Multiple sequence alignment - TraesCS2A01G539800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G539800 chr2A 100.000 4625 0 0 1 4625 752096344 752091720 0.000000e+00 8541.0
1 TraesCS2A01G539800 chr2A 92.035 452 32 3 2964 3415 749651398 749651845 2.350000e-177 632.0
2 TraesCS2A01G539800 chr2D 88.036 2240 164 48 643 2820 620513553 620511356 0.000000e+00 2556.0
3 TraesCS2A01G539800 chr2D 92.881 913 52 12 2971 3879 620511348 620510445 0.000000e+00 1314.0
4 TraesCS2A01G539800 chr2D 87.085 542 61 5 169 709 620524002 620523469 5.120000e-169 604.0
5 TraesCS2A01G539800 chr2D 87.421 318 28 6 4318 4625 620509094 620508779 5.690000e-94 355.0
6 TraesCS2A01G539800 chr2D 90.260 154 15 0 1 154 620524139 620523986 7.850000e-48 202.0
7 TraesCS2A01G539800 chr2D 89.796 147 8 3 3886 4028 620510284 620510141 1.020000e-41 182.0
8 TraesCS2A01G539800 chr2D 85.256 156 23 0 534 689 387193847 387193692 1.330000e-35 161.0
9 TraesCS2A01G539800 chr2D 81.977 172 26 5 525 693 602699757 602699588 1.730000e-29 141.0
10 TraesCS2A01G539800 chr2B 87.327 1515 97 51 717 2204 760893077 760891631 0.000000e+00 1646.0
11 TraesCS2A01G539800 chr2B 89.945 905 63 15 2987 3878 760890925 760890036 0.000000e+00 1142.0
12 TraesCS2A01G539800 chr2B 86.578 678 71 13 2117 2779 755329804 755330476 0.000000e+00 730.0
13 TraesCS2A01G539800 chr2B 92.035 452 31 3 2964 3415 755330532 755330978 8.440000e-177 630.0
14 TraesCS2A01G539800 chr2B 86.412 471 41 14 4164 4625 760884722 760884266 1.160000e-135 494.0
15 TraesCS2A01G539800 chr2B 83.636 165 25 2 535 697 798146682 798146518 2.230000e-33 154.0
16 TraesCS2A01G539800 chr2B 82.424 165 28 1 522 686 740563407 740563570 4.820000e-30 143.0
17 TraesCS2A01G539800 chr6D 85.221 1130 103 33 1677 2748 68973807 68974930 0.000000e+00 1103.0
18 TraesCS2A01G539800 chr7D 86.075 991 74 28 1253 2208 600062521 600063482 0.000000e+00 1007.0
19 TraesCS2A01G539800 chr7D 87.676 641 53 11 2205 2819 600063510 600064150 0.000000e+00 723.0
20 TraesCS2A01G539800 chr7D 82.036 167 29 1 524 690 51891683 51891518 1.730000e-29 141.0
21 TraesCS2A01G539800 chr7D 100.000 30 0 0 4085 4114 54541194 54541223 6.460000e-04 56.5
22 TraesCS2A01G539800 chr7D 100.000 29 0 0 4085 4113 5033940 5033968 2.000000e-03 54.7
23 TraesCS2A01G539800 chr1D 85.398 993 78 30 1253 2208 96036534 96035572 0.000000e+00 968.0
24 TraesCS2A01G539800 chr1D 84.763 991 86 29 1253 2208 64335501 64336461 0.000000e+00 933.0
25 TraesCS2A01G539800 chr1D 86.885 732 63 19 2117 2819 439403976 439404703 0.000000e+00 789.0
26 TraesCS2A01G539800 chr1D 87.944 647 45 13 2205 2819 96035544 96034899 0.000000e+00 732.0
27 TraesCS2A01G539800 chr1D 94.481 453 21 3 2964 3415 439404705 439405154 0.000000e+00 695.0
28 TraesCS2A01G539800 chr1D 87.858 593 51 9 2205 2779 64336489 64337078 0.000000e+00 676.0
29 TraesCS2A01G539800 chr1D 93.377 453 27 3 2964 3415 64337134 64337584 0.000000e+00 667.0
30 TraesCS2A01G539800 chr1D 93.377 453 26 4 2964 3415 96034897 96034448 0.000000e+00 667.0
31 TraesCS2A01G539800 chr1D 84.754 610 47 23 1253 1844 439402989 439403570 1.870000e-158 569.0
32 TraesCS2A01G539800 chr1D 91.803 122 8 1 2822 2941 214844615 214844736 7.960000e-38 169.0
33 TraesCS2A01G539800 chr1D 87.857 140 14 2 2814 2950 435937671 435937532 1.330000e-35 161.0
34 TraesCS2A01G539800 chr7B 84.561 991 91 27 1253 2208 6998149 6999112 0.000000e+00 926.0
35 TraesCS2A01G539800 chr7B 88.106 639 52 10 2205 2819 6999140 6999778 0.000000e+00 737.0
36 TraesCS2A01G539800 chr4A 83.603 988 83 32 1254 2208 554697772 554698713 0.000000e+00 854.0
37 TraesCS2A01G539800 chr4A 83.114 989 88 32 1253 2208 557664548 557663606 0.000000e+00 828.0
38 TraesCS2A01G539800 chr4A 87.855 634 49 13 2205 2819 557663578 557662954 0.000000e+00 719.0
39 TraesCS2A01G539800 chr4A 96.875 32 1 0 4081 4112 189614462 189614493 2.000000e-03 54.7
40 TraesCS2A01G539800 chr6A 84.819 830 69 31 1409 2208 121725818 121725016 0.000000e+00 782.0
41 TraesCS2A01G539800 chr6A 88.125 640 51 11 2205 2819 121724988 121724349 0.000000e+00 737.0
42 TraesCS2A01G539800 chr6A 92.000 125 7 2 2822 2943 559344153 559344277 6.150000e-39 172.0
43 TraesCS2A01G539800 chr1B 86.339 732 63 18 2117 2819 596175979 596176702 0.000000e+00 763.0
44 TraesCS2A01G539800 chr1B 93.819 453 23 4 2964 3415 596176704 596177152 0.000000e+00 676.0
45 TraesCS2A01G539800 chr4D 86.164 730 49 30 1508 2208 42333707 42334413 0.000000e+00 741.0
46 TraesCS2A01G539800 chr4D 87.635 647 48 14 2205 2819 42334441 42335087 0.000000e+00 723.0
47 TraesCS2A01G539800 chr4D 94.104 424 23 2 2964 3386 42335089 42335511 1.080000e-180 643.0
48 TraesCS2A01G539800 chr4D 91.129 124 9 1 2822 2943 421405112 421404989 2.860000e-37 167.0
49 TraesCS2A01G539800 chr4D 94.595 37 1 1 4085 4120 8139419 8139455 6.460000e-04 56.5
50 TraesCS2A01G539800 chr3B 84.421 751 61 19 1253 1969 774217296 774218024 0.000000e+00 688.0
51 TraesCS2A01G539800 chr3B 83.306 617 65 11 1253 1853 774402037 774402631 6.810000e-148 534.0
52 TraesCS2A01G539800 chr3B 87.413 143 14 3 2814 2954 654649878 654649738 1.330000e-35 161.0
53 TraesCS2A01G539800 chr3B 100.000 47 0 0 2774 2820 774218784 774218830 2.290000e-13 87.9
54 TraesCS2A01G539800 chr3B 96.875 32 1 0 4082 4113 708414403 708414372 2.000000e-03 54.7
55 TraesCS2A01G539800 chr3A 84.584 733 67 25 1253 1947 638864701 638863977 0.000000e+00 686.0
56 TraesCS2A01G539800 chr3A 91.935 124 8 1 2822 2943 155828566 155828443 6.150000e-39 172.0
57 TraesCS2A01G539800 chr3A 88.636 132 12 2 2822 2950 199695660 199695529 1.720000e-34 158.0
58 TraesCS2A01G539800 chr6B 85.714 679 55 15 2205 2841 144007334 144008012 0.000000e+00 678.0
59 TraesCS2A01G539800 chr6B 82.815 675 54 35 1563 2208 144006665 144007306 8.750000e-152 547.0
60 TraesCS2A01G539800 chr3D 83.422 748 61 25 1253 1965 579687288 579688007 1.820000e-178 636.0
61 TraesCS2A01G539800 chr3D 86.555 357 22 2 2489 2819 579688196 579688552 2.030000e-98 370.0
62 TraesCS2A01G539800 chr3D 82.353 170 27 3 534 703 581105312 581105146 1.340000e-30 145.0
63 TraesCS2A01G539800 chr5D 91.935 124 8 1 2822 2943 489168448 489168325 6.150000e-39 172.0
64 TraesCS2A01G539800 chr5D 91.129 124 8 2 2822 2943 12270500 12270378 1.030000e-36 165.0
65 TraesCS2A01G539800 chr5B 83.436 163 27 0 525 687 11752317 11752479 8.010000e-33 152.0
66 TraesCS2A01G539800 chr5B 100.000 30 0 0 4085 4114 2095249 2095220 6.460000e-04 56.5
