Multiple sequence alignment - TraesCS2A01G540300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G540300 chr2A 100.000 3238 0 0 1 3238 752299276 752296039 0.000000e+00 5980.0
1 TraesCS2A01G540300 chr2A 95.116 430 15 3 2811 3238 81144498 81144073 0.000000e+00 673.0
2 TraesCS2A01G540300 chr2A 80.848 637 118 2 1626 2262 751371570 751372202 6.240000e-137 497.0
3 TraesCS2A01G540300 chr2A 81.230 618 101 10 1620 2228 752395196 752395807 4.860000e-133 484.0
4 TraesCS2A01G540300 chr2A 98.942 189 2 0 1 189 712710152 712709964 4.000000e-89 339.0
5 TraesCS2A01G540300 chr2A 98.421 190 3 0 1 190 51544841 51544652 5.180000e-88 335.0
6 TraesCS2A01G540300 chr2A 78.862 246 12 17 1052 1271 751252588 751252819 2.620000e-26 130.0
7 TraesCS2A01G540300 chr2A 78.862 246 12 17 1052 1271 751274674 751274905 2.620000e-26 130.0
8 TraesCS2A01G540300 chr2D 92.867 2089 115 14 726 2792 620641331 620639255 0.000000e+00 3001.0
9 TraesCS2A01G540300 chr2D 81.289 636 103 11 1620 2246 620742757 620743385 4.820000e-138 501.0
10 TraesCS2A01G540300 chr2D 78.378 629 121 11 1645 2262 620812270 620812894 8.420000e-106 394.0
11 TraesCS2A01G540300 chr2D 83.819 309 24 11 832 1133 620581013 620580724 1.480000e-68 270.0
12 TraesCS2A01G540300 chr2D 80.418 383 42 22 900 1269 620826693 620827055 8.910000e-66 261.0
13 TraesCS2A01G540300 chr2D 78.378 481 39 28 830 1271 619705389 619705843 5.360000e-63 252.0
14 TraesCS2A01G540300 chr2D 78.904 365 67 9 1930 2290 619706918 619707276 4.180000e-59 239.0
15 TraesCS2A01G540300 chr2D 93.548 62 1 3 666 727 422547646 422547588 4.450000e-14 89.8
16 TraesCS2A01G540300 chr2D 91.228 57 5 0 2415 2471 633385370 633385314 9.630000e-11 78.7
17 TraesCS2A01G540300 chr2D 91.071 56 3 2 2415 2469 57100140 57100086 1.250000e-09 75.0
18 TraesCS2A01G540300 chr2D 83.951 81 8 3 1193 1269 620580643 620580564 4.480000e-09 73.1
19 TraesCS2A01G540300 chr3A 96.507 544 13 3 185 727 147284994 147284456 0.000000e+00 894.0
20 TraesCS2A01G540300 chr3A 94.614 427 13 3 2817 3238 679743899 679743478 0.000000e+00 652.0
21 TraesCS2A01G540300 chr5A 95.396 543 14 3 185 726 602194027 602194559 0.000000e+00 854.0
22 TraesCS2A01G540300 chr5A 95.018 542 16 2 185 725 338440390 338440921 0.000000e+00 841.0
23 TraesCS2A01G540300 chr5A 94.518 529 17 4 207 734 618477323 618476806 0.000000e+00 806.0
24 TraesCS2A01G540300 chr5A 90.257 544 39 4 186 727 554683358 554682827 0.000000e+00 699.0
25 TraesCS2A01G540300 chr5A 92.734 289 10 2 439 726 413201154 413200876 1.080000e-109 407.0
26 TraesCS2A01G540300 chr5A 98.942 189 2 0 1 189 638527787 638527975 4.000000e-89 339.0
27 TraesCS2A01G540300 chr4A 95.093 428 15 1 2817 3238 744465741 744466168 0.000000e+00 669.0
28 TraesCS2A01G540300 chr4A 98.429 191 2 1 1 190 571078824 571079014 5.180000e-88 335.0
29 TraesCS2A01G540300 chr4A 88.525 61 4 3 667 727 591513144 591513087 1.610000e-08 71.3
30 TraesCS2A01G540300 chr4A 88.525 61 4 3 667 727 592531166 592531223 1.610000e-08 71.3
31 TraesCS2A01G540300 chr5D 94.614 427 17 1 2818 3238 12869766 12870192 0.000000e+00 656.0
32 TraesCS2A01G540300 chr5D 94.563 423 17 2 2818 3238 481572090 481572508 0.000000e+00 649.0
33 TraesCS2A01G540300 chrUn 94.601 426 18 3 2818 3238 440248299 440247874 0.000000e+00 654.0
34 TraesCS2A01G540300 chrUn 94.231 52 3 0 2415 2466 30337752 30337701 2.680000e-11 80.5
35 TraesCS2A01G540300 chr7B 94.601 426 18 3 2818 3238 669210367 669210792 0.000000e+00 654.0
36 TraesCS2A01G540300 chr7B 94.601 426 18 3 2818 3238 669277492 669277917 0.000000e+00 654.0
37 TraesCS2A01G540300 chr7B 89.394 66 3 4 663 727 711652232 711652294 2.680000e-11 80.5
38 TraesCS2A01G540300 chr7B 87.500 64 4 4 2424 2486 84131811 84131751 1.610000e-08 71.3
39 TraesCS2A01G540300 chr3D 94.563 423 17 3 2817 3238 118033310 118032893 0.000000e+00 649.0
40 TraesCS2A01G540300 chr2B 80.645 651 111 10 1619 2262 759445391 759446033 1.040000e-134 490.0
41 TraesCS2A01G540300 chr2B 78.924 688 115 20 1618 2289 761718755 761719428 1.070000e-119 440.0
42 TraesCS2A01G540300 chr7A 98.429 191 2 1 1 191 677127640 677127829 5.180000e-88 335.0
43 TraesCS2A01G540300 chr7A 98.413 189 3 0 1 189 166322602 166322790 1.860000e-87 333.0
44 TraesCS2A01G540300 chr7A 89.474 57 5 1 2424 2479 126057725 126057781 1.610000e-08 71.3
45 TraesCS2A01G540300 chr6D 97.917 192 4 0 1 192 52875244 52875053 1.860000e-87 333.0
46 TraesCS2A01G540300 chr1A 98.413 189 3 0 1 189 324894048 324894236 1.860000e-87 333.0
47 TraesCS2A01G540300 chr6A 98.387 186 3 0 1 186 150811754 150811939 8.660000e-86 327.0
48 TraesCS2A01G540300 chr3B 78.862 246 12 17 1052 1271 713760384 713760153 2.620000e-26 130.0
49 TraesCS2A01G540300 chr7D 88.235 85 10 0 731 815 381154537 381154621 5.720000e-18 102.0
50 TraesCS2A01G540300 chr7D 89.552 67 5 1 2415 2479 557074669 557074735 2.070000e-12 84.2
51 TraesCS2A01G540300 chr7D 86.301 73 5 5 2416 2487 47425925 47425993 1.250000e-09 75.0
52 TraesCS2A01G540300 chr4D 92.727 55 4 0 2415 2469 493021610 493021556 2.680000e-11 80.5
53 TraesCS2A01G540300 chr4B 90.164 61 3 3 667 727 20366198 20366141 3.460000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G540300 chr2A 752296039 752299276 3237 True 5980.0 5980 100.000 1 3238 1 chr2A.!!$R4 3237
1 TraesCS2A01G540300 chr2A 751371570 751372202 632 False 497.0 497 80.848 1626 2262 1 chr2A.!!$F3 636
2 TraesCS2A01G540300 chr2A 752395196 752395807 611 False 484.0 484 81.230 1620 2228 1 chr2A.!!$F4 608
3 TraesCS2A01G540300 chr2D 620639255 620641331 2076 True 3001.0 3001 92.867 726 2792 1 chr2D.!!$R3 2066
4 TraesCS2A01G540300 chr2D 620742757 620743385 628 False 501.0 501 81.289 1620 2246 1 chr2D.!!$F1 626
5 TraesCS2A01G540300 chr2D 620812270 620812894 624 False 394.0 394 78.378 1645 2262 1 chr2D.!!$F2 617
6 TraesCS2A01G540300 chr2D 619705389 619707276 1887 False 245.5 252 78.641 830 2290 2 chr2D.!!$F4 1460
7 TraesCS2A01G540300 chr3A 147284456 147284994 538 True 894.0 894 96.507 185 727 1 chr3A.!!$R1 542
8 TraesCS2A01G540300 chr5A 602194027 602194559 532 False 854.0 854 95.396 185 726 1 chr5A.!!$F2 541
9 TraesCS2A01G540300 chr5A 338440390 338440921 531 False 841.0 841 95.018 185 725 1 chr5A.!!$F1 540
10 TraesCS2A01G540300 chr5A 618476806 618477323 517 True 806.0 806 94.518 207 734 1 chr5A.!!$R3 527
11 TraesCS2A01G540300 chr5A 554682827 554683358 531 True 699.0 699 90.257 186 727 1 chr5A.!!$R2 541
12 TraesCS2A01G540300 chr2B 759445391 759446033 642 False 490.0 490 80.645 1619 2262 1 chr2B.!!$F1 643
13 TraesCS2A01G540300 chr2B 761718755 761719428 673 False 440.0 440 78.924 1618 2289 1 chr2B.!!$F2 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 304 0.313987 GCAAAGGAGGTTTGGTTCCG 59.686 55.000 0.04 0.0 45.1 4.30 F
1419 1479 1.154263 CGTCGTCTCTCCGGTTGTC 60.154 63.158 0.00 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 1695 0.032403 GCTGCCTGTGACAAATGCAA 59.968 50.0 0.00 0.0 0.00 4.08 R
3214 3745 0.037975 GAGGAGTTCGCACCGGTTTA 60.038 55.0 2.97 0.0 32.82 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.777802 CCATCTATTGATCAACGAGCTAGT 58.222 41.667 11.07 0.00 0.00 2.57
24 25 5.861251 CCATCTATTGATCAACGAGCTAGTC 59.139 44.000 11.07 0.00 0.00 2.59
25 26 6.442112 CATCTATTGATCAACGAGCTAGTCA 58.558 40.000 11.07 0.00 0.00 3.41
26 27 6.451064 TCTATTGATCAACGAGCTAGTCAA 57.549 37.500 11.07 0.55 0.00 3.18
27 28 6.266323 TCTATTGATCAACGAGCTAGTCAAC 58.734 40.000 11.07 0.00 0.00 3.18
28 29 4.521130 TTGATCAACGAGCTAGTCAACT 57.479 40.909 3.38 0.00 0.00 3.16
29 30 5.638596 TTGATCAACGAGCTAGTCAACTA 57.361 39.130 3.38 0.00 0.00 2.24
30 31 5.236655 TGATCAACGAGCTAGTCAACTAG 57.763 43.478 11.99 11.99 46.63 2.57
31 32 4.941873 TGATCAACGAGCTAGTCAACTAGA 59.058 41.667 19.03 0.00 46.80 2.43
32 33 4.948608 TCAACGAGCTAGTCAACTAGAG 57.051 45.455 19.03 11.89 46.80 2.43
33 34 3.690139 TCAACGAGCTAGTCAACTAGAGG 59.310 47.826 19.03 10.05 46.80 3.69
34 35 2.018515 ACGAGCTAGTCAACTAGAGGC 58.981 52.381 19.03 6.58 46.80 4.70
