Multiple sequence alignment - TraesCS2A01G539600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G539600 chr2A 100.000 2765 0 0 1 2765 752047019 752049783 0.000000e+00 5107.0
1 TraesCS2A01G539600 chr2A 100.000 93 0 0 3058 3150 752050076 752050168 4.180000e-39 172.0
2 TraesCS2A01G539600 chr2A 85.106 141 15 6 1244 1380 751608995 751609133 4.240000e-29 139.0
3 TraesCS2A01G539600 chr2A 76.744 215 32 17 1655 1859 751757586 751757792 1.550000e-18 104.0
4 TraesCS2A01G539600 chr2A 76.606 218 33 15 1655 1859 751845437 751845649 1.550000e-18 104.0
5 TraesCS2A01G539600 chr2A 86.667 90 10 1 3058 3147 74868208 74868295 7.190000e-17 99.0
6 TraesCS2A01G539600 chr2A 83.810 105 15 2 1277 1380 751546715 751546818 7.190000e-17 99.0
7 TraesCS2A01G539600 chr2D 87.851 1745 98 53 474 2141 620294930 620296637 0.000000e+00 1943.0
8 TraesCS2A01G539600 chr2D 84.243 641 53 22 1514 2140 620448051 620448657 5.860000e-162 580.0
9 TraesCS2A01G539600 chr2D 86.591 440 42 7 1 439 620294160 620294583 1.320000e-128 470.0
10 TraesCS2A01G539600 chr2D 79.942 344 47 15 1108 1441 620447684 620448015 1.890000e-57 233.0
11 TraesCS2A01G539600 chr2D 78.877 374 44 21 1514 1859 620224346 620224712 1.470000e-53 220.0
12 TraesCS2A01G539600 chr2D 80.749 187 27 8 1197 1380 620198879 620199059 1.520000e-28 137.0
13 TraesCS2A01G539600 chr2D 87.619 105 11 2 1277 1380 620153671 620153774 1.530000e-23 121.0
14 TraesCS2A01G539600 chr2D 91.566 83 7 0 1298 1380 620224144 620224226 7.140000e-22 115.0
15 TraesCS2A01G539600 chr2D 82.857 140 9 4 2288 2412 620296637 620296776 9.240000e-21 111.0
16 TraesCS2A01G539600 chr2B 86.490 1436 71 51 784 2146 760263470 760264855 0.000000e+00 1463.0
17 TraesCS2A01G539600 chr2B 90.062 322 19 8 2179 2494 760264837 760265151 3.780000e-109 405.0
18 TraesCS2A01G539600 chr2B 91.566 166 14 0 1517 1682 760259269 760259434 2.440000e-56 230.0
19 TraesCS2A01G539600 chr2B 85.326 184 5 7 538 706 760263156 760263332 1.500000e-38 171.0
20 TraesCS2A01G539600 chr2B 92.208 77 6 0 1304 1380 759741879 759741955 3.320000e-20 110.0
21 TraesCS2A01G539600 chr2B 77.000 200 26 13 1670 1859 760119216 760119405 2.590000e-16 97.1
22 TraesCS2A01G539600 chr2B 100.000 29 0 0 474 502 760263109 760263137 2.000000e-03 54.7
23 TraesCS2A01G539600 chr4A 100.000 347 0 0 1998 2344 521626945 521627291 2.650000e-180 641.0
24 TraesCS2A01G539600 chr3B 75.254 295 59 10 34 322 761945540 761945826 9.170000e-26 128.0
25 TraesCS2A01G539600 chr5A 89.247 93 8 1 3058 3150 314680568 314680658 7.140000e-22 115.0
26 TraesCS2A01G539600 chr5A 90.123 81 8 0 3069 3149 383823170 383823250 4.300000e-19 106.0
27 TraesCS2A01G539600 chr5A 96.364 55 2 0 2711 2765 314741577 314741631 1.200000e-14 91.6
28 TraesCS2A01G539600 chr6A 88.043 92 9 1 3058 3149 239118118 239118207 1.190000e-19 108.0
29 TraesCS2A01G539600 chr6A 87.912 91 9 1 3058 3148 147949543 147949631 4.300000e-19 106.0
30 TraesCS2A01G539600 chr7A 86.957 92 10 1 3058 3149 701395062 701395151 5.560000e-18 102.0
31 TraesCS2A01G539600 chr1B 92.453 53 4 0 2711 2763 420208444 420208392 3.370000e-10 76.8
32 TraesCS2A01G539600 chr1B 91.071 56 4 1 2711 2765 162192180 162192125 1.210000e-09 75.0
33 TraesCS2A01G539600 chr1A 91.071 56 4 1 2711 2765 49648204 49648149 1.210000e-09 75.0
34 TraesCS2A01G539600 chr1A 92.157 51 4 0 2711 2761 49643060 49643010 4.360000e-09 73.1
35 TraesCS2A01G539600 chr3D 92.157 51 4 0 2711 2761 226691517 226691567 4.360000e-09 73.1
36 TraesCS2A01G539600 chr3D 90.196 51 5 0 2711 2761 226686373 226686423 2.030000e-07 67.6
37 TraesCS2A01G539600 chr7B 89.286 56 5 1 2711 2765 438378591 438378536 5.640000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G539600 chr2A 752047019 752050168 3149 False 2639.500000 5107 100.000000 1 3150 2 chr2A.!!$F6 3149
1 TraesCS2A01G539600 chr2D 620294160 620296776 2616 False 841.333333 1943 85.766333 1 2412 3 chr2D.!!$F4 2411
2 TraesCS2A01G539600 chr2D 620447684 620448657 973 False 406.500000 580 82.092500 1108 2140 2 chr2D.!!$F5 1032
3 TraesCS2A01G539600 chr2B 760259269 760265151 5882 False 464.740000 1463 90.688800 474 2494 5 chr2B.!!$F3 2020

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
975 4422 1.066358 GTCCCGGGCTGCCTATATAAC 60.066 57.143 18.49 0.0 0.0 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2733 6294 0.035056 CCTAAGAGCTGGTTGGTGGG 60.035 60.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.225855 TAAACAAGACGGCTGCACAG 58.774 50.000 0.00 0.00 0.00 3.66
94 95 5.918608 ACACTATCAAGAATAATGCGACCT 58.081 37.500 0.00 0.00 0.00 3.85
95 96 6.349300 ACACTATCAAGAATAATGCGACCTT 58.651 36.000 0.00 0.00 0.00 3.50
114 115 6.461110 ACCTTTAATGAATGCATTCTGGAG 57.539 37.500 33.23 23.11 43.43 3.86
130 131 7.168135 GCATTCTGGAGTTTAGAAACAACTTTG 59.832 37.037 7.82 0.00 41.30 2.77
201 202 7.749539 AACTTAAATGGCGCATTTAACATAC 57.250 32.000 22.50 1.08 45.42 2.39
235 236 6.183360 CGGTACATTTGAATTTTATCAGCCCT 60.183 38.462 0.00 0.00 0.00 5.19
238 239 9.120538 GTACATTTGAATTTTATCAGCCCTCTA 57.879 33.333 0.00 0.00 0.00 2.43
261 262 4.828829 GCCTTTAGCTAACAGAGTAACCA 58.171 43.478 5.45 0.00 38.99 3.67
262 263 4.630505 GCCTTTAGCTAACAGAGTAACCAC 59.369 45.833 5.45 0.00 38.99 4.16
271 272 4.820894 ACAGAGTAACCACCTCATAACC 57.179 45.455 0.00 0.00 0.00 2.85
285 286 3.215151 TCATAACCGAGCCTAGAGACAG 58.785 50.000 0.00 0.00 0.00 3.51
294 295 4.376146 GAGCCTAGAGACAGCTATTTTGG 58.624 47.826 0.00 0.00 36.87 3.28
302 303 6.359804 AGAGACAGCTATTTTGGCATCATAA 58.640 36.000 0.00 0.00 0.00 1.90
329 330 7.797819 AGTCATGAAAAAGCTTAAGTAAGACG 58.202 34.615 0.00 0.00 35.33 4.18
342 343 7.360607 GCTTAAGTAAGACGGTTGCAAATAAGA 60.361 37.037 0.00 0.00 35.33 2.10
350 351 3.613737 CGGTTGCAAATAAGATGCCAAAG 59.386 43.478 0.00 0.00 43.16 2.77
351 352 3.934579 GGTTGCAAATAAGATGCCAAAGG 59.065 43.478 0.00 0.00 43.16 3.11
353 354 3.439154 TGCAAATAAGATGCCAAAGGGA 58.561 40.909 0.00 0.00 43.16 4.20
354 355 4.032310 TGCAAATAAGATGCCAAAGGGAT 58.968 39.130 0.00 0.00 43.16 3.85
367 368 4.812626 GCCAAAGGGATGATTGCAAATAAG 59.187 41.667 1.71 0.00 35.59 1.73
369 370 5.813672 CCAAAGGGATGATTGCAAATAAGTG 59.186 40.000 1.71 0.00 35.59 3.16
371 372 5.841957 AGGGATGATTGCAAATAAGTGAC 57.158 39.130 1.71 0.00 0.00 3.67
372 373 4.646492 AGGGATGATTGCAAATAAGTGACC 59.354 41.667 1.71 0.00 0.00 4.02