67 TraesCS2A01G539800 chr7A 83.333 162 22 3 534 692 222649877 222649718 1.340000e-30 145.0
68 TraesCS2A01G539800 chr4B 100.000 30 0 0 4085 4114 531652075 531652046 6.460000e-04 56.5
69 TraesCS2A01G539800 chrUn 100.000 29 0 0 4085 4113 45725421 45725393 2.000000e-03 54.7
70 TraesCS2A01G539800 chrUn 100.000 29 0 0 4085 4113 73529918 73529890 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G539800 chr2A 752091720 752096344 4624 True 8541.000000 8541 100.000000 1 4625 1 chr2A.!!$R1 4624
1 TraesCS2A01G539800 chr2D 620508779 620513553 4774 True 1101.750000 2556 89.533500 643 4625 4 chr2D.!!$R3 3982
2 TraesCS2A01G539800 chr2D 620523469 620524139 670 True 403.000000 604 88.672500 1 709 2 chr2D.!!$R4 708
3 TraesCS2A01G539800 chr2B 760890036 760893077 3041 True 1394.000000 1646 88.636000 717 3878 2 chr2B.!!$R3 3161
4 TraesCS2A01G539800 chr2B 755329804 755330978 1174 False 680.000000 730 89.306500 2117 3415 2 chr2B.!!$F2 1298
5 TraesCS2A01G539800 chr6D 68973807 68974930 1123 False 1103.000000 1103 85.221000 1677 2748 1 chr6D.!!$F1 1071
6 TraesCS2A01G539800 chr7D 600062521 600064150 1629 False 865.000000 1007 86.875500 1253 2819 2 chr7D.!!$F3 1566
7 TraesCS2A01G539800 chr1D 96034448 96036534 2086 True 789.000000 968 88.906333 1253 3415 3 chr1D.!!$R2 2162
8 TraesCS2A01G539800 chr1D 64335501 64337584 2083 False 758.666667 933 88.666000 1253 3415 3 chr1D.!!$F2 2162
9 TraesCS2A01G539800 chr1D 439402989 439405154 2165 False 684.333333 789 88.706667 1253 3415 3 chr1D.!!$F3 2162
10 TraesCS2A01G539800 chr7B 6998149 6999778 1629 False 831.500000 926 86.333500 1253 2819 2 chr7B.!!$F1 1566
11 TraesCS2A01G539800 chr4A 554697772 554698713 941 False 854.000000 854 83.603000 1254 2208 1 chr4A.!!$F2 954
12 TraesCS2A01G539800 chr4A 557662954 557664548 1594 True 773.500000 828 85.484500 1253 2819 2 chr4A.!!$R1 1566
13 TraesCS2A01G539800 chr6A 121724349 121725818 1469 True 759.500000 782 86.472000 1409 2819 2 chr6A.!!$R1 1410
14 TraesCS2A01G539800 chr1B 596175979 596177152 1173 False 719.500000 763 90.079000 2117 3415 2 chr1B.!!$F1 1298
15 TraesCS2A01G539800 chr4D 42333707 42335511 1804 False 702.333333 741 89.301000 1508 3386 3 chr4D.!!$F2 1878
16 TraesCS2A01G539800 chr3B 774402037 774402631 594 False 534.000000 534 83.306000 1253 1853 1 chr3B.!!$F1 600
17 TraesCS2A01G539800 chr3B 774217296 774218830 1534 False 387.950000 688 92.210500 1253 2820 2 chr3B.!!$F2 1567
18 TraesCS2A01G539800 chr3A 638863977 638864701 724 True 686.000000 686 84.584000 1253 1947 1 chr3A.!!$R3 694
19 TraesCS2A01G539800 chr6B 144006665 144008012 1347 False 612.500000 678 84.264500 1563 2841 2 chr6B.!!$F1 1278
20 TraesCS2A01G539800 chr3D 579687288 579688552 1264 False 503.000000 636 84.988500 1253 2819 2 chr3D.!!$F1 1566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.118346 TCCTCTAGCCTCCCCACAAA 59.882 55.000 0.00 0.0 0.0 2.83 F
1195 1207 0.325577 TCTAGGGCCTGATCTGTGCA 60.326 55.000 18.53 0.0 0.0 4.57 F
2325 2625 1.269309 GCTACAGTGGATGTCCTAGCG 60.269 57.143 0.09 0.0 42.7 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1605 1639 1.194772 GAGCCGTTCACTGTAAACTGC 59.805 52.381 2.36 2.36 37.18 4.40 R
2502 2821 0.376152 ATTTGCTGCGAGATCAAGCG 59.624 50.000 7.72 3.60 35.87 4.68 R
4143 5434 0.179004 AACACCTCCGCACCAATCAA 60.179 50.000 0.00 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.680039 TTACCTACCCATATTATTTTGGAACG 57.320 34.615 0.00 0.00 34.81 3.95
33 34 7.594758 CCCATATTATTTTGGAACGCAATACAG 59.405 37.037 0.00 0.00 34.81 2.74
37 38 1.434555 TTGGAACGCAATACAGTCGG 58.565 50.000 0.00 0.00 0.00 4.79
78 79 5.865085 TGCATATACTCACCCAAAGATACC 58.135 41.667 0.00 0.00 0.00 2.73
79 80 4.929808 GCATATACTCACCCAAAGATACCG 59.070 45.833 0.00 0.00 0.00 4.02
82 83 1.831736 ACTCACCCAAAGATACCGAGG 59.168 52.381 0.00 0.00 0.00 4.63
87 88 1.553248 CCCAAAGATACCGAGGTGACA 59.447 52.381 4.80 0.00 0.00 3.58
106 107 9.733556 AGGTGACACAACATATTAAGATTAACA 57.266 29.630 8.08 0.00 0.00 2.41
129 130 6.094325 ACAAAATCACCACAAACTTCTCGTAA 59.906 34.615 0.00 0.00 0.00 3.18
133 134 2.735134 ACCACAAACTTCTCGTAATCGC 59.265 45.455 0.00 0.00 36.96 4.58
134 135 2.734606 CCACAAACTTCTCGTAATCGCA 59.265 45.455 0.00 0.00 36.96 5.10
154 155 0.396001 GGGAACGTCTCCTCTAGCCT 60.396 60.000 13.94 0.00 44.68 4.58
155 156 1.026584 GGAACGTCTCCTCTAGCCTC 58.973 60.000 8.87 0.00 41.61 4.70
156 157 1.026584 GAACGTCTCCTCTAGCCTCC 58.973 60.000 0.00 0.00 0.00 4.30
157 158 0.396001 AACGTCTCCTCTAGCCTCCC 60.396 60.000 0.00 0.00 0.00 4.30
158 159 1.529713 CGTCTCCTCTAGCCTCCCC 60.530 68.421 0.00 0.00 0.00 4.81
159 160 1.621377 GTCTCCTCTAGCCTCCCCA 59.379 63.158 0.00 0.00 0.00 4.96
160 161 0.757561 GTCTCCTCTAGCCTCCCCAC 60.758 65.000 0.00 0.00 0.00 4.61
161 162 1.221909 TCTCCTCTAGCCTCCCCACA 61.222 60.000 0.00 0.00 0.00 4.17
162 163 0.325671 CTCCTCTAGCCTCCCCACAA 60.326 60.000 0.00 0.00 0.00 3.33
163 164 0.118346 TCCTCTAGCCTCCCCACAAA 59.882 55.000 0.00 0.00 0.00 2.83
164 165 0.991920 CCTCTAGCCTCCCCACAAAA 59.008 55.000 0.00 0.00 0.00 2.44
165 166 1.354368 CCTCTAGCCTCCCCACAAAAA 59.646 52.381 0.00 0.00 0.00 1.94
185 186 3.764237 AAAGAACGTCTCCTTTAGCCA 57.236 42.857 8.25 0.00 31.49 4.75
198 199 3.443976 CTTTAGCCAAACAAACGTTGCT 58.556 40.909 12.42 12.42 32.29 3.91
199 200 2.483583 TAGCCAAACAAACGTTGCTG 57.516 45.000 16.25 8.39 30.68 4.41
200 201 0.814457 AGCCAAACAAACGTTGCTGA 59.186 45.000 0.00 0.00 27.78 4.26
249 251 1.819632 CACCGGTGCCAAGCCTATC 60.820 63.158 24.02 0.00 0.00 2.08
265 267 4.721776 AGCCTATCACTTAAACCCTGATGA 59.278 41.667 0.00 0.00 0.00 2.92
267 269 5.059833 CCTATCACTTAAACCCTGATGAGC 58.940 45.833 0.00 0.00 0.00 4.26
277 279 8.871629 TTAAACCCTGATGAGCTGTAAATAAA 57.128 30.769 0.00 0.00 0.00 1.40
424 426 2.823154 GGTTTTCATGGGAAATCGGTGA 59.177 45.455 0.00 0.00 42.31 4.02
427 429 5.293560 GTTTTCATGGGAAATCGGTGAAAA 58.706 37.500 7.30 7.30 42.31 2.29
438 440 1.072648 TCGGTGAAAAACCCCGAAGAT 59.927 47.619 0.00 0.00 46.91 2.40
450 452 4.037927 ACCCCGAAGATAGAGGAAAATCA 58.962 43.478 0.00 0.00 0.00 2.57
499 501 3.921677 TGTAAGGTTGGACGAATCACTC 58.078 45.455 0.00 0.00 0.00 3.51
502 504 2.248248 AGGTTGGACGAATCACTCTGA 58.752 47.619 0.00 0.00 0.00 3.27
548 550 9.768662 AGTACTCTTTTCGTTCCTAAATACAAA 57.231 29.630 0.00 0.00 0.00 2.83
585 587 6.534475 TCCACTACGGACTACATACAAAAT 57.466 37.500 0.00 0.00 39.64 1.82
586 588 6.938507 TCCACTACGGACTACATACAAAATT 58.061 36.000 0.00 0.00 39.64 1.82
