Multiple sequence alignment - TraesCS2A01G540900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G540900 | chr2A | 100.000 | 3050 | 0 | 0 | 1 | 3050 | 752747932 | 752750981 | 0.000000e+00 | 5633 |
1 | TraesCS2A01G540900 | chr2A | 79.282 | 975 | 152 | 32 | 1700 | 2654 | 752758667 | 752759611 | 1.190000e-178 | 636 |
2 | TraesCS2A01G540900 | chr2A | 75.465 | 1182 | 230 | 40 | 897 | 2051 | 752706762 | 752705614 | 3.480000e-144 | 521 |
3 | TraesCS2A01G540900 | chr2A | 82.331 | 266 | 36 | 6 | 2394 | 2654 | 752779142 | 752779401 | 1.420000e-53 | 220 |
4 | TraesCS2A01G540900 | chr2A | 93.182 | 88 | 4 | 1 | 319 | 404 | 676127947 | 676127860 | 8.880000e-26 | 128 |
5 | TraesCS2A01G540900 | chr2D | 96.724 | 1740 | 37 | 3 | 403 | 2128 | 620883196 | 620884929 | 0.000000e+00 | 2880 |
6 | TraesCS2A01G540900 | chr2D | 78.193 | 1096 | 207 | 21 | 1106 | 2179 | 620921569 | 620922654 | 0.000000e+00 | 671 |
7 | TraesCS2A01G540900 | chr2D | 79.342 | 881 | 154 | 23 | 1688 | 2558 | 620910674 | 620911536 | 7.280000e-166 | 593 |
8 | TraesCS2A01G540900 | chr2D | 89.367 | 395 | 23 | 3 | 2336 | 2729 | 620885110 | 620885486 | 2.130000e-131 | 479 |
9 | TraesCS2A01G540900 | chr2D | 93.769 | 321 | 17 | 3 | 2733 | 3050 | 620885555 | 620885875 | 2.130000e-131 | 479 |
10 | TraesCS2A01G540900 | chr2D | 93.443 | 244 | 12 | 2 | 1 | 243 | 620882945 | 620883185 | 2.890000e-95 | 359 |
11 | TraesCS2A01G540900 | chr2D | 92.366 | 131 | 7 | 2 | 2127 | 2257 | 620884972 | 620885099 | 1.870000e-42 | 183 |
12 | TraesCS2A01G540900 | chr2D | 84.810 | 158 | 17 | 5 | 2767 | 2918 | 620914532 | 620914688 | 5.270000e-33 | 152 |
13 | TraesCS2A01G540900 | chr2D | 94.186 | 86 | 3 | 1 | 318 | 401 | 331376517 | 331376432 | 2.470000e-26 | 130 |
14 | TraesCS2A01G540900 | chr2B | 78.132 | 1285 | 217 | 41 | 1382 | 2654 | 761888708 | 761889940 | 0.000000e+00 | 758 |
15 | TraesCS2A01G540900 | chr2B | 75.819 | 1373 | 272 | 41 | 838 | 2179 | 761984322 | 761985665 | 2.560000e-180 | 641 |
16 | TraesCS2A01G540900 | chr2B | 77.391 | 920 | 164 | 25 | 1279 | 2179 | 761960538 | 761961432 | 9.760000e-140 | 507 |
17 | TraesCS2A01G540900 | chr3A | 96.512 | 86 | 1 | 1 | 318 | 401 | 406307406 | 406307321 | 1.140000e-29 | 141 |
18 | TraesCS2A01G540900 | chr1A | 97.500 | 80 | 2 | 0 | 241 | 320 | 546321104 | 546321183 | 1.470000e-28 | 137 |
19 | TraesCS2A01G540900 | chr7A | 98.684 | 76 | 1 | 0 | 245 | 320 | 651953094 | 651953169 | 5.300000e-28 | 135 |
20 | TraesCS2A01G540900 | chr4B | 98.684 | 76 | 1 | 0 | 245 | 320 | 58974677 | 58974602 | 5.300000e-28 | 135 |
21 | TraesCS2A01G540900 | chr7D | 96.296 | 81 | 3 | 0 | 240 | 320 | 133333225 | 133333145 | 1.910000e-27 | 134 |
22 | TraesCS2A01G540900 | chrUn | 96.250 | 80 | 3 | 0 | 241 | 320 | 62199453 | 62199532 | 6.860000e-27 | 132 |
23 | TraesCS2A01G540900 | chrUn | 96.250 | 80 | 3 | 0 | 241 | 320 | 252182059 | 252182138 | 6.860000e-27 | 132 |
24 | TraesCS2A01G540900 | chrUn | 96.250 | 80 | 3 | 0 | 241 | 320 | 304197104 | 304197183 | 6.860000e-27 | 132 |
25 | TraesCS2A01G540900 | chrUn | 93.103 | 87 | 5 | 1 | 318 | 403 | 314867460 | 314867374 | 3.190000e-25 | 126 |
26 | TraesCS2A01G540900 | chr6D | 96.250 | 80 | 3 | 0 | 241 | 320 | 239253865 | 239253944 | 6.860000e-27 | 132 |
27 | TraesCS2A01G540900 | chr6D | 94.118 | 85 | 4 | 1 | 318 | 401 | 37048860 | 37048944 | 8.880000e-26 | 128 |
28 | TraesCS2A01G540900 | chr3B | 96.250 | 80 | 3 | 0 | 241 | 320 | 389662078 | 389661999 | 6.860000e-27 | 132 |
29 | TraesCS2A01G540900 | chr4D | 94.186 | 86 | 3 | 1 | 318 | 401 | 68019406 | 68019491 | 2.470000e-26 | 130 |
30 | TraesCS2A01G540900 | chr4D | 94.186 | 86 | 3 | 1 | 318 | 401 | 406881759 | 406881844 | 2.470000e-26 | 130 |
31 | TraesCS2A01G540900 | chr1D | 94.186 | 86 | 3 | 1 | 318 | 401 | 376845805 | 376845890 | 2.470000e-26 | 130 |
32 | TraesCS2A01G540900 | chr1D | 93.182 | 88 | 4 | 1 | 318 | 403 | 396411552 | 396411639 | 8.880000e-26 | 128 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G540900 | chr2A | 752747932 | 752750981 | 3049 | False | 5633.0 | 5633 | 100.0000 | 1 | 3050 | 1 | chr2A.!!$F1 | 3049 |
1 | TraesCS2A01G540900 | chr2A | 752758667 | 752759611 | 944 | False | 636.0 | 636 | 79.2820 | 1700 | 2654 | 1 | chr2A.!!$F2 | 954 |
2 | TraesCS2A01G540900 | chr2A | 752705614 | 752706762 | 1148 | True | 521.0 | 521 | 75.4650 | 897 | 2051 | 1 | chr2A.!!$R2 | 1154 |
3 | TraesCS2A01G540900 | chr2D | 620882945 | 620885875 | 2930 | False | 876.0 | 2880 | 93.1338 | 1 | 3050 | 5 | chr2D.!!$F2 | 3049 |
4 | TraesCS2A01G540900 | chr2D | 620921569 | 620922654 | 1085 | False | 671.0 | 671 | 78.1930 | 1106 | 2179 | 1 | chr2D.!!$F1 | 1073 |
5 | TraesCS2A01G540900 | chr2D | 620910674 | 620914688 | 4014 | False | 372.5 | 593 | 82.0760 | 1688 | 2918 | 2 | chr2D.!!$F3 | 1230 |
6 | TraesCS2A01G540900 | chr2B | 761888708 | 761889940 | 1232 | False | 758.0 | 758 | 78.1320 | 1382 | 2654 | 1 | chr2B.!!$F1 | 1272 |
7 | TraesCS2A01G540900 | chr2B | 761984322 | 761985665 | 1343 | False | 641.0 | 641 | 75.8190 | 838 | 2179 | 1 | chr2B.!!$F3 | 1341 |
8 | TraesCS2A01G540900 | chr2B | 761960538 | 761961432 | 894 | False | 507.0 | 507 | 77.3910 | 1279 | 2179 | 1 | chr2B.!!$F2 | 900 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
262 | 264 | 0.252696 | TGCTGGTCATAGTGGGGAGT | 60.253 | 55.000 | 0.0 | 0.00 | 0.00 | 3.85 | F |
263 | 265 | 1.007842 | TGCTGGTCATAGTGGGGAGTA | 59.992 | 52.381 | 0.0 | 0.00 | 0.00 | 2.59 | F |
1903 | 1952 | 1.039856 | GGACCCTCAGCTCAGAGATC | 58.960 | 60.000 | 0.0 | 0.89 | 37.87 | 2.75 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1883 | 1932 | 0.636101 | ATCTCTGAGCTGAGGGTCCT | 59.364 | 55.000 | 0.00 | 0.0 | 39.02 | 3.85 | R |
