Multiple sequence alignment - TraesCS2A01G539300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G539300 chr2A 100.000 2952 0 0 1 2952 751661481 751664432 0.000000e+00 5452.0
1 TraesCS2A01G539300 chr2A 80.728 467 62 19 1371 1815 751609238 751609698 3.640000e-89 339.0
2 TraesCS2A01G539300 chr2A 82.192 365 41 14 1191 1537 751546702 751547060 2.880000e-75 292.0
3 TraesCS2A01G539300 chr2A 88.462 156 11 7 1190 1341 751609016 751609168 6.500000e-42 182.0
4 TraesCS2A01G539300 chr2A 82.569 109 12 3 1987 2088 751547814 751547922 4.050000e-14 89.8
5 TraesCS2A01G539300 chr2D 86.615 904 45 26 1854 2709 620199511 620200386 0.000000e+00 929.0
6 TraesCS2A01G539300 chr2D 83.459 532 27 27 825 1339 620198605 620199092 3.490000e-119 438.0
7 TraesCS2A01G539300 chr2D 88.235 374 29 6 1351 1724 620199153 620199511 1.630000e-117 433.0
8 TraesCS2A01G539300 chr2D 79.420 690 81 39 1190 1838 620193758 620194427 5.850000e-117 431.0
9 TraesCS2A01G539300 chr2D 86.689 293 22 9 1 280 620197757 620198045 2.860000e-80 309.0
10 TraesCS2A01G539300 chr2D 78.017 464 49 30 1381 1822 620153896 620154328 2.940000e-60 243.0
11 TraesCS2A01G539300 chr2D 74.349 499 85 31 1190 1649 620447836 620448330 3.910000e-39 172.0
12 TraesCS2A01G539300 chr2D 84.354 147 15 6 1191 1332 620153658 620153801 1.430000e-28 137.0
13 TraesCS2A01G539300 chr2D 83.516 91 8 3 2005 2088 620154810 620154900 8.770000e-11 78.7
14 TraesCS2A01G539300 chr2B 84.274 833 61 35 1866 2641 759884450 759885269 0.000000e+00 749.0
15 TraesCS2A01G539300 chr2B 87.671 584 51 15 1351 1920 759818012 759818588 0.000000e+00 660.0
16 TraesCS2A01G539300 chr2B 80.028 726 69 35 634 1341 759817292 759817959 4.460000e-128 468.0
17 TraesCS2A01G539300 chr2B 80.059 682 79 38 1190 1838 759765459 759766116 1.250000e-123 453.0
18 TraesCS2A01G539300 chr2B 81.356 413 34 25 1 394 759816506 759816894 2.220000e-76 296.0
19 TraesCS2A01G539300 chr2B 89.671 213 21 1 857 1069 759837369 759837580 1.350000e-68 270.0
20 TraesCS2A01G539300 chr2B 91.257 183 15 1 2263 2444 759982117 759982299 6.320000e-62 248.0
21 TraesCS2A01G539300 chr2B 77.333 450 64 21 1381 1822 759677137 759677556 6.360000e-57 231.0
22 TraesCS2A01G539300 chr2B 90.643 171 10 2 1686 1851 759882884 759883053 3.830000e-54 222.0
23 TraesCS2A01G539300 chr2B 81.712 257 31 9 1059 1307 759881780 759882028 1.790000e-47 200.0
24 TraesCS2A01G539300 chr2B 88.435 147 12 4 2089 2235 759980577 759980718 3.910000e-39 172.0
25 TraesCS2A01G539300 chr2B 82.993 147 17 4 1191 1332 759741839 759741982 3.090000e-25 126.0
26 TraesCS2A01G539300 chr2B 77.876 226 23 13 1557 1767 759742198 759742411 6.690000e-22 115.0
27 TraesCS2A01G539300 chr2B 89.610 77 8 0 1227 1303 760263971 760264047 6.730000e-17 99.0
28 TraesCS2A01G539300 chrUn 77.333 450 64 21 1381 1822 23148850 23148431 6.360000e-57 231.0
29 TraesCS2A01G539300 chr1A 100.000 29 0 0 2752 2780 547571919 547571947 1.000000e-03 54.7