587 589 7.388437 TCCACTACGGACTACATACAAAATTT 58.612 34.615 0.00 0.00 39.64 1.82
588 590 7.879160 TCCACTACGGACTACATACAAAATTTT 59.121 33.333 0.00 0.00 39.64 1.82
589 591 8.508875 CCACTACGGACTACATACAAAATTTTT 58.491 33.333 0.00 0.00 36.56 1.94
646 648 4.141937 ACATCTGTATGTAGTCCGCATTGT 60.142 41.667 0.00 0.00 44.66 2.71
657 659 6.755141 TGTAGTCCGCATTGTAATCTCTAAAC 59.245 38.462 0.00 0.00 0.00 2.01
660 662 5.006746 GTCCGCATTGTAATCTCTAAACAGG 59.993 44.000 0.00 0.00 0.00 4.00
679 681 8.570068 AAACAGGCTTATATTTAGAAACGGAA 57.430 30.769 0.00 0.00 0.00 4.30
793 795 1.807165 CTGTCATCGTCACCGGCTG 60.807 63.158 0.00 0.00 33.95 4.85
979 984 0.743345 GCCCTATATAAAGCGCCCCG 60.743 60.000 2.29 0.00 0.00 5.73
1195 1207 0.325577 TCTAGGGCCTGATCTGTGCA 60.326 55.000 18.53 0.00 0.00 4.57
1312 1329 3.097162 GATTTCCCCTCCGCCCCT 61.097 66.667 0.00 0.00 0.00 4.79
1401 1426 5.305902 TCTGGTTGTTAGTTACTGGTCATGA 59.694 40.000 0.00 0.00 0.00 3.07
1427 1452 5.163884 GGTTAGGTTGTCGATTGTTTAGCTC 60.164 44.000 0.00 0.00 0.00 4.09
1445 1470 2.356913 TGCTCGCGCAGTGCTTTA 60.357 55.556 14.33 0.00 42.25 1.85
1446 1471 2.382746 TGCTCGCGCAGTGCTTTAG 61.383 57.895 14.33 8.21 42.25 1.85
1476 1503 5.344743 TGATTGATTGGTGGAGAGTACTC 57.655 43.478 15.41 15.41 41.94 2.59
1477 1504 5.026121 TGATTGATTGGTGGAGAGTACTCT 58.974 41.667 25.44 25.44 43.78 3.24
1498 1525 8.582657 ACTCTCTACTTATGAACTGTACATGT 57.417 34.615 2.69 2.69 0.00 3.21
1499 1526 9.026121 ACTCTCTACTTATGAACTGTACATGTT 57.974 33.333 2.30 9.53 0.00 2.71
1617 1666 5.460646 CCAACCTTATTGCAGTTTACAGTG 58.539 41.667 0.00 0.00 0.00 3.66
1621 1670 5.049680 ACCTTATTGCAGTTTACAGTGAACG 60.050 40.000 0.00 0.28 32.38 3.95
1630 1679 4.689345 AGTTTACAGTGAACGGCTCATTAC 59.311 41.667 0.00 0.00 36.14 1.89
1764 1986 3.725634 AGGCATGGACTAGGACTACTTT 58.274 45.455 0.00 0.00 0.00 2.66
1795 2030 8.989131 ACATACAGTACCAACCTTATCTGTTAT 58.011 33.333 0.00 0.00 37.35 1.89
1855 2090 6.323739 GCCAACCAAATCAATAGGGAGAATTA 59.676 38.462 0.00 0.00 0.00 1.40
1891 2143 4.597507 AGTAGGAATGGTCACCTTTCTTCA 59.402 41.667 19.27 5.16 37.67 3.02
1965 2223 5.523552 GCTTTGCTGATGTTGTTTAAACCTT 59.476 36.000 15.59 0.00 0.00 3.50
1997 2255 7.871973 AGAAGCATAAAGAGTACTAGCATGATG 59.128 37.037 0.00 0.00 0.00 3.07
2005 2263 8.704849 AAGAGTACTAGCATGATGAATAGAGT 57.295 34.615 10.78 0.00 0.00 3.24
2082 2345 5.371526 CTTGGTCTATCAATGCATACTGGT 58.628 41.667 0.00 0.00 0.00 4.00
2089 2352 8.715998 GTCTATCAATGCATACTGGTAGAAATG 58.284 37.037 18.65 2.29 37.10 2.32
2201 2464 5.692115 TCATCAAGAGTGGCCTATGTTTA 57.308 39.130 3.32 0.00 0.00 2.01
2224 2520 5.620738 AGTGGTCTATCAATGCATACAGT 57.379 39.130 0.00 0.00 0.00 3.55
2225 2521 5.994250 AGTGGTCTATCAATGCATACAGTT 58.006 37.500 0.00 0.00 0.00 3.16
2292 2592 7.855904 GTGTAAACCTGATGTTCTGTGTTTTAG 59.144 37.037 0.00 0.00 35.67 1.85
2322 2622 2.388735 CTGGCTACAGTGGATGTCCTA 58.611 52.381 0.09 0.00 42.70 2.94
2325 2625 1.269309 GCTACAGTGGATGTCCTAGCG 60.269 57.143 0.09 0.00 42.70 4.26
2375 2675 6.736110 ACAACAGTTGGTTCTACTAACCTA 57.264 37.500 17.76 0.00 39.97 3.08
2380 2680 8.147244 ACAGTTGGTTCTACTAACCTATTGAT 57.853 34.615 16.37 3.52 39.97 2.57
2443 2752 6.282199 ACGTGTATATGATGGATAACCCTC 57.718 41.667 0.00 0.00 35.38 4.30
2499 2818 4.014569 TCACACATAACTAAAGCTGGCA 57.985 40.909 0.00 0.00 0.00 4.92
2502 2821 2.098117 CACATAACTAAAGCTGGCAGCC 59.902 50.000 34.33 17.49 43.77 4.85
2504 2823 1.024579 TAACTAAAGCTGGCAGCCGC 61.025 55.000 34.33 17.49 43.77 6.53
2533 2852 5.641636 TCTCGCAGCAAATATGACTTGTTTA 59.358 36.000 0.00 0.00 0.00 2.01
2636 2982 1.604308 CATGTTCCACTGGCAGGCA 60.604 57.895 20.34 9.61 0.00 4.75
2654 3000 1.771255 GCAACTATCATGGGACCCTCT 59.229 52.381 13.00 0.00 0.00 3.69
2660 3007 0.117140 TCATGGGACCCTCTGACAGT 59.883 55.000 13.00 0.00 0.00 3.55
2820 3185 0.105913 TTGGGGGTCCTCAAACAACC 60.106 55.000 0.00 0.00 0.00 3.77
2821 3186 1.289982 TGGGGGTCCTCAAACAACCA 61.290 55.000 0.00 0.00 34.62 3.67
2822 3187 0.826256 GGGGGTCCTCAAACAACCAC 60.826 60.000 0.00 0.00 35.64 4.16
2823 3188 0.185175 GGGGTCCTCAAACAACCACT 59.815 55.000 0.00 0.00 33.49 4.00
2824 3189 1.605753 GGGTCCTCAAACAACCACTC 58.394 55.000 0.00 0.00 34.62 3.51
2825 3190 1.605753 GGTCCTCAAACAACCACTCC 58.394 55.000 0.00 0.00 33.11 3.85
2826 3191 1.605753 GTCCTCAAACAACCACTCCC 58.394 55.000 0.00 0.00 0.00 4.30
2827 3192 1.143073 GTCCTCAAACAACCACTCCCT 59.857 52.381 0.00 0.00 0.00 4.20
2828 3193 1.420138 TCCTCAAACAACCACTCCCTC 59.580 52.381 0.00 0.00 0.00 4.30
2829 3194 1.421646 CCTCAAACAACCACTCCCTCT 59.578 52.381 0.00 0.00 0.00 3.69
2830 3195 2.498167 CTCAAACAACCACTCCCTCTG 58.502 52.381 0.00 0.00 0.00 3.35
2831 3196 1.843851 TCAAACAACCACTCCCTCTGT 59.156 47.619 0.00 0.00 0.00 3.41
2832 3197 2.241176 TCAAACAACCACTCCCTCTGTT 59.759 45.455 0.00 0.00 0.00 3.16
2833 3198 2.618709 CAAACAACCACTCCCTCTGTTC 59.381 50.000 0.00 0.00 30.16 3.18
2834 3199 0.765510 ACAACCACTCCCTCTGTTCC 59.234 55.000 0.00 0.00 0.00 3.62
2835 3200 1.059913 CAACCACTCCCTCTGTTCCT 58.940 55.000 0.00 0.00 0.00 3.36
2836 3201 2.257207 CAACCACTCCCTCTGTTCCTA 58.743 52.381 0.00 0.00 0.00 2.94
2837 3202 2.637872 CAACCACTCCCTCTGTTCCTAA 59.362 50.000 0.00 0.00 0.00 2.69
2838 3203 2.986050 ACCACTCCCTCTGTTCCTAAA 58.014 47.619 0.00 0.00 0.00 1.85
2839 3204 3.532102 ACCACTCCCTCTGTTCCTAAAT 58.468 45.455 0.00 0.00 0.00 1.40
2840 3205 4.695606 ACCACTCCCTCTGTTCCTAAATA 58.304 43.478 0.00 0.00 0.00 1.40
2841 3206 5.289510 ACCACTCCCTCTGTTCCTAAATAT 58.710 41.667 0.00 0.00 0.00 1.28
2842 3207 6.449956 ACCACTCCCTCTGTTCCTAAATATA 58.550 40.000 0.00 0.00 0.00 0.86
2843 3208 6.906901 ACCACTCCCTCTGTTCCTAAATATAA 59.093 38.462 0.00 0.00 0.00 0.98
2844 3209 7.071321 ACCACTCCCTCTGTTCCTAAATATAAG 59.929 40.741 0.00 0.00 0.00 1.73
2845 3210 7.071321 CCACTCCCTCTGTTCCTAAATATAAGT 59.929 40.741 0.00 0.00 0.00 2.24
2846 3211 9.144298 CACTCCCTCTGTTCCTAAATATAAGTA 57.856 37.037 0.00 0.00 0.00 2.24
2847 3212 9.900112 ACTCCCTCTGTTCCTAAATATAAGTAT 57.100 33.333 0.00 0.00 0.00 2.12
2873 3238 9.901172 TTTTTAGAGATTCCAATAAGGGACTAC 57.099 33.333 0.00 0.00 38.49 2.73
2874 3239 8.618240 TTTAGAGATTCCAATAAGGGACTACA 57.382 34.615 0.00 0.00 38.49 2.74
2875 3240 8.798975 TTAGAGATTCCAATAAGGGACTACAT 57.201 34.615 0.00 0.00 38.49 2.29
2876 3241 7.072263 AGAGATTCCAATAAGGGACTACATG 57.928 40.000 0.00 0.00 38.49 3.21
2877 3242 5.625150 AGATTCCAATAAGGGACTACATGC 58.375 41.667 0.00 0.00 38.49 4.06
2878 3243 3.469008 TCCAATAAGGGACTACATGCG 57.531 47.619 0.00 0.00 38.49 4.73
