGGCAC 59.334 50.000 0.00 0.00 0.00 5.01
246 247 0.665835 CAAGCACCAAAACTACGGCA 59.334 50.000 0.00 0.00 0.00 5.69
247 248 0.948678 TCAAGCACCAAAACTACGGC 59.051 50.000 0.00 0.00 0.00 5.68
248 249 2.159707 CGATCAAGCACCAAAACTACGG 60.160 50.000 0.00 0.00 0.00 4.02
249 250 2.159707 CCGATCAAGCACCAAAACTACG 60.160 50.000 0.00 0.00 0.00 3.51
250 251 2.812011 ACCGATCAAGCACCAAAACTAC 59.188 45.455 0.00 0.00 0.00 2.73
251 252 3.071479 GACCGATCAAGCACCAAAACTA 58.929 45.455 0.00 0.00 0.00 2.24
252 253 1.880027 GACCGATCAAGCACCAAAACT 59.120 47.619 0.00 0.00 0.00 2.66
253 254 1.399727 CGACCGATCAAGCACCAAAAC 60.400 52.381 0.00 0.00 0.00 2.43
254 255 0.871722 CGACCGATCAAGCACCAAAA 59.128 50.000 0.00 0.00 0.00 2.44
255 256 0.953471 CCGACCGATCAAGCACCAAA 60.953 55.000 0.00 0.00 0.00 3.28
256 257 1.375396 CCGACCGATCAAGCACCAA 60.375 57.895 0.00 0.00 0.00 3.67
257 258 2.264480 CCGACCGATCAAGCACCA 59.736 61.111 0.00 0.00 0.00 4.17
258 259 2.511600 CCCGACCGATCAAGCACC 60.512 66.667 0.00 0.00 0.00 5.01
259 260 3.195698 GCCCGACCGATCAAGCAC 61.196 66.667 0.00 0.00 0.00 4.40
260 261 4.467084 GGCCCGACCGATCAAGCA 62.467 66.667 0.00 0.00 0.00 3.91
278 279 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
279 280 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
280 281 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
281 282 3.755378 AGGTTGATGTAGTCGTACGTCTT 59.245 43.478 19.61 2.66 43.23 3.01
282 283 3.341823 AGGTTGATGTAGTCGTACGTCT 58.658 45.455 18.54 18.54 43.23 4.18
283 284 3.754188 AGGTTGATGTAGTCGTACGTC 57.246 47.619 16.05 10.06 43.16 4.34
284 285 4.436050 CGTTAGGTTGATGTAGTCGTACGT 60.436 45.833 16.05 0.00 30.95 3.57
285 286 4.024438 CGTTAGGTTGATGTAGTCGTACG 58.976 47.826 9.53 9.53 30.95 3.67
286 287 3.788163 GCGTTAGGTTGATGTAGTCGTAC 59.212 47.826 0.00 0.00 0.00 3.67
287 288 3.691118 AGCGTTAGGTTGATGTAGTCGTA 59.309 43.478 0.00 0.00 0.00 3.43
288 289 2.490903 AGCGTTAGGTTGATGTAGTCGT 59.509 45.455 0.00 0.00 0.00 4.34
289 290 3.146618 AGCGTTAGGTTGATGTAGTCG 57.853 47.619 0.00 0.00 0.00 4.18
290 291 3.864003 GGAAGCGTTAGGTTGATGTAGTC 59.136 47.826 0.00 0.00 38.32 2.59
291 292 3.675228 CGGAAGCGTTAGGTTGATGTAGT 60.675 47.826 0.00 0.00 38.32 2.73
292 293 2.858344 CGGAAGCGTTAGGTTGATGTAG 59.142 50.000 0.00 0.00 38.32 2.74
293 294 2.231964 ACGGAAGCGTTAGGTTGATGTA 59.768 45.455 0.00 0.00 38.32 2.29
294 295 1.001633 ACGGAAGCGTTAGGTTGATGT 59.998 47.619 0.00 0.00 38.32 3.06
295 296 1.722011 ACGGAAGCGTTAGGTTGATG 58.278 50.000 0.00 0.00 38.32 3.07
296 297 2.073816 CAACGGAAGCGTTAGGTTGAT 58.926 47.619 0.00 0.00 40.16 2.57
297 298 1.202557 ACAACGGAAGCGTTAGGTTGA 60.203 47.619 13.93 0.00 40.16 3.18
298 299 1.193874 GACAACGGAAGCGTTAGGTTG 59.806 52.381 0.00 7.94 42.63 3.77
299 300 1.505425 GACAACGGAAGCGTTAGGTT 58.495 50.000 0.00 0.00 41.30 3.50
300 301 0.665369 CGACAACGGAAGCGTTAGGT 60.665 55.000 0.00 0.00 35.72 3.08
301 302 0.387622 TCGACAACGGAAGCGTTAGG 60.388 55.000 0.00 0.00 40.21 2.69
302 303 1.582502 GATCGACAACGGAAGCGTTAG 59.417 52.381 0.00 0.00 40.21 2.34