1936 | 1985 | 1.447314 | GGAAGTCGCGGTAACCTGG | 60.447 | 63.158 | 6.13 | 0.0 | 0.00 | 4.45 | R |
2997 | 6191 | 0.398696 | TTGGGCCTTCTTCGCTGTTA | 59.601 | 50.000 | 4.53 | 0.0 | 0.00 | 2.41 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
30 | 31 | 3.824443 | TGTGATTTCAGACGTCTAGACCA | 59.176 | 43.478 | 19.57 | 9.95 | 0.00 | 4.02 |
65 | 66 | 9.671279 | AAGTTTGATGTATGATGTTAGATGACA | 57.329 | 29.630 | 0.00 | 0.00 | 0.00 | 3.58 |
88 | 89 | 2.859165 | AGTGTCCGGACAACATGATT | 57.141 | 45.000 | 37.75 | 14.75 | 43.77 | 2.57 |
89 | 90 | 3.973206 | AGTGTCCGGACAACATGATTA | 57.027 | 42.857 | 37.75 | 10.31 | 43.77 | 1.75 |
90 | 91 | 4.280436 | AGTGTCCGGACAACATGATTAA | 57.720 | 40.909 | 37.75 | 9.49 | 43.77 | 1.40 |
91 | 92 | 4.843728 | AGTGTCCGGACAACATGATTAAT | 58.156 | 39.130 | 37.75 | 9.47 | 43.77 | 1.40 |
95 | 96 | 5.820423 | TGTCCGGACAACATGATTAATAAGG | 59.180 | 40.000 | 34.60 | 0.00 | 38.56 | 2.69 |
108 | 109 | 5.588246 | TGATTAATAAGGCATTTGCAGACGA | 59.412 | 36.000 | 4.74 | 0.00 | 44.36 | 4.20 |
113 | 114 | 2.161855 | AGGCATTTGCAGACGATTTGA | 58.838 | 42.857 | 4.74 | 0.00 | 44.36 | 2.69 |
167 | 169 | 8.170553 | GTGTCATTTACGACGGTTATGTTTTAT | 58.829 | 33.333 | 0.00 | 0.00 | 38.84 | 1.40 |
172 | 174 | 7.649370 | TTACGACGGTTATGTTTTATCAACA | 57.351 | 32.000 | 0.00 | 0.00 | 34.31 | 3.33 |
222 | 224 | 6.631971 | TTGCTCACTTATTCAACATGACAA | 57.368 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
243 | 245 | 3.097614 | ACTGTCCTAGTGGAGCGTTTAT | 58.902 | 45.455 | 0.00 | 0.00 | 44.16 | 1.40 |
244 | 246 | 3.119101 | ACTGTCCTAGTGGAGCGTTTATG | 60.119 | 47.826 | 0.00 | 0.00 | 44.16 | 1.90 |
245 | 247 | 2.202566 | GTCCTAGTGGAGCGTTTATGC | 58.797 | 52.381 | 0.00 | 0.00 | 44.16 | 3.14 |
255 | 257 | 3.543680 | AGCGTTTATGCTGGTCATAGT | 57.456 | 42.857 | 0.00 | 0.00 | 45.28 | 2.12 |
256 | 258 | 3.198068 | AGCGTTTATGCTGGTCATAGTG | 58.802 | 45.455 | 0.00 | 0.00 | 45.28 | 2.74 |
257 | 259 | 2.287915 | GCGTTTATGCTGGTCATAGTGG | 59.712 | 50.000 | 0.00 | 0.00 | 38.75 | 4.00 |
258 | 260 | 2.872245 | CGTTTATGCTGGTCATAGTGGG | 59.128 | 50.000 | 0.00 | 0.00 | 38.75 | 4.61 |
259 | 261 | 3.214328 | GTTTATGCTGGTCATAGTGGGG | 58.786 | 50.000 | 0.00 | 0.00 | 38.75 | 4.96 |
260 | 262 | 2.487746 | TATGCTGGTCATAGTGGGGA | 57.512 | 50.000 | 0.00 | 0.00 | 36.63 | 4.81 |
261 | 263 | 1.135094 | ATGCTGGTCATAGTGGGGAG | 58.865 | 55.000 | 0.00 | 0.00 | 32.59 | 4.30 |
262 | 264 | 0.252696 | TGCTGGTCATAGTGGGGAGT | 60.253 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
263 | 265 | 1.007842 | TGCTGGTCATAGTGGGGAGTA | 59.992 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
264 | 266 | 2.116238 | GCTGGTCATAGTGGGGAGTAA | 58.884 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
265 | 267 | 2.158943 | GCTGGTCATAGTGGGGAGTAAC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 2.50 |
266 | 268 | 3.375699 | CTGGTCATAGTGGGGAGTAACT | 58.624 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
267 | 269 | 3.775316 | CTGGTCATAGTGGGGAGTAACTT | 59.225 | 47.826 | 0.00 | 0.00 | 0.00 | 2.66 |
268 | 270 | 4.950361 | TGGTCATAGTGGGGAGTAACTTA | 58.050 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
269 | 271 | 5.535029 | TGGTCATAGTGGGGAGTAACTTAT | 58.465 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
270 | 272 | 6.685541 | TGGTCATAGTGGGGAGTAACTTATA | 58.314 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
271 | 273 | 6.552350 | TGGTCATAGTGGGGAGTAACTTATAC | 59.448 | 42.308 | 0.00 | 0.00 | 0.00 | 1.47 |
272 | 274 | 6.781507 | GGTCATAGTGGGGAGTAACTTATACT | 59.218 | 42.308 | 0.00 | 0.00 | 0.00 | 2.12 |
273 | 275 | 7.946776 | GGTCATAGTGGGGAGTAACTTATACTA | 59.053 | 40.741 | 0.00 | 0.00 | 0.00 | 1.82 |
274 | 276 | 9.359653 | GTCATAGTGGGGAGTAACTTATACTAA | 57.640 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
277 | 279 | 9.893975 | ATAGTGGGGAGTAACTTATACTAATGT | 57.106 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
278 | 280 | 8.247666 | AGTGGGGAGTAACTTATACTAATGTC | 57.752 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
279 | 281 | 7.842743 | AGTGGGGAGTAACTTATACTAATGTCA | 59.157 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
280 | 282 | 8.648693 | GTGGGGAGTAACTTATACTAATGTCAT | 58.351 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
281 | 283 | 8.647796 | TGGGGAGTAACTTATACTAATGTCATG | 58.352 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
282 | 284 | 7.603024 | GGGGAGTAACTTATACTAATGTCATGC | 59.397 | 40.741 | 0.00 | 0.00 | 0.00 | 4.06 |
283 | 285 | 8.148351 | GGGAGTAACTTATACTAATGTCATGCA | 58.852 | 37.037 | 0.00 | 0.00 | 0.00 | 3.96 |
284 | 286 | 9.712305 | GGAGTAACTTATACTAATGTCATGCAT | 57.288 | 33.333 | 0.00 | 0.00 | 40.03 | 3.96 |
289 | 291 | 8.744008 | ACTTATACTAATGTCATGCATACGAC | 57.256 | 34.615 | 9.64 | 9.64 | 36.67 | 4.34 |
290 | 292 | 8.357402 | ACTTATACTAATGTCATGCATACGACA | 58.643 | 33.333 | 18.89 | 18.89 | 45.62 | 4.35 |
291 | 293 | 8.515473 | TTATACTAATGTCATGCATACGACAC | 57.485 | 34.615 | 18.95 | 4.05 | 44.45 | 3.67 |
292 | 294 | 5.011090 | ACTAATGTCATGCATACGACACT | 57.989 | 39.130 | 18.95 | 12.73 | 44.45 | 3.55 |
293 | 295 | 6.144078 | ACTAATGTCATGCATACGACACTA | 57.856 | 37.500 | 18.95 | 13.13 | 44.45 | 2.74 |
294 | 296 | 6.209361 | ACTAATGTCATGCATACGACACTAG | 58.791 | 40.000 | 23.47 | 23.47 | 43.88 | 2.57 |
295 | 297 | 4.655762 | ATGTCATGCATACGACACTAGT | 57.344 | 40.909 | 18.95 | 4.13 | 44.45 | 2.57 |
296 | 298 | 4.028852 | TGTCATGCATACGACACTAGTC | 57.971 | 45.455 | 14.14 | 0.00 | 37.23 | 2.59 |
297 | 299 | 3.694566 | TGTCATGCATACGACACTAGTCT | 59.305 | 43.478 | 14.14 | 0.00 | 42.73 | 3.24 |
298 | 300 | 4.879545 | TGTCATGCATACGACACTAGTCTA | 59.120 | 41.667 | 14.14 | 0.00 | 42.73 | 2.59 |