373 374 4.402155 GGGATGATTGCAAATAAGTGACCA 59.598 41.667 1.71 0.00 0.00 4.02
374 375 5.343249 GGATGATTGCAAATAAGTGACCAC 58.657 41.667 1.71 0.00 0.00 4.16
376 377 4.406456 TGATTGCAAATAAGTGACCACCT 58.594 39.130 1.71 0.00 0.00 4.00
377 378 4.458989 TGATTGCAAATAAGTGACCACCTC 59.541 41.667 1.71 0.00 0.00 3.85
378 379 3.788227 TGCAAATAAGTGACCACCTCT 57.212 42.857 0.00 0.00 0.00 3.69
379 380 4.901197 TGCAAATAAGTGACCACCTCTA 57.099 40.909 0.00 0.00 0.00 2.43
381 382 5.185454 TGCAAATAAGTGACCACCTCTATG 58.815 41.667 0.00 0.00 0.00 2.23
394 395 5.482175 ACCACCTCTATGGCTCTATTATGTC 59.518 44.000 0.00 0.00 44.33 3.06
413 414 9.829507 ATTATGTCTCCTAGAGAAAAGAACATG 57.170 33.333 0.00 0.00 40.59 3.21
427 428 8.129211 AGAAAAGAACATGTTTAACTTCTTCCG 58.871 33.333 13.36 0.00 32.89 4.30
429 430 6.541111 AGAACATGTTTAACTTCTTCCGTC 57.459 37.500 13.36 0.00 0.00 4.79
439 440 4.050852 ACTTCTTCCGTCGTAAACTTGT 57.949 40.909 0.00 0.00 0.00 3.16
440 441 3.800506 ACTTCTTCCGTCGTAAACTTGTG 59.199 43.478 0.00 0.00 0.00 3.33
455 456 4.464069 ACTTGTGGATCAGTCTAGCTTC 57.536 45.455 0.00 0.00 0.00 3.86
459 460 4.026052 TGTGGATCAGTCTAGCTTCATCA 58.974 43.478 0.00 0.00 0.00 3.07
462 463 5.695816 GTGGATCAGTCTAGCTTCATCAATC 59.304 44.000 0.00 0.00 0.00 2.67
463 464 5.221601 TGGATCAGTCTAGCTTCATCAATCC 60.222 44.000 0.00 0.00 0.00 3.01
464 465 4.313277 TCAGTCTAGCTTCATCAATCCG 57.687 45.455 0.00 0.00 0.00 4.18
580 3948 2.880879 CGACCGTCATGTGCTCCG 60.881 66.667 0.00 0.00 0.00 4.63
593 3975 1.968540 GCTCCGATAATGGCCAGGC 60.969 63.158 13.05 1.26 0.00 4.85
701 4103 4.489771 CAGCCATCCGTCCCACCC 62.490 72.222 0.00 0.00 0.00 4.61
768 4194 6.475727 CGATTATCATATATCCACCGGTTCAC 59.524 42.308 2.97 0.00 0.00 3.18
907 4354 3.304829 CCCCTTTGAAAAACCAAGAGGA 58.695 45.455 0.00 0.00 38.69 3.71
975 4422 1.066358 GTCCCGGGCTGCCTATATAAC 60.066 57.143 18.49 0.00 0.00 1.89
983 4430 1.449070 GCCTATATAACCCCGCCGC 60.449 63.158 0.00 0.00 0.00 6.53
1030 4477 1.528309 CACCACCACCACACTTCCC 60.528 63.158 0.00 0.00 0.00 3.97
1036 4483 1.679898 CACCACACTTCCCCCTCTC 59.320 63.158 0.00 0.00 0.00 3.20
1053 4513 0.030101 CTCTTCTCATCGCCCGAGAC 59.970 60.000 0.00 0.00 39.21 3.36
1067 4527 1.300156 GAGACACAGAGCACGCACA 60.300 57.895 0.00 0.00 0.00 4.57
1069 4529 2.588877 ACACAGAGCACGCACACC 60.589 61.111 0.00 0.00 0.00 4.16
1080 4543 4.626081 GCACACCCACGCTGTCCT 62.626 66.667 0.00 0.00 0.00 3.85
1086 4549 2.743718 CCACGCTGTCCTTCCACT 59.256 61.111 0.00 0.00 0.00 4.00
1089 4552 0.951040 CACGCTGTCCTTCCACTTCC 60.951 60.000 0.00 0.00 0.00 3.46
1092 4555 0.398318 GCTGTCCTTCCACTTCCACT 59.602 55.000 0.00 0.00 0.00 4.00
1189 4652 1.432270 GCGCTATGAAGGTGACTGCC 61.432 60.000 0.00 0.00 42.68 4.85
1288 4766 5.507985 GGTTCTGATGGTTTTTCTTGTCTGG 60.508 44.000 0.00 0.00 0.00 3.86
1323 4801 2.031012 TGGTGCTGAAGCTGGACG 59.969 61.111 3.61 0.00 42.66 4.79
1426 4906 2.385803 TCTCCAATTCCGTCCTCCTAC 58.614 52.381 0.00 0.00 0.00 3.18
1451 4931 3.190079 GCTCTGCTTCGTTGTGATCATA 58.810 45.455 0.00 0.00 0.00 2.15
1544 5039 2.668212 ACAACATGGGCGTGGACG 60.668 61.111 0.00 0.00 43.27 4.79
1588 5083 4.740822 GGCAGCATGGACCCCGTT 62.741 66.667 0.00 0.00 35.86 4.44
1626 5121 2.933834 CAAGGTCTTCCCCGGGGT 60.934 66.667 38.73 16.72 36.47 4.95
1672 5200 1.079057 GGAGGACAAGAAGGACGGC 60.079 63.158 0.00 0.00 0.00 5.68
1728 5256 1.000607 CGACAAGGACAAGAAGGACGA 60.001 52.381 0.00 0.00 0.00 4.20
1840 5374 1.609501 CGAGGAGGACCCCAACTCA 60.610 63.158 2.29 0.00 35.45 3.41
1904 5438 5.670485 TGTACATGTACATTTCTAGCTGGG 58.330 41.667 30.31 0.00 40.77 4.45
2078 5614 3.060602 GGATAAAGTAGACGCATCTGCC 58.939 50.000 0.00 0.00 38.27 4.85
2229 5770 0.933097 CGAATGCTGATTCCGAGTGG 59.067 55.000 0.00 0.00 35.43 4.00
2255 5796 2.997315 TCACCGGGTGCTCTCCAG 60.997 66.667 22.42 0.00 32.98 3.86
2258 5799 2.997315 CCGGGTGCTCTCCAGTGA 60.997 66.667 0.00 0.00 0.00 3.41
2267 5811 3.386078 GTGCTCTCCAGTGATGATAGGAA 59.614 47.826 0.00 0.00 0.00 3.36
2292 5836 3.931285 AAACACCGTAACGAGTGAAAC 57.069 42.857 10.86 0.00 37.43 2.78
2350 5911 4.009675 AGTACTCTGAAGCTCTCTGACAG 58.990 47.826 0.00 0.00 0.00 3.51
2351 5912 2.875296 ACTCTGAAGCTCTCTGACAGT 58.125 47.619 1.59 0.00 32.89 3.55
2412 5973 8.948631 TCTTCTATTCTATACAGGCAAAAGTG 57.051 34.615 0.00 0.00 0.00 3.16
2440 6001 3.067106 CAAGGATCGAATTCCCCATACG 58.933 50.000 1.30 0.00 36.35 3.06
2467 6028 8.450385 AGCTCGCGTATTTCTATATTTTCTAC 57.550 34.615 5.77 0.00 0.00 2.59
2468 6029 8.298140 AGCTCGCGTATTTCTATATTTTCTACT 58.702 33.333 5.77 0.00 0.00 2.57
2469 6030 8.366666 GCTCGCGTATTTCTATATTTTCTACTG 58.633 37.037 5.77 0.00 0.00 2.74
2470 6031 9.395707 CTCGCGTATTTCTATATTTTCTACTGT 57.604 33.333 5.77 0.00 0.00 3.55
2471 6032 9.177304 TCGCGTATTTCTATATTTTCTACTGTG 57.823 33.333 5.77 0.00 0.00 3.66
2472 6033 8.965172 CGCGTATTTCTATATTTTCTACTGTGT 58.035 33.333 0.00 0.00 0.00 3.72
2501 6062 6.791887 ATTCGAGCTGAATTACCATATGTG 57.208 37.500 1.24 0.00 45.06 3.21
2502 6063 4.058124 TCGAGCTGAATTACCATATGTGC 58.942 43.478 1.24 0.00 0.00 4.57
2503 6064 4.060900 CGAGCTGAATTACCATATGTGCT 58.939 43.478 1.24 0.00 0.00 4.40
2504 6065 4.512944 CGAGCTGAATTACCATATGTGCTT 59.487 41.667 1.24 0.00 0.00 3.91
2505 6066 5.696270 CGAGCTGAATTACCATATGTGCTTA 59.304 40.000 1.24 0.00 0.00 3.09
2506 6067 6.369890 CGAGCTGAATTACCATATGTGCTTAT 59.630 38.462 1.24 0.00 0.00 1.73
2507 6068 7.095060 CGAGCTGAATTACCATATGTGCTTATT 60.095 37.037 1.24 0.00 0.00 1.40
2508 6069 8.469309 AGCTGAATTACCATATGTGCTTATTT 57.531 30.769 1.24 0.00 0.00 1.40
2509 6070 8.571336 AGCTGAATTACCATATGTGCTTATTTC 58.429 33.333 1.24 1.75 0.00 2.17
2510 6071 8.352201 GCTGAATTACCATATGTGCTTATTTCA 58.648 33.333 1.24 5.44 0.00 2.69
2511 6072 9.669353 CTGAATTACCATATGTGCTTATTTCAC 57.331 33.333 1.24 0.00 35.14 3.18
2512 6073 8.341903 TGAATTACCATATGTGCTTATTTCACG 58.658 33.333 1.24 0.00 37.26 4.35
2513 6074 7.801716 ATTACCATATGTGCTTATTTCACGT 57.198 32.000 1.24 0.00 37.26 4.49
2514 6075 5.484173 ACCATATGTGCTTATTTCACGTG 57.516 39.130 9.94 9.94 37.26 4.49
2515 6076 5.182487 ACCATATGTGCTTATTTCACGTGA 58.818 37.500 15.76 15.76 37.26 4.35
2516 6077 5.645929 ACCATATGTGCTTATTTCACGTGAA 59.354 36.000 26.53 26.53 37.26 3.18
2517 6078 6.150307 ACCATATGTGCTTATTTCACGTGAAA 59.850 34.615 37.62 37.62 46.60 2.69
2536 6097 5.733676 TGAAATCGATCACAGATTCTTGGA 58.266 37.500 0.00 0.00 37.34 3.53