30 TraesCS2A01G539300 chr6A 100.000 28 0 0 2743 2770 504489770 504489743 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G539300 chr2A 751661481 751664432 2951 False 5452.000000 5452 100.000000 1 2952 1 chr2A.!!$F1 2951
1 TraesCS2A01G539300 chr2A 751609016 751609698 682 False 260.500000 339 84.595000 1190 1815 2 chr2A.!!$F3 625
2 TraesCS2A01G539300 chr2D 620193758 620200386 6628 False 508.000000 929 84.883600 1 2709 5 chr2D.!!$F3 2708
3 TraesCS2A01G539300 chr2B 759816506 759818588 2082 False 474.666667 660 83.018333 1 1920 3 chr2B.!!$F6 1919
4 TraesCS2A01G539300 chr2B 759765459 759766116 657 False 453.000000 453 80.059000 1190 1838 1 chr2B.!!$F2 648
5 TraesCS2A01G539300 chr2B 759881780 759885269 3489 False 390.333333 749 85.543000 1059 2641 3 chr2B.!!$F7 1582
6 TraesCS2A01G539300 chr2B 759980577 759982299 1722 False 210.000000 248 89.846000 2089 2444 2 chr2B.!!$F8 355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 4878 0.036483 TGTGCTCGCAATCAAGCCTA 60.036 50.0 0.0 0.0 37.73 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 8324 0.17576 TGCACGAGAGCCCAATCTAC 59.824 55.0 0.0 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 4021 4.516365 CGGTAGAACTAGGTGACAGTTT 57.484 45.455 0.00 0.00 36.38 2.66
73 4077 0.451628 CAGTGCGCGTGTGATTCTTG 60.452 55.000 8.43 0.00 0.00 3.02
123 4127 0.169672 ACGTGAAAGCTCATGCATGC 59.830 50.000 22.25 11.82 41.60 4.06
142 4151 1.576421 GTTTGACTCCAGCCGCAAG 59.424 57.895 0.00 0.00 0.00 4.01
183 4196 1.071299 TTCTCTGCCGCTTCAAGCA 59.929 52.632 10.73 0.00 42.58 3.91
185 4198 1.670406 CTCTGCCGCTTCAAGCACT 60.670 57.895 10.73 0.00 42.58 4.40
187 4200 3.020026 CTGCCGCTTCAAGCACTCG 62.020 63.158 10.73 0.00 42.58 4.18
188 4201 4.451652 GCCGCTTCAAGCACTCGC 62.452 66.667 10.73 0.95 42.58 5.03
189 4202 3.043713 CCGCTTCAAGCACTCGCA 61.044 61.111 10.73 0.00 42.58 5.10
190 4203 2.393768 CCGCTTCAAGCACTCGCAT 61.394 57.895 10.73 0.00 42.58 4.73
211 4224 1.002033 GCACTGCCAGTTCTTCAACAG 60.002 52.381 0.00 0.00 34.60 3.16
256 4269 3.691118 ACGTAGTACCATTCGTGAGCTAA 59.309 43.478 0.00 0.00 41.94 3.09
258 4271 4.437794 CGTAGTACCATTCGTGAGCTAACA 60.438 45.833 1.15 0.00 0.00 2.41
292 4330 2.668212 GTACGGGCTGTTGCTGCA 60.668 61.111 3.31 0.00 39.59 4.41
309 4347 3.003689 GCTGCACATCGCCACTAATTATT 59.996 43.478 0.00 0.00 41.33 1.40
409 4484 2.046892 GATCCATCCATCGGCCGG 60.047 66.667 27.83 10.29 0.00 6.13
413 4488 4.626081 CATCCATCGGCCGGGGAC 62.626 72.222 32.48 0.00 32.60 4.46
456 4732 2.358247 TTCCTTCTTGCCGTCGCC 60.358 61.111 0.00 0.00 0.00 5.54
464 4740 4.673298 TGCCGTCGCCGTTGTGAT 62.673 61.111 0.00 0.00 32.72 3.06
466 4742 2.795389 GCCGTCGCCGTTGTGATAC 61.795 63.158 0.00 0.00 32.72 2.24
505 4781 2.367512 GCAGGAGGGACAGGGGAT 60.368 66.667 0.00 0.00 0.00 3.85
514 4797 1.044611 GGACAGGGGATGAGCTCTAC 58.955 60.000 16.19 8.63 0.00 2.59
519 4802 2.114616 AGGGGATGAGCTCTACACTTG 58.885 52.381 16.19 0.00 0.00 3.16
563 4846 0.755698 GACAGGACAGGCTCCCGATA 60.756 60.000 0.00 0.00 40.53 2.92