299 | 301 | 5.355910 | TGTCATGCATACGACACTAGTCTAA | 59.644 | 40.000 | 14.14 | 0.00 | 42.73 | 2.10 |
300 | 302 | 5.910166 | GTCATGCATACGACACTAGTCTAAG | 59.090 | 44.000 | 11.29 | 0.00 | 42.73 | 2.18 |
301 | 303 | 5.589050 | TCATGCATACGACACTAGTCTAAGT | 59.411 | 40.000 | 0.00 | 0.00 | 42.73 | 2.24 |
302 | 304 | 5.892160 | TGCATACGACACTAGTCTAAGTT | 57.108 | 39.130 | 0.00 | 0.00 | 42.73 | 2.66 |
303 | 305 | 6.990341 | TGCATACGACACTAGTCTAAGTTA | 57.010 | 37.500 | 0.00 | 0.00 | 42.73 | 2.24 |
304 | 306 | 6.779117 | TGCATACGACACTAGTCTAAGTTAC | 58.221 | 40.000 | 0.00 | 0.00 | 42.73 | 2.50 |
305 | 307 | 6.596888 | TGCATACGACACTAGTCTAAGTTACT | 59.403 | 38.462 | 0.00 | 0.00 | 42.73 | 2.24 |
306 | 308 | 7.765819 | TGCATACGACACTAGTCTAAGTTACTA | 59.234 | 37.037 | 0.00 | 0.00 | 42.73 | 1.82 |
307 | 309 | 8.061268 | GCATACGACACTAGTCTAAGTTACTAC | 58.939 | 40.741 | 0.00 | 0.00 | 42.73 | 2.73 |
308 | 310 | 6.976636 | ACGACACTAGTCTAAGTTACTACC | 57.023 | 41.667 | 0.00 | 0.00 | 42.73 | 3.18 |
309 | 311 | 6.706295 | ACGACACTAGTCTAAGTTACTACCT | 58.294 | 40.000 | 0.00 | 0.00 | 42.73 | 3.08 |
310 | 312 | 7.164803 | ACGACACTAGTCTAAGTTACTACCTT | 58.835 | 38.462 | 0.00 | 0.00 | 42.73 | 3.50 |
311 | 313 | 7.333174 | ACGACACTAGTCTAAGTTACTACCTTC | 59.667 | 40.741 | 0.00 | 0.00 | 42.73 | 3.46 |
312 | 314 | 7.332926 | CGACACTAGTCTAAGTTACTACCTTCA | 59.667 | 40.741 | 0.00 | 0.00 | 42.73 | 3.02 |
313 | 315 | 9.176460 | GACACTAGTCTAAGTTACTACCTTCAT | 57.824 | 37.037 | 0.00 | 0.00 | 41.64 | 2.57 |
318 | 320 | 7.998580 | AGTCTAAGTTACTACCTTCATAGTGC | 58.001 | 38.462 | 0.00 | 0.00 | 36.09 | 4.40 |
319 | 321 | 7.614583 | AGTCTAAGTTACTACCTTCATAGTGCA | 59.385 | 37.037 | 0.00 | 0.00 | 36.09 | 4.57 |
320 | 322 | 7.701501 | GTCTAAGTTACTACCTTCATAGTGCAC | 59.298 | 40.741 | 9.40 | 9.40 | 36.09 | 4.57 |
321 | 323 | 5.340439 | AGTTACTACCTTCATAGTGCACC | 57.660 | 43.478 | 14.63 | 0.00 | 36.09 | 5.01 |
322 | 324 | 5.024118 | AGTTACTACCTTCATAGTGCACCT | 58.976 | 41.667 | 14.63 | 3.48 | 36.09 | 4.00 |
323 | 325 | 5.127356 | AGTTACTACCTTCATAGTGCACCTC | 59.873 | 44.000 | 14.63 | 0.00 | 36.09 | 3.85 |
324 | 326 | 3.714144 | ACTACCTTCATAGTGCACCTCT | 58.286 | 45.455 | 14.63 | 0.00 | 34.02 | 3.69 |
325 | 327 | 4.097418 | ACTACCTTCATAGTGCACCTCTT | 58.903 | 43.478 | 14.63 | 0.00 | 34.02 | 2.85 |
326 | 328 | 4.532521 | ACTACCTTCATAGTGCACCTCTTT | 59.467 | 41.667 | 14.63 | 0.00 | 34.02 | 2.52 |
327 | 329 | 3.944087 | ACCTTCATAGTGCACCTCTTTC | 58.056 | 45.455 | 14.63 | 0.00 | 0.00 | 2.62 |
328 | 330 | 3.274288 | CCTTCATAGTGCACCTCTTTCC | 58.726 | 50.000 | 14.63 | 0.00 | 0.00 | 3.13 |
329 | 331 | 3.054802 | CCTTCATAGTGCACCTCTTTCCT | 60.055 | 47.826 | 14.63 | 0.00 | 0.00 | 3.36 |
330 | 332 | 3.895232 | TCATAGTGCACCTCTTTCCTC | 57.105 | 47.619 | 14.63 | 0.00 | 0.00 | 3.71 |
331 | 333 | 3.173151 | TCATAGTGCACCTCTTTCCTCA | 58.827 | 45.455 | 14.63 | 0.00 | 0.00 | 3.86 |
332 | 334 | 3.776969 | TCATAGTGCACCTCTTTCCTCAT | 59.223 | 43.478 | 14.63 | 0.00 | 0.00 | 2.90 |
333 | 335 | 4.225942 | TCATAGTGCACCTCTTTCCTCATT | 59.774 | 41.667 | 14.63 | 0.00 | 0.00 | 2.57 |
334 | 336 | 5.425217 | TCATAGTGCACCTCTTTCCTCATTA | 59.575 | 40.000 | 14.63 | 0.00 | 0.00 | 1.90 |
335 | 337 | 4.640771 | AGTGCACCTCTTTCCTCATTAA | 57.359 | 40.909 | 14.63 | 0.00 | 0.00 | 1.40 |
336 | 338 | 4.985538 | AGTGCACCTCTTTCCTCATTAAA | 58.014 | 39.130 | 14.63 | 0.00 | 0.00 | 1.52 |
337 | 339 | 5.574188 | AGTGCACCTCTTTCCTCATTAAAT | 58.426 | 37.500 | 14.63 | 0.00 | 0.00 | 1.40 |
338 | 340 | 6.721318 | AGTGCACCTCTTTCCTCATTAAATA | 58.279 | 36.000 | 14.63 | 0.00 | 0.00 | 1.40 |
339 | 341 | 6.599638 | AGTGCACCTCTTTCCTCATTAAATAC | 59.400 | 38.462 | 14.63 | 0.00 | 0.00 | 1.89 |
340 | 342 | 6.599638 | GTGCACCTCTTTCCTCATTAAATACT | 59.400 | 38.462 | 5.22 | 0.00 | 0.00 | 2.12 |
341 | 343 | 7.121315 | GTGCACCTCTTTCCTCATTAAATACTT | 59.879 | 37.037 | 5.22 | 0.00 | 0.00 | 2.24 |
342 | 344 | 7.121168 | TGCACCTCTTTCCTCATTAAATACTTG | 59.879 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
343 | 345 | 7.475840 | CACCTCTTTCCTCATTAAATACTTGC | 58.524 | 38.462 | 0.00 | 0.00 | 0.00 | 4.01 |
344 | 346 | 6.603599 | ACCTCTTTCCTCATTAAATACTTGCC | 59.396 | 38.462 | 0.00 | 0.00 | 0.00 | 4.52 |
345 | 347 | 6.603201 | CCTCTTTCCTCATTAAATACTTGCCA | 59.397 | 38.462 | 0.00 | 0.00 | 0.00 | 4.92 |
346 | 348 | 7.286316 | CCTCTTTCCTCATTAAATACTTGCCAT | 59.714 | 37.037 | 0.00 | 0.00 | 0.00 | 4.40 |
347 | 349 | 9.342308 | CTCTTTCCTCATTAAATACTTGCCATA | 57.658 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
348 | 350 | 9.866655 | TCTTTCCTCATTAAATACTTGCCATAT | 57.133 | 29.630 | 0.00 | 0.00 | 0.00 | 1.78 |
365 | 367 | 9.520204 | CTTGCCATATAAGTAAAATTGTCTTGG | 57.480 | 33.333 | 0.00 | 0.00 | 0.00 | 3.61 |
366 | 368 | 8.006298 | TGCCATATAAGTAAAATTGTCTTGGG | 57.994 | 34.615 | 0.00 | 0.00 | 0.00 | 4.12 |
367 | 369 | 7.836685 | TGCCATATAAGTAAAATTGTCTTGGGA | 59.163 | 33.333 | 0.00 | 0.00 | 0.00 | 4.37 |
368 | 370 | 8.860088 | GCCATATAAGTAAAATTGTCTTGGGAT | 58.140 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
372 | 374 | 6.976934 | AAGTAAAATTGTCTTGGGATGTGT | 57.023 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
373 | 375 | 6.976934 | AGTAAAATTGTCTTGGGATGTGTT | 57.023 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
374 | 376 | 8.472007 | AAGTAAAATTGTCTTGGGATGTGTTA | 57.528 | 30.769 | 0.00 | 0.00 | 0.00 | 2.41 |
375 | 377 | 8.472007 | AGTAAAATTGTCTTGGGATGTGTTAA | 57.528 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
376 | 378 | 8.919145 | AGTAAAATTGTCTTGGGATGTGTTAAA | 58.081 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
377 | 379 | 9.705290 | GTAAAATTGTCTTGGGATGTGTTAAAT | 57.295 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