2879 3244 3.035363 TCCAATAAGGGACTACATGCGA 58.965 45.455 0.00 0.00 38.49 5.10
2880 3245 3.452990 TCCAATAAGGGACTACATGCGAA 59.547 43.478 0.00 0.00 38.49 4.70
2881 3246 3.809832 CCAATAAGGGACTACATGCGAAG 59.190 47.826 0.00 0.00 38.49 3.79
2900 3265 6.169419 CGAAGCAAAATGAGTGAATCTACA 57.831 37.500 0.00 0.00 0.00 2.74
2901 3266 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
2941 3306 6.656632 ACATCTGTATGTACTCCATAGTGG 57.343 41.667 0.00 0.00 44.66 4.00
2942 3307 6.373759 ACATCTGTATGTACTCCATAGTGGA 58.626 40.000 0.00 0.00 44.66 4.02
2955 3320 6.401047 TCCATAGTGGAGTATTTAGGAACG 57.599 41.667 0.00 0.00 42.67 3.95
2956 3321 5.303589 TCCATAGTGGAGTATTTAGGAACGG 59.696 44.000 0.00 0.00 42.67 4.44
2957 3322 5.303589 CCATAGTGGAGTATTTAGGAACGGA 59.696 44.000 0.00 0.00 40.96 4.69
2958 3323 4.732672 AGTGGAGTATTTAGGAACGGAC 57.267 45.455 0.00 0.00 0.00 4.79
2959 3324 3.129988 AGTGGAGTATTTAGGAACGGACG 59.870 47.826 0.00 0.00 0.00 4.79
2960 3325 2.428171 TGGAGTATTTAGGAACGGACGG 59.572 50.000 0.00 0.00 0.00 4.79
2961 3326 2.689983 GGAGTATTTAGGAACGGACGGA 59.310 50.000 0.00 0.00 0.00 4.69
2962 3327 3.243334 GGAGTATTTAGGAACGGACGGAG 60.243 52.174 0.00 0.00 0.00 4.63
3178 3545 7.468494 GCTTGGTTGTTCCATTTTTGCTTAAAT 60.468 33.333 0.00 0.00 46.60 1.40
3207 3577 3.314635 GCTGATATGAGCTTGGTTCCTTG 59.685 47.826 6.95 0.00 35.95 3.61
3216 3586 2.744741 GCTTGGTTCCTTGAGCTACTTC 59.255 50.000 0.00 0.00 32.54 3.01
3235 3605 7.336931 GCTACTTCCATCTCACAAAAATCCTTA 59.663 37.037 0.00 0.00 0.00 2.69
3238 3608 6.515272 TCCATCTCACAAAAATCCTTAAGC 57.485 37.500 0.00 0.00 0.00 3.09
3267 3637 7.177216 TGTTTCTCTAACATTTACCCGTCTCTA 59.823 37.037 0.00 0.00 41.73 2.43
3316 3686 2.928396 CTGACGGACCCCAACCCT 60.928 66.667 0.00 0.00 0.00 4.34
3325 3695 1.289244 ACCCCAACCCTGATGATCCC 61.289 60.000 0.00 0.00 0.00 3.85
3507 3880 2.206182 AAAGTATCACCCCACCCCGC 62.206 60.000 0.00 0.00 0.00 6.13
3704 4078 0.178964 TGGGTTTTCTGGCTGGGAAG 60.179 55.000 0.00 0.00 0.00 3.46
3727 4105 2.035783 GTGGGTTTGAGAGCCCCC 59.964 66.667 0.00 0.00 45.29 5.40
3761 4139 5.499139 AGTTGAAAATGTCGAAGCAAAGA 57.501 34.783 0.00 0.00 0.00 2.52
3771 4149 6.385649 TGTCGAAGCAAAGAACCTAAAATT 57.614 33.333 0.00 0.00 0.00 1.82
3775 4153 6.938030 TCGAAGCAAAGAACCTAAAATTCCTA 59.062 34.615 0.00 0.00 0.00 2.94
3785 4163 9.822727 AGAACCTAAAATTCCTAAGAAAATCCA 57.177 29.630 0.00 0.00 35.09 3.41
3787 4165 8.595362 ACCTAAAATTCCTAAGAAAATCCAGG 57.405 34.615 0.00 0.00 35.09 4.45
3788 4166 8.177456 ACCTAAAATTCCTAAGAAAATCCAGGT 58.823 33.333 0.00 0.00 35.09 4.00
3789 4167 8.470002 CCTAAAATTCCTAAGAAAATCCAGGTG 58.530 37.037 0.00 0.00 35.09 4.00
3801 4180 3.979501 ATCCAGGTGCCTAAAATCCAT 57.020 42.857 0.00 0.00 0.00 3.41
3803 4182 2.580322 TCCAGGTGCCTAAAATCCATGA 59.420 45.455 0.00 0.00 0.00 3.07
3809 4188 4.380867 GGTGCCTAAAATCCATGACTGTTG 60.381 45.833 0.00 0.00 0.00 3.33
3818 4197 3.181329 TCCATGACTGTTGGGTCTGTAT 58.819 45.455 0.00 0.00 37.16 2.29
3867 4251 5.014808 ACAGAGCAATGCAAACTTTTCTT 57.985 34.783 8.35 0.00 0.00 2.52
3875 4259 6.634035 GCAATGCAAACTTTTCTTTGGAATTC 59.366 34.615 0.00 0.00 35.41 2.17
3879 4263 7.504403 TGCAAACTTTTCTTTGGAATTCCATA 58.496 30.769 27.53 21.19 46.97 2.74
3881 4265 7.359181 GCAAACTTTTCTTTGGAATTCCATACG 60.359 37.037 27.53 17.66 46.97 3.06
3884 4268 7.947282 ACTTTTCTTTGGAATTCCATACGAAA 58.053 30.769 27.53 26.70 46.97 3.46
3891 4429 7.403312 TTGGAATTCCATACGAAAATGTGAT 57.597 32.000 27.53 0.00 46.97 3.06
3962 4500 6.233434 TCATCTATGAATAGTGACATTGGGC 58.767 40.000 0.00 0.00 33.08 5.36
3982 4520 6.767456 TGGGCACTATTCAATGTTGATTTTT 58.233 32.000 0.00 0.00 37.00 1.94
3987 4525 9.934190 GCACTATTCAATGTTGATTTTTGTTTT 57.066 25.926 0.00 0.00 37.00 2.43
4028 4570 9.744468 ACAAATTTGTGTACTTAGAATTTCACC 57.256 29.630 22.71 0.00 40.49 4.02
4029 4571 9.743057 CAAATTTGTGTACTTAGAATTTCACCA 57.257 29.630 10.15 0.00 30.05 4.17
4035 4577 9.743057 TGTGTACTTAGAATTTCACCAAATTTG 57.257 29.630 11.40 11.40 41.47 2.32
4036 4578 9.744468 GTGTACTTAGAATTTCACCAAATTTGT 57.256 29.630 16.73 2.76 41.47 2.83
4038 4580 9.744468 GTACTTAGAATTTCACCAAATTTGTGT 57.256 29.630 16.73 11.18 41.47 3.72
4041 4583 9.965824 CTTAGAATTTCACCAAATTTGTGTACT 57.034 29.630 16.73 11.96 41.47 2.73
4058 5286 9.765795 TTTGTGTACTTATAAACAAATTTGGGG 57.234 29.630 21.74 6.46 41.59 4.96
4060 5288 7.728981 TGTGTACTTATAAACAAATTTGGGGGA 59.271 33.333 21.74 5.13 0.00 4.81
4061 5289 8.248253 GTGTACTTATAAACAAATTTGGGGGAG 58.752 37.037 21.74 13.10 0.00 4.30
4062 5290 7.951245 TGTACTTATAAACAAATTTGGGGGAGT 59.049 33.333 21.74 17.20 0.00 3.85
4070 5298 3.611025 AATTTGGGGGAGTTCAGTTCA 57.389 42.857 0.00 0.00 0.00 3.18
4071 5299 2.358322 TTTGGGGGAGTTCAGTTCAC 57.642 50.000 0.00 0.00 0.00 3.18
4072 5300 1.217916 TTGGGGGAGTTCAGTTCACA 58.782 50.000 0.00 0.00 0.00 3.58
4074 5302 0.765510 GGGGGAGTTCAGTTCACACT 59.234 55.000 0.00 0.00 0.00 3.55
4075 5303 1.270893 GGGGGAGTTCAGTTCACACTC 60.271 57.143 0.00 0.00 36.91 3.51
4077 5305 1.784525 GGAGTTCAGTTCACACTCCG 58.215 55.000 1.90 0.00 45.54 4.63
4078 5306 1.140816 GAGTTCAGTTCACACTCCGC 58.859 55.000 0.00 0.00 32.26 5.54
4080 5308 0.531974 GTTCAGTTCACACTCCGCCA 60.532 55.000 0.00 0.00 0.00 5.69
4083 5311 0.813610 CAGTTCACACTCCGCCAACA 60.814 55.000 0.00 0.00 0.00 3.33
4084 5312 0.107410 AGTTCACACTCCGCCAACAA 60.107 50.000 0.00 0.00 0.00 2.83
4085 5313 0.028902 GTTCACACTCCGCCAACAAC 59.971 55.000 0.00 0.00 0.00 3.32
4086 5314 0.107410 TTCACACTCCGCCAACAACT 60.107 50.000 0.00 0.00 0.00 3.16
4088 5316 1.139256 TCACACTCCGCCAACAACTTA 59.861 47.619 0.00 0.00 0.00 2.24
4090 5318 3.007074 TCACACTCCGCCAACAACTTATA 59.993 43.478 0.00 0.00 0.00 0.98
4091 5319 3.938963 CACACTCCGCCAACAACTTATAT 59.061 43.478 0.00 0.00 0.00 0.86
4092 5320 4.394920 CACACTCCGCCAACAACTTATATT 59.605 41.667 0.00 0.00 0.00 1.28
4094 5322 5.475564 ACACTCCGCCAACAACTTATATTTT 59.524 36.000 0.00 0.00 0.00 1.82
4095 5323 5.799936 CACTCCGCCAACAACTTATATTTTG 59.200 40.000 0.00 0.00 0.00 2.44
4096 5324 5.105917 ACTCCGCCAACAACTTATATTTTGG 60.106 40.000 0.00 0.00 39.86 3.28
4097 5325 5.010933 TCCGCCAACAACTTATATTTTGGA 58.989 37.500 2.83 0.00 39.33 3.53
4099 5327 5.575218 CCGCCAACAACTTATATTTTGGAAC 59.425 40.000 2.83 0.00 39.33 3.62
4100 5328 5.285134 CGCCAACAACTTATATTTTGGAACG 59.715 40.000 2.83 0.00 39.33 3.95
4101 5329 5.575218 GCCAACAACTTATATTTTGGAACGG 59.425 40.000 2.83 0.00 39.33 4.44
4102 5330 6.570764 GCCAACAACTTATATTTTGGAACGGA 60.571 38.462 2.83 0.00 39.33 4.69