2537 6098 5.814188 TGAAATCGATCACAGATTCTTGGAG 59.186 40.000 0.00 0.00 37.34 3.86
2538 6099 3.808466 TCGATCACAGATTCTTGGAGG 57.192 47.619 0.00 0.00 0.00 4.30
2539 6100 3.365472 TCGATCACAGATTCTTGGAGGA 58.635 45.455 0.00 0.00 0.00 3.71
2540 6101 3.131223 TCGATCACAGATTCTTGGAGGAC 59.869 47.826 0.00 0.00 0.00 3.85
2541 6102 3.452474 GATCACAGATTCTTGGAGGACG 58.548 50.000 0.00 0.00 0.00 4.79
2542 6103 2.248248 TCACAGATTCTTGGAGGACGT 58.752 47.619 0.00 0.00 0.00 4.34
2543 6104 2.029020 TCACAGATTCTTGGAGGACGTG 60.029 50.000 0.00 0.00 0.00 4.49
2544 6105 1.971357 ACAGATTCTTGGAGGACGTGT 59.029 47.619 0.00 0.00 0.00 4.49
2545 6106 2.289072 ACAGATTCTTGGAGGACGTGTG 60.289 50.000 0.00 0.00 0.00 3.82
2546 6107 1.971357 AGATTCTTGGAGGACGTGTGT 59.029 47.619 0.00 0.00 0.00 3.72
2547 6108 2.069273 GATTCTTGGAGGACGTGTGTG 58.931 52.381 0.00 0.00 0.00 3.82
2548 6109 1.116308 TTCTTGGAGGACGTGTGTGA 58.884 50.000 0.00 0.00 0.00 3.58
2549 6110 1.338107 TCTTGGAGGACGTGTGTGAT 58.662 50.000 0.00 0.00 0.00 3.06
2550 6111 1.691976 TCTTGGAGGACGTGTGTGATT 59.308 47.619 0.00 0.00 0.00 2.57
2551 6112 2.104111 TCTTGGAGGACGTGTGTGATTT 59.896 45.455 0.00 0.00 0.00 2.17
2552 6113 2.631160 TGGAGGACGTGTGTGATTTT 57.369 45.000 0.00 0.00 0.00 1.82
2553 6114 2.925724 TGGAGGACGTGTGTGATTTTT 58.074 42.857 0.00 0.00 0.00 1.94
2554 6115 2.875933 TGGAGGACGTGTGTGATTTTTC 59.124 45.455 0.00 0.00 0.00 2.29
2555 6116 2.875933 GGAGGACGTGTGTGATTTTTCA 59.124 45.455 0.00 0.00 0.00 2.69
2556 6117 3.502211 GGAGGACGTGTGTGATTTTTCAT 59.498 43.478 0.00 0.00 0.00 2.57
2557 6118 4.378459 GGAGGACGTGTGTGATTTTTCATC 60.378 45.833 0.00 0.00 0.00 2.92
2558 6119 3.502211 AGGACGTGTGTGATTTTTCATCC 59.498 43.478 0.00 0.00 0.00 3.51
2559 6120 3.252215 GGACGTGTGTGATTTTTCATCCA 59.748 43.478 0.00 0.00 0.00 3.41
2560 6121 4.082787 GGACGTGTGTGATTTTTCATCCAT 60.083 41.667 0.00 0.00 0.00 3.41
2561 6122 5.452078 ACGTGTGTGATTTTTCATCCATT 57.548 34.783 0.00 0.00 0.00 3.16
2562 6123 5.221880 ACGTGTGTGATTTTTCATCCATTG 58.778 37.500 0.00 0.00 0.00 2.82
2563 6124 5.009510 ACGTGTGTGATTTTTCATCCATTGA 59.990 36.000 0.00 0.00 0.00 2.57
2564 6125 5.919707 CGTGTGTGATTTTTCATCCATTGAA 59.080 36.000 0.00 0.00 42.62 2.69
2565 6126 6.088483 CGTGTGTGATTTTTCATCCATTGAAG 59.912 38.462 0.00 0.00 44.90 3.02
2566 6127 6.366877 GTGTGTGATTTTTCATCCATTGAAGG 59.633 38.462 0.00 0.00 44.90 3.46
2567 6128 5.870978 GTGTGATTTTTCATCCATTGAAGGG 59.129 40.000 0.00 0.00 44.90 3.95
2568 6129 5.779260 TGTGATTTTTCATCCATTGAAGGGA 59.221 36.000 0.00 0.00 44.90 4.20
2569 6130 6.269538 TGTGATTTTTCATCCATTGAAGGGAA 59.730 34.615 1.50 0.00 44.90 3.97
2570 6131 7.160726 GTGATTTTTCATCCATTGAAGGGAAA 58.839 34.615 1.50 0.00 44.90 3.13
2571 6132 7.661027 GTGATTTTTCATCCATTGAAGGGAAAA 59.339 33.333 1.50 0.00 44.90 2.29
2572 6133 8.216423 TGATTTTTCATCCATTGAAGGGAAAAA 58.784 29.630 1.50 6.06 44.90 1.94
2573 6134 7.800155 TTTTTCATCCATTGAAGGGAAAAAC 57.200 32.000 1.50 0.00 44.90 2.43
2574 6135 6.491714 TTTCATCCATTGAAGGGAAAAACA 57.508 33.333 1.50 0.00 44.90 2.83
2575 6136 6.491714 TTCATCCATTGAAGGGAAAAACAA 57.508 33.333 1.50 0.00 39.44 2.83
2576 6137 6.491714 TCATCCATTGAAGGGAAAAACAAA 57.508 33.333 1.50 0.00 38.09 2.83
2577 6138 7.077050 TCATCCATTGAAGGGAAAAACAAAT 57.923 32.000 1.50 0.00 38.09 2.32
2578 6139 6.935771 TCATCCATTGAAGGGAAAAACAAATG 59.064 34.615 1.50 0.00 38.09 2.32
2579 6140 5.062528 TCCATTGAAGGGAAAAACAAATGC 58.937 37.500 0.00 0.00 0.00 3.56
2580 6141 4.820716 CCATTGAAGGGAAAAACAAATGCA 59.179 37.500 0.00 0.00 0.00 3.96
2581 6142 5.474189 CCATTGAAGGGAAAAACAAATGCAT 59.526 36.000 0.00 0.00 0.00 3.96
2582 6143 6.016108 CCATTGAAGGGAAAAACAAATGCATT 60.016 34.615 5.99 5.99 0.00 3.56
2583 6144 6.374565 TTGAAGGGAAAAACAAATGCATTG 57.625 33.333 13.82 9.78 44.95 2.82
2584 6145 4.275443 TGAAGGGAAAAACAAATGCATTGC 59.725 37.500 13.82 0.46 43.13 3.56
2585 6146 3.148412 AGGGAAAAACAAATGCATTGCC 58.852 40.909 13.82 4.41 43.13 4.52
2586 6147 2.883386 GGGAAAAACAAATGCATTGCCA 59.117 40.909 13.82 0.00 43.13 4.92
2587 6148 3.317430 GGGAAAAACAAATGCATTGCCAA 59.683 39.130 13.82 0.00 43.13 4.52
2588 6149 4.202090 GGGAAAAACAAATGCATTGCCAAA 60.202 37.500 13.82 0.00 43.13 3.28
2589 6150 4.739228 GGAAAAACAAATGCATTGCCAAAC 59.261 37.500 13.82 2.77 43.13 2.93
2590 6151 3.605743 AAACAAATGCATTGCCAAACG 57.394 38.095 13.82 0.00 43.13 3.60
2591 6152 0.867086 ACAAATGCATTGCCAAACGC 59.133 45.000 13.82 0.00 43.13 4.84
2592 6153 0.166379 CAAATGCATTGCCAAACGCC 59.834 50.000 13.82 0.00 36.24 5.68
2593 6154 1.290491 AAATGCATTGCCAAACGCCG 61.290 50.000 13.82 0.00 36.24 6.46
2594 6155 2.152297 AATGCATTGCCAAACGCCGA 62.152 50.000 12.09 0.00 36.24 5.54
2595 6156 2.049618 GCATTGCCAAACGCCGAA 60.050 55.556 0.00 0.00 36.24 4.30
2596 6157 2.088178 GCATTGCCAAACGCCGAAG 61.088 57.895 0.00 0.00 36.24 3.79
2617 6178 3.382083 GGAGGCCCTCCTTTAAATCAA 57.618 47.619 23.24 0.00 46.41 2.57
2618 6179 3.291584 GGAGGCCCTCCTTTAAATCAAG 58.708 50.000 23.24 0.00 46.41 3.02
2619 6180 3.053619 GGAGGCCCTCCTTTAAATCAAGA 60.054 47.826 23.24 0.00 46.41 3.02
2620 6181 4.203226 GAGGCCCTCCTTTAAATCAAGAG 58.797 47.826 0.00 0.00 44.46 2.85
2621 6182 3.593780 AGGCCCTCCTTTAAATCAAGAGT 59.406 43.478 0.00 0.00 40.66 3.24
2622 6183 3.948473 GGCCCTCCTTTAAATCAAGAGTC 59.052 47.826 0.00 0.00 0.00 3.36
2623 6184 4.567747 GGCCCTCCTTTAAATCAAGAGTCA 60.568 45.833 0.00 0.00 0.00 3.41
2624 6185 4.396478 GCCCTCCTTTAAATCAAGAGTCAC 59.604 45.833 0.00 0.00 0.00 3.67
2625 6186 5.560724 CCCTCCTTTAAATCAAGAGTCACA 58.439 41.667 0.00 0.00 0.00 3.58
2626 6187 5.645497 CCCTCCTTTAAATCAAGAGTCACAG 59.355 44.000 0.00 0.00 0.00 3.66
2627 6188 6.234177 CCTCCTTTAAATCAAGAGTCACAGT 58.766 40.000 0.00 0.00 0.00 3.55
2628 6189 6.370166 CCTCCTTTAAATCAAGAGTCACAGTC 59.630 42.308 0.00 0.00 0.00 3.51
2629 6190 6.826668 TCCTTTAAATCAAGAGTCACAGTCA 58.173 36.000 0.00 0.00 0.00 3.41
2630 6191 7.453393 TCCTTTAAATCAAGAGTCACAGTCAT 58.547 34.615 0.00 0.00 0.00 3.06
2631 6192 8.593679 TCCTTTAAATCAAGAGTCACAGTCATA 58.406 33.333 0.00 0.00 0.00 2.15
2632 6193 8.877779 CCTTTAAATCAAGAGTCACAGTCATAG 58.122 37.037 0.00 0.00 0.00 2.23
2633 6194 8.777865 TTTAAATCAAGAGTCACAGTCATAGG 57.222 34.615 0.00 0.00 0.00 2.57
2634 6195 3.876274 TCAAGAGTCACAGTCATAGGC 57.124 47.619 0.00 0.00 0.00 3.93