303 304 1.200716 AGATCGACAACGGAAGCGTTA 59.799 47.619 0.00 0.00 40.21 3.18
304 305 0.038526 AGATCGACAACGGAAGCGTT 60.039 50.000 0.00 0.00 40.21 4.84
305 306 0.806868 TAGATCGACAACGGAAGCGT 59.193 50.000 0.00 0.00 40.21 5.07
306 307 1.189403 GTAGATCGACAACGGAAGCG 58.811 55.000 0.53 0.00 40.21 4.68
307 308 2.273370 TGTAGATCGACAACGGAAGC 57.727 50.000 6.15 0.00 40.21 3.86
308 309 3.179830 CCTTGTAGATCGACAACGGAAG 58.820 50.000 21.52 12.05 40.21 3.46
309 310 2.094390 CCCTTGTAGATCGACAACGGAA 60.094 50.000 23.12 4.49 37.56 4.30
310 311 1.475280 CCCTTGTAGATCGACAACGGA 59.525 52.381 23.12 4.81 37.56 4.69
311 312 1.203994 ACCCTTGTAGATCGACAACGG 59.796 52.381 24.67 24.67 39.81 4.44
312 313 2.649331 ACCCTTGTAGATCGACAACG 57.351 50.000 16.32 12.60 34.40 4.10
313 314 3.119708 ACGTACCCTTGTAGATCGACAAC 60.120 47.826 16.32 7.35 34.40 3.32
314 315 3.084039 ACGTACCCTTGTAGATCGACAA 58.916 45.455 18.68 18.68 36.98 3.18
315 316 2.715046 ACGTACCCTTGTAGATCGACA 58.285 47.619 4.35 4.35 0.00 4.35
316 317 4.122776 TCTACGTACCCTTGTAGATCGAC 58.877 47.826 0.00 0.00 41.47 4.20
317 318 4.406648 TCTACGTACCCTTGTAGATCGA 57.593 45.455 4.74 0.00 41.47 3.59
322 323 4.639310 AGTGTGATCTACGTACCCTTGTAG 59.361 45.833 0.00 0.62 39.50 2.74
323 324 4.592942 AGTGTGATCTACGTACCCTTGTA 58.407 43.478 0.00 0.00 0.00 2.41
324 325 3.428532 AGTGTGATCTACGTACCCTTGT 58.571 45.455 0.00 0.00 0.00 3.16
325 326 3.181489 GGAGTGTGATCTACGTACCCTTG 60.181 52.174 0.00 0.00 0.00 3.61
326 327 3.022406 GGAGTGTGATCTACGTACCCTT 58.978 50.000 0.00 0.00 0.00 3.95
327 328 2.652590 GGAGTGTGATCTACGTACCCT 58.347 52.381 0.00 0.00 0.00 4.34
328 329 1.680207 GGGAGTGTGATCTACGTACCC 59.320 57.143 0.00 6.18 32.92 3.69
329 330 1.680207 GGGGAGTGTGATCTACGTACC 59.320 57.143 0.00 1.24 0.00 3.34
330 331 1.680207 GGGGGAGTGTGATCTACGTAC 59.320 57.143 0.00 0.00 0.00 3.67
331 332 2.062971 GGGGGAGTGTGATCTACGTA 57.937 55.000 0.00 0.00 0.00 3.57
332 333 2.897699 GGGGGAGTGTGATCTACGT 58.102 57.895 0.00 0.00 0.00 3.57
347 348 1.227674 GCATAGCAACGAGAGGGGG 60.228 63.158 0.00 0.00 0.00 5.40
348 349 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
349 350 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
350 351 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
351 352 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
352 353 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
353 354 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
354 355 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
355 356 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
356 357 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
357 358 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
358 359 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
359 360 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
360 361 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
361 362 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