380 | 382 | 9.705290 | AAATTGTCTTGGGATGTGTTAAATTAC | 57.295 | 29.630 | 0.00 | 0.00 | 0.00 | 1.89 |
381 | 383 | 8.650143 | ATTGTCTTGGGATGTGTTAAATTACT | 57.350 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
382 | 384 | 9.747898 | ATTGTCTTGGGATGTGTTAAATTACTA | 57.252 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
383 | 385 | 9.747898 | TTGTCTTGGGATGTGTTAAATTACTAT | 57.252 | 29.630 | 0.00 | 0.00 | 0.00 | 2.12 |
384 | 386 | 9.391006 | TGTCTTGGGATGTGTTAAATTACTATC | 57.609 | 33.333 | 0.00 | 0.00 | 0.00 | 2.08 |
385 | 387 | 9.614792 | GTCTTGGGATGTGTTAAATTACTATCT | 57.385 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
470 | 472 | 1.237285 | GCCGTGCCACACTTCTCATT | 61.237 | 55.000 | 0.00 | 0.00 | 31.34 | 2.57 |
496 | 498 | 1.751927 | CCCTGCCTGCCAATCTCAC | 60.752 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
644 | 646 | 1.476891 | GTGACCGGAGCACAGATAAGA | 59.523 | 52.381 | 21.54 | 0.00 | 36.31 | 2.10 |
645 | 647 | 2.101582 | GTGACCGGAGCACAGATAAGAT | 59.898 | 50.000 | 21.54 | 0.00 | 36.31 | 2.40 |
646 | 648 | 2.362397 | TGACCGGAGCACAGATAAGATC | 59.638 | 50.000 | 9.46 | 0.00 | 0.00 | 2.75 |
647 | 649 | 1.689273 | ACCGGAGCACAGATAAGATCC | 59.311 | 52.381 | 9.46 | 0.00 | 0.00 | 3.36 |
648 | 650 | 1.688735 | CCGGAGCACAGATAAGATCCA | 59.311 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
649 | 651 | 2.546795 | CCGGAGCACAGATAAGATCCAC | 60.547 | 54.545 | 0.00 | 0.00 | 0.00 | 4.02 |
1250 | 1278 | 7.338957 | TGTCTCCAATGCATCATACATGTTTAA | 59.661 | 33.333 | 2.30 | 0.00 | 0.00 | 1.52 |
1836 | 1885 | 5.538433 | CACCTCTTCCCTAACCAAATTTGAA | 59.462 | 40.000 | 19.86 | 3.14 | 0.00 | 2.69 |
1842 | 1891 | 3.447229 | CCCTAACCAAATTTGAATCGGCT | 59.553 | 43.478 | 19.86 | 0.00 | 0.00 | 5.52 |
1847 | 1896 | 3.987220 | ACCAAATTTGAATCGGCTTTTCG | 59.013 | 39.130 | 19.86 | 0.57 | 0.00 | 3.46 |
1881 | 1930 | 2.614229 | GGCTCAGAAGTTCTGGAAGGTC | 60.614 | 54.545 | 28.33 | 15.77 | 44.39 | 3.85 |
1883 | 1932 | 2.634940 | CTCAGAAGTTCTGGAAGGTCCA | 59.365 | 50.000 | 28.33 | 9.28 | 45.98 | 4.02 |
1903 | 1952 | 1.039856 | GGACCCTCAGCTCAGAGATC | 58.960 | 60.000 | 0.00 | 0.89 | 37.87 | 2.75 |
1936 | 1985 | 3.056304 | GCTATTGCGGAGAGAGTCATTC | 58.944 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
1952 | 2001 | 0.611714 | ATTCCAGGTTACCGCGACTT | 59.388 | 50.000 | 8.23 | 0.00 | 0.00 | 3.01 |
2206 | 4684 | 4.142249 | TGGATACTACATCAACTGGTCACG | 60.142 | 45.833 | 0.00 | 0.00 | 37.61 | 4.35 |
2249 | 4742 | 6.435430 | TTTAATGTCCTGATTGAATGACGG | 57.565 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
2258 | 4758 | 6.316140 | TCCTGATTGAATGACGGATACTTTTG | 59.684 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
2259 | 4759 | 6.094048 | CCTGATTGAATGACGGATACTTTTGT | 59.906 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
2270 | 4770 | 5.585047 | ACGGATACTTTTGTATTCTGCTTCC | 59.415 | 40.000 | 0.00 | 0.00 | 44.91 | 3.46 |
2271 | 4771 | 5.584649 | CGGATACTTTTGTATTCTGCTTCCA | 59.415 | 40.000 | 0.00 | 0.00 | 44.91 | 3.53 |
2272 | 4772 | 6.260936 | CGGATACTTTTGTATTCTGCTTCCAT | 59.739 | 38.462 | 0.00 | 0.00 | 44.91 | 3.41 |
2273 | 4773 | 7.519008 | CGGATACTTTTGTATTCTGCTTCCATC | 60.519 | 40.741 | 0.00 | 0.00 | 44.91 | 3.51 |
2274 | 4774 | 7.283127 | GGATACTTTTGTATTCTGCTTCCATCA | 59.717 | 37.037 | 0.00 | 0.00 | 44.91 | 3.07 |
2275 | 4775 | 8.757982 | ATACTTTTGTATTCTGCTTCCATCAT | 57.242 | 30.769 | 0.00 | 0.00 | 42.53 | 2.45 |
2276 | 4776 | 7.472334 | ACTTTTGTATTCTGCTTCCATCATT | 57.528 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2277 | 4777 | 7.542025 | ACTTTTGTATTCTGCTTCCATCATTC | 58.458 | 34.615 | 0.00 | 0.00 | 0.00 | 2.67 |
2278 | 4778 | 6.455360 | TTTGTATTCTGCTTCCATCATTCC | 57.545 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
2279 | 4779 | 5.114764 | TGTATTCTGCTTCCATCATTCCA | 57.885 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
2280 | 4780 | 5.698104 | TGTATTCTGCTTCCATCATTCCAT | 58.302 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
2290 | 4790 | 5.503662 | TCCATCATTCCATGTCAATTTCG | 57.496 | 39.130 | 0.00 | 0.00 | 0.00 | 3.46 |
2292 | 4792 | 5.066375 | TCCATCATTCCATGTCAATTTCGTC | 59.934 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2293 | 4793 | 4.963276 | TCATTCCATGTCAATTTCGTCC | 57.037 | 40.909 | 0.00 | 0.00 | 0.00 | 4.79 |
2294 | 4794 | 4.331108 | TCATTCCATGTCAATTTCGTCCA | 58.669 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
2306 | 4808 | 5.186992 | TCAATTTCGTCCATAGACTTCCTCA | 59.813 | 40.000 | 0.00 | 0.00 | 41.16 | 3.86 |
2307 | 4809 | 5.677319 | ATTTCGTCCATAGACTTCCTCAA | 57.323 | 39.130 | 0.00 | 0.00 | 41.16 | 3.02 |
2308 | 4810 | 5.477607 | TTTCGTCCATAGACTTCCTCAAA | 57.522 | 39.130 | 0.00 | 0.00 | 41.16 | 2.69 |
2309 | 4811 | 5.677319 | TTCGTCCATAGACTTCCTCAAAT | 57.323 | 39.130 | 0.00 | 0.00 | 41.16 | 2.32 |
2310 | 4812 | 6.785337 | TTCGTCCATAGACTTCCTCAAATA | 57.215 | 37.500 | 0.00 | 0.00 | 41.16 | 1.40 |
2311 | 4813 | 6.392625 | TCGTCCATAGACTTCCTCAAATAG | 57.607 | 41.667 | 0.00 | 0.00 | 41.16 | 1.73 |
2312 | 4814 | 6.127101 | TCGTCCATAGACTTCCTCAAATAGA | 58.873 | 40.000 | 0.00 | 0.00 | 41.16 | 1.98 |
2313 | 4815 | 6.605995 | TCGTCCATAGACTTCCTCAAATAGAA | 59.394 | 38.462 | 0.00 | 0.00 | 41.16 | 2.10 |
2314 | 4816 | 7.123697 | TCGTCCATAGACTTCCTCAAATAGAAA | 59.876 | 37.037 | 0.00 | 0.00 | 41.16 | 2.52 |
2315 | 4817 | 7.764443 | CGTCCATAGACTTCCTCAAATAGAAAA | 59.236 | 37.037 | 0.00 | 0.00 | 41.16 | 2.29 |
2316 | 4818 | 8.884726 | GTCCATAGACTTCCTCAAATAGAAAAC | 58.115 | 37.037 | 0.00 | 0.00 | 40.10 | 2.43 |
2317 | 4819 | 8.602424 | TCCATAGACTTCCTCAAATAGAAAACA | 58.398 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2318 | 4820 | 8.669243 | CCATAGACTTCCTCAAATAGAAAACAC | 58.331 | 37.037 | 0.00 | 0.00 | 0.00 | 3.32 |