2635 6196 3.435275 TCAAGAGTCACAGTCATAGGCT 58.565 45.455 0.00 0.00 0.00 4.58
2636 6197 3.445450 TCAAGAGTCACAGTCATAGGCTC 59.555 47.826 0.00 0.00 0.00 4.70
2637 6198 3.380471 AGAGTCACAGTCATAGGCTCT 57.620 47.619 0.00 0.00 0.00 4.09
2638 6199 3.707316 AGAGTCACAGTCATAGGCTCTT 58.293 45.455 0.00 0.00 0.00 2.85
2639 6200 3.699038 AGAGTCACAGTCATAGGCTCTTC 59.301 47.826 0.00 0.00 0.00 2.87
2640 6201 3.699038 GAGTCACAGTCATAGGCTCTTCT 59.301 47.826 0.00 0.00 0.00 2.85
2641 6202 4.093011 AGTCACAGTCATAGGCTCTTCTT 58.907 43.478 0.00 0.00 0.00 2.52
2642 6203 5.265191 AGTCACAGTCATAGGCTCTTCTTA 58.735 41.667 0.00 0.00 0.00 2.10
2643 6204 5.896678 AGTCACAGTCATAGGCTCTTCTTAT 59.103 40.000 0.00 0.00 0.00 1.73
2644 6205 6.382570 AGTCACAGTCATAGGCTCTTCTTATT 59.617 38.462 0.00 0.00 0.00 1.40
2645 6206 7.044798 GTCACAGTCATAGGCTCTTCTTATTT 58.955 38.462 0.00 0.00 0.00 1.40
2646 6207 7.550906 GTCACAGTCATAGGCTCTTCTTATTTT 59.449 37.037 0.00 0.00 0.00 1.82
2647 6208 8.103305 TCACAGTCATAGGCTCTTCTTATTTTT 58.897 33.333 0.00 0.00 0.00 1.94
2648 6209 8.394121 CACAGTCATAGGCTCTTCTTATTTTTC 58.606 37.037 0.00 0.00 0.00 2.29
2649 6210 8.325046 ACAGTCATAGGCTCTTCTTATTTTTCT 58.675 33.333 0.00 0.00 0.00 2.52
2650 6211 8.825745 CAGTCATAGGCTCTTCTTATTTTTCTC 58.174 37.037 0.00 0.00 0.00 2.87
2651 6212 8.767436 AGTCATAGGCTCTTCTTATTTTTCTCT 58.233 33.333 0.00 0.00 0.00 3.10
2652 6213 9.389755 GTCATAGGCTCTTCTTATTTTTCTCTT 57.610 33.333 0.00 0.00 0.00 2.85
2653 6214 9.388506 TCATAGGCTCTTCTTATTTTTCTCTTG 57.611 33.333 0.00 0.00 0.00 3.02
2654 6215 9.171877 CATAGGCTCTTCTTATTTTTCTCTTGT 57.828 33.333 0.00 0.00 0.00 3.16
2655 6216 7.680442 AGGCTCTTCTTATTTTTCTCTTGTC 57.320 36.000 0.00 0.00 0.00 3.18
2656 6217 7.227156 AGGCTCTTCTTATTTTTCTCTTGTCA 58.773 34.615 0.00 0.00 0.00 3.58
2657 6218 7.390162 AGGCTCTTCTTATTTTTCTCTTGTCAG 59.610 37.037 0.00 0.00 0.00 3.51
2658 6219 7.389053 GGCTCTTCTTATTTTTCTCTTGTCAGA 59.611 37.037 0.00 0.00 0.00 3.27
2660 6221 8.316640 TCTTCTTATTTTTCTCTTGTCAGAGC 57.683 34.615 0.00 0.00 45.80 4.09
2661 6222 7.389053 TCTTCTTATTTTTCTCTTGTCAGAGCC 59.611 37.037 0.00 0.00 45.80 4.70
2662 6223 6.773638 TCTTATTTTTCTCTTGTCAGAGCCT 58.226 36.000 0.00 0.00 45.80 4.58
2663 6224 6.876257 TCTTATTTTTCTCTTGTCAGAGCCTC 59.124 38.462 0.00 0.00 45.80 4.70
2664 6225 4.422073 TTTTTCTCTTGTCAGAGCCTCA 57.578 40.909 0.00 0.00 45.80 3.86
2665 6226 3.393089 TTTCTCTTGTCAGAGCCTCAC 57.607 47.619 0.00 0.00 45.80 3.51
2666 6227 2.001076 TCTCTTGTCAGAGCCTCACA 57.999 50.000 0.00 0.00 45.80 3.58
2667 6228 1.891811 TCTCTTGTCAGAGCCTCACAG 59.108 52.381 0.00 0.00 45.80 3.66
2668 6229 1.891811 CTCTTGTCAGAGCCTCACAGA 59.108 52.381 0.00 0.00 40.39 3.41
2669 6230 2.298446 CTCTTGTCAGAGCCTCACAGAA 59.702 50.000 0.00 0.00 40.39 3.02
2670 6231 2.700371 TCTTGTCAGAGCCTCACAGAAA 59.300 45.455 0.00 0.00 0.00 2.52
2671 6232 3.134623 TCTTGTCAGAGCCTCACAGAAAA 59.865 43.478 0.00 0.00 0.00 2.29
2672 6233 3.117491 TGTCAGAGCCTCACAGAAAAG 57.883 47.619 0.00 0.00 0.00 2.27
2673 6234 2.224378 TGTCAGAGCCTCACAGAAAAGG 60.224 50.000 0.00 0.00 35.65 3.11
2681 6242 3.679389 CCTCACAGAAAAGGCTGTATGT 58.321 45.455 0.00 0.00 46.80 2.29
2682 6243 3.438087 CCTCACAGAAAAGGCTGTATGTG 59.562 47.826 16.17 16.17 46.80 3.21
2683 6244 4.067896 CTCACAGAAAAGGCTGTATGTGT 58.932 43.478 19.61 8.25 46.80 3.72
2684 6245 4.460263 TCACAGAAAAGGCTGTATGTGTT 58.540 39.130 19.61 0.00 46.80 3.32
2685 6246 4.515191 TCACAGAAAAGGCTGTATGTGTTC 59.485 41.667 19.61 0.00 46.80 3.18
2686 6247 4.516698 CACAGAAAAGGCTGTATGTGTTCT 59.483 41.667 14.74 0.00 46.80 3.01
2687 6248 5.009010 CACAGAAAAGGCTGTATGTGTTCTT 59.991 40.000 14.74 0.00 46.80 2.52
2688 6249 5.594317 ACAGAAAAGGCTGTATGTGTTCTTT 59.406 36.000 0.00 0.00 46.67 2.52
2689 6250 6.145535 CAGAAAAGGCTGTATGTGTTCTTTC 58.854 40.000 0.00 0.00 0.00 2.62
2690 6251 6.016777 CAGAAAAGGCTGTATGTGTTCTTTCT 60.017 38.462 0.00 0.00 0.00 2.52
2691 6252 6.547510 AGAAAAGGCTGTATGTGTTCTTTCTT 59.452 34.615 0.00 0.00 0.00 2.52
2692 6253 6.715347 AAAGGCTGTATGTGTTCTTTCTTT 57.285 33.333 0.00 0.00 0.00 2.52
2693 6254 6.715347 AAGGCTGTATGTGTTCTTTCTTTT 57.285 33.333 0.00 0.00 0.00 2.27
2694 6255 6.715347 AGGCTGTATGTGTTCTTTCTTTTT 57.285 33.333 0.00 0.00 0.00 1.94
2695 6256 6.507023 AGGCTGTATGTGTTCTTTCTTTTTG 58.493 36.000 0.00 0.00 0.00 2.44
2696 6257 6.096846 AGGCTGTATGTGTTCTTTCTTTTTGT 59.903 34.615 0.00 0.00 0.00 2.83
2697 6258 6.756542 GGCTGTATGTGTTCTTTCTTTTTGTT 59.243 34.615 0.00 0.00 0.00 2.83
2698 6259 7.277760 GGCTGTATGTGTTCTTTCTTTTTGTTT 59.722 33.333 0.00 0.00 0.00 2.83
2699 6260 8.655970 GCTGTATGTGTTCTTTCTTTTTGTTTT 58.344 29.630 0.00 0.00 0.00 2.43
2718 6279 3.719173 TTTTGGTTTCTTACTTGGCCG 57.281 42.857 0.00 0.00 0.00 6.13
2719 6280 1.611519 TTGGTTTCTTACTTGGCCGG 58.388 50.000 0.00 0.00 0.00 6.13
2720 6281 0.891904 TGGTTTCTTACTTGGCCGGC 60.892 55.000 21.18 21.18 0.00 6.13
2721 6282 1.592400 GGTTTCTTACTTGGCCGGCC 61.592 60.000 39.40 39.40 0.00 6.13
2722 6283 0.891904 GTTTCTTACTTGGCCGGCCA 60.892 55.000 44.23 44.23 45.63 5.36
2748 6309 3.971702 GGCCCACCAACCAGCTCT 61.972 66.667 0.00 0.00 35.26 4.09
2749 6310 2.116125 GCCCACCAACCAGCTCTT 59.884 61.111 0.00 0.00 0.00 2.85
2750 6311 1.378762 GCCCACCAACCAGCTCTTA 59.621 57.895 0.00 0.00 0.00 2.10
2751 6312 0.678048 GCCCACCAACCAGCTCTTAG 60.678 60.000 0.00 0.00 0.00 2.18
2752 6313 0.035056 CCCACCAACCAGCTCTTAGG 60.035 60.000 0.00 0.00 0.00 2.69
2753 6314 0.678048 CCACCAACCAGCTCTTAGGC 60.678 60.000 0.00 0.00 0.00 3.93
2754 6315 0.036732 CACCAACCAGCTCTTAGGCA 59.963 55.000 0.00 0.00 34.17 4.75
2755 6316 0.036875 ACCAACCAGCTCTTAGGCAC 59.963 55.000 0.00 0.00 34.17 5.01
2756 6317 0.036732 CCAACCAGCTCTTAGGCACA 59.963 55.000 0.00 0.00 34.17 4.57
2757 6318 1.545428 CCAACCAGCTCTTAGGCACAA 60.545 52.381 0.00 0.00 34.17 3.33
2758 6319 2.440409 CAACCAGCTCTTAGGCACAAT 58.560 47.619 0.00 0.00 34.17 2.71
2759 6320 3.609853 CAACCAGCTCTTAGGCACAATA 58.390 45.455 0.00 0.00 34.17 1.90
2760 6321 4.009675 CAACCAGCTCTTAGGCACAATAA 58.990 43.478 0.00 0.00 34.17 1.40
2761 6322 3.610911 ACCAGCTCTTAGGCACAATAAC 58.389 45.455 0.00 0.00 34.17 1.89
2762 6323 3.009033 ACCAGCTCTTAGGCACAATAACA 59.991 43.478 0.00 0.00 34.17 2.41
2763 6324 3.624861 CCAGCTCTTAGGCACAATAACAG 59.375 47.826 0.00 0.00 34.17 3.16
2764 6325 3.064545 CAGCTCTTAGGCACAATAACAGC 59.935 47.826 0.00 0.00 34.17 4.40