35 36 2.294074 CGAGCTAGTCAACTAGAGGCT 58.706 52.381 19.03 10.84 46.80 4.58
36 37 2.685897 CGAGCTAGTCAACTAGAGGCTT 59.314 50.000 19.03 1.20 46.80 4.35
37 38 3.878103 CGAGCTAGTCAACTAGAGGCTTA 59.122 47.826 19.03 0.00 46.80 3.09
38 39 4.260866 CGAGCTAGTCAACTAGAGGCTTAC 60.261 50.000 19.03 1.96 46.80 2.34
39 40 4.862371 AGCTAGTCAACTAGAGGCTTACT 58.138 43.478 19.03 3.99 46.80 2.24
40 41 6.003859 AGCTAGTCAACTAGAGGCTTACTA 57.996 41.667 19.03 0.00 46.80 1.82
41 42 6.059484 AGCTAGTCAACTAGAGGCTTACTAG 58.941 44.000 19.03 8.32 46.80 2.57
42 43 5.239963 GCTAGTCAACTAGAGGCTTACTAGG 59.760 48.000 19.03 0.00 46.80 3.02
43 44 4.538738 AGTCAACTAGAGGCTTACTAGGG 58.461 47.826 13.13 6.54 40.86 3.53
44 45 4.230041 AGTCAACTAGAGGCTTACTAGGGA 59.770 45.833 13.13 8.30 40.86 4.20
45 46 4.338964 GTCAACTAGAGGCTTACTAGGGAC 59.661 50.000 13.13 14.30 40.86 4.46
46 47 4.017775 TCAACTAGAGGCTTACTAGGGACA 60.018 45.833 13.13 0.00 40.86 4.02
47 48 4.817874 ACTAGAGGCTTACTAGGGACAT 57.182 45.455 13.13 0.00 40.86 3.06
48 49 4.475345 ACTAGAGGCTTACTAGGGACATG 58.525 47.826 13.13 0.00 40.86 3.21
49 50 2.683768 AGAGGCTTACTAGGGACATGG 58.316 52.381 0.00 0.00 0.00 3.66
50 51 2.022918 AGAGGCTTACTAGGGACATGGT 60.023 50.000 0.00 0.00 0.00 3.55
51 52 2.103263 GAGGCTTACTAGGGACATGGTG 59.897 54.545 0.00 0.00 0.00 4.17
52 53 1.838077 GGCTTACTAGGGACATGGTGT 59.162 52.381 0.00 0.00 0.00 4.16
53 54 2.238898 GGCTTACTAGGGACATGGTGTT 59.761 50.000 0.00 0.00 0.00 3.32
54 55 3.270877 GCTTACTAGGGACATGGTGTTG 58.729 50.000 0.00 0.00 0.00 3.33
55 56 3.307480 GCTTACTAGGGACATGGTGTTGT 60.307 47.826 0.00 0.00 0.00 3.32
56 57 4.504858 CTTACTAGGGACATGGTGTTGTC 58.495 47.826 0.00 0.00 44.27 3.18
57 58 2.621070 ACTAGGGACATGGTGTTGTCT 58.379 47.619 0.00 0.00 44.39 3.41
58 59 3.786553 ACTAGGGACATGGTGTTGTCTA 58.213 45.455 0.00 0.00 44.39 2.59
59 60 4.362677 ACTAGGGACATGGTGTTGTCTAT 58.637 43.478 0.00 0.00 44.39 1.98
60 61 3.634397 AGGGACATGGTGTTGTCTATG 57.366 47.619 0.00 0.00 44.39 2.23
61 62 3.181329 AGGGACATGGTGTTGTCTATGA 58.819 45.455 0.00 0.00 44.39 2.15
62 63 3.782523 AGGGACATGGTGTTGTCTATGAT 59.217 43.478 0.00 0.00 44.39 2.45
63 64 4.228210 AGGGACATGGTGTTGTCTATGATT 59.772 41.667 0.00 0.00 44.39 2.57
64 65 4.576463 GGGACATGGTGTTGTCTATGATTC 59.424 45.833 0.00 0.00 44.39 2.52
65 66 4.576463 GGACATGGTGTTGTCTATGATTCC 59.424 45.833 0.00 0.00 44.39 3.01
66 67 5.178096 ACATGGTGTTGTCTATGATTCCA 57.822 39.130 0.00 0.00 0.00 3.53
67 68 4.943705 ACATGGTGTTGTCTATGATTCCAC 59.056 41.667 0.00 0.00 0.00 4.02
68 69 4.632327 TGGTGTTGTCTATGATTCCACA 57.368 40.909 0.00 0.00 0.00 4.17
69 70 4.323417 TGGTGTTGTCTATGATTCCACAC 58.677 43.478 0.00 0.00 0.00 3.82
70 71 4.202409 TGGTGTTGTCTATGATTCCACACA 60.202 41.667 0.00 0.00 0.00 3.72
71 72 4.943705 GGTGTTGTCTATGATTCCACACAT 59.056 41.667 0.00 0.00 0.00 3.21
72 73 5.163723 GGTGTTGTCTATGATTCCACACATG 60.164 44.000 0.00 0.00 0.00 3.21
73 74 5.412594 GTGTTGTCTATGATTCCACACATGT 59.587 40.000 0.00 0.00 0.00 3.21
74 75 6.593770 GTGTTGTCTATGATTCCACACATGTA 59.406 38.462 0.00 0.00 0.00 2.29
75 76 7.280876 GTGTTGTCTATGATTCCACACATGTAT 59.719 37.037 0.00 0.00 0.00 2.29
76 77 7.495606 TGTTGTCTATGATTCCACACATGTATC 59.504 37.037 0.00 0.00 0.00 2.24
77 78 7.365497 TGTCTATGATTCCACACATGTATCT 57.635 36.000 0.00 0.00 0.00 1.98
78 79 7.212274 TGTCTATGATTCCACACATGTATCTG 58.788 38.462 0.00 0.00 0.00 2.90
79 80 7.069826 TGTCTATGATTCCACACATGTATCTGA 59.930 37.037 0.00 0.00 0.00 3.27
80 81 7.598118 GTCTATGATTCCACACATGTATCTGAG 59.402 40.741 0.00 0.21 0.00 3.35
81 82 5.682234 TGATTCCACACATGTATCTGAGT 57.318 39.130 0.00 0.00 0.00 3.41
82 83 6.053632 TGATTCCACACATGTATCTGAGTT 57.946 37.500 0.00 0.00 0.00 3.01
83 84 6.475504 TGATTCCACACATGTATCTGAGTTT 58.524 36.000 0.00 0.00 0.00 2.66
84 85 6.595326 TGATTCCACACATGTATCTGAGTTTC 59.405 38.462 0.00 0.00 0.00 2.78
85 86 4.832248 TCCACACATGTATCTGAGTTTCC 58.168 43.478 0.00 0.00 0.00 3.13
86 87 4.532126 TCCACACATGTATCTGAGTTTCCT 59.468 41.667 0.00 0.00 0.00 3.36
87 88 5.719563 TCCACACATGTATCTGAGTTTCCTA 59.280 40.000 0.00 0.00 0.00 2.94
88 89 6.384015 TCCACACATGTATCTGAGTTTCCTAT 59.616 38.462 0.00 0.00 0.00 2.57
89 90 6.703607 CCACACATGTATCTGAGTTTCCTATC 59.296 42.308 0.00 0.00 0.00 2.08
90 91 7.267857 CACACATGTATCTGAGTTTCCTATCA 58.732 38.462 0.00 0.00 0.00 2.15
91 92 7.765819 CACACATGTATCTGAGTTTCCTATCAA 59.234 37.037 0.00 0.00 0.00 2.57
92 93 8.489489 ACACATGTATCTGAGTTTCCTATCAAT 58.511 33.333 0.00 0.00 0.00 2.57
93 94 9.987272 CACATGTATCTGAGTTTCCTATCAATA 57.013 33.333 0.00 0.00 0.00 1.90
94 95 9.988815 ACATGTATCTGAGTTTCCTATCAATAC 57.011 33.333 0.00 0.00 0.00 1.89
95 96 9.987272 CATGTATCTGAGTTTCCTATCAATACA 57.013 33.333 0.00 0.00 35.88 2.29
103 104 9.547753 TGAGTTTCCTATCAATACAATTCTAGC 57.452 33.333 0.00 0.00 0.00 3.42
104 105 9.547753 GAGTTTCCTATCAATACAATTCTAGCA 57.452 33.333 0.00 0.00 0.00 3.49
107 108 8.853077 TTCCTATCAATACAATTCTAGCATGG 57.147 34.615 0.00 0.00 0.00 3.66
108 109 8.206126 TCCTATCAATACAATTCTAGCATGGA 57.794 34.615 0.00 0.00 0.00 3.41
109 110 8.829746 TCCTATCAATACAATTCTAGCATGGAT 58.170 33.333 0.00 0.00 0.00 3.41
118 119 8.902540 ACAATTCTAGCATGGATAATAAACGA 57.097 30.769 0.00 0.00 0.00 3.85
119 120 9.507329 ACAATTCTAGCATGGATAATAAACGAT 57.493 29.630 0.00 0.00 0.00 3.73
183 184 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33
303 304 0.313987 GCAAAGGAGGTTTGGTTCCG 59.686 55.000 0.04 0.00 45.10 4.30
586 587 8.982723 ACCACTGTAGTATAGATGTGAGATTTT 58.017 33.333 0.28 0.00 0.00 1.82
589 590 9.201989 ACTGTAGTATAGATGTGAGATTTTCCA 57.798 33.333 0.28 0.00 0.00 3.53
822 828 4.929819 ATCAGCGGGTTGTTTTTAAACT 57.070 36.364 6.87 0.00 39.59 2.66
900 906 4.260170 GTCTGAGCATGAGTTGGATTTCT 58.740 43.478 0.00 0.00 0.00 2.52
901 907 4.094590 GTCTGAGCATGAGTTGGATTTCTG 59.905 45.833 0.00 0.00 0.00 3.02
926 934 1.241315 ATTCAAGTTCCGTTGGCCCG 61.241 55.000 0.00 0.00 0.00 6.13
948 959 5.511373 CCGCCACCTCATCTATATTCTTCAA 60.511 44.000 0.00 0.00 0.00 2.69
959 970 9.901172 CATCTATATTCTTCAATGGATCCATGA 57.099 33.333 27.97 21.91 36.68 3.07
966 977 2.636403 TCAATGGATCCATGATCGAGCT 59.364 45.455 27.97 6.74 39.72 4.09
969 980 1.547820 TGGATCCATGATCGAGCTAGC 59.452 52.381 11.44 6.62 39.72 3.42
1128 1148 2.377004 CGTACGTACGCCTCTCTCA 58.623 57.895 32.36 0.00 43.14 3.27
1130 1150 1.329906 CGTACGTACGCCTCTCTCAAT 59.670 52.381 32.36 0.00 43.14 2.57
1131 1151 2.223203 CGTACGTACGCCTCTCTCAATT 60.223 50.000 32.36 0.00 43.14 2.32
1132 1152 2.563471 ACGTACGCCTCTCTCAATTC 57.437 50.000 16.72 0.00 0.00 2.17
1133 1153 1.816835 ACGTACGCCTCTCTCAATTCA 59.183 47.619 16.72 0.00 0.00 2.57
1135 1155 3.119101 ACGTACGCCTCTCTCAATTCAAT 60.119 43.478 16.72 0.00 0.00 2.57
1141 1182 3.382865 GCCTCTCTCAATTCAATTTCCCC 59.617 47.826 0.00 0.00 0.00 4.81
1158 1199 1.376037 CCCTCTTTCAGCGTGGACC 60.376 63.158 0.00 0.00 0.00 4.46
1165 1206 3.349006 CAGCGTGGACCTGTGTGC 61.349 66.667 0.00 0.00 0.00 4.57
1177 1222 3.290710 ACCTGTGTGCTTGATGAAACTT 58.709 40.909 0.00 0.00 0.00 2.66
1311 1371 2.425668 GTCCGGATATGTTGGTTTTGGG 59.574 50.000 7.81 0.00 0.00 4.12
1355 1415 4.159135 GGCAGACAGGATTCAACATGATTT 59.841 41.667 0.00 0.00 0.00 2.17
1419 1479 1.154263 CGTCGTCTCTCCGGTTGTC 60.154 63.158 0.00 0.00 0.00 3.18
1445 1505 2.988570 ACAAAACGGTTGTGGTGAGTA 58.011 42.857 15.15 0.00 0.00 2.59
1471 1533 6.702282 ACTTGAGCTTAATTATTACTCTCCGC 59.298 38.462 0.00 0.00 0.00 5.54
1505 1571 7.422399 AGCGTGTGTTTTAAACTGATATGTTT 58.578 30.769 9.33 0.00 42.10 2.83
1527 1593 8.023128 TGTTTGTAGGAGTGTATCGTAGTTTAC 58.977 37.037 0.00 0.00 0.00 2.01
1595 1662 7.790673 CGAAAGCGTATTTTTACATATTAGCGT 59.209 33.333 0.00 0.00 0.00 5.07
1614 1685 3.738982 CGTATGCATGGATCCCTTACAA 58.261 45.455 10.16 0.00 0.00 2.41
1624 1695 3.071167 GGATCCCTTACAACGCCTAATCT 59.929 47.826 0.00 0.00 0.00 2.40
1680 1753 1.809209 GCAGCCTCAGTCGAAGCTC 60.809 63.158 0.00 0.00 36.78 4.09
1736 1810 1.751351 TCGGTTCAAGAGCTCATCGAT 59.249 47.619 17.77 0.00 0.00 3.59