4103 5331 7.027161 CCAACAACTTATATTTTGGAACGGAG 58.973 38.462 0.00 0.00 39.33 4.63
4104 5332 6.753107 ACAACTTATATTTTGGAACGGAGG 57.247 37.500 0.00 0.00 0.00 4.30
4105 5333 5.650703 ACAACTTATATTTTGGAACGGAGGG 59.349 40.000 0.00 0.00 0.00 4.30
4107 5335 5.681639 ACTTATATTTTGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4108 5336 5.191124 ACTTATATTTTGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
4109 5337 6.384886 ACTTATATTTTGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
4111 5339 2.314071 TTTGGAACGGAGGGAGTAGA 57.686 50.000 0.00 0.00 0.00 2.59
4112 5340 2.314071 TTGGAACGGAGGGAGTAGAA 57.686 50.000 0.00 0.00 0.00 2.10
4114 5342 3.675348 TGGAACGGAGGGAGTAGAATA 57.325 47.619 0.00 0.00 0.00 1.75
4115 5343 3.985127 TGGAACGGAGGGAGTAGAATAA 58.015 45.455 0.00 0.00 0.00 1.40
4135 5426 4.087892 CCAGTCGCCACCCTCCAG 62.088 72.222 0.00 0.00 0.00 3.86
4136 5427 2.997315 CAGTCGCCACCCTCCAGA 60.997 66.667 0.00 0.00 0.00 3.86
4137 5428 2.203788 AGTCGCCACCCTCCAGAA 60.204 61.111 0.00 0.00 0.00 3.02
4138 5429 2.266055 GTCGCCACCCTCCAGAAG 59.734 66.667 0.00 0.00 0.00 2.85
4139 5430 3.003173 TCGCCACCCTCCAGAAGG 61.003 66.667 0.00 0.00 45.77 3.46
4160 5451 0.321564 TCTTGATTGGTGCGGAGGTG 60.322 55.000 0.00 0.00 0.00 4.00
4161 5452 0.606401 CTTGATTGGTGCGGAGGTGT 60.606 55.000 0.00 0.00 0.00 4.16
4162 5453 0.179004 TTGATTGGTGCGGAGGTGTT 60.179 50.000 0.00 0.00 0.00 3.32
4163 5454 0.179004 TGATTGGTGCGGAGGTGTTT 60.179 50.000 0.00 0.00 0.00 2.83
4164 5455 0.521735 GATTGGTGCGGAGGTGTTTC 59.478 55.000 0.00 0.00 0.00 2.78
4165 5456 0.110486 ATTGGTGCGGAGGTGTTTCT 59.890 50.000 0.00 0.00 0.00 2.52
4166 5457 0.106918 TTGGTGCGGAGGTGTTTCTT 60.107 50.000 0.00 0.00 0.00 2.52
4167 5458 0.534203 TGGTGCGGAGGTGTTTCTTC 60.534 55.000 0.00 0.00 0.00 2.87
4168 5459 0.534203 GGTGCGGAGGTGTTTCTTCA 60.534 55.000 0.00 0.00 0.00 3.02
4169 5460 1.523758 GTGCGGAGGTGTTTCTTCAT 58.476 50.000 0.00 0.00 0.00 2.57
4170 5461 1.197721 GTGCGGAGGTGTTTCTTCATG 59.802 52.381 0.00 0.00 0.00 3.07
4171 5462 0.804989 GCGGAGGTGTTTCTTCATGG 59.195 55.000 0.00 0.00 0.00 3.66
4172 5463 1.610624 GCGGAGGTGTTTCTTCATGGA 60.611 52.381 0.00 0.00 0.00 3.41
4173 5464 2.778299 CGGAGGTGTTTCTTCATGGAA 58.222 47.619 0.00 0.00 0.00 3.53
4174 5465 2.484264 CGGAGGTGTTTCTTCATGGAAC 59.516 50.000 0.00 0.00 0.00 3.62
4214 5505 0.946221 GCCTGACTCCAACGACACAG 60.946 60.000 0.00 0.00 0.00 3.66
4218 5509 1.684450 TGACTCCAACGACACAGCTTA 59.316 47.619 0.00 0.00 0.00 3.09
4261 5552 4.072131 GTCCTTTTGGTCTTGTGATGCTA 58.928 43.478 0.00 0.00 41.38 3.49
4280 5571 4.202620 TGCTACCTATCTAGATCAGGCAGT 60.203 45.833 19.87 9.71 32.31 4.40
4284 5575 2.022718 ATCTAGATCAGGCAGTCCCC 57.977 55.000 0.00 0.00 0.00 4.81
4286 5577 1.133325 TCTAGATCAGGCAGTCCCCTC 60.133 57.143 0.00 0.00 31.24 4.30
4307 5598 1.643868 CCAATGTGCTTAGCGGCGAA 61.644 55.000 12.98 0.00 34.52 4.70
4312 5603 0.806102 GTGCTTAGCGGCGAATCTCA 60.806 55.000 12.98 0.00 34.52 3.27
4313 5604 0.108377 TGCTTAGCGGCGAATCTCAA 60.108 50.000 12.98 0.00 34.52 3.02
4314 5605 1.221414 GCTTAGCGGCGAATCTCAAT 58.779 50.000 12.98 0.00 0.00 2.57
4315 5606 1.193426 GCTTAGCGGCGAATCTCAATC 59.807 52.381 12.98 0.00 0.00 2.67
4316 5607 2.473816 CTTAGCGGCGAATCTCAATCA 58.526 47.619 12.98 0.00 0.00 2.57
4322 5659 2.153817 CGGCGAATCTCAATCATACACG 59.846 50.000 0.00 0.00 0.00 4.49
4347 5684 2.231964 GTGGCAATTCAATGAGGCTTGA 59.768 45.455 0.00 0.00 33.42 3.02
4353 5690 5.404946 CAATTCAATGAGGCTTGATTCGTT 58.595 37.500 0.00 0.00 35.20 3.85
4361 5698 3.476552 AGGCTTGATTCGTTCTTCAACA 58.523 40.909 0.00 0.00 32.14 3.33
4365 5702 4.461405 CTTGATTCGTTCTTCAACAGCAG 58.539 43.478 0.00 0.00 32.14 4.24
4381 5718 3.009916 ACAGCAGAATTGGGTGAATCTCT 59.990 43.478 11.60 0.00 37.22 3.10
4385 5722 5.131642 AGCAGAATTGGGTGAATCTCTATCA 59.868 40.000 0.00 0.00 0.00 2.15
4417 5754 5.183713 TGGTCTCTTATTGTGGCAATTCAAG 59.816 40.000 0.00 0.02 0.00 3.02
4440 5778 0.874390 GCTTGATCCGTGCTTCAACA 59.126 50.000 0.00 0.00 0.00 3.33
4460 5798 3.570975 ACAGCAGAATTGAAGTGATTGCA 59.429 39.130 0.00 0.00 32.79 4.08
4461 5799 4.166523 CAGCAGAATTGAAGTGATTGCAG 58.833 43.478 0.00 0.00 32.79 4.41
4462 5800 4.077108 AGCAGAATTGAAGTGATTGCAGA 58.923 39.130 0.00 0.00 32.79 4.26
4481 5819 5.183713 TGCAGATTGAAATCCTAGGTTTGTG 59.816 40.000 9.08 0.00 36.04 3.33
4487 5825 1.839424 ATCCTAGGTTTGTGCCAAGC 58.161 50.000 9.08 0.00 0.00 4.01
4494 5832 2.092484 AGGTTTGTGCCAAGCCAAATTT 60.092 40.909 18.23 0.00 33.78 1.82
4559 5906 8.076178 ACACAAATTAGTTTTGACTAGATGCAC 58.924 33.333 0.00 0.00 46.36 4.57
4564 5911 8.668510 ATTAGTTTTGACTAGATGCACCATAG 57.331 34.615 0.00 0.00 0.00 2.23
4581 5928 9.791801 TGCACCATAGTCATACAAACATATATT 57.208 29.630 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.131183 GAGCATCTCCGACTGTATTGC 58.869 52.381 0.00 0.00 0.00 3.56
78 79 7.539712 AATCTTAATATGTTGTGTCACCTCG 57.460 36.000 0.00 0.00 0.00 4.63
106 107 6.687081 TTACGAGAAGTTTGTGGTGATTTT 57.313 33.333 0.00 0.00 0.00 1.82
109 110 4.625742 CGATTACGAGAAGTTTGTGGTGAT 59.374 41.667 0.00 0.00 42.66 3.06
111 112 3.423123 GCGATTACGAGAAGTTTGTGGTG 60.423 47.826 0.00 0.00 42.66 4.17
118 119 1.822990 TCCCTGCGATTACGAGAAGTT 59.177 47.619 0.00 0.00 42.66 2.66
121 122 1.468565 CGTTCCCTGCGATTACGAGAA 60.469 52.381 0.00 0.00 42.66 2.87
129 130 2.893398 GGAGACGTTCCCTGCGAT 59.107 61.111 0.00 0.00 40.37 4.58
163 164 4.457466 TGGCTAAAGGAGACGTTCTTTTT 58.543 39.130 14.48 6.19 34.91 1.94
164 165 4.081322 TGGCTAAAGGAGACGTTCTTTT 57.919 40.909 14.48 12.54 34.91 2.27
165 166 3.764237 TGGCTAAAGGAGACGTTCTTT 57.236 42.857 13.96 13.96 34.91 2.52
166 167 3.764237 TTGGCTAAAGGAGACGTTCTT 57.236 42.857 0.00 0.00 34.91 2.52
167 168 3.181458 TGTTTGGCTAAAGGAGACGTTCT 60.181 43.478 0.00 0.00 34.91 3.01
168 169 3.135994 TGTTTGGCTAAAGGAGACGTTC 58.864 45.455 0.00 0.00 34.91 3.95
169 170 3.202829 TGTTTGGCTAAAGGAGACGTT 57.797 42.857 0.00 0.00 34.91 3.99
170 171 2.922740 TGTTTGGCTAAAGGAGACGT 57.077 45.000 0.00 0.00 34.91 4.34
171 172 3.606153 CGTTTGTTTGGCTAAAGGAGACG 60.606 47.826 0.00 0.00 34.91 4.18
172 173 3.314357 ACGTTTGTTTGGCTAAAGGAGAC 59.686 43.478 0.00 0.00 0.00 3.36
173 174 3.547746 ACGTTTGTTTGGCTAAAGGAGA 58.452 40.909 0.00 0.00 0.00 3.71
174 175 3.982576 ACGTTTGTTTGGCTAAAGGAG 57.017 42.857 0.00 0.00 0.00 3.69
175 176 3.735514 GCAACGTTTGTTTGGCTAAAGGA 60.736 43.478 0.00 0.00 35.72 3.36
176 177 2.538037 GCAACGTTTGTTTGGCTAAAGG 59.462 45.455 0.00 0.00 35.72 3.11