3091 6652 2.768344 CCCCCAGATGGTAGCCGT 60.768 66.667 0.00 0.00 0.00 5.68
3092 6653 2.505982 CCCCAGATGGTAGCCGTG 59.494 66.667 0.00 0.00 0.00 4.94
3093 6654 2.063979 CCCCAGATGGTAGCCGTGA 61.064 63.158 0.00 0.00 0.00 4.35
3094 6655 1.443407 CCCAGATGGTAGCCGTGAG 59.557 63.158 0.00 0.00 0.00 3.51
3095 6656 1.043116 CCCAGATGGTAGCCGTGAGA 61.043 60.000 0.00 0.00 0.00 3.27
3096 6657 0.824109 CCAGATGGTAGCCGTGAGAA 59.176 55.000 0.00 0.00 0.00 2.87
3097 6658 1.207089 CCAGATGGTAGCCGTGAGAAA 59.793 52.381 0.00 0.00 0.00 2.52
3098 6659 2.158900 CCAGATGGTAGCCGTGAGAAAT 60.159 50.000 0.00 0.00 0.00 2.17
3099 6660 3.126831 CAGATGGTAGCCGTGAGAAATC 58.873 50.000 0.00 0.00 0.00 2.17
3100 6661 2.128035 GATGGTAGCCGTGAGAAATCG 58.872 52.381 0.00 0.00 0.00 3.34
3101 6662 0.459585 TGGTAGCCGTGAGAAATCGC 60.460 55.000 0.00 0.00 0.00 4.58
3102 6663 1.152383 GGTAGCCGTGAGAAATCGCC 61.152 60.000 0.00 0.00 0.00 5.54
3103 6664 1.226859 TAGCCGTGAGAAATCGCCG 60.227 57.895 0.00 0.00 0.00 6.46
3104 6665 2.622903 TAGCCGTGAGAAATCGCCGG 62.623 60.000 0.00 0.00 41.50 6.13
3105 6666 3.564027 CCGTGAGAAATCGCCGGC 61.564 66.667 19.07 19.07 0.00 6.13
3106 6667 3.913573 CGTGAGAAATCGCCGGCG 61.914 66.667 42.13 42.13 41.35 6.46
3107 6668 2.813908 GTGAGAAATCGCCGGCGT 60.814 61.111 44.16 30.06 40.74 5.68
3108 6669 1.517694 GTGAGAAATCGCCGGCGTA 60.518 57.895 44.16 31.71 40.74 4.42
3109 6670 1.226859 TGAGAAATCGCCGGCGTAG 60.227 57.895 44.16 21.20 40.74 3.51
3122 6683 4.659002 CGTAGCACGTCGTAGTCC 57.341 61.111 0.00 0.00 36.74 3.85
3123 6684 2.084844 CGTAGCACGTCGTAGTCCT 58.915 57.895 0.00 0.00 36.74 3.85
3124 6685 0.026027 CGTAGCACGTCGTAGTCCTC 59.974 60.000 0.00 0.00 36.74 3.71
3125 6686 0.376502 GTAGCACGTCGTAGTCCTCC 59.623 60.000 0.00 0.00 0.00 4.30
3126 6687 0.745845 TAGCACGTCGTAGTCCTCCC 60.746 60.000 0.00 0.00 0.00 4.30
3127 6688 2.338015 GCACGTCGTAGTCCTCCCA 61.338 63.158 0.00 0.00 0.00 4.37
3128 6689 1.801332 CACGTCGTAGTCCTCCCAG 59.199 63.158 0.00 0.00 0.00 4.45
3129 6690 1.378250 ACGTCGTAGTCCTCCCAGG 60.378 63.158 0.00 0.00 36.46 4.45
3130 6691 1.378250 CGTCGTAGTCCTCCCAGGT 60.378 63.158 0.00 0.00 36.53 4.00
3131 6692 1.654954 CGTCGTAGTCCTCCCAGGTG 61.655 65.000 0.00 0.00 36.53 4.00
3132 6693 1.000019 TCGTAGTCCTCCCAGGTGG 60.000 63.158 0.00 0.00 36.53 4.61
3133 6694 2.722201 CGTAGTCCTCCCAGGTGGC 61.722 68.421 0.00 0.00 36.53 5.01
3134 6695 2.040606 TAGTCCTCCCAGGTGGCC 59.959 66.667 0.00 0.00 36.53 5.36
3135 6696 3.976490 TAGTCCTCCCAGGTGGCCG 62.976 68.421 0.00 0.00 36.53 6.13
3137 6698 4.649705 TCCTCCCAGGTGGCCGAA 62.650 66.667 0.00 0.00 36.53 4.30
3138 6699 3.411517 CCTCCCAGGTGGCCGAAT 61.412 66.667 0.00 0.00 0.00 3.34
3139 6700 2.190578 CTCCCAGGTGGCCGAATC 59.809 66.667 0.00 0.00 0.00 2.52
3140 6701 3.406595 CTCCCAGGTGGCCGAATCC 62.407 68.421 0.00 0.00 0.00 3.01
3141 6702 4.856801 CCCAGGTGGCCGAATCCG 62.857 72.222 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.281070 AAGTGACCTGTGCAGCCG 60.281 61.111 0.00 0.00 0.00 5.52
27 28 5.916661 TCACTCCTTACATAGAAGTGACC 57.083 43.478 0.00 0.00 31.07 4.02
54 55 7.208777 TGATAGTGTTGTTTTGTTGCATGAAT 58.791 30.769 0.00 0.00 0.00 2.57
66 67 7.962918 GTCGCATTATTCTTGATAGTGTTGTTT 59.037 33.333 0.00 0.00 32.25 2.83
71 72 5.918608 AGGTCGCATTATTCTTGATAGTGT 58.081 37.500 0.00 0.00 32.25 3.55
87 88 4.398988 AGAATGCATTCATTAAAGGTCGCA 59.601 37.500 34.59 0.00 42.60 5.10
94 95 9.241919 TCTAAACTCCAGAATGCATTCATTAAA 57.758 29.630 34.59 17.39 42.60 1.52
95 96 8.806429 TCTAAACTCCAGAATGCATTCATTAA 57.194 30.769 34.59 18.87 42.60 1.40
114 115 7.755582 ATTGCTGACAAAGTTGTTTCTAAAC 57.244 32.000 0.00 0.00 42.43 2.01
130 131 6.917217 AGTAGAGCTATGAAAATTGCTGAC 57.083 37.500 0.00 0.00 35.76 3.51
185 186 4.428209 CCATTTGTATGTTAAATGCGCCA 58.572 39.130 4.18 0.00 41.75 5.69
187 188 3.801594 CCCCATTTGTATGTTAAATGCGC 59.198 43.478 0.00 0.00 41.75 6.09
189 190 3.801594 CGCCCCATTTGTATGTTAAATGC 59.198 43.478 0.00 0.00 41.75 3.56
201 202 2.292103 CAAATGTACCGCCCCATTTG 57.708 50.000 13.68 13.68 46.50 2.32
261 262 2.175069 TCTCTAGGCTCGGTTATGAGGT 59.825 50.000 0.00 0.00 36.47 3.85
262 263 2.554893 GTCTCTAGGCTCGGTTATGAGG 59.445 54.545 0.00 0.00 36.47 3.86
271 272 4.047822 CAAAATAGCTGTCTCTAGGCTCG 58.952 47.826 0.00 0.00 37.50 5.03
285 286 7.922278 TCATGACTTTTATGATGCCAAAATAGC 59.078 33.333 0.00 0.00 30.03 2.97
294 295 7.823149 AGCTTTTTCATGACTTTTATGATGC 57.177 32.000 0.00 0.00 34.76 3.91
302 303 9.952188 GTCTTACTTAAGCTTTTTCATGACTTT 57.048 29.630 3.20 0.00 33.40 2.66
323 324 4.095782 GGCATCTTATTTGCAACCGTCTTA 59.904 41.667 0.00 0.00 41.95 2.10
329 330 3.934579 CCTTTGGCATCTTATTTGCAACC 59.065 43.478 0.00 0.00 41.95 3.77
342 343 1.868713 TGCAATCATCCCTTTGGCAT 58.131 45.000 0.00 0.00 0.00 4.40
350 351 4.402155 TGGTCACTTATTTGCAATCATCCC 59.598 41.667 0.00 0.00 0.00 3.85
351 352 5.343249 GTGGTCACTTATTTGCAATCATCC 58.657 41.667 0.00 0.00 0.00 3.51
353 354 5.018809 AGGTGGTCACTTATTTGCAATCAT 58.981 37.500 0.00 0.00 0.00 2.45
354 355 4.406456 AGGTGGTCACTTATTTGCAATCA 58.594 39.130 0.00 0.00 0.00 2.57
367 368 1.490574 AGAGCCATAGAGGTGGTCAC 58.509 55.000 0.00 0.00 41.47 3.67
369 370 5.482175 ACATAATAGAGCCATAGAGGTGGTC 59.518 44.000 0.00 0.00 41.47 4.02
371 372 5.719085 AGACATAATAGAGCCATAGAGGTGG 59.281 44.000 0.00 0.00 42.35 4.61
372 373 6.127479 GGAGACATAATAGAGCCATAGAGGTG 60.127 46.154 0.00 0.00 40.61 4.00
373 374 5.955355 GGAGACATAATAGAGCCATAGAGGT 59.045 44.000 0.00 0.00 40.61 3.85
374 375 6.194235 AGGAGACATAATAGAGCCATAGAGG 58.806 44.000 0.00 0.00 41.84 3.69
376 377 8.164057 TCTAGGAGACATAATAGAGCCATAGA 57.836 38.462 0.00 0.00 0.00 1.98
377 378 8.271458 TCTCTAGGAGACATAATAGAGCCATAG 58.729 40.741 3.71 0.00 40.59 2.23
378 379 8.164057 TCTCTAGGAGACATAATAGAGCCATA 57.836 38.462 3.71 0.00 40.59 2.74
379 380 7.038531 TCTCTAGGAGACATAATAGAGCCAT 57.961 40.000 3.71 0.00 40.59 4.40
381 382 7.768807 TTTCTCTAGGAGACATAATAGAGCC 57.231 40.000 3.71 0.00 40.59 4.70
394 395 9.495572 AGTTAAACATGTTCTTTTCTCTAGGAG 57.504 33.333 12.39 0.00 0.00 3.69
413 414 6.516478 AGTTTACGACGGAAGAAGTTAAAC 57.484 37.500 0.00 2.85 0.00 2.01
423 424 2.886862 TCCACAAGTTTACGACGGAA 57.113 45.000 0.00 0.00 0.00 4.30
427 428 4.557205 AGACTGATCCACAAGTTTACGAC 58.443 43.478 0.00 0.00 0.00 4.34
429 430 4.563184 GCTAGACTGATCCACAAGTTTACG 59.437 45.833 0.00 0.00 0.00 3.18