1752 1826 3.560902 TCGATTGTGACACAGAGAGTC 57.439 47.619 8.55 3.28 36.55 3.36
1856 1931 2.160721 TGGCTCGGAGGAGTAAATCT 57.839 50.000 7.20 0.00 42.53 2.40
1992 2512 5.009010 ACTTTGCAGTTTTTCGATGATCTGT 59.991 36.000 0.00 0.00 0.00 3.41
2221 2746 5.243954 TCTTCATGGAACCAGGAGTATATCG 59.756 44.000 8.16 0.00 38.02 2.92
2268 2797 6.575244 TGGATGGTTGGATCTTTATAGTGT 57.425 37.500 0.00 0.00 0.00 3.55
2297 2827 9.884814 AGAATTGTATCACCTACCTAGATAGTT 57.115 33.333 0.00 0.00 0.00 2.24
2304 2834 7.348080 TCACCTACCTAGATAGTTTCATGTG 57.652 40.000 0.00 0.00 0.00 3.21
2366 2896 7.783090 TGTGTGATTGCATTTTACATTGTTT 57.217 28.000 0.00 0.00 0.00 2.83
2367 2897 8.206325 TGTGTGATTGCATTTTACATTGTTTT 57.794 26.923 0.00 0.00 0.00 2.43
2368 2898 9.317936 TGTGTGATTGCATTTTACATTGTTTTA 57.682 25.926 0.00 0.00 0.00 1.52
2410 2940 5.495640 CTTCTTTCATATCTAGATGGGCCC 58.504 45.833 17.59 17.59 0.00 5.80
2419 2949 3.521727 TCTAGATGGGCCCCTCTAATTC 58.478 50.000 30.00 12.46 0.00 2.17
2437 2967 8.193250 TCTAATTCTTATTACGTTTGAGGTGC 57.807 34.615 0.00 0.00 0.00 5.01
2441 2971 6.236017 TCTTATTACGTTTGAGGTGCTTTG 57.764 37.500 0.00 0.00 0.00 2.77
2451 2981 2.438021 TGAGGTGCTTTGTACTTCTGGT 59.562 45.455 0.00 0.00 0.00 4.00
2501 3031 9.314321 CTTTCTTCGCAGATACTAATTTTAGGA 57.686 33.333 2.63 0.00 35.04 2.94
2509 3039 7.041098 GCAGATACTAATTTTAGGACCCACATG 60.041 40.741 2.63 0.00 35.08 3.21
2522 3052 1.278985 CCCACATGTAAGGCACTCAGA 59.721 52.381 0.00 0.00 38.49 3.27
2525 3055 1.065854 ACATGTAAGGCACTCAGAGGC 60.066 52.381 0.00 2.39 38.49 4.70
2529 3059 0.615331 TAAGGCACTCAGAGGCAAGG 59.385 55.000 1.53 0.00 38.49 3.61
2545 3075 4.512961 GGCGGGTAACGGGTACGG 62.513 72.222 0.00 0.00 46.48 4.02
2561 3091 5.450137 CGGGTACGGGTAATGATATCTCATC 60.450 48.000 3.98 0.00 37.52 2.92
2563 3093 5.657302 GGTACGGGTAATGATATCTCATCCT 59.343 44.000 3.98 0.00 41.34 3.24
2567 3097 7.126061 ACGGGTAATGATATCTCATCCTCATA 58.874 38.462 3.98 0.00 41.34 2.15
2568 3098 7.786943 ACGGGTAATGATATCTCATCCTCATAT 59.213 37.037 3.98 0.00 41.34 1.78
2571 3101 8.303156 GGTAATGATATCTCATCCTCATATCCG 58.697 40.741 3.98 0.00 41.34 4.18
2583 3113 3.561528 CCTCATATCCGTCCTAGCCACTA 60.562 52.174 0.00 0.00 0.00 2.74
2599 3129 3.181464 GCCACTAGGAAAGGTATCTGACC 60.181 52.174 0.00 0.00 43.09 4.02
2609 3139 1.339727 GGTATCTGACCCAACGGCTTT 60.340 52.381 0.00 0.00 43.25 3.51
2642 3172 2.521958 AAACTGCCCCATCCTCGTCG 62.522 60.000 0.00 0.00 0.00 5.12
2646 3176 2.520982 CCCCATCCTCGTCGCCTA 60.521 66.667 0.00 0.00 0.00 3.93
2677 3208 2.512974 CCACGGGGATGCGGTAAC 60.513 66.667 0.00 0.00 35.59 2.50
2697 3228 3.007635 ACGGTTAACCATTGCTAGCTTC 58.992 45.455 24.14 0.00 35.14 3.86
2702 3233 5.393962 GTTAACCATTGCTAGCTTCAAGTG 58.606 41.667 17.23 2.26 0.00 3.16
2710 3241 3.748048 TGCTAGCTTCAAGTGTGATTGAC 59.252 43.478 17.23 0.00 38.87 3.18
2725 3256 5.530543 TGTGATTGACTGCTTGTTGATGTAA 59.469 36.000 0.00 0.00 0.00 2.41
2753 3284 0.750850 GGCGGCTCCTACAATAGTCA 59.249 55.000 0.00 0.00 0.00 3.41
2754 3285 1.344763 GGCGGCTCCTACAATAGTCAT 59.655 52.381 0.00 0.00 0.00 3.06
2819 3350 9.764363 TGATGATATCCTTTTACTGTATCACAC 57.236 33.333 0.00 0.00 35.37 3.82
2820 3351 9.988815 GATGATATCCTTTTACTGTATCACACT 57.011 33.333 0.00 0.00 35.37 3.55
2826 3357 9.696572 ATCCTTTTACTGTATCACACTAGTAGA 57.303 33.333 3.59 0.00 0.00 2.59
2827 3358 9.524496 TCCTTTTACTGTATCACACTAGTAGAA 57.476 33.333 3.59 0.00 0.00 2.10
2832 3363 9.616634 TTACTGTATCACACTAGTAGAAAAACG 57.383 33.333 3.59 0.00 0.00 3.60
2833 3364 7.879070 ACTGTATCACACTAGTAGAAAAACGA 58.121 34.615 3.59 0.00 0.00 3.85
2834 3365 7.806960 ACTGTATCACACTAGTAGAAAAACGAC 59.193 37.037 3.59 0.00 0.00 4.34
2835 3366 7.879070 TGTATCACACTAGTAGAAAAACGACT 58.121 34.615 3.59 0.00 38.05 4.18
2836 3367 8.355169 TGTATCACACTAGTAGAAAAACGACTT 58.645 33.333 3.59 0.00 36.06 3.01
2837 3368 9.189723 GTATCACACTAGTAGAAAAACGACTTT 57.810 33.333 3.59 0.00 36.06 2.66
2838 3369 8.658499 ATCACACTAGTAGAAAAACGACTTTT 57.342 30.769 3.59 0.00 40.03 2.27
2839 3370 9.754382 ATCACACTAGTAGAAAAACGACTTTTA 57.246 29.630 3.59 0.00 37.36 1.52
2840 3371 9.241317 TCACACTAGTAGAAAAACGACTTTTAG 57.759 33.333 3.59 0.00 37.36 1.85
2841 3372 9.028185 CACACTAGTAGAAAAACGACTTTTAGT 57.972 33.333 3.59 0.00 37.36 2.24
2844 3375 9.684448 ACTAGTAGAAAAACGACTTTTAGTACC 57.316 33.333 3.59 0.00 37.36 3.34
2845 3376 7.629027 AGTAGAAAAACGACTTTTAGTACCG 57.371 36.000 0.00 0.00 37.36 4.02
2846 3377 5.912360 AGAAAAACGACTTTTAGTACCGG 57.088 39.130 0.00 0.00 37.36 5.28
2847 3378 5.359756 AGAAAAACGACTTTTAGTACCGGT 58.640 37.500 13.98 13.98 37.36 5.28
2848 3379 5.817296 AGAAAAACGACTTTTAGTACCGGTT 59.183 36.000 15.04 0.00 37.36 4.44
2849 3380 6.316140 AGAAAAACGACTTTTAGTACCGGTTT 59.684 34.615 15.04 4.12 37.07 3.27
2850 3381 5.408204 AAACGACTTTTAGTACCGGTTTG 57.592 39.130 15.04 0.00 23.02 2.93
2851 3382 4.058721 ACGACTTTTAGTACCGGTTTGT 57.941 40.909 15.04 0.00 0.00 2.83
2852 3383 5.195001 ACGACTTTTAGTACCGGTTTGTA 57.805 39.130 15.04 0.00 0.00 2.41
2853 3384 5.596845 ACGACTTTTAGTACCGGTTTGTAA 58.403 37.500 15.04 5.59 0.00 2.41
2854 3385 5.691754 ACGACTTTTAGTACCGGTTTGTAAG 59.308 40.000 15.04 12.96 0.00 2.34
2855 3386 5.119125 CGACTTTTAGTACCGGTTTGTAAGG 59.881 44.000 15.04 6.10 0.00 2.69
2856 3387 6.173427 ACTTTTAGTACCGGTTTGTAAGGA 57.827 37.500 15.04 0.00 0.00 3.36
2857 3388 5.991606 ACTTTTAGTACCGGTTTGTAAGGAC 59.008 40.000 15.04 1.06 0.00 3.85
2858 3389 4.535526 TTAGTACCGGTTTGTAAGGACC 57.464 45.455 15.04 0.00 0.00 4.46
2859 3390 2.613129 AGTACCGGTTTGTAAGGACCT 58.387 47.619 15.04 0.00 33.69 3.85
2860 3391 2.974794 AGTACCGGTTTGTAAGGACCTT 59.025 45.455 15.04 12.41 33.69 3.50
2861 3392 3.392285 AGTACCGGTTTGTAAGGACCTTT 59.608 43.478 15.04 0.00 33.69 3.11
2862 3393 4.592778 AGTACCGGTTTGTAAGGACCTTTA 59.407 41.667 15.04 0.00 33.69 1.85
2863 3394 4.011966 ACCGGTTTGTAAGGACCTTTAG 57.988 45.455 13.11 0.00 33.69 1.85
2864 3395 3.392285 ACCGGTTTGTAAGGACCTTTAGT 59.608 43.478 13.11 0.00 33.69 2.24
2865 3396 4.592778 ACCGGTTTGTAAGGACCTTTAGTA 59.407 41.667 13.11 0.00 33.69 1.82
2866 3397 4.931601 CCGGTTTGTAAGGACCTTTAGTAC 59.068 45.833 13.11 4.94 33.69 2.73
2867 3398 4.931601 CGGTTTGTAAGGACCTTTAGTACC 59.068 45.833 13.11 13.68 33.69 3.34
2868 3399 4.931601 GGTTTGTAAGGACCTTTAGTACCG 59.068 45.833 13.11 0.00 33.08 4.02
2869 3400 4.806640 TTGTAAGGACCTTTAGTACCGG 57.193 45.455 13.11 0.00 0.00 5.28
2870 3401 3.778265 TGTAAGGACCTTTAGTACCGGT 58.222 45.455 13.98 13.98 0.00 5.28
2871 3402 4.159557 TGTAAGGACCTTTAGTACCGGTT 58.840 43.478 15.04 0.00 0.00 4.44
2872 3403 3.969287 AAGGACCTTTAGTACCGGTTC 57.031 47.619 15.04 8.12 0.00 3.62
2873 3404 3.181393 AGGACCTTTAGTACCGGTTCT 57.819 47.619 15.04 17.06 31.71 3.01
2874 3405 2.830321 AGGACCTTTAGTACCGGTTCTG 59.170 50.000 22.71 9.12 35.33 3.02
2875 3406 2.827921 GGACCTTTAGTACCGGTTCTGA 59.172 50.000 22.71 12.72 0.00 3.27
2876 3407 3.259123 GGACCTTTAGTACCGGTTCTGAA 59.741 47.826 22.71 19.08 0.00 3.02
2877 3408 4.262592 GGACCTTTAGTACCGGTTCTGAAA 60.263 45.833 22.71 16.22 0.00 2.69
2878 3409 4.635223 ACCTTTAGTACCGGTTCTGAAAC 58.365 43.478 22.71 9.39 34.46 2.78
2885 3416 4.475527 GGTTCTGAAACCGGCACT 57.524 55.556 0.00 0.00 45.33 4.40
2886 3417 3.618171 GGTTCTGAAACCGGCACTA 57.382 52.632 0.00 0.00 45.33 2.74
2887 3418 1.886886 GGTTCTGAAACCGGCACTAA 58.113 50.000 0.00 0.00 45.33 2.24
2888 3419 2.223745 GGTTCTGAAACCGGCACTAAA 58.776 47.619 0.00 0.00 45.33 1.85
2889 3420 2.225727 GGTTCTGAAACCGGCACTAAAG 59.774 50.000 0.00 0.00 45.33 1.85
2890 3421 3.135994 GTTCTGAAACCGGCACTAAAGA 58.864 45.455 0.00 0.00 0.00 2.52
2891 3422 3.040147 TCTGAAACCGGCACTAAAGAG 57.960 47.619 0.00 0.00 0.00 2.85
2892 3423 2.367567 TCTGAAACCGGCACTAAAGAGT 59.632 45.455 0.00 0.00 35.80 3.24
2905 3436 4.500452 ACTAAAGAGTGGGGACTAAAGGT 58.500 43.478 0.00 0.00 33.41 3.50
2906 3437 4.531339 ACTAAAGAGTGGGGACTAAAGGTC 59.469 45.833 0.00 0.00 38.17 3.85
2929 3460 3.830698 CCCCCTTTAGTCCCGGTT 58.169 61.111 0.00 0.00 0.00 4.44
2930 3461 1.605992 CCCCCTTTAGTCCCGGTTC 59.394 63.158 0.00 0.00 0.00 3.62