2319 | 4821 | 9.442047 | CATAGACTTCCTCAAATAGAAAACACT | 57.558 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
2320 | 4822 | 7.971183 | AGACTTCCTCAAATAGAAAACACTC | 57.029 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2321 | 4823 | 7.509546 | AGACTTCCTCAAATAGAAAACACTCA | 58.490 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
2322 | 4824 | 8.160106 | AGACTTCCTCAAATAGAAAACACTCAT | 58.840 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2323 | 4825 | 9.436957 | GACTTCCTCAAATAGAAAACACTCATA | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
2326 | 4828 | 9.658799 | TTCCTCAAATAGAAAACACTCATAGAG | 57.341 | 33.333 | 0.00 | 0.00 | 35.52 | 2.43 |
2346 | 4848 | 5.858381 | AGAGAACTGACATGCTTAGTTTCA | 58.142 | 37.500 | 10.12 | 0.00 | 34.99 | 2.69 |
2352 | 4854 | 6.498304 | ACTGACATGCTTAGTTTCAAGTTTG | 58.502 | 36.000 | 0.00 | 0.00 | 0.00 | 2.93 |
2364 | 4866 | 5.807011 | AGTTTCAAGTTTGCACAACATTCTC | 59.193 | 36.000 | 12.28 | 2.08 | 0.00 | 2.87 |
2375 | 4878 | 5.465390 | TGCACAACATTCTCTACACACTTAC | 59.535 | 40.000 | 0.00 | 0.00 | 0.00 | 2.34 |
2424 | 4927 | 3.909430 | TGTAGCAGTTAAACAGAGTCCG | 58.091 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
2427 | 4930 | 3.805207 | AGCAGTTAAACAGAGTCCGTTT | 58.195 | 40.909 | 9.36 | 9.36 | 39.75 | 3.60 |
2513 | 5285 | 7.226325 | GGTGATGGAAATCATTTGTGTTTTCAA | 59.774 | 33.333 | 11.72 | 3.91 | 35.97 | 2.69 |
2520 | 5292 | 9.264782 | GAAATCATTTGTGTTTTCAACAAAGTG | 57.735 | 29.630 | 7.66 | 6.53 | 44.16 | 3.16 |
2593 | 5715 | 3.936453 | GGTGAAGCACCGATATAAACACA | 59.064 | 43.478 | 0.22 | 0.00 | 44.95 | 3.72 |
2620 | 5742 | 8.807667 | ATCAACAATCAATCAGTCAAGAAAAC | 57.192 | 30.769 | 0.00 | 0.00 | 0.00 | 2.43 |
2691 | 5813 | 2.223923 | GCATGTAAGACGAGAGCCTCAT | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2703 | 5825 | 2.427453 | AGAGCCTCATCGAAATACGTGT | 59.573 | 45.455 | 0.00 | 0.00 | 43.13 | 4.49 |
2709 | 5831 | 3.961182 | TCATCGAAATACGTGTCCTAGC | 58.039 | 45.455 | 0.00 | 0.00 | 43.13 | 3.42 |
2712 | 5834 | 2.107178 | CGAAATACGTGTCCTAGCGAC | 58.893 | 52.381 | 0.00 | 4.84 | 42.33 | 5.19 |
2714 | 5836 | 1.466856 | AATACGTGTCCTAGCGACCA | 58.533 | 50.000 | 0.00 | 0.00 | 41.18 | 4.02 |
2739 | 5926 | 9.318041 | CATTTCGAGTATGAAGTAAAACAAGTG | 57.682 | 33.333 | 4.13 | 0.00 | 0.00 | 3.16 |
2758 | 5945 | 1.609555 | TGGTAAAACGGCCACATGTTC | 59.390 | 47.619 | 2.24 | 0.00 | 0.00 | 3.18 |
2776 | 5963 | 0.756294 | TCAGAACTTCGGACAGGCAA | 59.244 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2824 | 6017 | 1.153005 | GGGAATCTGGAGCAGCTGG | 60.153 | 63.158 | 17.12 | 0.00 | 0.00 | 4.85 |
2825 | 6018 | 1.823041 | GGAATCTGGAGCAGCTGGC | 60.823 | 63.158 | 17.12 | 7.98 | 45.30 | 4.85 |
2908 | 6101 | 1.997874 | AGCCTAAGTGGGAGCCAGG | 60.998 | 63.158 | 0.00 | 0.00 | 32.34 | 4.45 |
2961 | 6155 | 1.453155 | CCAGCCGCTGTAACAAGATT | 58.547 | 50.000 | 18.98 | 0.00 | 0.00 | 2.40 |
2997 | 6191 | 1.531423 | CAGCAGCTCAAAGACCATGT | 58.469 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2999 | 6193 | 3.076621 | CAGCAGCTCAAAGACCATGTAA | 58.923 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
3004 | 6198 | 2.159653 | GCTCAAAGACCATGTAACAGCG | 60.160 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
3028 | 6222 | 3.321968 | AGAAGGCCCAAGTTGAACAAATC | 59.678 | 43.478 | 3.87 | 0.00 | 0.00 | 2.17 |
3035 | 6229 | 4.290155 | CCAAGTTGAACAAATCCAGAACG | 58.710 | 43.478 | 3.87 | 0.00 | 0.00 | 3.95 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
30 | 31 | 7.119699 | ACATCATACATCAAACTTTCACGACAT | 59.880 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
65 | 66 | 4.280436 | TCATGTTGTCCGGACACTTTAT | 57.720 | 40.909 | 36.40 | 22.95 | 41.67 | 1.40 |
81 | 82 | 7.205297 | GTCTGCAAATGCCTTATTAATCATGT | 58.795 | 34.615 | 2.46 | 0.00 | 41.18 | 3.21 |
88 | 89 | 6.094742 | TCAAATCGTCTGCAAATGCCTTATTA | 59.905 | 34.615 | 2.46 | 0.00 | 41.18 | 0.98 |
89 | 90 | 4.989279 | AATCGTCTGCAAATGCCTTATT | 57.011 | 36.364 | 2.46 | 0.00 | 41.18 | 1.40 |
90 | 91 | 4.398988 | TCAAATCGTCTGCAAATGCCTTAT | 59.601 | 37.500 | 2.46 | 0.00 | 41.18 | 1.73 |
91 | 92 | 3.755905 | TCAAATCGTCTGCAAATGCCTTA | 59.244 | 39.130 | 2.46 | 0.00 | 41.18 | 2.69 |
95 | 96 | 1.906966 | CGTCAAATCGTCTGCAAATGC | 59.093 | 47.619 | 0.00 | 0.00 | 42.50 | 3.56 |
108 | 109 | 4.050553 | CAACCTCAATGTTTGCGTCAAAT | 58.949 | 39.130 | 7.98 | 0.00 | 35.74 | 2.32 |
113 | 114 | 1.032014 | AGCAACCTCAATGTTTGCGT | 58.968 | 45.000 | 9.86 | 0.30 | 31.77 | 5.24 |
167 | 169 | 9.829507 | ATTTATTTCAATCCACAAAAGTGTTGA | 57.170 | 25.926 | 0.00 | 0.00 | 35.07 | 3.18 |
217 | 219 | 1.618837 | GCTCCACTAGGACAGTTGTCA | 59.381 | 52.381 | 13.73 | 0.00 | 46.47 | 3.58 |
222 | 224 | 1.339097 | AAACGCTCCACTAGGACAGT | 58.661 | 50.000 | 0.00 | 0.00 | 39.61 | 3.55 |
243 | 245 | 0.252696 | ACTCCCCACTATGACCAGCA | 60.253 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
244 | 246 | 1.789523 | TACTCCCCACTATGACCAGC | 58.210 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
245 | 247 | 3.375699 | AGTTACTCCCCACTATGACCAG | 58.624 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
246 | 248 | 3.484953 | AGTTACTCCCCACTATGACCA | 57.515 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
248 | 250 | 7.836479 | AGTATAAGTTACTCCCCACTATGAC | 57.164 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
251 | 253 | 9.893975 | ACATTAGTATAAGTTACTCCCCACTAT | 57.106 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
252 | 254 | 9.359653 | GACATTAGTATAAGTTACTCCCCACTA | 57.640 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
253 | 255 | 7.842743 | TGACATTAGTATAAGTTACTCCCCACT | 59.157 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
254 | 256 | 8.015185 | TGACATTAGTATAAGTTACTCCCCAC | 57.985 | 38.462 | 0.00 | 0.00 | 0.00 | 4.61 |