439 440 5.221601 GGATTGATGAAGCTAGACTGATCCA 60.222 44.000 0.00 0.00 31.83 3.41
440 441 5.237048 GGATTGATGAAGCTAGACTGATCC 58.763 45.833 0.00 0.00 0.00 3.36
467 468 2.105528 CCATTGGAGCAATGCGCC 59.894 61.111 21.15 21.15 46.73 6.53
468 469 2.584143 GCCATTGGAGCAATGCGC 60.584 61.111 6.95 0.00 46.73 6.09
469 470 2.278336 CGCCATTGGAGCAATGCG 60.278 61.111 6.95 1.07 46.73 4.73
572 3940 0.179048 CTGGCCATTATCGGAGCACA 60.179 55.000 5.51 0.00 0.00 4.57
576 3944 4.386413 GCCTGGCCATTATCGGAG 57.614 61.111 5.51 0.00 0.00 4.63
701 4103 2.597805 ATCTCGGGTCGATCGGGG 60.598 66.667 16.41 4.01 34.61 5.73
750 4176 5.011125 AGAGAAGTGAACCGGTGGATATATG 59.989 44.000 8.52 0.00 0.00 1.78
754 4180 2.758979 GAGAGAAGTGAACCGGTGGATA 59.241 50.000 8.52 0.00 0.00 2.59
768 4194 1.080501 TGCGCAACGGAGAGAGAAG 60.081 57.895 8.16 0.00 0.00 2.85
835 4282 3.435186 GGAAGCTGCCACGAAGCC 61.435 66.667 5.59 0.00 41.82 4.35
953 4400 1.194781 ATATAGGCAGCCCGGGACTG 61.195 60.000 29.77 29.77 38.22 3.51
954 4401 0.412244 TATATAGGCAGCCCGGGACT 59.588 55.000 29.31 18.84 35.76 3.85
955 4402 1.066358 GTTATATAGGCAGCCCGGGAC 60.066 57.143 29.31 16.50 35.76 4.46
956 4403 1.272807 GTTATATAGGCAGCCCGGGA 58.727 55.000 29.31 0.71 35.76 5.14
989 4436 3.125376 ATCTGGGCGGCAAGGGATC 62.125 63.158 14.28 0.00 0.00 3.36
993 4440 2.825836 GTGATCTGGGCGGCAAGG 60.826 66.667 14.28 0.92 0.00 3.61
1030 4477 1.745264 GGGCGATGAGAAGAGAGGG 59.255 63.158 0.00 0.00 0.00 4.30
1036 4483 0.526524 GTGTCTCGGGCGATGAGAAG 60.527 60.000 4.58 0.00 43.65 2.85
1053 4513 3.349006 GGGTGTGCGTGCTCTGTG 61.349 66.667 0.00 0.00 0.00 3.66
1067 4527 2.847234 TGGAAGGACAGCGTGGGT 60.847 61.111 0.00 0.00 0.00 4.51
1069 4529 0.951040 GAAGTGGAAGGACAGCGTGG 60.951 60.000 0.00 0.00 0.00 4.94
1075 4535 1.416401 GTGAGTGGAAGTGGAAGGACA 59.584 52.381 0.00 0.00 0.00 4.02
1077 4537 1.801242 TGTGAGTGGAAGTGGAAGGA 58.199 50.000 0.00 0.00 0.00 3.36
1080 4543 5.930837 AAAATTTGTGAGTGGAAGTGGAA 57.069 34.783 0.00 0.00 0.00 3.53
1086 4549 6.565060 CGACGTGATAAAATTTGTGAGTGGAA 60.565 38.462 0.00 0.00 0.00 3.53
1089 4552 4.549599 GCGACGTGATAAAATTTGTGAGTG 59.450 41.667 0.00 0.00 0.00 3.51
1092 4555 4.073169 GGCGACGTGATAAAATTTGTGA 57.927 40.909 0.00 0.00 0.00 3.58
1123 4586 3.753434 CACGAGGCAGCGGAGAGT 61.753 66.667 4.86 0.00 35.12 3.24
1170 4633 1.432270 GGCAGTCACCTTCATAGCGC 61.432 60.000 0.00 0.00 0.00 5.92
1171 4634 1.148157 CGGCAGTCACCTTCATAGCG 61.148 60.000 0.00 0.00 0.00 4.26
1172 4635 0.108138 ACGGCAGTCACCTTCATAGC 60.108 55.000 0.00 0.00 0.00 2.97
1173 4636 1.927895 GACGGCAGTCACCTTCATAG 58.072 55.000 12.41 0.00 46.32 2.23
1189 4652 3.454573 TCCCCAATCGGACCGACG 61.455 66.667 21.02 13.46 39.18 5.12
1207 4670 2.287970 GCAACGTAAAGAAACCCCCAAG 60.288 50.000 0.00 0.00 0.00 3.61
1323 4801 3.406361 CTGCCTGTCGTCGTGCAC 61.406 66.667 6.82 6.82 0.00 4.57
1426 4906 0.236711 CACAACGAAGCAGAGCAAGG 59.763 55.000 0.00 0.00 0.00 3.61
1451 4931 3.608796 GCAGAAAATTCTCTCCAGCTCT 58.391 45.455 0.00 0.00 34.74 4.09
1544 5039 2.611518 CGTCATCTTCTGGTCCTTCAC 58.388 52.381 0.00 0.00 0.00 3.18
1660 5155 0.319555 TCTTGTCGCCGTCCTTCTTG 60.320 55.000 0.00 0.00 0.00 3.02
1672 5200 3.011760 GCCGCCGTCTTTCTTGTCG 62.012 63.158 0.00 0.00 0.00 4.35
1693 5221 2.087009 GTCGCCGTCCTTCTTGTCG 61.087 63.158 0.00 0.00 0.00 4.35
1728 5256 0.035458 GTACACCACCTGCTTGCTCT 59.965 55.000 0.00 0.00 0.00 4.09
1840 5374 2.896408 CGATCAGCAGATGACGCAT 58.104 52.632 0.00 0.00 41.91 4.73
1886 5420 3.813443 CAGCCCAGCTAGAAATGTACAT 58.187 45.455 1.41 1.41 36.40 2.29
2078 5614 0.723414 ATCTGCGCATCACAAACTCG 59.277 50.000 12.24 0.00 0.00 4.18
2211 5752 1.303309 CCCACTCGGAATCAGCATTC 58.697 55.000 0.00 0.00 38.19 2.67
2212 5753 0.620556 ACCCACTCGGAATCAGCATT 59.379 50.000 0.00 0.00 34.64 3.56
2213 5754 0.107508 CACCCACTCGGAATCAGCAT 60.108 55.000 0.00 0.00 34.64 3.79
2214 5755 1.296392 CACCCACTCGGAATCAGCA 59.704 57.895 0.00 0.00 34.64 4.41
2215 5756 1.450312 CCACCCACTCGGAATCAGC 60.450 63.158 0.00 0.00 34.64 4.26
2216 5757 0.176680 CTCCACCCACTCGGAATCAG 59.823 60.000 0.00 0.00 34.64 2.90
2217 5758 1.264749 CCTCCACCCACTCGGAATCA 61.265 60.000 0.00 0.00 34.64 2.57
2218 5759 1.522569 CCTCCACCCACTCGGAATC 59.477 63.158 0.00 0.00 34.64 2.52
2219 5760 2.670148 GCCTCCACCCACTCGGAAT 61.670 63.158 0.00 0.00 34.64 3.01
2244 5785 2.036992 CCTATCATCACTGGAGAGCACC 59.963 54.545 0.00 0.00 0.00 5.01
2255 5796 7.758495 ACGGTGTTTTTATTTCCTATCATCAC 58.242 34.615 0.00 0.00 0.00 3.06
2258 5799 8.392612 CGTTACGGTGTTTTTATTTCCTATCAT 58.607 33.333 0.00 0.00 0.00 2.45
2267 5811 6.601741 TTCACTCGTTACGGTGTTTTTATT 57.398 33.333 19.67 0.00 35.26 1.40
2292 5836 2.354821 GACACCAATTTAGCCGCCTAAG 59.645 50.000 0.00 0.00 35.13 2.18
2350 5911 3.438781 TCACCAGTGACTGAAAACAACAC 59.561 43.478 15.33 0.00 34.14 3.32
2351 5912 3.680490 TCACCAGTGACTGAAAACAACA 58.320 40.909 15.33 0.00 34.14 3.33
2412 5973 2.223044 GGAATTCGATCCTTGTGAACGC 60.223 50.000 0.00 0.00 38.95 4.84
2440 6001 6.586844 AGAAAATATAGAAATACGCGAGCTCC 59.413 38.462 15.93 0.00 0.00 4.70
2467 6028 3.838120 TCAGCTCGAATTAGTCACACAG 58.162 45.455 0.00 0.00 0.00 3.66
2468 6029 3.934457 TCAGCTCGAATTAGTCACACA 57.066 42.857 0.00 0.00 0.00 3.72
2512 6073 5.582269 TCCAAGAATCTGTGATCGATTTCAC 59.418 40.000 11.43 11.43 45.05 3.18
2513 6074 5.733676 TCCAAGAATCTGTGATCGATTTCA 58.266 37.500 0.00 1.27 31.62 2.69
2514 6075 5.236047 CCTCCAAGAATCTGTGATCGATTTC 59.764 44.000 0.00 0.00 31.62 2.17
2515 6076 5.104776 TCCTCCAAGAATCTGTGATCGATTT 60.105 40.000 0.00 0.00 31.62 2.17
2516 6077 4.406972 TCCTCCAAGAATCTGTGATCGATT 59.593 41.667 0.00 0.00 34.01 3.34
2517 6078 3.963374 TCCTCCAAGAATCTGTGATCGAT 59.037 43.478 0.00 0.00 0.00 3.59
2518 6079 3.131223 GTCCTCCAAGAATCTGTGATCGA 59.869 47.826 0.00 0.00 0.00 3.59
2519 6080 3.452474 GTCCTCCAAGAATCTGTGATCG 58.548 50.000 0.00 0.00 0.00 3.69
2520 6081 3.118956 ACGTCCTCCAAGAATCTGTGATC 60.119 47.826 0.00 0.00 0.00 2.92
2521 6082 2.834549 ACGTCCTCCAAGAATCTGTGAT 59.165 45.455 0.00 0.00 0.00 3.06
2522 6083 2.029020 CACGTCCTCCAAGAATCTGTGA 60.029 50.000 0.00 0.00 0.00 3.58
2523 6084 2.289072 ACACGTCCTCCAAGAATCTGTG 60.289 50.000 0.00 0.00 0.00 3.66
2524 6085 1.971357 ACACGTCCTCCAAGAATCTGT 59.029 47.619 0.00 0.00 0.00 3.41
2525 6086 2.289072 ACACACGTCCTCCAAGAATCTG 60.289 50.000 0.00 0.00 0.00 2.90