362 363 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
363 364 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
364 365 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
365 366 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
366 367 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
367 368 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
368 369 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
369 370 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
370 371 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
371 372 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
372 373 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
373 374 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
374 375 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
375 376 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
376 377 0.037697 ATTCCTACGCACACGCAAGA 60.038 50.000 0.00 0.00 45.53 3.02
377 378 0.796312 AATTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
378 379 1.231221 AAATTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
379 380 1.231221 AAAATTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
380 381 2.325509 AAAAATTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
397 398 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
398 399 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
399 400 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
400 401 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
401 402 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
402 403 5.240121 TCTGTTGGGGAACGTAGTAATTTC 58.760 41.667 0.00 0.00 45.00 2.17
403 404 5.231702 TCTGTTGGGGAACGTAGTAATTT 57.768 39.130 0.00 0.00 45.00 1.82
404 405 4.895668 TCTGTTGGGGAACGTAGTAATT 57.104 40.909 0.00 0.00 45.00 1.40
405 406 4.895668 TTCTGTTGGGGAACGTAGTAAT 57.104 40.909 0.00 0.00 45.00 1.89
406 407 4.895668 ATTCTGTTGGGGAACGTAGTAA 57.104 40.909 0.00 0.00 45.00 2.24
407 408 6.342906 CAATATTCTGTTGGGGAACGTAGTA 58.657 40.000 0.00 0.00 45.00 1.82
408 409 5.860360 CCAATATTCTGTTGGGGAACGTAGT 60.860 44.000 0.00 0.00 42.52 2.73
409 410 4.574828 CCAATATTCTGTTGGGGAACGTAG 59.425 45.833 0.00 0.00 41.90 3.51
410 411 4.519213 CCAATATTCTGTTGGGGAACGTA 58.481 43.478 0.00 0.00 41.90 3.57
411 412 3.352648 CCAATATTCTGTTGGGGAACGT 58.647 45.455 0.00 0.00 41.90 3.99
419 420 6.767902 AGTGCTATGGTACCAATATTCTGTTG 59.232 38.462 20.76 1.71 0.00 3.33
420 421 6.900194 AGTGCTATGGTACCAATATTCTGTT 58.100 36.000 20.76 0.82 0.00 3.16
421 422 6.464465 GGAGTGCTATGGTACCAATATTCTGT 60.464 42.308 20.76 1.65 0.00 3.41
422 423 5.934625 GGAGTGCTATGGTACCAATATTCTG 59.065 44.000 20.76 5.34 0.00 3.02
423 424 5.013183 GGGAGTGCTATGGTACCAATATTCT 59.987 44.000 20.76 14.48 0.00 2.40
424 425 5.013183 AGGGAGTGCTATGGTACCAATATTC 59.987 44.000 20.76 11.63 0.00 1.75
425 426 4.913968 AGGGAGTGCTATGGTACCAATATT 59.086 41.667 20.76 4.60 0.00 1.28
426 427 4.503398 AGGGAGTGCTATGGTACCAATAT 58.497 43.478 20.76 5.03 0.00 1.28