255 | 257 | 8.647796 | CATGACATTAGTATAAGTTACTCCCCA | 58.352 | 37.037 | 0.00 | 0.00 | 0.00 | 4.96 |
256 | 258 | 7.603024 | GCATGACATTAGTATAAGTTACTCCCC | 59.397 | 40.741 | 0.00 | 0.00 | 0.00 | 4.81 |
257 | 259 | 8.148351 | TGCATGACATTAGTATAAGTTACTCCC | 58.852 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
258 | 260 | 9.712305 | ATGCATGACATTAGTATAAGTTACTCC | 57.288 | 33.333 | 0.00 | 0.00 | 34.40 | 3.85 |
263 | 265 | 9.193133 | GTCGTATGCATGACATTAGTATAAGTT | 57.807 | 33.333 | 10.16 | 0.00 | 39.98 | 2.66 |
264 | 266 | 8.357402 | TGTCGTATGCATGACATTAGTATAAGT | 58.643 | 33.333 | 14.14 | 0.00 | 44.08 | 2.24 |
265 | 267 | 8.742554 | TGTCGTATGCATGACATTAGTATAAG | 57.257 | 34.615 | 14.14 | 0.00 | 44.08 | 1.73 |
275 | 277 | 3.694566 | AGACTAGTGTCGTATGCATGACA | 59.305 | 43.478 | 14.14 | 14.14 | 46.20 | 3.58 |
287 | 289 | 8.558973 | TGAAGGTAGTAACTTAGACTAGTGTC | 57.441 | 38.462 | 0.00 | 0.00 | 43.22 | 3.67 |
292 | 294 | 9.118300 | GCACTATGAAGGTAGTAACTTAGACTA | 57.882 | 37.037 | 0.00 | 0.00 | 33.29 | 2.59 |
293 | 295 | 7.614583 | TGCACTATGAAGGTAGTAACTTAGACT | 59.385 | 37.037 | 0.00 | 0.00 | 33.29 | 3.24 |
294 | 296 | 7.701501 | GTGCACTATGAAGGTAGTAACTTAGAC | 59.298 | 40.741 | 10.32 | 0.00 | 33.29 | 2.59 |
295 | 297 | 7.147949 | GGTGCACTATGAAGGTAGTAACTTAGA | 60.148 | 40.741 | 17.98 | 0.00 | 33.29 | 2.10 |
296 | 298 | 6.979238 | GGTGCACTATGAAGGTAGTAACTTAG | 59.021 | 42.308 | 17.98 | 0.00 | 33.29 | 2.18 |
297 | 299 | 6.666546 | AGGTGCACTATGAAGGTAGTAACTTA | 59.333 | 38.462 | 17.98 | 0.00 | 33.29 | 2.24 |
298 | 300 | 5.484290 | AGGTGCACTATGAAGGTAGTAACTT | 59.516 | 40.000 | 17.98 | 0.00 | 33.29 | 2.66 |
299 | 301 | 5.024118 | AGGTGCACTATGAAGGTAGTAACT | 58.976 | 41.667 | 17.98 | 0.00 | 33.29 | 2.24 |
300 | 302 | 5.127356 | AGAGGTGCACTATGAAGGTAGTAAC | 59.873 | 44.000 | 17.98 | 0.00 | 33.29 | 2.50 |
301 | 303 | 5.269991 | AGAGGTGCACTATGAAGGTAGTAA | 58.730 | 41.667 | 17.98 | 0.00 | 33.29 | 2.24 |
302 | 304 | 4.868268 | AGAGGTGCACTATGAAGGTAGTA | 58.132 | 43.478 | 17.98 | 0.00 | 33.29 | 1.82 |
303 | 305 | 3.714144 | AGAGGTGCACTATGAAGGTAGT | 58.286 | 45.455 | 17.98 | 0.00 | 35.34 | 2.73 |
304 | 306 | 4.744795 | AAGAGGTGCACTATGAAGGTAG | 57.255 | 45.455 | 17.98 | 0.00 | 0.00 | 3.18 |
305 | 307 | 4.081087 | GGAAAGAGGTGCACTATGAAGGTA | 60.081 | 45.833 | 17.98 | 0.00 | 0.00 | 3.08 |
306 | 308 | 3.307762 | GGAAAGAGGTGCACTATGAAGGT | 60.308 | 47.826 | 17.98 | 0.00 | 0.00 | 3.50 |
307 | 309 | 3.054802 | AGGAAAGAGGTGCACTATGAAGG | 60.055 | 47.826 | 17.98 | 0.00 | 0.00 | 3.46 |
308 | 310 | 4.187694 | GAGGAAAGAGGTGCACTATGAAG | 58.812 | 47.826 | 17.98 | 0.00 | 0.00 | 3.02 |
309 | 311 | 3.582647 | TGAGGAAAGAGGTGCACTATGAA | 59.417 | 43.478 | 17.98 | 0.00 | 0.00 | 2.57 |
310 | 312 | 3.173151 | TGAGGAAAGAGGTGCACTATGA | 58.827 | 45.455 | 17.98 | 0.00 | 0.00 | 2.15 |
311 | 313 | 3.616956 | TGAGGAAAGAGGTGCACTATG | 57.383 | 47.619 | 17.98 | 0.00 | 0.00 | 2.23 |
312 | 314 | 4.851639 | AATGAGGAAAGAGGTGCACTAT | 57.148 | 40.909 | 17.98 | 5.74 | 0.00 | 2.12 |
313 | 315 | 5.755409 | TTAATGAGGAAAGAGGTGCACTA | 57.245 | 39.130 | 17.98 | 0.00 | 0.00 | 2.74 |
314 | 316 | 4.640771 | TTAATGAGGAAAGAGGTGCACT | 57.359 | 40.909 | 17.98 | 2.27 | 0.00 | 4.40 |
315 | 317 | 5.904362 | ATTTAATGAGGAAAGAGGTGCAC | 57.096 | 39.130 | 8.80 | 8.80 | 0.00 | 4.57 |
316 | 318 | 6.721318 | AGTATTTAATGAGGAAAGAGGTGCA | 58.279 | 36.000 | 0.00 | 0.00 | 0.00 | 4.57 |
317 | 319 | 7.475840 | CAAGTATTTAATGAGGAAAGAGGTGC | 58.524 | 38.462 | 0.00 | 0.00 | 0.00 | 5.01 |
318 | 320 | 7.415653 | GGCAAGTATTTAATGAGGAAAGAGGTG | 60.416 | 40.741 | 0.00 | 0.00 | 0.00 | 4.00 |
319 | 321 | 6.603599 | GGCAAGTATTTAATGAGGAAAGAGGT | 59.396 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
320 | 322 | 6.603201 | TGGCAAGTATTTAATGAGGAAAGAGG | 59.397 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
321 | 323 | 7.630242 | TGGCAAGTATTTAATGAGGAAAGAG | 57.370 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
322 | 324 | 9.866655 | ATATGGCAAGTATTTAATGAGGAAAGA | 57.133 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
339 | 341 | 9.520204 | CCAAGACAATTTTACTTATATGGCAAG | 57.480 | 33.333 | 0.00 | 0.00 | 0.00 | 4.01 |
340 | 342 | 8.474025 | CCCAAGACAATTTTACTTATATGGCAA | 58.526 | 33.333 | 0.00 | 0.00 | 0.00 | 4.52 |
341 | 343 | 7.836685 | TCCCAAGACAATTTTACTTATATGGCA | 59.163 | 33.333 | 0.00 | 0.00 | 0.00 | 4.92 |
342 | 344 | 8.232913 | TCCCAAGACAATTTTACTTATATGGC | 57.767 | 34.615 | 0.00 | 0.00 | 0.00 | 4.40 |
346 | 348 | 9.747898 | ACACATCCCAAGACAATTTTACTTATA | 57.252 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
347 | 349 | 8.650143 | ACACATCCCAAGACAATTTTACTTAT | 57.350 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
348 | 350 | 8.472007 | AACACATCCCAAGACAATTTTACTTA | 57.528 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
349 | 351 | 6.976934 | ACACATCCCAAGACAATTTTACTT | 57.023 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
350 | 352 | 6.976934 | AACACATCCCAAGACAATTTTACT | 57.023 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
351 | 353 | 9.705290 | ATTTAACACATCCCAAGACAATTTTAC | 57.295 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
354 | 356 | 9.705290 | GTAATTTAACACATCCCAAGACAATTT | 57.295 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
355 | 357 | 9.088987 | AGTAATTTAACACATCCCAAGACAATT | 57.911 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
356 | 358 | 8.650143 | AGTAATTTAACACATCCCAAGACAAT | 57.350 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
357 | 359 | 9.747898 | ATAGTAATTTAACACATCCCAAGACAA | 57.252 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