177 178 3.242712 CAGCAACGTTTGTTTGGCTAAAG 59.757 43.478 8.06 0.00 35.75 1.85
178 179 3.119459 TCAGCAACGTTTGTTTGGCTAAA 60.119 39.130 8.06 0.00 35.75 1.85
179 180 2.423892 TCAGCAACGTTTGTTTGGCTAA 59.576 40.909 8.06 0.00 35.75 3.09
180 181 2.017782 TCAGCAACGTTTGTTTGGCTA 58.982 42.857 8.06 0.00 35.75 3.93
181 182 0.814457 TCAGCAACGTTTGTTTGGCT 59.186 45.000 0.00 0.00 37.71 4.75
182 183 1.634702 TTCAGCAACGTTTGTTTGGC 58.365 45.000 0.00 0.00 35.72 4.52
183 184 3.616379 ACATTTCAGCAACGTTTGTTTGG 59.384 39.130 0.00 0.00 35.72 3.28
184 185 4.838665 ACATTTCAGCAACGTTTGTTTG 57.161 36.364 0.00 0.00 35.72 2.93
185 186 5.854431 AAACATTTCAGCAACGTTTGTTT 57.146 30.435 15.61 15.61 35.72 2.83
206 207 7.600375 TGCACGCATTTTTCTGGATTATTTTAA 59.400 29.630 0.00 0.00 0.00 1.52
244 246 5.059833 GCTCATCAGGGTTTAAGTGATAGG 58.940 45.833 0.00 0.00 29.64 2.57
249 251 3.679389 ACAGCTCATCAGGGTTTAAGTG 58.321 45.455 0.00 0.00 0.00 3.16
277 279 7.354312 AGTCATTGGTAGGGCTTTATAAACAT 58.646 34.615 0.00 0.00 0.00 2.71
289 291 9.689501 TTTTTATTTAGGTAGTCATTGGTAGGG 57.310 33.333 0.00 0.00 0.00 3.53
330 332 8.349568 GTCTTTCATAGACCAATAAAAAGGGT 57.650 34.615 0.00 0.00 46.30 4.34
387 389 6.057321 TGAAAACCGTCTTAACTATCCCAT 57.943 37.500 0.00 0.00 0.00 4.00
395 397 5.441709 TTTCCCATGAAAACCGTCTTAAC 57.558 39.130 0.00 0.00 37.53 2.01
424 426 4.921644 TTCCTCTATCTTCGGGGTTTTT 57.078 40.909 0.00 0.00 0.00 1.94
427 429 4.473559 TGATTTTCCTCTATCTTCGGGGTT 59.526 41.667 0.00 0.00 0.00 4.11
450 452 6.761242 CGTTTTTCCTCCCTCTTTTCATTTTT 59.239 34.615 0.00 0.00 0.00 1.94
463 465 4.582869 ACCTTACATACGTTTTTCCTCCC 58.417 43.478 0.00 0.00 0.00 4.30
545 547 7.436673 CCGTAGTGGAATCTCTAGAAAGATTTG 59.563 40.741 8.24 0.00 44.16 2.32
548 550 6.366340 TCCGTAGTGGAATCTCTAGAAAGAT 58.634 40.000 0.00 0.00 46.38 2.40
632 634 6.459670 TTAGAGATTACAATGCGGACTACA 57.540 37.500 0.00 0.00 0.00 2.74
640 642 6.442513 AAGCCTGTTTAGAGATTACAATGC 57.557 37.500 0.00 0.00 0.00 3.56
657 659 6.990349 TCCTTCCGTTTCTAAATATAAGCCTG 59.010 38.462 0.00 0.00 0.00 4.85
660 662 8.976471 GTACTCCTTCCGTTTCTAAATATAAGC 58.024 37.037 0.00 0.00 0.00 3.09
793 795 0.107654 ACAAGACGCCATTAGCCCTC 60.108 55.000 0.00 0.00 38.78 4.30
835 839 0.927029 GGTGGGGAGGGAAATAAGCT 59.073 55.000 0.00 0.00 0.00 3.74
951 956 2.242882 TTATATAGGGCGGAGGGGAC 57.757 55.000 0.00 0.00 0.00 4.46
952 957 2.829023 CTTTATATAGGGCGGAGGGGA 58.171 52.381 0.00 0.00 0.00 4.81
1155 1166 1.333636 AACAGATCGGGCAGAGGGAG 61.334 60.000 0.00 0.00 0.00 4.30
1165 1176 1.486726 AGGCCCTAGAAAACAGATCGG 59.513 52.381 0.00 0.00 0.00 4.18
1195 1207 4.018779 TCAAACCCTAATCACGGAAATCCT 60.019 41.667 0.00 0.00 0.00 3.24
1312 1329 2.806818 CGAGATCTAGACGGAATCGGAA 59.193 50.000 0.00 0.00 41.39 4.30
1401 1426 3.782656 AACAATCGACAACCTAACCCT 57.217 42.857 0.00 0.00 0.00 4.34
1445 1470 2.564062 CACCAATCAATCAGCAAACCCT 59.436 45.455 0.00 0.00 0.00 4.34
1446 1471 2.354003 CCACCAATCAATCAGCAAACCC 60.354 50.000 0.00 0.00 0.00 4.11
1605 1639 1.194772 GAGCCGTTCACTGTAAACTGC 59.805 52.381 2.36 2.36 37.18 4.40
1617 1666 1.992170 ACTGACGTAATGAGCCGTTC 58.008 50.000 0.00 0.00 37.44 3.95
1621 1670 2.094390 TGTGGTACTGACGTAATGAGCC 60.094 50.000 0.00 0.00 0.00 4.70
1795 2030 8.318412 TGTTTCTTAAATAGTCTAGTCCATGCA 58.682 33.333 0.00 0.00 0.00 3.96
1855 2090 6.911308 ACCATTCCTACTAAAACATAGGCAT 58.089 36.000 0.00 0.00 38.31 4.40
1891 2143 6.191657 TCCAGTATGCATTGATAGACCAAT 57.808 37.500 3.54 0.00 37.24 3.16
1997 2255 6.183360 GCCACTCTTGACAATTCACTCTATTC 60.183 42.308 0.00 0.00 0.00 1.75
2005 2263 2.957402 AGGCCACTCTTGACAATTCA 57.043 45.000 5.01 0.00 0.00 2.57
2089 2352 9.065871 CAATGCTAAAGTTGCTTCAGTAATTAC 57.934 33.333 7.57 7.57 0.00 1.89
2201 2464 5.994250 ACTGTATGCATTGATAGACCACTT 58.006 37.500 3.54 0.00 0.00 3.16
2292 2592 2.101582 CACTGTAGCCAGGTATCTCCAC 59.898 54.545 0.00 0.00 43.36 4.02
2322 2622 1.194781 ATCAAGTCACCCAGGACGCT 61.195 55.000 0.00 0.00 42.62 5.07
2325 2625 2.568623 AACATCAAGTCACCCAGGAC 57.431 50.000 0.00 0.00 38.08 3.85
2413 2715 5.959618 TCCATCATATACACGTCCAGTAG 57.040 43.478 0.00 0.00 0.00 2.57
2499 2818 2.202851 CTGCGAGATCAAGCGGCT 60.203 61.111 0.00 0.00 35.87 5.52
2502 2821 0.376152 ATTTGCTGCGAGATCAAGCG 59.624 50.000 7.72 3.60 35.87 4.68
2504 2823 4.510711 AGTCATATTTGCTGCGAGATCAAG 59.489 41.667 0.00 0.00 0.00 3.02
2533 2852 6.299805 TCAAGCCAGTCAAGTATGAGTAAT 57.700 37.500 0.00 0.00 37.11 1.89
2586 2932 1.147817 AGGACCTGCCCAAATCAAAGT 59.852 47.619 0.00 0.00 37.37 2.66
2591 2937 1.408822 CCTACAGGACCTGCCCAAATC 60.409 57.143 21.95 0.00 37.37 2.17
2636 2982 3.041946 GTCAGAGGGTCCCATGATAGTT 58.958 50.000 16.58 0.00 0.00 2.24
2820 3185 8.024145 ACTTATATTTAGGAACAGAGGGAGTG 57.976 38.462 0.00 0.00 0.00 3.51
2821 3186 9.900112 ATACTTATATTTAGGAACAGAGGGAGT 57.100 33.333 0.00 0.00 0.00 3.85
2847 3212 9.901172 GTAGTCCCTTATTGGAATCTCTAAAAA 57.099 33.333 0.00 0.00 35.80 1.94
2848 3213 9.053472 TGTAGTCCCTTATTGGAATCTCTAAAA 57.947 33.333 0.00 0.00 35.80 1.52
2849 3214 8.618240 TGTAGTCCCTTATTGGAATCTCTAAA 57.382 34.615 0.00 0.00 35.80 1.85
2850 3215 8.651389 CATGTAGTCCCTTATTGGAATCTCTAA 58.349 37.037 0.00 0.00 35.80 2.10
2851 3216 7.256332 GCATGTAGTCCCTTATTGGAATCTCTA 60.256 40.741 0.00 0.00 35.80 2.43
2852 3217 6.465035 GCATGTAGTCCCTTATTGGAATCTCT 60.465 42.308 0.00 0.00 35.80 3.10
2853 3218 5.703130 GCATGTAGTCCCTTATTGGAATCTC 59.297 44.000 0.00 0.00 35.80 2.75
2854 3219 5.625150 GCATGTAGTCCCTTATTGGAATCT 58.375 41.667 0.00 0.00 35.80 2.40
2855 3220 4.452455 CGCATGTAGTCCCTTATTGGAATC 59.548 45.833 0.00 0.00 35.80 2.52
2856 3221 4.102524 TCGCATGTAGTCCCTTATTGGAAT 59.897 41.667 0.00 0.00 35.80 3.01
2857 3222 3.452990 TCGCATGTAGTCCCTTATTGGAA 59.547 43.478 0.00 0.00 35.80 3.53
2858 3223 3.035363 TCGCATGTAGTCCCTTATTGGA 58.965 45.455 0.00 0.00 38.35 3.53
2859 3224 3.469008 TCGCATGTAGTCCCTTATTGG 57.531 47.619 0.00 0.00 0.00 3.16
2860 3225 3.248602 GCTTCGCATGTAGTCCCTTATTG 59.751 47.826 0.00 0.00 0.00 1.90
2861 3226 3.118408 TGCTTCGCATGTAGTCCCTTATT 60.118 43.478 0.00 0.00 31.71 1.40
2862 3227 2.434336 TGCTTCGCATGTAGTCCCTTAT 59.566 45.455 0.00 0.00 31.71 1.73
2863 3228 1.828595 TGCTTCGCATGTAGTCCCTTA 59.171 47.619 0.00 0.00 31.71 2.69
2864 3229 0.613260 TGCTTCGCATGTAGTCCCTT 59.387 50.000 0.00 0.00 31.71 3.95
2865 3230 0.613260 TTGCTTCGCATGTAGTCCCT 59.387 50.000 0.00 0.00 38.76 4.20
2866 3231 1.448985 TTTGCTTCGCATGTAGTCCC 58.551 50.000 0.00 0.00 38.76 4.46