2931 3462 1.202769 CCCCCTTTAGTCCCGGTTCA 61.203 60.000 0.00 0.00 0.00 3.18
2932 3463 0.694196 CCCCTTTAGTCCCGGTTCAA 59.306 55.000 0.00 0.00 0.00 2.69
2933 3464 1.612462 CCCCTTTAGTCCCGGTTCAAC 60.612 57.143 0.00 0.00 0.00 3.18
2934 3465 1.072648 CCCTTTAGTCCCGGTTCAACA 59.927 52.381 0.00 0.00 0.00 3.33
2935 3466 2.148768 CCTTTAGTCCCGGTTCAACAC 58.851 52.381 0.00 0.00 0.00 3.32
2936 3467 1.796459 CTTTAGTCCCGGTTCAACACG 59.204 52.381 0.00 0.00 0.00 4.49
2937 3468 1.039068 TTAGTCCCGGTTCAACACGA 58.961 50.000 0.00 0.00 0.00 4.35
2938 3469 1.039068 TAGTCCCGGTTCAACACGAA 58.961 50.000 0.00 0.00 0.00 3.85
2945 3476 4.442018 TTCAACACGAACCGGGAC 57.558 55.556 6.32 0.00 32.98 4.46
2946 3477 1.227615 TTCAACACGAACCGGGACC 60.228 57.895 6.32 0.00 32.98 4.46
2947 3478 1.969200 TTCAACACGAACCGGGACCA 61.969 55.000 6.32 0.00 32.98 4.02
2948 3479 1.524165 CAACACGAACCGGGACCAA 60.524 57.895 6.32 0.00 32.98 3.67
2949 3480 1.096386 CAACACGAACCGGGACCAAA 61.096 55.000 6.32 0.00 32.98 3.28
2950 3481 0.816421 AACACGAACCGGGACCAAAG 60.816 55.000 6.32 0.00 32.98 2.77
2951 3482 1.964373 CACGAACCGGGACCAAAGG 60.964 63.158 6.32 0.00 28.17 3.11
2952 3483 3.053896 CGAACCGGGACCAAAGGC 61.054 66.667 6.32 0.00 0.00 4.35
2953 3484 2.675423 GAACCGGGACCAAAGGCC 60.675 66.667 6.32 0.00 0.00 5.19
2954 3485 4.295199 AACCGGGACCAAAGGCCC 62.295 66.667 6.32 0.00 36.26 5.80
2958 3489 3.909651 GGGACCAAAGGCCCACCA 61.910 66.667 0.00 0.00 38.39 4.17
2959 3490 2.600470 GGACCAAAGGCCCACCAC 60.600 66.667 0.00 0.00 39.06 4.16
2960 3491 2.983592 GACCAAAGGCCCACCACG 60.984 66.667 0.00 0.00 39.06 4.94
2961 3492 3.785122 GACCAAAGGCCCACCACGT 62.785 63.158 0.00 0.00 39.06 4.49
2962 3493 3.294493 CCAAAGGCCCACCACGTG 61.294 66.667 9.08 9.08 39.06 4.49
2990 3521 4.436998 CGCCGTGGTCTGGAGGAC 62.437 72.222 0.00 0.00 43.79 3.85
3006 3537 3.545724 GACCTTTAGTCCCGGTTGG 57.454 57.895 0.00 0.00 39.84 3.77
3007 3538 0.689055 GACCTTTAGTCCCGGTTGGT 59.311 55.000 0.00 0.00 39.84 3.67
3008 3539 1.901833 GACCTTTAGTCCCGGTTGGTA 59.098 52.381 0.00 0.00 39.84 3.25
3009 3540 2.302733 GACCTTTAGTCCCGGTTGGTAA 59.697 50.000 0.00 0.00 39.84 2.85
3010 3541 2.303890 ACCTTTAGTCCCGGTTGGTAAG 59.696 50.000 0.00 0.00 34.77 2.34
3011 3542 2.355412 CCTTTAGTCCCGGTTGGTAAGG 60.355 54.545 0.00 4.09 34.77 2.69
3012 3543 2.323999 TTAGTCCCGGTTGGTAAGGA 57.676 50.000 0.00 0.00 34.77 3.36
3013 3544 2.555732 TAGTCCCGGTTGGTAAGGAT 57.444 50.000 0.00 0.00 34.77 3.24
3014 3545 1.665137 AGTCCCGGTTGGTAAGGATT 58.335 50.000 0.00 0.00 34.77 3.01
3015 3546 1.990327 AGTCCCGGTTGGTAAGGATTT 59.010 47.619 0.00 0.00 34.77 2.17
3016 3547 2.377531 AGTCCCGGTTGGTAAGGATTTT 59.622 45.455 0.00 0.00 34.77 1.82
3017 3548 3.159472 GTCCCGGTTGGTAAGGATTTTT 58.841 45.455 0.00 0.00 34.77 1.94
3048 3579 7.701809 TTTGAAATAAAGTAAAAACAGCCCG 57.298 32.000 0.00 0.00 0.00 6.13
3049 3580 5.224135 TGAAATAAAGTAAAAACAGCCCGC 58.776 37.500 0.00 0.00 0.00 6.13
3050 3581 3.861276 ATAAAGTAAAAACAGCCCGCC 57.139 42.857 0.00 0.00 0.00 6.13
3051 3582 1.699730 AAAGTAAAAACAGCCCGCCT 58.300 45.000 0.00 0.00 0.00 5.52
3052 3583 2.572209 AAGTAAAAACAGCCCGCCTA 57.428 45.000 0.00 0.00 0.00 3.93
3053 3584 1.817357 AGTAAAAACAGCCCGCCTAC 58.183 50.000 0.00 0.00 0.00 3.18
3054 3585 1.350019 AGTAAAAACAGCCCGCCTACT 59.650 47.619 0.00 0.00 0.00 2.57
3055 3586 1.467342 GTAAAAACAGCCCGCCTACTG 59.533 52.381 0.00 0.00 39.86 2.74
3056 3587 0.893727 AAAAACAGCCCGCCTACTGG 60.894 55.000 0.00 0.00 38.25 4.00
3079 3610 4.415332 CACGGCCTGCGTACGACT 62.415 66.667 21.65 0.00 0.00 4.18
3080 3611 2.747460 ACGGCCTGCGTACGACTA 60.747 61.111 21.65 3.14 0.00 2.59
3081 3612 2.024305 CGGCCTGCGTACGACTAG 59.976 66.667 21.65 13.06 0.00 2.57
3082 3613 2.466982 CGGCCTGCGTACGACTAGA 61.467 63.158 21.65 0.00 0.00 2.43
3083 3614 1.805254 GGCCTGCGTACGACTAGAA 59.195 57.895 21.65 0.00 0.00 2.10
3084 3615 0.171903 GGCCTGCGTACGACTAGAAA 59.828 55.000 21.65 0.00 0.00 2.52
3085 3616 1.266466 GCCTGCGTACGACTAGAAAC 58.734 55.000 21.65 0.00 0.00 2.78
3086 3617 1.905449 CCTGCGTACGACTAGAAACC 58.095 55.000 21.65 0.00 0.00 3.27
3087 3618 1.468736 CCTGCGTACGACTAGAAACCC 60.469 57.143 21.65 0.00 0.00 4.11
3088 3619 1.200716 CTGCGTACGACTAGAAACCCA 59.799 52.381 21.65 1.92 0.00 4.51
3089 3620 1.612950 TGCGTACGACTAGAAACCCAA 59.387 47.619 21.65 0.00 0.00 4.12
3090 3621 2.231964 TGCGTACGACTAGAAACCCAAT 59.768 45.455 21.65 0.00 0.00 3.16
3091 3622 2.856557 GCGTACGACTAGAAACCCAATC 59.143 50.000 21.65 0.00 0.00 2.67
3092 3623 3.428589 GCGTACGACTAGAAACCCAATCT 60.429 47.826 21.65 0.00 0.00 2.40
3093 3624 4.349501 CGTACGACTAGAAACCCAATCTC 58.650 47.826 10.44 0.00 0.00 2.75
3094 3625 4.096081 CGTACGACTAGAAACCCAATCTCT 59.904 45.833 10.44 0.00 0.00 3.10
3095 3626 5.295292 CGTACGACTAGAAACCCAATCTCTA 59.705 44.000 10.44 0.00 0.00 2.43
3096 3627 5.838531 ACGACTAGAAACCCAATCTCTAG 57.161 43.478 0.00 4.24 42.86 2.43
3100 3631 6.301169 ACTAGAAACCCAATCTCTAGTTGG 57.699 41.667 0.00 4.03 46.16 3.77
3105 3636 2.338577 CCAATCTCTAGTTGGGCCAG 57.661 55.000 6.23 0.00 41.90 4.85
3106 3637 1.133976 CCAATCTCTAGTTGGGCCAGG 60.134 57.143 6.23 0.00 41.90 4.45
3107 3638 1.839994 CAATCTCTAGTTGGGCCAGGA 59.160 52.381 6.23 3.44 0.00 3.86
3108 3639 2.441001 CAATCTCTAGTTGGGCCAGGAT 59.559 50.000 6.23 0.00 0.00 3.24
3109 3640 1.500474 TCTCTAGTTGGGCCAGGATG 58.500 55.000 6.23 0.00 0.00 3.51
3110 3641 0.179034 CTCTAGTTGGGCCAGGATGC 60.179 60.000 6.23 0.00 31.97 3.91
3111 3642 0.913934 TCTAGTTGGGCCAGGATGCA 60.914 55.000 6.23 0.00 31.97 3.96
3112 3643 0.465097 CTAGTTGGGCCAGGATGCAG 60.465 60.000 6.23 0.00 31.97 4.41
3113 3644 1.925285 TAGTTGGGCCAGGATGCAGG 61.925 60.000 6.23 0.00 31.97 4.85
3118 3649 4.534824 GCCAGGATGCAGGCCCAT 62.535 66.667 9.67 0.00 45.18 4.00
3119 3650 3.137385 GCCAGGATGCAGGCCCATA 62.137 63.158 9.67 0.00 45.18 2.74
3120 3651 1.228367 CCAGGATGCAGGCCCATAC 60.228 63.158 0.00 0.00 31.97 2.39
3121 3652 1.598962 CAGGATGCAGGCCCATACG 60.599 63.158 0.00 0.00 31.14 3.06
3122 3653 2.281761 GGATGCAGGCCCATACGG 60.282 66.667 0.00 0.00 0.00 4.02
3140 3671 2.603008 CCCAATAGGCCCCACAGG 59.397 66.667 0.00 0.00 39.47 4.00
3152 3683 2.770164 CCCACAGGGTAGAAGACTTG 57.230 55.000 0.00 0.00 38.25 3.16
3153 3684 1.339151 CCCACAGGGTAGAAGACTTGC 60.339 57.143 0.00 0.00 38.25 4.01
3154 3685 1.347707 CCACAGGGTAGAAGACTTGCA 59.652 52.381 0.00 0.00 0.00 4.08
3155 3686 2.224523 CCACAGGGTAGAAGACTTGCAA 60.225 50.000 0.00 0.00 0.00 4.08
3156 3687 3.560025 CCACAGGGTAGAAGACTTGCAAT 60.560 47.826 0.00 0.00 0.00 3.56
3157 3688 4.323485 CCACAGGGTAGAAGACTTGCAATA 60.323 45.833 0.00 0.00 0.00 1.90
3158 3689 4.872691 CACAGGGTAGAAGACTTGCAATAG 59.127 45.833 0.00 0.00 0.00 1.73
3159 3690 4.080863 ACAGGGTAGAAGACTTGCAATAGG 60.081 45.833 0.00 0.00 0.00 2.57
3160 3691 3.118223 AGGGTAGAAGACTTGCAATAGGC 60.118 47.826 0.00 0.00 45.13 3.93
3161 3692 3.206964 GGTAGAAGACTTGCAATAGGCC 58.793 50.000 0.00 0.00 43.89 5.19
3162 3693 2.426842 AGAAGACTTGCAATAGGCCC 57.573 50.000 0.00 0.00 43.89 5.80
3163 3694 1.635487 AGAAGACTTGCAATAGGCCCA 59.365 47.619 0.00 0.00 43.89 5.36
3164 3695 1.745653 GAAGACTTGCAATAGGCCCAC 59.254 52.381 0.00 0.00 43.89 4.61
3165 3696 0.698238 AGACTTGCAATAGGCCCACA 59.302 50.000 0.00 0.00 43.89 4.17
3166 3697 1.075374 AGACTTGCAATAGGCCCACAA 59.925 47.619 0.00 0.00 43.89 3.33
3167 3698 1.892474 GACTTGCAATAGGCCCACAAA 59.108 47.619 0.00 0.00 43.89 2.83
3168 3699 1.895131 ACTTGCAATAGGCCCACAAAG 59.105 47.619 0.00 0.00 43.89 2.77
3169 3700 1.205417 CTTGCAATAGGCCCACAAAGG 59.795 52.381 0.00 0.00 43.89 3.11
3177 3708 4.841441 CCCACAAAGGCCTGCTTA 57.159 55.556 5.69 0.00 35.39 3.09
3178 3709 2.571548 CCCACAAAGGCCTGCTTAG 58.428 57.895 5.69 0.00 35.39 2.18
3179 3710 0.038166 CCCACAAAGGCCTGCTTAGA 59.962 55.000 5.69 0.00 35.39 2.10
3180 3711 1.457346 CCACAAAGGCCTGCTTAGAG 58.543 55.000 5.69 0.00 0.00 2.43
3181 3712 1.003580 CCACAAAGGCCTGCTTAGAGA 59.996 52.381 5.69 0.00 0.00 3.10
3182 3713 2.354259 CACAAAGGCCTGCTTAGAGAG 58.646 52.381 5.69 0.00 0.00 3.20