2526 6087 1.971357 ACACACGTCCTCCAAGAATCT 59.029 47.619 0.00 0.00 0.00 2.40
2527 6088 2.069273 CACACACGTCCTCCAAGAATC 58.931 52.381 0.00 0.00 0.00 2.52
2528 6089 1.691976 TCACACACGTCCTCCAAGAAT 59.308 47.619 0.00 0.00 0.00 2.40
2529 6090 1.116308 TCACACACGTCCTCCAAGAA 58.884 50.000 0.00 0.00 0.00 2.52
2530 6091 1.338107 ATCACACACGTCCTCCAAGA 58.662 50.000 0.00 0.00 0.00 3.02
2531 6092 2.169832 AATCACACACGTCCTCCAAG 57.830 50.000 0.00 0.00 0.00 3.61
2532 6093 2.631160 AAATCACACACGTCCTCCAA 57.369 45.000 0.00 0.00 0.00 3.53
2533 6094 2.631160 AAAATCACACACGTCCTCCA 57.369 45.000 0.00 0.00 0.00 3.86
2534 6095 2.875933 TGAAAAATCACACACGTCCTCC 59.124 45.455 0.00 0.00 0.00 4.30
2535 6096 4.378459 GGATGAAAAATCACACACGTCCTC 60.378 45.833 0.00 0.00 32.67 3.71
2536 6097 3.502211 GGATGAAAAATCACACACGTCCT 59.498 43.478 0.00 0.00 32.67 3.85
2537 6098 3.252215 TGGATGAAAAATCACACACGTCC 59.748 43.478 0.00 0.00 35.00 4.79
2538 6099 4.481930 TGGATGAAAAATCACACACGTC 57.518 40.909 0.00 0.00 0.00 4.34
2539 6100 5.009510 TCAATGGATGAAAAATCACACACGT 59.990 36.000 0.00 0.00 34.30 4.49
2540 6101 5.459768 TCAATGGATGAAAAATCACACACG 58.540 37.500 0.00 0.00 34.30 4.49
2552 6113 6.491714 TTGTTTTTCCCTTCAATGGATGAA 57.508 33.333 0.00 0.00 45.71 2.57
2553 6114 6.491714 TTTGTTTTTCCCTTCAATGGATGA 57.508 33.333 0.00 0.00 35.85 2.92
2554 6115 6.348704 GCATTTGTTTTTCCCTTCAATGGATG 60.349 38.462 0.00 0.00 0.00 3.51
2555 6116 5.706833 GCATTTGTTTTTCCCTTCAATGGAT 59.293 36.000 0.00 0.00 0.00 3.41
2556 6117 5.062528 GCATTTGTTTTTCCCTTCAATGGA 58.937 37.500 0.00 0.00 0.00 3.41
2557 6118 4.820716 TGCATTTGTTTTTCCCTTCAATGG 59.179 37.500 0.00 0.00 0.00 3.16
2558 6119 6.563222 ATGCATTTGTTTTTCCCTTCAATG 57.437 33.333 0.00 0.00 0.00 2.82
2559 6120 6.515365 GCAATGCATTTGTTTTTCCCTTCAAT 60.515 34.615 9.83 0.00 37.65 2.57
2560 6121 5.221009 GCAATGCATTTGTTTTTCCCTTCAA 60.221 36.000 9.83 0.00 37.65 2.69
2561 6122 4.275443 GCAATGCATTTGTTTTTCCCTTCA 59.725 37.500 9.83 0.00 37.65 3.02
2562 6123 4.320421 GGCAATGCATTTGTTTTTCCCTTC 60.320 41.667 9.83 0.00 37.65 3.46
2563 6124 3.569277 GGCAATGCATTTGTTTTTCCCTT 59.431 39.130 9.83 0.00 37.65 3.95
2564 6125 3.148412 GGCAATGCATTTGTTTTTCCCT 58.852 40.909 9.83 0.00 37.65 4.20
2565 6126 2.883386 TGGCAATGCATTTGTTTTTCCC 59.117 40.909 9.83 2.36 37.65 3.97
2566 6127 4.564940 TTGGCAATGCATTTGTTTTTCC 57.435 36.364 9.83 3.43 37.65 3.13
2567 6128 4.437171 CGTTTGGCAATGCATTTGTTTTTC 59.563 37.500 9.83 0.00 37.65 2.29
2568 6129 4.349501 CGTTTGGCAATGCATTTGTTTTT 58.650 34.783 9.83 0.00 37.65 1.94
2569 6130 3.791455 GCGTTTGGCAATGCATTTGTTTT 60.791 39.130 9.83 0.00 43.52 2.43
2570 6131 2.286891 GCGTTTGGCAATGCATTTGTTT 60.287 40.909 9.83 0.00 43.52 2.83
2571 6132 1.263752 GCGTTTGGCAATGCATTTGTT 59.736 42.857 9.83 0.00 43.52 2.83
2572 6133 0.867086 GCGTTTGGCAATGCATTTGT 59.133 45.000 9.83 0.00 43.52 2.83
2573 6134 0.166379 GGCGTTTGGCAATGCATTTG 59.834 50.000 21.57 6.84 45.56 2.32
2574 6135 1.290491 CGGCGTTTGGCAATGCATTT 61.290 50.000 21.57 0.00 45.56 2.32
2575 6136 1.737371 CGGCGTTTGGCAATGCATT 60.737 52.632 21.57 5.99 45.56 3.56
2576 6137 2.125991 CGGCGTTTGGCAATGCAT 60.126 55.556 21.57 0.00 45.56 3.96
2577 6138 2.745906 CTTCGGCGTTTGGCAATGCA 62.746 55.000 21.57 0.00 45.56 3.96
2578 6139 2.049618 TTCGGCGTTTGGCAATGC 60.050 55.556 14.50 14.50 46.16 3.56
2579 6140 1.444212 CCTTCGGCGTTTGGCAATG 60.444 57.895 6.85 0.00 46.16 2.82
2580 6141 2.635443 CCCTTCGGCGTTTGGCAAT 61.635 57.895 6.85 0.00 46.16 3.56
2581 6142 3.291383 CCCTTCGGCGTTTGGCAA 61.291 61.111 6.85 0.00 46.16 4.52
2582 6143 4.257654 TCCCTTCGGCGTTTGGCA 62.258 61.111 6.85 0.00 46.16 4.92
2583 6144 3.431725 CTCCCTTCGGCGTTTGGC 61.432 66.667 6.85 0.00 42.51 4.52
2584 6145 2.746277 CCTCCCTTCGGCGTTTGG 60.746 66.667 6.85 7.68 0.00 3.28
2585 6146 3.431725 GCCTCCCTTCGGCGTTTG 61.432 66.667 6.85 0.00 37.87 2.93
2598 6159 4.203226 CTCTTGATTTAAAGGAGGGCCTC 58.797 47.826 25.80 25.80 46.28 4.70
2600 6161 3.948473 GACTCTTGATTTAAAGGAGGGCC 59.052 47.826 0.00 0.00 0.00 5.80
2601 6162 4.396478 GTGACTCTTGATTTAAAGGAGGGC 59.604 45.833 11.92 6.74 0.00 5.19
2602 6163 5.560724 TGTGACTCTTGATTTAAAGGAGGG 58.439 41.667 11.92 5.06 0.00 4.30
2603 6164 6.234177 ACTGTGACTCTTGATTTAAAGGAGG 58.766 40.000 11.92 0.00 0.00 4.30
2604 6165 6.931281 TGACTGTGACTCTTGATTTAAAGGAG 59.069 38.462 0.00 2.07 0.00 3.69
2605 6166 6.826668 TGACTGTGACTCTTGATTTAAAGGA 58.173 36.000 0.00 0.00 0.00 3.36
2606 6167 7.678947 ATGACTGTGACTCTTGATTTAAAGG 57.321 36.000 0.00 0.00 0.00 3.11
2607 6168 8.877779 CCTATGACTGTGACTCTTGATTTAAAG 58.122 37.037 0.00 0.00 0.00 1.85
2608 6169 7.334421 GCCTATGACTGTGACTCTTGATTTAAA 59.666 37.037 0.00 0.00 0.00 1.52
2609 6170 6.818644 GCCTATGACTGTGACTCTTGATTTAA 59.181 38.462 0.00 0.00 0.00 1.52
2610 6171 6.155221 AGCCTATGACTGTGACTCTTGATTTA 59.845 38.462 0.00 0.00 0.00 1.40
2611 6172 5.046014 AGCCTATGACTGTGACTCTTGATTT 60.046 40.000 0.00 0.00 0.00 2.17
2612 6173 4.469227 AGCCTATGACTGTGACTCTTGATT 59.531 41.667 0.00 0.00 0.00 2.57
2613 6174 4.029520 AGCCTATGACTGTGACTCTTGAT 58.970 43.478 0.00 0.00 0.00 2.57
2614 6175 3.435275 AGCCTATGACTGTGACTCTTGA 58.565 45.455 0.00 0.00 0.00 3.02
2615 6176 3.446873 AGAGCCTATGACTGTGACTCTTG 59.553 47.826 0.00 0.00 28.93 3.02
2616 6177 3.707316 AGAGCCTATGACTGTGACTCTT 58.293 45.455 0.00 0.00 28.93 2.85
2617 6178 3.380471 AGAGCCTATGACTGTGACTCT 57.620 47.619 0.00 0.00 0.00 3.24
2618 6179 3.699038 AGAAGAGCCTATGACTGTGACTC 59.301 47.826 0.00 0.00 0.00 3.36
2619 6180 3.707316 AGAAGAGCCTATGACTGTGACT 58.293 45.455 0.00 0.00 0.00 3.41
2620 6181 4.464069 AAGAAGAGCCTATGACTGTGAC 57.536 45.455 0.00 0.00 0.00 3.67
2621 6182 6.798427 AATAAGAAGAGCCTATGACTGTGA 57.202 37.500 0.00 0.00 0.00 3.58
2622 6183 7.856145 AAAATAAGAAGAGCCTATGACTGTG 57.144 36.000 0.00 0.00 0.00 3.66
2623 6184 8.325046 AGAAAAATAAGAAGAGCCTATGACTGT 58.675 33.333 0.00 0.00 0.00 3.55
2624 6185 8.729805 AGAAAAATAAGAAGAGCCTATGACTG 57.270 34.615 0.00 0.00 0.00 3.51
2625 6186 8.767436 AGAGAAAAATAAGAAGAGCCTATGACT 58.233 33.333 0.00 0.00 0.00 3.41
2626 6187 8.956533 AGAGAAAAATAAGAAGAGCCTATGAC 57.043 34.615 0.00 0.00 0.00 3.06
2627 6188 9.388506 CAAGAGAAAAATAAGAAGAGCCTATGA 57.611 33.333 0.00 0.00 0.00 2.15
2628 6189 9.171877 ACAAGAGAAAAATAAGAAGAGCCTATG 57.828 33.333 0.00 0.00 0.00 2.23