358 | 360 | 9.391006 | GATAGTAATTTAACACATCCCAAGACA | 57.609 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
359 | 361 | 9.614792 | AGATAGTAATTTAACACATCCCAAGAC | 57.385 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
377 | 379 | 9.359653 | GGTCATAGTGGGTAACTTAGATAGTAA | 57.640 | 37.037 | 0.00 | 0.00 | 40.56 | 2.24 |
378 | 380 | 8.730948 | AGGTCATAGTGGGTAACTTAGATAGTA | 58.269 | 37.037 | 0.00 | 0.00 | 40.56 | 1.82 |
379 | 381 | 7.593653 | AGGTCATAGTGGGTAACTTAGATAGT | 58.406 | 38.462 | 0.00 | 0.00 | 40.56 | 2.12 |
380 | 382 | 7.724506 | TGAGGTCATAGTGGGTAACTTAGATAG | 59.275 | 40.741 | 0.00 | 0.00 | 40.56 | 2.08 |
381 | 383 | 7.589081 | TGAGGTCATAGTGGGTAACTTAGATA | 58.411 | 38.462 | 0.00 | 0.00 | 40.56 | 1.98 |
382 | 384 | 6.441222 | TGAGGTCATAGTGGGTAACTTAGAT | 58.559 | 40.000 | 0.00 | 0.00 | 40.56 | 1.98 |
383 | 385 | 5.834460 | TGAGGTCATAGTGGGTAACTTAGA | 58.166 | 41.667 | 0.00 | 0.00 | 40.56 | 2.10 |
384 | 386 | 5.452077 | GCTGAGGTCATAGTGGGTAACTTAG | 60.452 | 48.000 | 0.00 | 0.00 | 40.56 | 2.18 |
385 | 387 | 4.404715 | GCTGAGGTCATAGTGGGTAACTTA | 59.595 | 45.833 | 0.00 | 0.00 | 40.56 | 2.24 |
386 | 388 | 3.197983 | GCTGAGGTCATAGTGGGTAACTT | 59.802 | 47.826 | 0.00 | 0.00 | 40.56 | 2.66 |
387 | 389 | 2.766828 | GCTGAGGTCATAGTGGGTAACT | 59.233 | 50.000 | 0.00 | 0.00 | 43.40 | 2.24 |
388 | 390 | 2.766828 | AGCTGAGGTCATAGTGGGTAAC | 59.233 | 50.000 | 0.00 | 0.00 | 0.00 | 2.50 |
389 | 391 | 2.766263 | CAGCTGAGGTCATAGTGGGTAA | 59.234 | 50.000 | 8.42 | 0.00 | 0.00 | 2.85 |
390 | 392 | 2.388735 | CAGCTGAGGTCATAGTGGGTA | 58.611 | 52.381 | 8.42 | 0.00 | 0.00 | 3.69 |
391 | 393 | 1.198713 | CAGCTGAGGTCATAGTGGGT | 58.801 | 55.000 | 8.42 | 0.00 | 0.00 | 4.51 |
392 | 394 | 0.179062 | GCAGCTGAGGTCATAGTGGG | 60.179 | 60.000 | 20.43 | 0.00 | 0.00 | 4.61 |
393 | 395 | 0.829333 | AGCAGCTGAGGTCATAGTGG | 59.171 | 55.000 | 20.43 | 0.00 | 0.00 | 4.00 |
394 | 396 | 1.535649 | CGAGCAGCTGAGGTCATAGTG | 60.536 | 57.143 | 20.43 | 0.00 | 35.83 | 2.74 |
395 | 397 | 0.743688 | CGAGCAGCTGAGGTCATAGT | 59.256 | 55.000 | 20.43 | 0.00 | 35.83 | 2.12 |
396 | 398 | 0.743688 | ACGAGCAGCTGAGGTCATAG | 59.256 | 55.000 | 20.43 | 1.45 | 35.83 | 2.23 |
397 | 399 | 2.052782 | TACGAGCAGCTGAGGTCATA | 57.947 | 50.000 | 20.43 | 0.00 | 35.83 | 2.15 |
398 | 400 | 1.339610 | GATACGAGCAGCTGAGGTCAT | 59.660 | 52.381 | 20.43 | 3.94 | 35.83 | 3.06 |
399 | 401 | 0.741326 | GATACGAGCAGCTGAGGTCA | 59.259 | 55.000 | 20.43 | 0.00 | 35.83 | 4.02 |
400 | 402 | 0.317436 | CGATACGAGCAGCTGAGGTC | 60.317 | 60.000 | 20.43 | 9.48 | 0.00 | 3.85 |
401 | 403 | 1.032657 | ACGATACGAGCAGCTGAGGT | 61.033 | 55.000 | 20.43 | 13.63 | 0.00 | 3.85 |
470 | 472 | 3.005539 | GCAGGCAGGGGAGTGAGA | 61.006 | 66.667 | 0.00 | 0.00 | 0.00 | 3.27 |
496 | 498 | 4.821589 | GCCCTTGGTCGAGCTCGG | 62.822 | 72.222 | 33.98 | 18.24 | 40.29 | 4.63 |
644 | 646 | 2.676748 | GAGGAGAGAGTGGATGTGGAT | 58.323 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
645 | 647 | 1.342474 | GGAGGAGAGAGTGGATGTGGA | 60.342 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
646 | 648 | 1.118838 | GGAGGAGAGAGTGGATGTGG | 58.881 | 60.000 | 0.00 | 0.00 | 0.00 | 4.17 |
647 | 649 | 1.118838 | GGGAGGAGAGAGTGGATGTG | 58.881 | 60.000 | 0.00 | 0.00 | 0.00 | 3.21 |
648 | 650 | 0.712979 | TGGGAGGAGAGAGTGGATGT | 59.287 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
649 | 651 | 1.118838 | GTGGGAGGAGAGAGTGGATG | 58.881 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1012 | 1036 | 1.078848 | GTCTTGGAGCCATGACGCT | 60.079 | 57.895 | 16.63 | 0.00 | 43.42 | 5.07 |
1250 | 1278 | 2.122167 | GGAGAGATCACGACCGGCT | 61.122 | 63.158 | 0.00 | 0.00 | 0.00 | 5.52 |
1722 | 1767 | 8.719648 | CAAGAAACATCAAGATAGCTATCCATC | 58.280 | 37.037 | 26.65 | 14.32 | 33.17 | 3.51 |
1821 | 1870 | 4.718940 | AGCCGATTCAAATTTGGTTAGG | 57.281 | 40.909 | 17.90 | 16.05 | 0.00 | 2.69 |
1836 | 1885 | 4.276431 | TGGTAAGTTTTTCGAAAAGCCGAT | 59.724 | 37.500 | 27.25 | 18.54 | 38.45 | 4.18 |
1842 | 1891 | 4.641094 | TGAGCCTGGTAAGTTTTTCGAAAA | 59.359 | 37.500 | 19.08 | 19.08 | 0.00 | 2.29 |
1847 | 1896 | 4.822350 | ACTTCTGAGCCTGGTAAGTTTTTC | 59.178 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
1881 | 1930 | 1.305633 | TCTGAGCTGAGGGTCCTGG | 60.306 | 63.158 | 0.00 | 0.00 | 39.02 | 4.45 |
1883 | 1932 | 0.636101 | ATCTCTGAGCTGAGGGTCCT | 59.364 | 55.000 | 0.00 | 0.00 | 39.02 | 3.85 |
1903 | 1952 | 1.497223 | GCAATAGCTCTCCGCAGCAG | 61.497 | 60.000 | 0.00 | 0.00 | 42.40 | 4.24 |
1923 | 1972 | 3.133183 | GGTAACCTGGAATGACTCTCTCC | 59.867 | 52.174 | 0.00 | 0.00 | 0.00 | 3.71 |
1936 | 1985 | 1.447314 | GGAAGTCGCGGTAACCTGG | 60.447 | 63.158 | 6.13 | 0.00 | 0.00 | 4.45 |
2143 | 4616 | 6.460781 | ACGGAATTCAGTATACAACTTCACA | 58.539 | 36.000 | 9.65 | 0.00 | 35.76 | 3.58 |
2229 | 4722 | 4.220693 | TCCGTCATTCAATCAGGACATT | 57.779 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
2242 | 4735 | 6.823689 | AGCAGAATACAAAAGTATCCGTCATT | 59.176 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2249 | 4742 | 8.213518 | TGATGGAAGCAGAATACAAAAGTATC | 57.786 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
2273 | 4773 | 7.730226 | GTCTATGGACGAAATTGACATGGAATG | 60.730 | 40.741 | 0.00 | 0.00 | 40.62 | 2.67 |
2274 | 4774 | 6.260936 | GTCTATGGACGAAATTGACATGGAAT | 59.739 | 38.462 | 0.00 | 0.00 | 32.19 | 3.01 |
2275 | 4775 | 5.584649 | GTCTATGGACGAAATTGACATGGAA | 59.415 | 40.000 | 0.00 | 0.00 | 32.19 | 3.53 |
2276 | 4776 | 5.104941 | AGTCTATGGACGAAATTGACATGGA | 60.105 | 40.000 | 3.29 | 0.00 | 46.29 | 3.41 |
2277 | 4777 | 5.118990 | AGTCTATGGACGAAATTGACATGG | 58.881 | 41.667 | 3.29 | 0.00 | 46.29 | 3.66 |
2278 | 4778 | 6.238211 | GGAAGTCTATGGACGAAATTGACATG | 60.238 | 42.308 | 3.29 | 0.00 | 46.29 | 3.21 |