2867 3232 3.126858 TCATTTTGCTTCGCATGTAGTCC 59.873 43.478 0.00 0.00 38.76 3.85
2868 3233 4.142816 ACTCATTTTGCTTCGCATGTAGTC 60.143 41.667 0.00 0.00 38.76 2.59
2869 3234 3.753272 ACTCATTTTGCTTCGCATGTAGT 59.247 39.130 0.00 0.00 38.76 2.73
2870 3235 4.093514 CACTCATTTTGCTTCGCATGTAG 58.906 43.478 0.00 0.00 38.76 2.74
2871 3236 3.750652 TCACTCATTTTGCTTCGCATGTA 59.249 39.130 0.00 0.00 38.76 2.29
2872 3237 2.553602 TCACTCATTTTGCTTCGCATGT 59.446 40.909 0.00 0.00 38.76 3.21
2873 3238 3.206034 TCACTCATTTTGCTTCGCATG 57.794 42.857 0.00 0.00 38.76 4.06
2874 3239 3.921119 TTCACTCATTTTGCTTCGCAT 57.079 38.095 0.00 0.00 38.76 4.73
2875 3240 3.503363 AGATTCACTCATTTTGCTTCGCA 59.497 39.130 0.00 0.00 36.47 5.10
2876 3241 4.088823 AGATTCACTCATTTTGCTTCGC 57.911 40.909 0.00 0.00 0.00 4.70
2877 3242 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
2878 3243 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
2915 3280 9.462606 CCACTATGGAGTACATACAGATGTATA 57.537 37.037 5.21 0.00 43.98 1.47
2916 3281 8.170730 TCCACTATGGAGTACATACAGATGTAT 58.829 37.037 0.00 0.00 44.40 2.29
2917 3282 7.523415 TCCACTATGGAGTACATACAGATGTA 58.477 38.462 0.00 0.00 42.34 2.29
2918 3283 6.373759 TCCACTATGGAGTACATACAGATGT 58.626 40.000 0.00 0.00 42.67 3.06
2919 3284 6.901081 TCCACTATGGAGTACATACAGATG 57.099 41.667 0.00 0.00 42.67 2.90
2932 3297 5.303589 CCGTTCCTAAATACTCCACTATGGA 59.696 44.000 0.00 0.00 45.98 3.41
2933 3298 5.303589 TCCGTTCCTAAATACTCCACTATGG 59.696 44.000 0.00 0.00 39.43 2.74
2934 3299 6.214399 GTCCGTTCCTAAATACTCCACTATG 58.786 44.000 0.00 0.00 0.00 2.23
2935 3300 5.009410 CGTCCGTTCCTAAATACTCCACTAT 59.991 44.000 0.00 0.00 0.00 2.12
2936 3301 4.336433 CGTCCGTTCCTAAATACTCCACTA 59.664 45.833 0.00 0.00 0.00 2.74
2937 3302 3.129988 CGTCCGTTCCTAAATACTCCACT 59.870 47.826 0.00 0.00 0.00 4.00
2938 3303 3.442100 CGTCCGTTCCTAAATACTCCAC 58.558 50.000 0.00 0.00 0.00 4.02
2939 3304 2.428171 CCGTCCGTTCCTAAATACTCCA 59.572 50.000 0.00 0.00 0.00 3.86
2940 3305 2.689983 TCCGTCCGTTCCTAAATACTCC 59.310 50.000 0.00 0.00 0.00 3.85
2941 3306 3.379688 ACTCCGTCCGTTCCTAAATACTC 59.620 47.826 0.00 0.00 0.00 2.59
2942 3307 3.359950 ACTCCGTCCGTTCCTAAATACT 58.640 45.455 0.00 0.00 0.00 2.12
2943 3308 3.790152 ACTCCGTCCGTTCCTAAATAC 57.210 47.619 0.00 0.00 0.00 1.89
2944 3309 4.526970 ACTACTCCGTCCGTTCCTAAATA 58.473 43.478 0.00 0.00 0.00 1.40
2945 3310 3.359950 ACTACTCCGTCCGTTCCTAAAT 58.640 45.455 0.00 0.00 0.00 1.40
2946 3311 2.795329 ACTACTCCGTCCGTTCCTAAA 58.205 47.619 0.00 0.00 0.00 1.85
2947 3312 2.496899 ACTACTCCGTCCGTTCCTAA 57.503 50.000 0.00 0.00 0.00 2.69
2948 3313 2.496899 AACTACTCCGTCCGTTCCTA 57.503 50.000 0.00 0.00 0.00 2.94
2949 3314 1.625511 AAACTACTCCGTCCGTTCCT 58.374 50.000 0.00 0.00 0.00 3.36
2950 3315 2.489722 AGTAAACTACTCCGTCCGTTCC 59.510 50.000 0.00 0.00 32.47 3.62
2951 3316 3.496155 CAGTAAACTACTCCGTCCGTTC 58.504 50.000 0.00 0.00 36.76 3.95
2952 3317 2.352127 GCAGTAAACTACTCCGTCCGTT 60.352 50.000 0.00 0.00 36.76 4.44
2953 3318 1.200948 GCAGTAAACTACTCCGTCCGT 59.799 52.381 0.00 0.00 36.76 4.69
2954 3319 1.471684 AGCAGTAAACTACTCCGTCCG 59.528 52.381 0.00 0.00 36.76 4.79
2955 3320 2.877335 CAGCAGTAAACTACTCCGTCC 58.123 52.381 0.00 0.00 36.76 4.79
2956 3321 2.094649 AGCAGCAGTAAACTACTCCGTC 60.095 50.000 0.00 0.00 36.76 4.79
2957 3322 1.893801 AGCAGCAGTAAACTACTCCGT 59.106 47.619 0.00 0.00 36.76 4.69
2958 3323 2.656560 AGCAGCAGTAAACTACTCCG 57.343 50.000 0.00 0.00 36.76 4.63
2959 3324 2.416893 GCAAGCAGCAGTAAACTACTCC 59.583 50.000 0.00 0.00 44.79 3.85
2960 3325 3.731274 GCAAGCAGCAGTAAACTACTC 57.269 47.619 0.00 0.00 44.79 2.59
3007 3373 6.118170 AGACCTGAAATATGTTCATGTCTGG 58.882 40.000 22.36 11.18 45.78 3.86
3137 3503 2.776536 ACCAAGCTAGGAATGCAGATCT 59.223 45.455 0.00 0.00 0.00 2.75
3178 3545 3.943381 CCAAGCTCATATCAGCAACAAGA 59.057 43.478 0.03 0.00 42.40 3.02
3207 3577 6.183360 GGATTTTTGTGAGATGGAAGTAGCTC 60.183 42.308 0.00 0.00 33.83 4.09
3211 3581 9.231297 CTTAAGGATTTTTGTGAGATGGAAGTA 57.769 33.333 0.00 0.00 0.00 2.24
3216 3586 6.521151 AGCTTAAGGATTTTTGTGAGATGG 57.479 37.500 4.29 0.00 0.00 3.51
3316 3686 1.308128 AGGCACCAGGGGATCATCA 60.308 57.895 0.00 0.00 0.00 3.07
3325 3695 2.202987 GCGATCTCAGGCACCAGG 60.203 66.667 0.00 0.00 0.00 4.45
3458 3828 6.259387 GGTTATTTAGGTGATAACGGTTCTGG 59.741 42.308 0.00 0.00 39.65 3.86
3507 3880 3.493129 TCAAAAGTCCATTCACTTCGTCG 59.507 43.478 0.00 0.00 35.45 5.12
3704 4078 1.546029 GGCTCTCAAACCCACAATTCC 59.454 52.381 0.00 0.00 0.00 3.01
3761 4139 9.035890 CCTGGATTTTCTTAGGAATTTTAGGTT 57.964 33.333 0.00 0.00 31.91 3.50
3771 4149 2.919602 AGGCACCTGGATTTTCTTAGGA 59.080 45.455 0.00 0.00 34.42 2.94
3775 4153 5.187772 GGATTTTAGGCACCTGGATTTTCTT 59.812 40.000 0.00 0.00 0.00 2.52
3782 4160 2.580322 TCATGGATTTTAGGCACCTGGA 59.420 45.455 0.00 0.00 0.00 3.86
3783 4161 2.689983 GTCATGGATTTTAGGCACCTGG 59.310 50.000 0.00 0.00 0.00 4.45
3785 4163 3.010584 ACAGTCATGGATTTTAGGCACCT 59.989 43.478 0.00 0.00 0.00 4.00
3786 4164 3.356290 ACAGTCATGGATTTTAGGCACC 58.644 45.455 0.00 0.00 0.00 5.01
3787 4165 4.380867 CCAACAGTCATGGATTTTAGGCAC 60.381 45.833 0.00 0.00 40.56 5.01
3788 4166 3.763360 CCAACAGTCATGGATTTTAGGCA 59.237 43.478 0.00 0.00 40.56 4.75
3789 4167 3.131046 CCCAACAGTCATGGATTTTAGGC 59.869 47.826 0.00 0.00 40.56 3.93
3875 4259 7.930217 ACTTGGAATATCACATTTTCGTATGG 58.070 34.615 0.00 0.00 0.00 2.74
3879 4263 7.447374 TGAACTTGGAATATCACATTTTCGT 57.553 32.000 0.00 0.00 0.00 3.85
4033 4575 8.368668 CCCCCAAATTTGTTTATAAGTACACAA 58.631 33.333 16.73 0.00 30.74 3.33
4034 4576 7.728981 TCCCCCAAATTTGTTTATAAGTACACA 59.271 33.333 16.73 0.00 0.00 3.72
4035 4577 8.124808 TCCCCCAAATTTGTTTATAAGTACAC 57.875 34.615 16.73 0.00 0.00 2.90
4036 4578 7.951245 ACTCCCCCAAATTTGTTTATAAGTACA 59.049 33.333 16.73 0.00 0.00 2.90
4038 4580 8.959676 AACTCCCCCAAATTTGTTTATAAGTA 57.040 30.769 16.73 0.00 0.00 2.24
4041 4583 7.511028 ACTGAACTCCCCCAAATTTGTTTATAA 59.489 33.333 16.73 0.00 0.00 0.98
4053 5281 1.133915 GTGTGAACTGAACTCCCCCAA 60.134 52.381 0.00 0.00 0.00 4.12
4060 5288 0.249911 GGCGGAGTGTGAACTGAACT 60.250 55.000 0.00 0.00 0.00 3.01
4061 5289 0.531974 TGGCGGAGTGTGAACTGAAC 60.532 55.000 0.00 0.00 0.00 3.18
4062 5290 0.179234 TTGGCGGAGTGTGAACTGAA 59.821 50.000 0.00 0.00 0.00 3.02
4070 5298 2.561478 ATAAGTTGTTGGCGGAGTGT 57.439 45.000 0.00 0.00 0.00 3.55
4071 5299 5.560966 AAATATAAGTTGTTGGCGGAGTG 57.439 39.130 0.00 0.00 0.00 3.51
4072 5300 5.105917 CCAAAATATAAGTTGTTGGCGGAGT 60.106 40.000 0.00 0.00 32.90 3.85