427 428 3.901844 GAGGGAGTGCTATGGTACCAATA 59.098 47.826 20.76 10.82 0.00 1.90
428 429 2.706190 GAGGGAGTGCTATGGTACCAAT 59.294 50.000 20.76 10.22 0.00 3.16
429 430 2.116238 GAGGGAGTGCTATGGTACCAA 58.884 52.381 20.76 7.62 0.00 3.67
430 431 1.291033 AGAGGGAGTGCTATGGTACCA 59.709 52.381 18.99 18.99 0.00 3.25
431 432 1.689273 CAGAGGGAGTGCTATGGTACC 59.311 57.143 4.43 4.43 0.00 3.34
432 433 2.389715 ACAGAGGGAGTGCTATGGTAC 58.610 52.381 0.00 0.00 0.00 3.34
433 434 2.848678 ACAGAGGGAGTGCTATGGTA 57.151 50.000 0.00 0.00 0.00 3.25
434 435 2.848678 TACAGAGGGAGTGCTATGGT 57.151 50.000 0.00 0.00 0.00 3.55
435 436 4.696479 ATTTACAGAGGGAGTGCTATGG 57.304 45.455 0.00 0.00 0.00 2.74
436 437 8.682936 AATTAATTTACAGAGGGAGTGCTATG 57.317 34.615 0.00 0.00 0.00 2.23
439 440 9.178758 CTTAAATTAATTTACAGAGGGAGTGCT 57.821 33.333 18.16 0.00 32.42 4.40
440 441 9.174166 TCTTAAATTAATTTACAGAGGGAGTGC 57.826 33.333 18.16 0.00 32.42 4.40
508 509 9.454859 CAAAAGATTATCAGTACTCCCTTTTCT 57.545 33.333 0.00 0.00 32.37 2.52
509 510 9.449719 TCAAAAGATTATCAGTACTCCCTTTTC 57.550 33.333 0.00 0.00 32.37 2.29
510 511 9.981460 ATCAAAAGATTATCAGTACTCCCTTTT 57.019 29.630 0.00 0.00 34.23 2.27
555 556 4.696479 AATACTCTCCACTGCCTATTGG 57.304 45.455 0.00 0.00 0.00 3.16
556 557 5.525378 GTCAAATACTCTCCACTGCCTATTG 59.475 44.000 0.00 0.00 0.00 1.90
557 558 5.189736 TGTCAAATACTCTCCACTGCCTATT 59.810 40.000 0.00 0.00 0.00 1.73
558 559 4.716784 TGTCAAATACTCTCCACTGCCTAT 59.283 41.667 0.00 0.00 0.00 2.57
559 560 4.093743 TGTCAAATACTCTCCACTGCCTA 58.906 43.478 0.00 0.00 0.00 3.93
560 561 2.906389 TGTCAAATACTCTCCACTGCCT 59.094 45.455 0.00 0.00 0.00 4.75
561 562 3.334583 TGTCAAATACTCTCCACTGCC 57.665 47.619 0.00 0.00 0.00 4.85
562 563 5.689383 TTTTGTCAAATACTCTCCACTGC 57.311 39.130 0.00 0.00 0.00 4.40
688 689 2.738643 CGGCTAACTGGACGATCAACAT 60.739 50.000 0.00 0.00 40.66 2.71
807 810 3.322466 CCCTGGCTGGTTCCGACT 61.322 66.667 9.73 0.00 0.00 4.18
889 905 2.799126 AGGAAGAAGAGAGAGCTCGA 57.201 50.000 8.37 0.00 45.98 4.04
909 925 0.599204 GCAGTCGTCGGAGGAAACAA 60.599 55.000 1.41 0.00 0.00 2.83
956 972 0.111061 TGTCTCATTGCTGTTGGGCT 59.889 50.000 0.00 0.00 0.00 5.19
979 995 1.638388 TACTCGTCATCGTCGGCGTT 61.638 55.000 10.18 0.00 39.49 4.84
1111 1127 4.761739 CCACAACACCTCACACATAAGAAT 59.238 41.667 0.00 0.00 0.00 2.40
1330 1347 9.912634 AAATAAATCTACACATGAAAACCACTG 57.087 29.630 0.00 0.00 0.00 3.66
1516 1533 6.671190 TCAATGTTTGTCTGAATGCAGTAAG 58.329 36.000 0.00 0.00 42.84 2.34
2108 2125 1.067354 GCTTTTCCTTGCACCCATGAG 60.067 52.381 0.00 0.00 0.00 2.90
2141 2158 3.259374 TCACTCCTCCATGACAACTTCTC 59.741 47.826 0.00 0.00 0.00 2.87
2756 2854 1.065636 AGAGGTACGACGATCTGGACA 60.066 52.381 0.00 0.00 0.00 4.02
2761 2859 1.752683 AGCAAGAGGTACGACGATCT 58.247 50.000 0.00 0.00 0.00 2.75
3047 3166 1.596203 GCATGGAGCAGCGCTATGA 60.596 57.895 23.75 0.00 44.79 2.15
3120 3239 0.177141 GTACACCAGCGCTATTGGGA 59.823 55.000 17.65 4.66 40.11 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.