3183 3714 1.280421 ACAAAGGCCTGCTTAGAGAGG 59.720 52.381 5.69 0.00 0.00 3.69
3184 3715 1.556911 CAAAGGCCTGCTTAGAGAGGA 59.443 52.381 5.69 0.00 0.00 3.71
3185 3716 1.494960 AAGGCCTGCTTAGAGAGGAG 58.505 55.000 5.69 0.00 42.98 3.69
3186 3717 1.048160 AGGCCTGCTTAGAGAGGAGC 61.048 60.000 3.11 0.00 42.08 4.70
3187 3718 1.048160 GGCCTGCTTAGAGAGGAGCT 61.048 60.000 0.00 0.00 42.08 4.09
3188 3719 0.389025 GCCTGCTTAGAGAGGAGCTC 59.611 60.000 4.71 4.71 42.08 4.09
3195 3726 2.795297 GAGAGGAGCTCGACACGG 59.205 66.667 7.83 0.00 35.36 4.94
3196 3727 2.034376 AGAGGAGCTCGACACGGT 59.966 61.111 7.83 0.00 35.36 4.83
3197 3728 0.743701 GAGAGGAGCTCGACACGGTA 60.744 60.000 7.83 0.00 35.36 4.02
3198 3729 0.745128 AGAGGAGCTCGACACGGTAG 60.745 60.000 7.83 0.00 35.36 3.18
3199 3730 2.102553 GGAGCTCGACACGGTAGC 59.897 66.667 7.83 0.00 36.48 3.58
3200 3731 2.102553 GAGCTCGACACGGTAGCC 59.897 66.667 0.00 0.00 36.92 3.93
3216 3747 2.506962 CCGCGGTGGGGCTTATAA 59.493 61.111 19.50 0.00 0.00 0.98
3217 3748 1.153127 CCGCGGTGGGGCTTATAAA 60.153 57.895 19.50 0.00 0.00 1.40
3218 3749 1.441732 CCGCGGTGGGGCTTATAAAC 61.442 60.000 19.50 0.00 0.00 2.01
3219 3750 1.441732 CGCGGTGGGGCTTATAAACC 61.442 60.000 0.00 0.00 0.00 3.27
3220 3751 2.697819 CGGTGGGGCTTATAAACCG 58.302 57.895 10.41 10.41 46.69 4.44
3221 3752 3.105187 GGTGGGGCTTATAAACCGG 57.895 57.895 0.00 0.00 0.00 5.28
3222 3753 0.256752 GGTGGGGCTTATAAACCGGT 59.743 55.000 0.00 0.00 0.00 5.28
3223 3754 1.385528 GTGGGGCTTATAAACCGGTG 58.614 55.000 8.52 0.00 0.00 4.94
3224 3755 0.394625 TGGGGCTTATAAACCGGTGC 60.395 55.000 8.52 5.67 0.00 5.01
3225 3756 1.441732 GGGGCTTATAAACCGGTGCG 61.442 60.000 8.52 0.00 0.00 5.34
3226 3757 0.462403 GGGCTTATAAACCGGTGCGA 60.462 55.000 8.52 0.00 0.00 5.10
3227 3758 1.371595 GGCTTATAAACCGGTGCGAA 58.628 50.000 8.52 0.00 0.00 4.70
3228 3759 1.063027 GGCTTATAAACCGGTGCGAAC 59.937 52.381 8.52 0.00 0.00 3.95
3229 3760 2.004733 GCTTATAAACCGGTGCGAACT 58.995 47.619 8.52 0.00 0.00 3.01
3230 3761 2.030091 GCTTATAAACCGGTGCGAACTC 59.970 50.000 8.52 0.00 0.00 3.01
3231 3762 2.298411 TATAAACCGGTGCGAACTCC 57.702 50.000 8.52 0.00 0.00 3.85
3232 3763 0.611714 ATAAACCGGTGCGAACTCCT 59.388 50.000 8.52 0.00 0.00 3.69
3233 3764 0.037975 TAAACCGGTGCGAACTCCTC 60.038 55.000 8.52 0.00 0.00 3.71
3234 3765 1.755393 AAACCGGTGCGAACTCCTCT 61.755 55.000 8.52 0.00 0.00 3.69
3235 3766 2.156051 AACCGGTGCGAACTCCTCTC 62.156 60.000 8.52 0.00 0.00 3.20
3236 3767 2.636412 CCGGTGCGAACTCCTCTCA 61.636 63.158 0.00 0.00 0.00 3.27
3237 3768 1.289066 CGGTGCGAACTCCTCTCAA 59.711 57.895 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.777802 ACTAGCTCGTTGATCAATAGATGG 58.222 41.667 19.51 17.62 33.72 3.51
1 2 6.442112 TGACTAGCTCGTTGATCAATAGATG 58.558 40.000 19.51 12.48 33.72 2.90
3 4 6.095580 AGTTGACTAGCTCGTTGATCAATAGA 59.904 38.462 19.51 16.55 0.00 1.98
4 5 6.269315 AGTTGACTAGCTCGTTGATCAATAG 58.731 40.000 12.12 13.07 0.00 1.73
5 6 6.208988 AGTTGACTAGCTCGTTGATCAATA 57.791 37.500 12.12 2.38 0.00 1.90
6 7 5.078411 AGTTGACTAGCTCGTTGATCAAT 57.922 39.130 12.12 0.00 0.00 2.57
7 8 4.521130 AGTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
8 9 4.941873 TCTAGTTGACTAGCTCGTTGATCA 59.058 41.667 12.30 0.00 44.24 2.92
9 10 5.487153 TCTAGTTGACTAGCTCGTTGATC 57.513 43.478 12.30 0.00 44.24 2.92
10 11 4.336993 CCTCTAGTTGACTAGCTCGTTGAT 59.663 45.833 12.30 0.00 44.24 2.57
11 12 3.690139 CCTCTAGTTGACTAGCTCGTTGA 59.310 47.826 12.30 0.00 44.24 3.18
13 14 2.424246 GCCTCTAGTTGACTAGCTCGTT 59.576 50.000 12.30 0.00 44.24 3.85
16 17 4.885325 AGTAAGCCTCTAGTTGACTAGCTC 59.115 45.833 12.30 5.16 44.24 4.09
17 18 4.862371 AGTAAGCCTCTAGTTGACTAGCT 58.138 43.478 12.30 5.64 44.24 3.32
18 19 5.239963 CCTAGTAAGCCTCTAGTTGACTAGC 59.760 48.000 12.30 3.61 44.24 3.42
21 22 4.230041 TCCCTAGTAAGCCTCTAGTTGACT 59.770 45.833 0.00 0.00 34.72 3.41
22 23 4.338964 GTCCCTAGTAAGCCTCTAGTTGAC 59.661 50.000 0.00 8.18 34.72 3.18
23 24 4.017775 TGTCCCTAGTAAGCCTCTAGTTGA 60.018 45.833 0.00 1.98 34.72 3.18
24 25 4.279145 TGTCCCTAGTAAGCCTCTAGTTG 58.721 47.826 0.00 0.00 34.72 3.16
25 26 4.604784 TGTCCCTAGTAAGCCTCTAGTT 57.395 45.455 0.00 0.00 34.72 2.24
26 27 4.475345 CATGTCCCTAGTAAGCCTCTAGT 58.525 47.826 0.00 0.00 34.72 2.57
27 28 3.829601 CCATGTCCCTAGTAAGCCTCTAG 59.170 52.174 0.00 0.00 35.86 2.43
28 29 3.206866 ACCATGTCCCTAGTAAGCCTCTA 59.793 47.826 0.00 0.00 0.00 2.43
29 30 2.022918 ACCATGTCCCTAGTAAGCCTCT 60.023 50.000 0.00 0.00 0.00 3.69
30 31 2.103263 CACCATGTCCCTAGTAAGCCTC 59.897 54.545 0.00 0.00 0.00 4.70
31 32 2.119495 CACCATGTCCCTAGTAAGCCT 58.881 52.381 0.00 0.00 0.00 4.58
32 33 1.838077 ACACCATGTCCCTAGTAAGCC 59.162 52.381 0.00 0.00 0.00 4.35
33 34 3.270877 CAACACCATGTCCCTAGTAAGC 58.729 50.000 0.00 0.00 0.00 3.09
34 35 4.504858 GACAACACCATGTCCCTAGTAAG 58.495 47.826 0.00 0.00 43.11 2.34
35 36 4.546829 GACAACACCATGTCCCTAGTAA 57.453 45.455 0.00 0.00 43.11 2.24
44 45 4.943705 GTGGAATCATAGACAACACCATGT 59.056 41.667 0.00 0.00 35.90 3.21
45 46 4.943093 TGTGGAATCATAGACAACACCATG 59.057 41.667 0.00 0.00 0.00 3.66
46 47 4.943705 GTGTGGAATCATAGACAACACCAT 59.056 41.667 0.00 0.00 0.00 3.55
47 48 4.202409 TGTGTGGAATCATAGACAACACCA 60.202 41.667 0.00 0.00 0.00 4.17
48 49 4.323417 TGTGTGGAATCATAGACAACACC 58.677 43.478 0.00 0.00 0.00 4.16
49 50 5.412594 ACATGTGTGGAATCATAGACAACAC 59.587 40.000 0.00 0.00 0.00 3.32
50 51 5.559770 ACATGTGTGGAATCATAGACAACA 58.440 37.500 0.00 0.00 0.00 3.33
51 52 7.712639 AGATACATGTGTGGAATCATAGACAAC 59.287 37.037 9.11 0.00 0.00 3.32
52 53 7.712205 CAGATACATGTGTGGAATCATAGACAA 59.288 37.037 9.11 0.00 0.00 3.18
53 54 7.069826 TCAGATACATGTGTGGAATCATAGACA 59.930 37.037 9.11 0.00 0.00 3.41
54 55 7.436933 TCAGATACATGTGTGGAATCATAGAC 58.563 38.462 9.11 0.00 0.00 2.59
55 56 7.288621 ACTCAGATACATGTGTGGAATCATAGA 59.711 37.037 9.11 2.62 0.00 1.98
56 57 7.440198 ACTCAGATACATGTGTGGAATCATAG 58.560 38.462 9.11 7.03 0.00 2.23
57 58 7.365497 ACTCAGATACATGTGTGGAATCATA 57.635 36.000 9.11 0.00 0.00 2.15
58 59 6.244552 ACTCAGATACATGTGTGGAATCAT 57.755 37.500 9.11 0.00 0.00 2.45
59 60 5.682234 ACTCAGATACATGTGTGGAATCA 57.318 39.130 9.11 0.00 0.00 2.57
60 61 6.037610 GGAAACTCAGATACATGTGTGGAATC 59.962 42.308 9.11 2.83 0.00 2.52
61 62 5.882557 GGAAACTCAGATACATGTGTGGAAT 59.117 40.000 9.11 0.00 0.00 3.01
62 63 5.013079 AGGAAACTCAGATACATGTGTGGAA 59.987 40.000 9.11 0.00 32.90 3.53
63 64 4.532126 AGGAAACTCAGATACATGTGTGGA 59.468 41.667 9.11 1.00 32.90 4.02
64 65 4.836825 AGGAAACTCAGATACATGTGTGG 58.163 43.478 9.11 0.00 32.90 4.17
65 66 7.267857 TGATAGGAAACTCAGATACATGTGTG 58.732 38.462 9.11 3.44 43.67 3.82
66 67 7.423844 TGATAGGAAACTCAGATACATGTGT 57.576 36.000 9.11 0.10 43.67 3.72
67 68 8.899427 ATTGATAGGAAACTCAGATACATGTG 57.101 34.615 9.11 0.00 43.67 3.21
68 69 9.988815 GTATTGATAGGAAACTCAGATACATGT 57.011 33.333 2.69 2.69 43.67 3.21
69 70 9.987272 TGTATTGATAGGAAACTCAGATACATG 57.013 33.333 0.00 0.00 43.67 3.21
77 78 9.547753 GCTAGAATTGTATTGATAGGAAACTCA 57.452 33.333 0.00 0.00 43.67 3.41
78 79 9.547753 TGCTAGAATTGTATTGATAGGAAACTC 57.452 33.333 0.00 0.00 43.67 3.01
81 82 9.288576 CCATGCTAGAATTGTATTGATAGGAAA 57.711 33.333 0.00 0.00 0.00 3.13
82 83 8.659527 TCCATGCTAGAATTGTATTGATAGGAA 58.340 33.333 0.00 0.00 0.00 3.36
83 84 8.206126 TCCATGCTAGAATTGTATTGATAGGA 57.794 34.615 0.00 0.00 0.00 2.94
92 93 9.990360 TCGTTTATTATCCATGCTAGAATTGTA 57.010 29.630 0.00 0.00 0.00 2.41
93 94 8.902540 TCGTTTATTATCCATGCTAGAATTGT 57.097 30.769 0.00 0.00 0.00 2.71
162 163 4.437682 TGTTGGAAATATGCCCTAGAGG 57.562 45.455 0.00 0.00 39.47 3.69
163 164 5.684704 TCTTGTTGGAAATATGCCCTAGAG 58.315 41.667 0.00 0.00 0.00 2.43
164 165 5.708736 TCTTGTTGGAAATATGCCCTAGA 57.291 39.130 0.00 0.00 0.00 2.43
165 166 5.180117 CGATCTTGTTGGAAATATGCCCTAG 59.820 44.000 0.00 0.00 0.00 3.02
166 167 5.063204 CGATCTTGTTGGAAATATGCCCTA 58.937 41.667 0.00 0.00 0.00 3.53
167 168 3.885297 CGATCTTGTTGGAAATATGCCCT 59.115 43.478 0.00 0.00 0.00 5.19