2629 6190 9.389755 GACAAGAGAAAAATAAGAAGAGCCTAT 57.610 33.333 0.00 0.00 0.00 2.57
2630 6191 8.375506 TGACAAGAGAAAAATAAGAAGAGCCTA 58.624 33.333 0.00 0.00 0.00 3.93
2631 6192 7.227156 TGACAAGAGAAAAATAAGAAGAGCCT 58.773 34.615 0.00 0.00 0.00 4.58
2632 6193 7.389053 TCTGACAAGAGAAAAATAAGAAGAGCC 59.611 37.037 0.00 0.00 0.00 4.70
2633 6194 8.316640 TCTGACAAGAGAAAAATAAGAAGAGC 57.683 34.615 0.00 0.00 0.00 4.09
2649 6210 2.001076 TCTGTGAGGCTCTGACAAGA 57.999 50.000 16.72 8.32 25.67 3.02
2650 6211 2.827800 TTCTGTGAGGCTCTGACAAG 57.172 50.000 16.72 6.16 25.67 3.16
2651 6212 3.470709 CTTTTCTGTGAGGCTCTGACAA 58.529 45.455 16.72 9.44 25.67 3.18
2652 6213 2.224378 CCTTTTCTGTGAGGCTCTGACA 60.224 50.000 16.72 11.54 0.00 3.58
2653 6214 2.421619 CCTTTTCTGTGAGGCTCTGAC 58.578 52.381 16.72 7.06 0.00 3.51
2654 6215 2.847327 CCTTTTCTGTGAGGCTCTGA 57.153 50.000 16.72 8.54 0.00 3.27
2660 6221 3.438087 CACATACAGCCTTTTCTGTGAGG 59.562 47.826 6.67 0.00 45.95 3.86
2661 6222 4.067896 ACACATACAGCCTTTTCTGTGAG 58.932 43.478 7.42 2.26 45.95 3.51
2662 6223 4.085357 ACACATACAGCCTTTTCTGTGA 57.915 40.909 7.42 0.00 45.95 3.58
2663 6224 4.516698 AGAACACATACAGCCTTTTCTGTG 59.483 41.667 6.67 0.00 45.95 3.66
2665 6226 5.695851 AAGAACACATACAGCCTTTTCTG 57.304 39.130 0.00 0.00 39.86 3.02
2666 6227 6.064717 AGAAAGAACACATACAGCCTTTTCT 58.935 36.000 0.00 0.00 0.00 2.52
2667 6228 6.319141 AGAAAGAACACATACAGCCTTTTC 57.681 37.500 0.00 0.00 0.00 2.29
2668 6229 6.715347 AAGAAAGAACACATACAGCCTTTT 57.285 33.333 0.00 0.00 0.00 2.27
2669 6230 6.715347 AAAGAAAGAACACATACAGCCTTT 57.285 33.333 0.00 0.00 0.00 3.11
2670 6231 6.715347 AAAAGAAAGAACACATACAGCCTT 57.285 33.333 0.00 0.00 0.00 4.35
2671 6232 6.096846 ACAAAAAGAAAGAACACATACAGCCT 59.903 34.615 0.00 0.00 0.00 4.58
2672 6233 6.273071 ACAAAAAGAAAGAACACATACAGCC 58.727 36.000 0.00 0.00 0.00 4.85
2673 6234 7.755582 AACAAAAAGAAAGAACACATACAGC 57.244 32.000 0.00 0.00 0.00 4.40
2697 6258 3.181474 CCGGCCAAGTAAGAAACCAAAAA 60.181 43.478 2.24 0.00 0.00 1.94
2698 6259 2.362717 CCGGCCAAGTAAGAAACCAAAA 59.637 45.455 2.24 0.00 0.00 2.44
2699 6260 1.957877 CCGGCCAAGTAAGAAACCAAA 59.042 47.619 2.24 0.00 0.00 3.28
2700 6261 1.611519 CCGGCCAAGTAAGAAACCAA 58.388 50.000 2.24 0.00 0.00 3.67
2701 6262 0.891904 GCCGGCCAAGTAAGAAACCA 60.892 55.000 18.11 0.00 0.00 3.67
2702 6263 1.592400 GGCCGGCCAAGTAAGAAACC 61.592 60.000 40.73 7.78 35.81 3.27
2703 6264 0.891904 TGGCCGGCCAAGTAAGAAAC 60.892 55.000 45.50 15.12 44.12 2.78
2704 6265 0.608035 CTGGCCGGCCAAGTAAGAAA 60.608 55.000 45.17 22.26 46.63 2.52
2705 6266 1.002624 CTGGCCGGCCAAGTAAGAA 60.003 57.895 45.17 23.03 46.63 2.52
2706 6267 2.668632 CTGGCCGGCCAAGTAAGA 59.331 61.111 45.17 23.82 46.63 2.10
2707 6268 3.134127 GCTGGCCGGCCAAGTAAG 61.134 66.667 45.17 34.00 46.63 2.34
2708 6269 3.646715 AGCTGGCCGGCCAAGTAA 61.647 61.111 45.17 25.38 46.63 2.24
2709 6270 4.408821 CAGCTGGCCGGCCAAGTA 62.409 66.667 45.17 25.78 46.63 2.24
2731 6292 2.137177 TAAGAGCTGGTTGGTGGGCC 62.137 60.000 0.00 0.00 0.00 5.80
2732 6293 0.678048 CTAAGAGCTGGTTGGTGGGC 60.678 60.000 0.00 0.00 0.00 5.36
2733 6294 0.035056 CCTAAGAGCTGGTTGGTGGG 60.035 60.000 0.00 0.00 0.00 4.61
2734 6295 0.678048 GCCTAAGAGCTGGTTGGTGG 60.678 60.000 0.00 0.00 0.00 4.61
2735 6296 0.036732 TGCCTAAGAGCTGGTTGGTG 59.963 55.000 0.00 0.00 0.00 4.17
2736 6297 0.036875 GTGCCTAAGAGCTGGTTGGT 59.963 55.000 0.00 0.00 0.00 3.67
2737 6298 0.036732 TGTGCCTAAGAGCTGGTTGG 59.963 55.000 0.00 0.00 0.00 3.77
2738 6299 1.896220 TTGTGCCTAAGAGCTGGTTG 58.104 50.000 0.00 0.00 0.00 3.77
2739 6300 2.887151 ATTGTGCCTAAGAGCTGGTT 57.113 45.000 0.00 0.00 0.00 3.67
2740 6301 3.009033 TGTTATTGTGCCTAAGAGCTGGT 59.991 43.478 0.00 0.00 0.00 4.00
2741 6302 3.609853 TGTTATTGTGCCTAAGAGCTGG 58.390 45.455 0.00 0.00 0.00 4.85
2742 6303 3.064545 GCTGTTATTGTGCCTAAGAGCTG 59.935 47.826 0.00 0.00 40.46 4.24
2743 6304 3.274288 GCTGTTATTGTGCCTAAGAGCT 58.726 45.455 5.30 0.00 40.46 4.09
2744 6305 3.682372 GCTGTTATTGTGCCTAAGAGC 57.318 47.619 0.00 0.00 38.01 4.09
3074 6635 2.768344 ACGGCTACCATCTGGGGG 60.768 66.667 0.54 0.00 42.91 5.40
3075 6636 2.032860 CTCACGGCTACCATCTGGGG 62.033 65.000 0.54 0.00 42.91 4.96
3076 6637 1.043116 TCTCACGGCTACCATCTGGG 61.043 60.000 0.54 0.00 44.81 4.45
3077 6638 0.824109 TTCTCACGGCTACCATCTGG 59.176 55.000 0.00 0.00 42.17 3.86
3078 6639 2.672961 TTTCTCACGGCTACCATCTG 57.327 50.000 0.00 0.00 0.00 2.90
3079 6640 2.223829 CGATTTCTCACGGCTACCATCT 60.224 50.000 0.00 0.00 0.00 2.90
3080 6641 2.128035 CGATTTCTCACGGCTACCATC 58.872 52.381 0.00 0.00 0.00 3.51
3081 6642 1.806623 GCGATTTCTCACGGCTACCAT 60.807 52.381 0.00 0.00 0.00 3.55
3082 6643 0.459585 GCGATTTCTCACGGCTACCA 60.460 55.000 0.00 0.00 0.00 3.25
3083 6644 2.298593 GCGATTTCTCACGGCTACC 58.701 57.895 0.00 0.00 0.00 3.18
3088 6649 3.564027 GCCGGCGATTTCTCACGG 61.564 66.667 12.58 0.00 41.79 4.94
3089 6650 3.913573 CGCCGGCGATTTCTCACG 61.914 66.667 44.86 10.04 42.83 4.35
3106 6667 0.376502 GGAGGACTACGACGTGCTAC 59.623 60.000 11.56 0.00 35.61 3.58
3107 6668 0.745845 GGGAGGACTACGACGTGCTA 60.746 60.000 11.56 0.00 35.61 3.49
3108 6669 2.045131 GGGAGGACTACGACGTGCT 61.045 63.158 11.56 3.02 38.35 4.40
3109 6670 2.267681 CTGGGAGGACTACGACGTGC 62.268 65.000 11.56 0.00 0.00 5.34
3110 6671 1.654954 CCTGGGAGGACTACGACGTG 61.655 65.000 11.56 3.29 37.67 4.49
3111 6672 1.378250 CCTGGGAGGACTACGACGT 60.378 63.158 5.52 5.52 37.67 4.34
3112 6673 1.378250 ACCTGGGAGGACTACGACG 60.378 63.158 0.00 0.00 37.67 5.12
3113 6674 1.321074 CCACCTGGGAGGACTACGAC 61.321 65.000 0.00 0.00 37.67 4.34
3114 6675 1.000019 CCACCTGGGAGGACTACGA 60.000 63.158 0.00 0.00 37.67 3.43
3115 6676 2.722201 GCCACCTGGGAGGACTACG 61.722 68.421 11.16 0.00 37.67 3.51
3116 6677 2.368011 GGCCACCTGGGAGGACTAC 61.368 68.421 11.16 0.00 37.67 2.73
3117 6678 2.040606 GGCCACCTGGGAGGACTA 59.959 66.667 11.16 0.00 37.67 2.59
3120 6681 3.943137 ATTCGGCCACCTGGGAGGA 62.943 63.158 2.24 0.00 37.67 3.71
3121 6682 3.406595 GATTCGGCCACCTGGGAGG 62.407 68.421 2.24 0.22 42.49 4.30
3122 6683 2.190578 GATTCGGCCACCTGGGAG 59.809 66.667 2.24 0.00 40.01 4.30
3123 6684 3.407967 GGATTCGGCCACCTGGGA 61.408 66.667 2.24 0.00 40.01 4.37
3124 6685 4.856801 CGGATTCGGCCACCTGGG 62.857 72.222 2.24 0.00 40.85 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.