2279 | 4779 | 5.817816 | GGAAGTCTATGGACGAAATTGACAT | 59.182 | 40.000 | 3.29 | 0.00 | 46.29 | 3.06 |
2280 | 4780 | 5.046591 | AGGAAGTCTATGGACGAAATTGACA | 60.047 | 40.000 | 3.29 | 0.00 | 46.29 | 3.58 |
2290 | 4790 | 8.884726 | GTTTTCTATTTGAGGAAGTCTATGGAC | 58.115 | 37.037 | 0.00 | 0.00 | 42.41 | 4.02 |
2292 | 4792 | 8.669243 | GTGTTTTCTATTTGAGGAAGTCTATGG | 58.331 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
2293 | 4793 | 9.442047 | AGTGTTTTCTATTTGAGGAAGTCTATG | 57.558 | 33.333 | 0.00 | 0.00 | 0.00 | 2.23 |
2294 | 4794 | 9.660180 | GAGTGTTTTCTATTTGAGGAAGTCTAT | 57.340 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
2307 | 4809 | 9.646427 | GTCAGTTCTCTATGAGTGTTTTCTATT | 57.354 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
2308 | 4810 | 8.807118 | TGTCAGTTCTCTATGAGTGTTTTCTAT | 58.193 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
2309 | 4811 | 8.178313 | TGTCAGTTCTCTATGAGTGTTTTCTA | 57.822 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
2310 | 4812 | 7.055667 | TGTCAGTTCTCTATGAGTGTTTTCT | 57.944 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2311 | 4813 | 7.623089 | GCATGTCAGTTCTCTATGAGTGTTTTC | 60.623 | 40.741 | 0.00 | 0.00 | 0.00 | 2.29 |
2312 | 4814 | 6.148480 | GCATGTCAGTTCTCTATGAGTGTTTT | 59.852 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
2313 | 4815 | 5.641209 | GCATGTCAGTTCTCTATGAGTGTTT | 59.359 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2314 | 4816 | 5.046735 | AGCATGTCAGTTCTCTATGAGTGTT | 60.047 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2315 | 4817 | 4.465660 | AGCATGTCAGTTCTCTATGAGTGT | 59.534 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
2316 | 4818 | 5.008619 | AGCATGTCAGTTCTCTATGAGTG | 57.991 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
2317 | 4819 | 5.674052 | AAGCATGTCAGTTCTCTATGAGT | 57.326 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
2318 | 4820 | 6.804677 | ACTAAGCATGTCAGTTCTCTATGAG | 58.195 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2319 | 4821 | 6.782082 | ACTAAGCATGTCAGTTCTCTATGA | 57.218 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
2320 | 4822 | 7.547019 | TGAAACTAAGCATGTCAGTTCTCTATG | 59.453 | 37.037 | 8.52 | 0.00 | 31.43 | 2.23 |
2321 | 4823 | 7.615403 | TGAAACTAAGCATGTCAGTTCTCTAT | 58.385 | 34.615 | 8.52 | 0.00 | 31.43 | 1.98 |
2322 | 4824 | 6.993079 | TGAAACTAAGCATGTCAGTTCTCTA | 58.007 | 36.000 | 8.52 | 0.00 | 31.43 | 2.43 |
2323 | 4825 | 5.858381 | TGAAACTAAGCATGTCAGTTCTCT | 58.142 | 37.500 | 8.52 | 0.00 | 31.43 | 3.10 |
2326 | 4828 | 6.305693 | ACTTGAAACTAAGCATGTCAGTTC | 57.694 | 37.500 | 8.52 | 0.94 | 31.43 | 3.01 |
2329 | 4831 | 5.400485 | GCAAACTTGAAACTAAGCATGTCAG | 59.600 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2346 | 4848 | 5.356751 | TGTGTAGAGAATGTTGTGCAAACTT | 59.643 | 36.000 | 11.34 | 4.59 | 0.00 | 2.66 |
2352 | 4854 | 5.696724 | AGTAAGTGTGTAGAGAATGTTGTGC | 59.303 | 40.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2364 | 4866 | 9.347934 | CTGAACTAGATGAAAGTAAGTGTGTAG | 57.652 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
2424 | 4927 | 5.221224 | TGTCCATCCATTGTTCTGTCAAAAC | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2427 | 4930 | 4.074259 | CTGTCCATCCATTGTTCTGTCAA | 58.926 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
2528 | 5300 | 2.284190 | GTGGAGAAGAGCTGGTTATGC | 58.716 | 52.381 | 0.00 | 0.00 | 0.00 | 3.14 |
2529 | 5301 | 2.237143 | TGGTGGAGAAGAGCTGGTTATG | 59.763 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2534 | 5306 | 1.078567 | GCTGGTGGAGAAGAGCTGG | 60.079 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
2560 | 5682 | 2.771089 | GTGCTTCACCTGATGAGACAA | 58.229 | 47.619 | 0.00 | 0.00 | 38.99 | 3.18 |
2593 | 5715 | 7.991084 | TTCTTGACTGATTGATTGTTGATCT | 57.009 | 32.000 | 0.00 | 0.00 | 35.69 | 2.75 |
2681 | 5803 | 3.046390 | CACGTATTTCGATGAGGCTCTC | 58.954 | 50.000 | 16.72 | 9.65 | 42.86 | 3.20 |
2691 | 5813 | 2.009051 | TCGCTAGGACACGTATTTCGA | 58.991 | 47.619 | 0.00 | 0.00 | 42.86 | 3.71 |
2712 | 5834 | 8.504005 | ACTTGTTTTACTTCATACTCGAAATGG | 58.496 | 33.333 | 7.39 | 0.00 | 0.00 | 3.16 |
2714 | 5836 | 8.504005 | CCACTTGTTTTACTTCATACTCGAAAT | 58.496 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2722 | 5844 | 8.344098 | CCGTTTTACCACTTGTTTTACTTCATA | 58.656 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
2729 | 5851 | 3.698040 | TGGCCGTTTTACCACTTGTTTTA | 59.302 | 39.130 | 0.00 | 0.00 | 0.00 | 1.52 |
2731 | 5853 | 2.100989 | TGGCCGTTTTACCACTTGTTT | 58.899 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
2739 | 5926 | 1.609555 | TGAACATGTGGCCGTTTTACC | 59.390 | 47.619 | 0.00 | 0.00 | 0.00 | 2.85 |
2758 | 5945 | 1.593196 | TTTGCCTGTCCGAAGTTCTG | 58.407 | 50.000 | 0.56 | 0.00 | 0.00 | 3.02 |
2792 | 5979 | 7.160457 | TCCAGATTCCCCATACATATTTTGA | 57.840 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2824 | 6017 | 0.460284 | CAGTGAGTGACCCATACCGC | 60.460 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
2825 | 6018 | 0.895530 | ACAGTGAGTGACCCATACCG | 59.104 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2949 | 6143 | 6.304356 | TCTTCAGTGCAAATCTTGTTACAG | 57.696 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
2961 | 6155 | 1.066002 | GCTGCAACTTCTTCAGTGCAA | 59.934 | 47.619 | 0.00 | 0.00 | 38.36 | 4.08 |
2997 | 6191 | 0.398696 | TTGGGCCTTCTTCGCTGTTA | 59.601 | 50.000 | 4.53 | 0.00 | 0.00 | 2.41 |
2999 | 6193 | 1.302832 | CTTGGGCCTTCTTCGCTGT | 60.303 | 57.895 | 4.53 | 0.00 | 0.00 | 4.40 |
3004 | 6198 | 2.306847 | TGTTCAACTTGGGCCTTCTTC | 58.693 | 47.619 | 4.53 | 0.00 | 0.00 | 2.87 |
3028 | 6222 | 0.795085 | CTTTGCTCTGCTCGTTCTGG | 59.205 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.