168 169 3.632145 ACGATCTTGTTGGAAATATGCCC 59.368 43.478 0.00 0.00 0.00 5.36
169 170 4.576463 AGACGATCTTGTTGGAAATATGCC 59.424 41.667 0.00 0.00 0.00 4.40
170 171 5.505286 CAGACGATCTTGTTGGAAATATGC 58.495 41.667 0.00 0.00 0.00 3.14
171 172 5.505286 GCAGACGATCTTGTTGGAAATATG 58.495 41.667 0.00 0.00 0.00 1.78
172 173 4.271049 CGCAGACGATCTTGTTGGAAATAT 59.729 41.667 0.00 0.00 43.93 1.28
173 174 3.616821 CGCAGACGATCTTGTTGGAAATA 59.383 43.478 0.00 0.00 43.93 1.40
174 175 2.416547 CGCAGACGATCTTGTTGGAAAT 59.583 45.455 0.00 0.00 43.93 2.17
175 176 1.798223 CGCAGACGATCTTGTTGGAAA 59.202 47.619 0.00 0.00 43.93 3.13
176 177 1.000394 TCGCAGACGATCTTGTTGGAA 60.000 47.619 0.00 0.00 45.12 3.53
177 178 0.601057 TCGCAGACGATCTTGTTGGA 59.399 50.000 0.00 0.00 45.12 3.53
178 179 3.122150 TCGCAGACGATCTTGTTGG 57.878 52.632 0.00 0.00 45.12 3.77
605 610 9.624697 GCACTCAGAACAACATGAAATAAATAA 57.375 29.630 0.00 0.00 0.00 1.40
606 611 7.962373 CGCACTCAGAACAACATGAAATAAATA 59.038 33.333 0.00 0.00 0.00 1.40
607 612 6.803320 CGCACTCAGAACAACATGAAATAAAT 59.197 34.615 0.00 0.00 0.00 1.40
608 613 6.142139 CGCACTCAGAACAACATGAAATAAA 58.858 36.000 0.00 0.00 0.00 1.40
609 614 5.238432 ACGCACTCAGAACAACATGAAATAA 59.762 36.000 0.00 0.00 0.00 1.40
610 615 4.754618 ACGCACTCAGAACAACATGAAATA 59.245 37.500 0.00 0.00 0.00 1.40
611 616 3.565482 ACGCACTCAGAACAACATGAAAT 59.435 39.130 0.00 0.00 0.00 2.17
822 828 5.923204 TGCAGGCTTTTATTTCTGGAAAAA 58.077 33.333 0.00 0.00 33.56 1.94
900 906 2.270352 ACGGAACTTGAATTGGAGCA 57.730 45.000 0.00 0.00 0.00 4.26
901 907 2.351738 CCAACGGAACTTGAATTGGAGC 60.352 50.000 0.00 0.00 42.04 4.70
926 934 6.373774 CCATTGAAGAATATAGATGAGGTGGC 59.626 42.308 0.00 0.00 0.00 5.01
929 937 8.547173 GGATCCATTGAAGAATATAGATGAGGT 58.453 37.037 6.95 0.00 0.00 3.85
948 959 2.168106 GCTAGCTCGATCATGGATCCAT 59.832 50.000 22.15 22.15 35.83 3.41
959 970 1.777030 CTGTCCGTCGCTAGCTCGAT 61.777 60.000 23.69 0.00 40.84 3.59
985 996 3.554129 CGAAACATGTCTGACTACACCCA 60.554 47.826 9.51 0.00 30.75 4.51
1126 1146 5.401750 TGAAAGAGGGGGAAATTGAATTGA 58.598 37.500 0.00 0.00 0.00 2.57
1128 1148 4.223700 GCTGAAAGAGGGGGAAATTGAATT 59.776 41.667 0.00 0.00 34.07 2.17
1130 1150 3.165071 GCTGAAAGAGGGGGAAATTGAA 58.835 45.455 0.00 0.00 34.07 2.69
1131 1151 2.807676 GCTGAAAGAGGGGGAAATTGA 58.192 47.619 0.00 0.00 34.07 2.57
1132 1152 1.474077 CGCTGAAAGAGGGGGAAATTG 59.526 52.381 0.00 0.00 34.07 2.32
1133 1153 1.075536 ACGCTGAAAGAGGGGGAAATT 59.924 47.619 0.00 0.00 38.45 1.82
1135 1155 0.250727 CACGCTGAAAGAGGGGGAAA 60.251 55.000 0.00 0.00 40.61 3.13
1141 1182 0.671781 CAGGTCCACGCTGAAAGAGG 60.672 60.000 0.00 0.00 38.45 3.69
1158 1199 4.556942 TCAAGTTTCATCAAGCACACAG 57.443 40.909 0.00 0.00 0.00 3.66
1165 1206 9.350357 CACCAGAAAATATCAAGTTTCATCAAG 57.650 33.333 1.80 0.00 41.12 3.02
1177 1222 7.838884 TGCAATTTGATCACCAGAAAATATCA 58.161 30.769 0.00 0.00 0.00 2.15
1311 1371 3.081804 CACCTTCATACAGGTCCAAACC 58.918 50.000 0.00 0.00 44.63 3.27
1419 1479 2.094442 ACCACAACCGTTTTGTTTCCTG 60.094 45.455 0.00 0.00 0.00 3.86
1445 1505 7.224949 GCGGAGAGTAATAATTAAGCTCAAGTT 59.775 37.037 13.26 0.00 0.00 2.66
1471 1533 1.548973 AAACACACGCTCGCTCGAAG 61.549 55.000 3.28 0.00 0.00 3.79
1505 1571 7.066284 GGAAGTAAACTACGATACACTCCTACA 59.934 40.741 0.00 0.00 0.00 2.74
1509 1575 6.094603 TCAGGAAGTAAACTACGATACACTCC 59.905 42.308 0.00 0.00 31.44 3.85
1510 1576 7.081526 TCAGGAAGTAAACTACGATACACTC 57.918 40.000 0.00 0.00 0.00 3.51
1527 1593 2.251409 ATCCATCACGCATCAGGAAG 57.749 50.000 0.00 0.00 31.17 3.46
1568 1635 7.265495 CGCTAATATGTAAAAATACGCTTTCGG 59.735 37.037 0.00 0.00 40.69 4.30
1595 1662 3.738982 CGTTGTAAGGGATCCATGCATA 58.261 45.455 15.23 0.00 0.00 3.14
1614 1685 3.081061 TGACAAATGCAAGATTAGGCGT 58.919 40.909 0.00 0.00 0.00 5.68
1624 1695 0.032403 GCTGCCTGTGACAAATGCAA 59.968 50.000 0.00 0.00 0.00 4.08
1680 1753 7.009631 CGACTTCAAGGTCTTCATGTAATGTAG 59.990 40.741 0.00 0.00 42.37 2.74
1736 1810 2.037641 CCCATGACTCTCTGTGTCACAA 59.962 50.000 7.18 0.00 45.57 3.33
1752 1826 2.361610 GCCACCCTGACACCCATG 60.362 66.667 0.00 0.00 0.00 3.66
1856 1931 4.493547 CTGTTTTGTTTCTCTTGCAACCA 58.506 39.130 0.00 0.00 0.00 3.67
1964 2484 3.414549 TCGAAAAACTGCAAAGTGACC 57.585 42.857 0.00 0.00 0.00 4.02
1992 2512 5.396772 CCAAGATGCCTCCTTTGTACTCATA 60.397 44.000 0.00 0.00 0.00 2.15
2221 2746 0.460987 CAATCAGTCCTCGAGCACCC 60.461 60.000 6.99 0.00 0.00 4.61
2335 2865 7.584108 TGTAAAATGCAATCACACAAGTAGAG 58.416 34.615 0.00 0.00 0.00 2.43
2339 2869 6.985645 ACAATGTAAAATGCAATCACACAAGT 59.014 30.769 0.00 0.00 0.00 3.16
2366 2896 8.662781 AGAAGCTTCGCAACATAGATAAATAA 57.337 30.769 20.43 0.00 0.00 1.40
2367 2897 8.662781 AAGAAGCTTCGCAACATAGATAAATA 57.337 30.769 20.43 0.00 0.00 1.40
2368 2898 7.559590 AAGAAGCTTCGCAACATAGATAAAT 57.440 32.000 20.43 0.00 0.00 1.40
2369 2899 6.985188 AAGAAGCTTCGCAACATAGATAAA 57.015 33.333 20.43 0.00 0.00 1.40
2382 2912 6.589523 CCCATCTAGATATGAAAGAAGCTTCG 59.410 42.308 20.43 2.24 0.00 3.79
2410 2940 8.818057 CACCTCAAACGTAATAAGAATTAGAGG 58.182 37.037 0.00 0.00 39.10 3.69
2419 2949 5.997385 ACAAAGCACCTCAAACGTAATAAG 58.003 37.500 0.00 0.00 0.00 1.73
2475 3005 9.314321 TCCTAAAATTAGTATCTGCGAAGAAAG 57.686 33.333 0.00 0.00 0.00 2.62
2486 3016 9.841295 TTACATGTGGGTCCTAAAATTAGTATC 57.159 33.333 9.11 0.00 0.00 2.24
2501 3031 1.003580 CTGAGTGCCTTACATGTGGGT 59.996 52.381 9.11 0.00 0.00 4.51
2509 3039 1.677217 CCTTGCCTCTGAGTGCCTTAC 60.677 57.143 13.24 0.00 0.00 2.34
2522 3052 4.404098 CCGTTACCCGCCTTGCCT 62.404 66.667 0.00 0.00 34.38 4.75
2525 3055 1.448365 GTACCCGTTACCCGCCTTG 60.448 63.158 0.00 0.00 34.38 3.61
2529 3059 4.512961 CCCGTACCCGTTACCCGC 62.513 72.222 0.00 0.00 34.38 6.13
2538 3068 5.163437 GGATGAGATATCATTACCCGTACCC 60.163 48.000 3.97 0.00 0.00 3.69
2545 3075 8.303156 CGGATATGAGGATGAGATATCATTACC 58.697 40.741 3.97 2.17 0.00 2.85
2561 3091 1.546476 GTGGCTAGGACGGATATGAGG 59.454 57.143 0.00 0.00 0.00 3.86
2563 3093 2.677542 AGTGGCTAGGACGGATATGA 57.322 50.000 0.00 0.00 0.00 2.15
2591 3121 1.065709 GGAAAGCCGTTGGGTCAGATA 60.066 52.381 0.00 0.00 34.97 1.98
2599 3129 3.361977 CCACGGGAAAGCCGTTGG 61.362 66.667 0.00 0.00 42.19 3.77
2604 3134 2.757980 TTAGTGCCCACGGGAAAGCC 62.758 60.000 6.21 0.00 37.50 4.35
2609 3139 0.250553 CAGTTTTAGTGCCCACGGGA 60.251 55.000 6.21 0.00 37.50 5.14
2620 3150 1.065418 ACGAGGATGGGGCAGTTTTAG 60.065 52.381 0.00 0.00 0.00 1.85
2642 3172 4.562963 CCGTGGGTAATTCCTCTATTAGGC 60.563 50.000 0.00 0.00 46.10 3.93
2644 3174 4.020485 CCCCGTGGGTAATTCCTCTATTAG 60.020 50.000 3.83 0.00 38.25 1.73
2646 3176 2.709397 CCCCGTGGGTAATTCCTCTATT 59.291 50.000 3.83 0.00 38.25 1.73
2655 3185 2.508928 CGCATCCCCGTGGGTAAT 59.491 61.111 3.83 0.00 44.74 1.89
2663 3193 2.295472 TAACCGTTACCGCATCCCCG 62.295 60.000 0.00 0.00 0.00 5.73
2677 3208 3.006940 TGAAGCTAGCAATGGTTAACCG 58.993 45.455 18.83 6.89 39.43 4.44
2678 3209 4.459337 ACTTGAAGCTAGCAATGGTTAACC 59.541 41.667 18.27 18.27 0.00 2.85
2691 3222 3.748048 GCAGTCAATCACACTTGAAGCTA 59.252 43.478 0.00 0.00 36.92 3.32
2697 3228 3.976793 ACAAGCAGTCAATCACACTTG 57.023 42.857 0.00 0.00 42.79 3.16
2702 3233 4.494350 ACATCAACAAGCAGTCAATCAC 57.506 40.909 0.00 0.00 0.00 3.06
2725 3256 1.134491 GTAGGAGCCGCCATGTAAACT 60.134 52.381 0.00 0.00 40.02 2.66
2736 3267 2.365617 ACCATGACTATTGTAGGAGCCG 59.634 50.000 0.00 0.00 0.00 5.52
2793 3324 9.764363 GTGTGATACAGTAAAAGGATATCATCA 57.236 33.333 4.83 0.00 35.37 3.07
2794 3325 9.988815 AGTGTGATACAGTAAAAGGATATCATC 57.011 33.333 4.83 0.00 35.37 2.92
2800 3331 9.696572 TCTACTAGTGTGATACAGTAAAAGGAT 57.303 33.333 5.39 0.00 33.97 3.24
2801 3332 9.524496 TTCTACTAGTGTGATACAGTAAAAGGA 57.476 33.333 5.39 0.00 33.97 3.36
2806 3337 9.616634 CGTTTTTCTACTAGTGTGATACAGTAA 57.383 33.333 5.39 0.00 33.97 2.24
2807 3338 9.002600 TCGTTTTTCTACTAGTGTGATACAGTA 57.997 33.333 5.39 0.00 33.15 2.74
2808 3339 7.806960 GTCGTTTTTCTACTAGTGTGATACAGT 59.193 37.037 5.39 0.00 35.61 3.55