4074 5302 5.010933 TCCAAAATATAAGTTGTTGGCGGA 58.989 37.500 0.00 0.00 38.89 5.54
4075 5303 5.317733 TCCAAAATATAAGTTGTTGGCGG 57.682 39.130 0.00 0.00 38.89 6.13
4076 5304 5.285134 CGTTCCAAAATATAAGTTGTTGGCG 59.715 40.000 0.00 0.00 38.89 5.69
4077 5305 5.575218 CCGTTCCAAAATATAAGTTGTTGGC 59.425 40.000 0.00 0.00 38.89 4.52
4078 5306 6.915349 TCCGTTCCAAAATATAAGTTGTTGG 58.085 36.000 0.00 0.00 40.12 3.77
4080 5308 6.152154 CCCTCCGTTCCAAAATATAAGTTGTT 59.848 38.462 0.00 0.00 0.00 2.83
4083 5311 6.069705 TCCCTCCGTTCCAAAATATAAGTT 57.930 37.500 0.00 0.00 0.00 2.66
4084 5312 5.191124 ACTCCCTCCGTTCCAAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
4085 5313 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
4086 5314 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
4088 5316 4.966805 TCTACTCCCTCCGTTCCAAAATAT 59.033 41.667 0.00 0.00 0.00 1.28
4090 5318 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
4091 5319 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
4092 5320 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
4094 5322 2.544844 ATTCTACTCCCTCCGTTCCA 57.455 50.000 0.00 0.00 0.00 3.53
4095 5323 4.442612 GGTTTATTCTACTCCCTCCGTTCC 60.443 50.000 0.00 0.00 0.00 3.62
4096 5324 4.442612 GGGTTTATTCTACTCCCTCCGTTC 60.443 50.000 0.00 0.00 35.63 3.95
4097 5325 3.453717 GGGTTTATTCTACTCCCTCCGTT 59.546 47.826 0.00 0.00 35.63 4.44
4099 5327 3.036091 TGGGTTTATTCTACTCCCTCCG 58.964 50.000 0.00 0.00 38.95 4.63
4100 5328 4.038633 ACTGGGTTTATTCTACTCCCTCC 58.961 47.826 0.00 0.00 38.95 4.30
4101 5329 4.202131 CGACTGGGTTTATTCTACTCCCTC 60.202 50.000 0.00 0.00 38.95 4.30
4102 5330 3.705072 CGACTGGGTTTATTCTACTCCCT 59.295 47.826 0.00 0.00 38.95 4.20
4103 5331 3.740452 GCGACTGGGTTTATTCTACTCCC 60.740 52.174 0.00 0.00 38.68 4.30
4104 5332 3.455327 GCGACTGGGTTTATTCTACTCC 58.545 50.000 0.00 0.00 0.00 3.85
4105 5333 3.118884 TGGCGACTGGGTTTATTCTACTC 60.119 47.826 0.00 0.00 0.00 2.59
4107 5335 2.934553 GTGGCGACTGGGTTTATTCTAC 59.065 50.000 0.00 0.00 0.00 2.59
4108 5336 2.093341 GGTGGCGACTGGGTTTATTCTA 60.093 50.000 0.00 0.00 0.00 2.10
4109 5337 1.339727 GGTGGCGACTGGGTTTATTCT 60.340 52.381 0.00 0.00 0.00 2.40
4111 5339 0.323087 GGGTGGCGACTGGGTTTATT 60.323 55.000 0.00 0.00 0.00 1.40
4112 5340 1.205460 AGGGTGGCGACTGGGTTTAT 61.205 55.000 0.00 0.00 0.00 1.40
4114 5342 3.175710 AGGGTGGCGACTGGGTTT 61.176 61.111 0.00 0.00 0.00 3.27
4115 5343 3.637273 GAGGGTGGCGACTGGGTT 61.637 66.667 0.00 0.00 0.00 4.11
4133 5424 2.353889 CGCACCAATCAAGATCCTTCTG 59.646 50.000 0.00 0.00 30.72 3.02
4134 5425 2.636830 CGCACCAATCAAGATCCTTCT 58.363 47.619 0.00 0.00 0.00 2.85
4135 5426 1.672881 CCGCACCAATCAAGATCCTTC 59.327 52.381 0.00 0.00 0.00 3.46
4136 5427 1.281867 TCCGCACCAATCAAGATCCTT 59.718 47.619 0.00 0.00 0.00 3.36
4137 5428 0.911769 TCCGCACCAATCAAGATCCT 59.088 50.000 0.00 0.00 0.00 3.24
4138 5429 1.303309 CTCCGCACCAATCAAGATCC 58.697 55.000 0.00 0.00 0.00 3.36
4139 5430 1.303309 CCTCCGCACCAATCAAGATC 58.697 55.000 0.00 0.00 0.00 2.75
4140 5431 0.620556 ACCTCCGCACCAATCAAGAT 59.379 50.000 0.00 0.00 0.00 2.40
4141 5432 0.321564 CACCTCCGCACCAATCAAGA 60.322 55.000 0.00 0.00 0.00 3.02
4142 5433 0.606401 ACACCTCCGCACCAATCAAG 60.606 55.000 0.00 0.00 0.00 3.02
4143 5434 0.179004 AACACCTCCGCACCAATCAA 60.179 50.000 0.00 0.00 0.00 2.57
4144 5435 0.179004 AAACACCTCCGCACCAATCA 60.179 50.000 0.00 0.00 0.00 2.57
4182 5473 0.610785 GTCAGGCCGATGGGGAAAAA 60.611 55.000 0.00 0.00 38.47 1.94
4183 5474 1.001393 GTCAGGCCGATGGGGAAAA 60.001 57.895 0.00 0.00 38.47 2.29
4184 5475 1.910580 GAGTCAGGCCGATGGGGAAA 61.911 60.000 0.00 0.00 38.47 3.13
4185 5476 2.285368 AGTCAGGCCGATGGGGAA 60.285 61.111 0.00 0.00 38.47 3.97
4186 5477 2.764128 GAGTCAGGCCGATGGGGA 60.764 66.667 0.00 0.00 38.47 4.81
4187 5478 3.866582 GGAGTCAGGCCGATGGGG 61.867 72.222 0.00 0.00 39.58 4.96
4188 5479 2.669133 TTGGAGTCAGGCCGATGGG 61.669 63.158 0.00 0.00 0.00 4.00
4214 5505 1.259244 GCGAGGCTCGAAAGAATAAGC 59.741 52.381 38.56 14.12 43.74 3.09
4218 5509 1.734465 CTTTGCGAGGCTCGAAAGAAT 59.266 47.619 38.56 0.00 43.74 2.40
4245 5536 4.716784 AGATAGGTAGCATCACAAGACCAA 59.283 41.667 0.00 0.00 32.28 3.67
4246 5537 4.290093 AGATAGGTAGCATCACAAGACCA 58.710 43.478 0.00 0.00 32.28 4.02
4261 5552 3.501385 GGGACTGCCTGATCTAGATAGGT 60.501 52.174 20.36 9.33 34.06 3.08
4280 5571 1.558167 TAAGCACATTGGCGAGGGGA 61.558 55.000 0.00 0.00 39.27 4.81
4312 5603 5.125257 TGAATTGCCACAATCGTGTATGATT 59.875 36.000 0.00 0.00 41.93 2.57
4313 5604 4.639755 TGAATTGCCACAATCGTGTATGAT 59.360 37.500 0.00 0.00 41.93 2.45
4314 5605 4.006319 TGAATTGCCACAATCGTGTATGA 58.994 39.130 0.00 0.00 41.93 2.15
4315 5606 4.354071 TGAATTGCCACAATCGTGTATG 57.646 40.909 0.00 0.00 41.93 2.39
4316 5607 5.125257 TCATTGAATTGCCACAATCGTGTAT 59.875 36.000 0.00 0.00 41.93 2.29
4322 5659 3.118884 AGCCTCATTGAATTGCCACAATC 60.119 43.478 0.00 0.00 35.01 2.67
4338 5675 3.401033 TGAAGAACGAATCAAGCCTCA 57.599 42.857 0.00 0.00 0.00 3.86
4347 5684 5.455392 CAATTCTGCTGTTGAAGAACGAAT 58.545 37.500 0.00 0.00 40.42 3.34
4353 5690 2.886523 CACCCAATTCTGCTGTTGAAGA 59.113 45.455 0.00 0.00 0.00 2.87
4361 5698 5.131642 TGATAGAGATTCACCCAATTCTGCT 59.868 40.000 0.00 0.00 0.00 4.24
4365 5702 7.116948 CGTGTATGATAGAGATTCACCCAATTC 59.883 40.741 0.00 0.00 0.00 2.17
4381 5718 8.082242 CACAATAAGAGACCATCGTGTATGATA 58.918 37.037 0.00 0.00 37.86 2.15
4385 5722 5.601662 CCACAATAAGAGACCATCGTGTAT 58.398 41.667 0.00 0.00 0.00 2.29
4417 5754 1.078143 AAGCACGGATCAAGCCTCC 60.078 57.895 0.00 0.00 0.00 4.30
4440 5778 4.077108 TCTGCAATCACTTCAATTCTGCT 58.923 39.130 0.00 0.00 0.00 4.24
4450 5788 6.320672 CCTAGGATTTCAATCTGCAATCACTT 59.679 38.462 1.05 0.00 32.80 3.16
4455 5793 6.438425 ACAAACCTAGGATTTCAATCTGCAAT 59.562 34.615 17.98 0.00 35.73 3.56
4460 5798 4.706962 GGCACAAACCTAGGATTTCAATCT 59.293 41.667 17.98 0.00 35.73 2.40
4461 5799 4.462483 TGGCACAAACCTAGGATTTCAATC 59.538 41.667 17.98 0.00 31.92 2.67
4462 5800 4.415596 TGGCACAAACCTAGGATTTCAAT 58.584 39.130 17.98 0.00 31.92 2.57
4481 5819 5.747565 GTCAAACTTTAAATTTGGCTTGGC 58.252 37.500 14.85 0.00 38.38 4.52
4532 5870 8.629158 TGCATCTAGTCAAAACTAATTTGTGTT 58.371 29.630 0.00 0.00 46.89 3.32
4540 5878 7.620880 ACTATGGTGCATCTAGTCAAAACTAA 58.379 34.615 0.00 0.00 37.53 2.24
4548 5886 6.332735 TGTATGACTATGGTGCATCTAGTC 57.667 41.667 20.67 20.67 38.04 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.