2809 3340 8.021973 AGTCGTTTTTCTACTAGTGTGATACAG 58.978 37.037 5.39 0.00 0.00 2.74
2810 3341 7.879070 AGTCGTTTTTCTACTAGTGTGATACA 58.121 34.615 5.39 0.00 0.00 2.29
2811 3342 8.739649 AAGTCGTTTTTCTACTAGTGTGATAC 57.260 34.615 5.39 2.83 0.00 2.24
2812 3343 9.754382 AAAAGTCGTTTTTCTACTAGTGTGATA 57.246 29.630 5.39 0.00 33.79 2.15
2813 3344 8.658499 AAAAGTCGTTTTTCTACTAGTGTGAT 57.342 30.769 5.39 0.00 33.79 3.06
2814 3345 9.241317 CTAAAAGTCGTTTTTCTACTAGTGTGA 57.759 33.333 5.39 0.71 39.61 3.58
2815 3346 9.028185 ACTAAAAGTCGTTTTTCTACTAGTGTG 57.972 33.333 5.39 0.00 39.61 3.82
2818 3349 9.684448 GGTACTAAAAGTCGTTTTTCTACTAGT 57.316 33.333 0.00 0.00 39.61 2.57
2819 3350 8.844690 CGGTACTAAAAGTCGTTTTTCTACTAG 58.155 37.037 0.00 0.00 39.61 2.57
2820 3351 7.807907 CCGGTACTAAAAGTCGTTTTTCTACTA 59.192 37.037 0.00 0.00 39.61 1.82
2821 3352 6.642540 CCGGTACTAAAAGTCGTTTTTCTACT 59.357 38.462 0.00 0.00 39.61 2.57
2822 3353 6.420903 ACCGGTACTAAAAGTCGTTTTTCTAC 59.579 38.462 4.49 5.82 39.61 2.59
2823 3354 6.512297 ACCGGTACTAAAAGTCGTTTTTCTA 58.488 36.000 4.49 0.00 39.61 2.10
2824 3355 5.359756 ACCGGTACTAAAAGTCGTTTTTCT 58.640 37.500 4.49 0.00 39.61 2.52
2825 3356 5.657470 ACCGGTACTAAAAGTCGTTTTTC 57.343 39.130 4.49 0.00 39.61 2.29
2826 3357 6.128035 ACAAACCGGTACTAAAAGTCGTTTTT 60.128 34.615 8.00 0.00 41.68 1.94
2827 3358 5.353956 ACAAACCGGTACTAAAAGTCGTTTT 59.646 36.000 8.00 0.00 39.31 2.43
2828 3359 4.875536 ACAAACCGGTACTAAAAGTCGTTT 59.124 37.500 8.00 0.00 0.00 3.60
2829 3360 4.441792 ACAAACCGGTACTAAAAGTCGTT 58.558 39.130 8.00 0.00 0.00 3.85
2830 3361 4.058721 ACAAACCGGTACTAAAAGTCGT 57.941 40.909 8.00 0.00 0.00 4.34
2831 3362 5.119125 CCTTACAAACCGGTACTAAAAGTCG 59.881 44.000 8.00 0.00 0.00 4.18
2832 3363 6.146184 GTCCTTACAAACCGGTACTAAAAGTC 59.854 42.308 8.00 1.23 0.00 3.01
2833 3364 5.991606 GTCCTTACAAACCGGTACTAAAAGT 59.008 40.000 8.00 1.49 0.00 2.66
2834 3365 5.409520 GGTCCTTACAAACCGGTACTAAAAG 59.590 44.000 8.00 8.52 0.00 2.27
2835 3366 5.071653 AGGTCCTTACAAACCGGTACTAAAA 59.928 40.000 8.00 0.00 40.63 1.52
2836 3367 4.592778 AGGTCCTTACAAACCGGTACTAAA 59.407 41.667 8.00 0.00 40.63 1.85
2837 3368 4.159557 AGGTCCTTACAAACCGGTACTAA 58.840 43.478 8.00 2.82 40.63 2.24
2838 3369 3.778265 AGGTCCTTACAAACCGGTACTA 58.222 45.455 8.00 0.00 40.63 1.82
2839 3370 2.613129 AGGTCCTTACAAACCGGTACT 58.387 47.619 8.00 0.00 40.63 2.73
2840 3371 3.407424 AAGGTCCTTACAAACCGGTAC 57.593 47.619 8.00 0.00 40.63 3.34
2841 3372 4.592778 ACTAAAGGTCCTTACAAACCGGTA 59.407 41.667 8.00 0.00 40.63 4.02
2842 3373 3.392285 ACTAAAGGTCCTTACAAACCGGT 59.608 43.478 0.00 0.00 40.63 5.28
2843 3374 4.011966 ACTAAAGGTCCTTACAAACCGG 57.988 45.455 4.04 0.00 40.63 5.28
2844 3375 4.931601 GGTACTAAAGGTCCTTACAAACCG 59.068 45.833 4.04 0.00 40.63 4.44
2845 3376 4.931601 CGGTACTAAAGGTCCTTACAAACC 59.068 45.833 4.04 9.80 35.69 3.27
2846 3377 4.931601 CCGGTACTAAAGGTCCTTACAAAC 59.068 45.833 4.04 1.86 0.00 2.93
2847 3378 4.592778 ACCGGTACTAAAGGTCCTTACAAA 59.407 41.667 4.49 0.00 31.69 2.83
2848 3379 4.159557 ACCGGTACTAAAGGTCCTTACAA 58.840 43.478 4.49 0.00 31.69 2.41
2849 3380 3.778265 ACCGGTACTAAAGGTCCTTACA 58.222 45.455 4.49 0.00 31.69 2.41
2850 3381 4.464244 AGAACCGGTACTAAAGGTCCTTAC 59.536 45.833 8.00 0.00 37.26 2.34
2851 3382 4.463891 CAGAACCGGTACTAAAGGTCCTTA 59.536 45.833 8.00 0.00 37.26 2.69
2852 3383 3.260128 CAGAACCGGTACTAAAGGTCCTT 59.740 47.826 8.00 0.00 37.26 3.36
2853 3384 2.830321 CAGAACCGGTACTAAAGGTCCT 59.170 50.000 8.00 0.00 37.26 3.85
2854 3385 2.827921 TCAGAACCGGTACTAAAGGTCC 59.172 50.000 8.00 0.00 37.26 4.46
2855 3386 4.525912 TTCAGAACCGGTACTAAAGGTC 57.474 45.455 8.00 0.00 37.26 3.85
2856 3387 4.503817 GGTTTCAGAACCGGTACTAAAGGT 60.504 45.833 8.00 0.00 45.43 3.50
2857 3388 3.999001 GGTTTCAGAACCGGTACTAAAGG 59.001 47.826 8.00 0.00 45.43 3.11
2869 3400 3.135994 TCTTTAGTGCCGGTTTCAGAAC 58.864 45.455 1.90 0.00 34.96 3.01
2870 3401 3.181458 ACTCTTTAGTGCCGGTTTCAGAA 60.181 43.478 1.90 0.00 33.57 3.02
2871 3402 2.367567 ACTCTTTAGTGCCGGTTTCAGA 59.632 45.455 1.90 0.00 33.57 3.27
2872 3403 2.480419 CACTCTTTAGTGCCGGTTTCAG 59.520 50.000 1.90 0.00 46.28 3.02
2873 3404 2.489971 CACTCTTTAGTGCCGGTTTCA 58.510 47.619 1.90 0.00 46.28 2.69
2881 3412 8.959287 GACCTTTAGTCCCCACTCTTTAGTGC 62.959 50.000 0.00 0.00 44.38 4.40
2882 3413 5.569026 GACCTTTAGTCCCCACTCTTTAGTG 60.569 48.000 0.00 0.00 44.83 2.74
2883 3414 4.500452 ACCTTTAGTCCCCACTCTTTAGT 58.500 43.478 0.00 0.00 35.91 2.24
2884 3415 5.087391 GACCTTTAGTCCCCACTCTTTAG 57.913 47.826 0.00 0.00 39.84 1.85
2912 3443 1.202769 TGAACCGGGACTAAAGGGGG 61.203 60.000 6.32 0.00 0.00 5.40
2913 3444 0.694196 TTGAACCGGGACTAAAGGGG 59.306 55.000 6.32 0.00 0.00 4.79
2914 3445 1.072648 TGTTGAACCGGGACTAAAGGG 59.927 52.381 6.32 0.00 0.00 3.95
2915 3446 2.148768 GTGTTGAACCGGGACTAAAGG 58.851 52.381 6.32 0.00 0.00 3.11
2916 3447 1.796459 CGTGTTGAACCGGGACTAAAG 59.204 52.381 6.32 0.00 0.00 1.85
2917 3448 1.411977 TCGTGTTGAACCGGGACTAAA 59.588 47.619 6.32 0.00 0.00 1.85
2918 3449 1.039068 TCGTGTTGAACCGGGACTAA 58.961 50.000 6.32 0.00 0.00 2.24
2919 3450 1.039068 TTCGTGTTGAACCGGGACTA 58.961 50.000 6.32 0.00 0.00 2.59
2920 3451 1.824658 TTCGTGTTGAACCGGGACT 59.175 52.632 6.32 0.00 0.00 3.85
2921 3452 4.442018 TTCGTGTTGAACCGGGAC 57.558 55.556 6.32 0.00 0.00 4.46
2928 3459 1.227615 GGTCCCGGTTCGTGTTGAA 60.228 57.895 0.00 0.00 0.00 2.69
2929 3460 1.969200 TTGGTCCCGGTTCGTGTTGA 61.969 55.000 0.00 0.00 0.00 3.18
2930 3461 1.096386 TTTGGTCCCGGTTCGTGTTG 61.096 55.000 0.00 0.00 0.00 3.33
2931 3462 0.816421 CTTTGGTCCCGGTTCGTGTT 60.816 55.000 0.00 0.00 0.00 3.32
2932 3463 1.227734 CTTTGGTCCCGGTTCGTGT 60.228 57.895 0.00 0.00 0.00 4.49
2933 3464 1.964373 CCTTTGGTCCCGGTTCGTG 60.964 63.158 0.00 0.00 0.00 4.35
2934 3465 2.428622 CCTTTGGTCCCGGTTCGT 59.571 61.111 0.00 0.00 0.00 3.85
2935 3466 3.053896 GCCTTTGGTCCCGGTTCG 61.054 66.667 0.00 0.00 0.00 3.95
2936 3467 2.675423 GGCCTTTGGTCCCGGTTC 60.675 66.667 0.00 0.00 0.00 3.62
2937 3468 4.295199 GGGCCTTTGGTCCCGGTT 62.295 66.667 0.84 0.00 42.67 4.44
2943 3474 2.983592 CGTGGTGGGCCTTTGGTC 60.984 66.667 4.53 0.00 35.27 4.02
2944 3475 3.816090 ACGTGGTGGGCCTTTGGT 61.816 61.111 4.53 0.00 35.27 3.67
2945 3476 3.294493 CACGTGGTGGGCCTTTGG 61.294 66.667 7.95 0.00 35.27 3.28
2973 3504 4.436998 GTCCTCCAGACCACGGCG 62.437 72.222 4.80 4.80 39.84 6.46
2988 3519 0.689055 ACCAACCGGGACTAAAGGTC 59.311 55.000 6.32 0.00 43.79 3.85
2989 3520 2.028561 TACCAACCGGGACTAAAGGT 57.971 50.000 6.32 5.18 41.15 3.50
2990 3521 2.355412 CCTTACCAACCGGGACTAAAGG 60.355 54.545 6.32 9.55 41.15 3.11
2991 3522 2.568509 TCCTTACCAACCGGGACTAAAG 59.431 50.000 6.32 3.70 41.15 1.85
2992 3523 2.618794 TCCTTACCAACCGGGACTAAA 58.381 47.619 6.32 0.00 41.15 1.85
2993 3524 2.323999 TCCTTACCAACCGGGACTAA 57.676 50.000 6.32 0.00 41.15 2.24
2994 3525 2.555732 ATCCTTACCAACCGGGACTA 57.444 50.000 6.32 0.00 41.15 2.59
2995 3526 1.665137 AATCCTTACCAACCGGGACT 58.335 50.000 6.32 0.00 41.15 3.85
2996 3527 2.502142 AAATCCTTACCAACCGGGAC 57.498 50.000 6.32 0.00 41.15 4.46
2997 3528 3.529216 AAAAATCCTTACCAACCGGGA 57.471 42.857 6.32 0.00 41.15 5.14
3022 3553 8.604890 CGGGCTGTTTTTACTTTATTTCAAAAA 58.395 29.630 0.00 0.00 0.00 1.94
3023 3554 7.254488 GCGGGCTGTTTTTACTTTATTTCAAAA 60.254 33.333 0.00 0.00 0.00 2.44
3024 3555 6.201234 GCGGGCTGTTTTTACTTTATTTCAAA 59.799 34.615 0.00 0.00 0.00 2.69
3025 3556 5.692654 GCGGGCTGTTTTTACTTTATTTCAA 59.307 36.000 0.00 0.00 0.00 2.69
3026 3557 5.224135 GCGGGCTGTTTTTACTTTATTTCA 58.776 37.500 0.00 0.00 0.00 2.69
3027 3558 4.624024 GGCGGGCTGTTTTTACTTTATTTC 59.376 41.667 0.00 0.00 0.00 2.17
3028 3559 4.282449 AGGCGGGCTGTTTTTACTTTATTT 59.718 37.500 2.09 0.00 0.00 1.40
3029 3560 3.830178 AGGCGGGCTGTTTTTACTTTATT 59.170 39.130 2.09 0.00 0.00 1.40
3030 3561 3.427573 AGGCGGGCTGTTTTTACTTTAT 58.572 40.909 2.09 0.00 0.00 1.40
3031 3562 2.866351 AGGCGGGCTGTTTTTACTTTA 58.134 42.857 2.09 0.00 0.00 1.85
3032 3563 1.699730 AGGCGGGCTGTTTTTACTTT 58.300 45.000 2.09 0.00 0.00 2.66
3033 3564 2.156917 GTAGGCGGGCTGTTTTTACTT 58.843 47.619 15.11 0.00 0.00 2.24
3034 3565 1.350019 AGTAGGCGGGCTGTTTTTACT 59.650 47.619 15.11 5.45 0.00 2.24
3035 3566 1.467342 CAGTAGGCGGGCTGTTTTTAC 59.533 52.381 15.11 2.95 0.00 2.01
3036 3567 1.612199 CCAGTAGGCGGGCTGTTTTTA 60.612 52.381 15.11 0.00 0.00 1.52
3037 3568 0.893727 CCAGTAGGCGGGCTGTTTTT 60.894 55.000 15.11 0.00 0.00 1.94
3038 3569 1.303317 CCAGTAGGCGGGCTGTTTT 60.303 57.895 15.11 0.00 0.00 2.43
3039 3570 2.351276 CCAGTAGGCGGGCTGTTT 59.649 61.111 15.11 0.00 0.00 2.83
3040 3571 3.717294 CCCAGTAGGCGGGCTGTT 61.717 66.667 15.11 0.00 36.72 3.16
3064 3595 1.985447 TTCTAGTCGTACGCAGGCCG 61.985 60.000 11.24 0.00 44.21 6.13
3065 3596 0.171903 TTTCTAGTCGTACGCAGGCC 59.828 55.000 11.24 0.00 0.00 5.19
3066 3597 1.266466 GTTTCTAGTCGTACGCAGGC 58.734 55.000 11.24 0.60 0.00 4.85
3067 3598 1.468736 GGGTTTCTAGTCGTACGCAGG 60.469 57.143 11.24 0.77 0.00 4.85
3068 3599 1.200716 TGGGTTTCTAGTCGTACGCAG 59.799 52.381 11.24 7.67 0.00 5.18
3069 3600 1.246649 TGGGTTTCTAGTCGTACGCA 58.753 50.000 11.24 0.00 0.00 5.24
3070 3601 2.352503 TTGGGTTTCTAGTCGTACGC 57.647 50.000 11.24 5.97 0.00 4.42
3071 3602 4.096081 AGAGATTGGGTTTCTAGTCGTACG 59.904 45.833 9.53 9.53 0.00 3.67
3072 3603 5.579564 AGAGATTGGGTTTCTAGTCGTAC 57.420 43.478 0.00 0.00 0.00 3.67
3073 3604 6.421485 ACTAGAGATTGGGTTTCTAGTCGTA 58.579 40.000 7.41 0.00 46.49 3.43
3074 3605 5.262804 ACTAGAGATTGGGTTTCTAGTCGT 58.737 41.667 7.41 0.00 46.49 4.34
3075 3606 5.838531 ACTAGAGATTGGGTTTCTAGTCG 57.161 43.478 7.41 0.00 46.49 4.18
3086 3617 1.133976 CCTGGCCCAACTAGAGATTGG 60.134 57.143 0.00 0.00 45.36 3.16
3087 3618 1.839994 TCCTGGCCCAACTAGAGATTG 59.160 52.381 0.00 0.00 0.00 2.67
3088 3619 2.270434 TCCTGGCCCAACTAGAGATT 57.730 50.000 0.00 0.00 0.00 2.40
3089 3620 2.053244 CATCCTGGCCCAACTAGAGAT 58.947 52.381 0.00 0.00 0.00 2.75
3090 3621 1.500474 CATCCTGGCCCAACTAGAGA 58.500 55.000 0.00 0.00 0.00 3.10
3091 3622 0.179034 GCATCCTGGCCCAACTAGAG 60.179 60.000 0.00 0.00 0.00 2.43
3092 3623 0.913934 TGCATCCTGGCCCAACTAGA 60.914 55.000 0.00 0.00 0.00 2.43
3093 3624 0.465097 CTGCATCCTGGCCCAACTAG 60.465 60.000 0.00 0.00 0.00 2.57
3094 3625 1.609239 CTGCATCCTGGCCCAACTA 59.391 57.895 0.00 0.00 0.00 2.24
3095 3626 2.357836 CTGCATCCTGGCCCAACT 59.642 61.111 0.00 0.00 0.00 3.16
3096 3627 2.757099 CCTGCATCCTGGCCCAAC 60.757 66.667 0.00 0.00 0.00 3.77
3097 3628 4.764771 GCCTGCATCCTGGCCCAA 62.765 66.667 0.00 0.00 46.88 4.12
3102 3633 1.228367 GTATGGGCCTGCATCCTGG 60.228 63.158 4.53 0.00 0.00 4.45
3103 3634 1.598962 CGTATGGGCCTGCATCCTG 60.599 63.158 4.53 0.00 0.00 3.86
3104 3635 2.822637 CCGTATGGGCCTGCATCCT 61.823 63.158 4.53 0.00 0.00 3.24
3105 3636 2.281761 CCGTATGGGCCTGCATCC 60.282 66.667 4.53 0.00 0.00 3.51
3123 3654 2.603008 CCTGTGGGGCCTATTGGG 59.397 66.667 0.84 0.00 38.36 4.12
3134 3665 1.347707 TGCAAGTCTTCTACCCTGTGG 59.652 52.381 0.00 0.00 37.80 4.17
3135 3666 2.839486 TGCAAGTCTTCTACCCTGTG 57.161 50.000 0.00 0.00 0.00 3.66
3136 3667 4.080863 CCTATTGCAAGTCTTCTACCCTGT 60.081 45.833 4.94 0.00 0.00 4.00
3137 3668 4.446371 CCTATTGCAAGTCTTCTACCCTG 58.554 47.826 4.94 0.00 0.00 4.45
3138 3669 3.118223 GCCTATTGCAAGTCTTCTACCCT 60.118 47.826 4.94 0.00 40.77 4.34
3139 3670 3.206964 GCCTATTGCAAGTCTTCTACCC 58.793 50.000 4.94 0.00 40.77 3.69
3140 3671 3.206964 GGCCTATTGCAAGTCTTCTACC 58.793 50.000 4.94 0.00 43.89 3.18
3141 3672 3.206964 GGGCCTATTGCAAGTCTTCTAC 58.793 50.000 4.94 0.00 43.89 2.59
3142 3673 2.843730 TGGGCCTATTGCAAGTCTTCTA 59.156 45.455 4.94 0.00 43.89 2.10
3143 3674 1.635487 TGGGCCTATTGCAAGTCTTCT 59.365 47.619 4.94 0.00 43.89 2.85
3144 3675 1.745653 GTGGGCCTATTGCAAGTCTTC 59.254 52.381 4.94 0.00 43.89 2.87
3145 3676 1.075374 TGTGGGCCTATTGCAAGTCTT 59.925 47.619 4.94 0.00 43.89 3.01
3146 3677 0.698238 TGTGGGCCTATTGCAAGTCT 59.302 50.000 4.94 0.00 43.89 3.24
3147 3678 1.544724 TTGTGGGCCTATTGCAAGTC 58.455 50.000 4.94 0.00 43.89 3.01
3148 3679 1.895131 CTTTGTGGGCCTATTGCAAGT 59.105 47.619 4.94 0.00 43.89 3.16
3149 3680 1.205417 CCTTTGTGGGCCTATTGCAAG 59.795 52.381 4.94 0.00 43.89 4.01
3150 3681 1.265236 CCTTTGTGGGCCTATTGCAA 58.735 50.000 4.53 0.00 43.89 4.08
3151 3682 1.257055 GCCTTTGTGGGCCTATTGCA 61.257 55.000 4.53 0.00 45.92 4.08
3152 3683 1.517361 GCCTTTGTGGGCCTATTGC 59.483 57.895 4.53 0.00 45.92 3.56
3160 3691 0.038166 TCTAAGCAGGCCTTTGTGGG 59.962 55.000 0.00 0.00 34.95 4.61
3161 3692 1.003580 TCTCTAAGCAGGCCTTTGTGG 59.996 52.381 0.00 0.00 34.95 4.17
3162 3693 2.354259 CTCTCTAAGCAGGCCTTTGTG 58.646 52.381 0.00 0.00 34.95 3.33
3163 3694 1.280421 CCTCTCTAAGCAGGCCTTTGT 59.720 52.381 0.00 0.00 34.95 2.83
3164 3695 1.556911 TCCTCTCTAAGCAGGCCTTTG 59.443 52.381 0.00 0.00 34.95 2.77
3165 3696 1.836802 CTCCTCTCTAAGCAGGCCTTT 59.163 52.381 0.00 0.00 34.95 3.11
3166 3697 1.494960 CTCCTCTCTAAGCAGGCCTT 58.505 55.000 0.00 0.00 37.57 4.35
3167 3698 1.048160 GCTCCTCTCTAAGCAGGCCT 61.048 60.000 0.00 0.00 38.42 5.19
3168 3699 1.048160 AGCTCCTCTCTAAGCAGGCC 61.048 60.000 0.00 0.00 41.06 5.19
3169 3700 0.389025 GAGCTCCTCTCTAAGCAGGC 59.611 60.000 0.87 0.00 41.06 4.85
3170 3701 0.667993 CGAGCTCCTCTCTAAGCAGG 59.332 60.000 8.47 0.00 41.06 4.85
3171 3702 1.333619 GTCGAGCTCCTCTCTAAGCAG 59.666 57.143 8.47 0.00 41.06 4.24
3172 3703 1.340114 TGTCGAGCTCCTCTCTAAGCA 60.340 52.381 8.47 0.00 41.06 3.91
3173 3704 1.064952 GTGTCGAGCTCCTCTCTAAGC 59.935 57.143 8.47 0.00 39.70 3.09
3174 3705 1.329292 CGTGTCGAGCTCCTCTCTAAG 59.671 57.143 8.47 0.00 39.70 2.18
3175 3706 1.370609 CGTGTCGAGCTCCTCTCTAA 58.629 55.000 8.47 0.00 39.70 2.10
3176 3707 0.462225 CCGTGTCGAGCTCCTCTCTA 60.462 60.000 8.47 0.00 39.70 2.43
3177 3708 1.747367 CCGTGTCGAGCTCCTCTCT 60.747 63.158 8.47 0.00 39.70 3.10
3178 3709 0.743701 TACCGTGTCGAGCTCCTCTC 60.744 60.000 8.47 1.77 38.47 3.20
3179 3710 0.745128 CTACCGTGTCGAGCTCCTCT 60.745 60.000 8.47 0.00 0.00 3.69
3180 3711 1.722677 CTACCGTGTCGAGCTCCTC 59.277 63.158 8.47 1.83 0.00 3.71
3181 3712 2.408241 GCTACCGTGTCGAGCTCCT 61.408 63.158 8.47 0.00 33.28 3.69
3182 3713 2.102553 GCTACCGTGTCGAGCTCC 59.897 66.667 8.47 0.00 33.28 4.70
3183 3714 2.102553 GGCTACCGTGTCGAGCTC 59.897 66.667 2.73 2.73 36.43 4.09
3184 3715 3.812019 CGGCTACCGTGTCGAGCT 61.812 66.667 0.00 0.00 42.73 4.09
3199 3730 1.153127 TTTATAAGCCCCACCGCGG 60.153 57.895 26.86 26.86 0.00 6.46
3200 3731 1.441732 GGTTTATAAGCCCCACCGCG 61.442 60.000 7.10 0.00 0.00 6.46
3201 3732 1.441732 CGGTTTATAAGCCCCACCGC 61.442 60.000 12.28 0.00 43.58 5.68
3202 3733 2.697819 CGGTTTATAAGCCCCACCG 58.302 57.895 12.28 11.29 44.07 4.94
3203 3734 0.256752 ACCGGTTTATAAGCCCCACC 59.743 55.000 12.28 3.29 0.00 4.61
3204 3735 1.385528 CACCGGTTTATAAGCCCCAC 58.614 55.000 2.97 0.00 0.00 4.61
3205 3736 0.394625 GCACCGGTTTATAAGCCCCA 60.395 55.000 2.97 0.00 0.00 4.96
3206 3737 1.441732 CGCACCGGTTTATAAGCCCC 61.442 60.000 2.97 1.05 0.00 5.80
3207 3738 0.462403 TCGCACCGGTTTATAAGCCC 60.462 55.000 2.97 3.38 0.00 5.19
3208 3739 1.063027 GTTCGCACCGGTTTATAAGCC 59.937 52.381 2.97 8.25 0.00 4.35
3209 3740 2.004733 AGTTCGCACCGGTTTATAAGC 58.995 47.619 2.97 2.58 0.00 3.09
3210 3741 2.606272 GGAGTTCGCACCGGTTTATAAG 59.394 50.000 2.97 0.00 0.00 1.73
3211 3742 2.234414 AGGAGTTCGCACCGGTTTATAA 59.766 45.455 2.97 0.00 32.82 0.98
3212 3743 1.826720 AGGAGTTCGCACCGGTTTATA 59.173 47.619 2.97 0.00 32.82 0.98
3213 3744 0.611714 AGGAGTTCGCACCGGTTTAT 59.388 50.000 2.97 0.00 32.82 1.40
3214 3745 0.037975 GAGGAGTTCGCACCGGTTTA 60.038 55.000 2.97 0.00 32.82 2.01
3215 3746 1.301479 GAGGAGTTCGCACCGGTTT 60.301 57.895 2.97 0.00 32.82 3.27
3216 3747 2.156051 GAGAGGAGTTCGCACCGGTT 62.156 60.000 2.97 0.00 32.82 4.44
3217 3748 2.600769 AGAGGAGTTCGCACCGGT 60.601 61.111 0.00 0.00 32.82 5.28
3218 3749 2.154798 TTGAGAGGAGTTCGCACCGG 62.155 60.000 0.00 0.00 35.21 5.28
3219 3750 1.289066 TTGAGAGGAGTTCGCACCG 59.711 57.895 0.00 0.00 35.21 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.