566 4849 1.209504 CAGGACAGGCTCCCGATAAAA 59.790 52.381 0.00 0.00 40.53 1.52
593 4876 0.171903 AATGTGCTCGCAATCAAGCC 59.828 50.000 0.00 0.00 37.73 4.35
594 4877 0.679002 ATGTGCTCGCAATCAAGCCT 60.679 50.000 0.00 0.00 37.73 4.58
595 4878 0.036483 TGTGCTCGCAATCAAGCCTA 60.036 50.000 0.00 0.00 37.73 3.93
597 4880 0.744414 TGCTCGCAATCAAGCCTACC 60.744 55.000 0.00 0.00 37.73 3.18
598 4881 1.766143 GCTCGCAATCAAGCCTACCG 61.766 60.000 0.00 0.00 32.22 4.02
599 4882 0.460284 CTCGCAATCAAGCCTACCGT 60.460 55.000 0.00 0.00 0.00 4.83
601 4884 1.705337 CGCAATCAAGCCTACCGTGG 61.705 60.000 0.00 0.00 0.00 4.94
608 4891 2.125106 GCCTACCGTGGCCAGAAG 60.125 66.667 5.11 0.00 46.82 2.85
609 4892 2.125106 CCTACCGTGGCCAGAAGC 60.125 66.667 5.11 0.00 42.60 3.86
610 4893 2.509336 CTACCGTGGCCAGAAGCG 60.509 66.667 5.11 5.98 45.17 4.68
611 4894 3.296709 CTACCGTGGCCAGAAGCGT 62.297 63.158 5.11 0.00 45.17 5.07
612 4895 3.583276 TACCGTGGCCAGAAGCGTG 62.583 63.158 5.11 2.99 45.17 5.34
618 4901 4.742201 GCCAGAAGCGTGCGAGGA 62.742 66.667 0.00 0.00 0.00 3.71
619 4902 2.811317 CCAGAAGCGTGCGAGGAC 60.811 66.667 0.00 0.00 0.00 3.85
620 4903 2.259818 CAGAAGCGTGCGAGGACT 59.740 61.111 0.00 0.00 0.00 3.85
621 4904 1.803519 CAGAAGCGTGCGAGGACTC 60.804 63.158 0.00 0.00 0.00 3.36
622 4905 2.507324 GAAGCGTGCGAGGACTCC 60.507 66.667 0.00 0.00 0.00 3.85
623 4906 4.421479 AAGCGTGCGAGGACTCCG 62.421 66.667 0.00 0.00 0.00 4.63
715 5004 1.804326 CCACGAACACGACGATCCC 60.804 63.158 0.00 0.00 34.70 3.85
716 5005 1.804326 CACGAACACGACGATCCCC 60.804 63.158 0.00 0.00 34.70 4.81
718 5007 1.080366 CGAACACGACGATCCCCAA 60.080 57.895 0.00 0.00 0.00 4.12
722 5011 3.782443 ACGACGATCCCCAAGCCC 61.782 66.667 0.00 0.00 0.00 5.19
723 5012 3.781307 CGACGATCCCCAAGCCCA 61.781 66.667 0.00 0.00 0.00 5.36
724 5013 2.124695 GACGATCCCCAAGCCCAC 60.125 66.667 0.00 0.00 0.00 4.61
725 5014 2.933287 ACGATCCCCAAGCCCACA 60.933 61.111 0.00 0.00 0.00 4.17
726 5015 2.438434 CGATCCCCAAGCCCACAC 60.438 66.667 0.00 0.00 0.00 3.82
727 5016 2.438434 GATCCCCAAGCCCACACG 60.438 66.667 0.00 0.00 0.00 4.49
728 5017 3.995506 GATCCCCAAGCCCACACGG 62.996 68.421 0.00 0.00 0.00 4.94
744 5033 4.704833 GGCTCCGCTCTGCACCAA 62.705 66.667 0.00 0.00 0.00 3.67
745 5034 2.437359 GCTCCGCTCTGCACCAAT 60.437 61.111 0.00 0.00 0.00 3.16
746 5035 1.153369 GCTCCGCTCTGCACCAATA 60.153 57.895 0.00 0.00 0.00 1.90
747 5036 0.744414 GCTCCGCTCTGCACCAATAA 60.744 55.000 0.00 0.00 0.00 1.40
748 5037 1.737838 CTCCGCTCTGCACCAATAAA 58.262 50.000 0.00 0.00 0.00 1.40
749 5038 1.398390 CTCCGCTCTGCACCAATAAAC 59.602 52.381 0.00 0.00 0.00 2.01
750 5039 1.164411 CCGCTCTGCACCAATAAACA 58.836 50.000 0.00 0.00 0.00 2.83
751 5040 1.539388 CCGCTCTGCACCAATAAACAA 59.461 47.619 0.00 0.00 0.00 2.83
752 5041 2.414559 CCGCTCTGCACCAATAAACAAG 60.415 50.000 0.00 0.00 0.00 3.16
753 5042 2.226437 CGCTCTGCACCAATAAACAAGT 59.774 45.455 0.00 0.00 0.00 3.16
754 5043 3.667960 CGCTCTGCACCAATAAACAAGTC 60.668 47.826 0.00 0.00 0.00 3.01
755 5044 3.366374 GCTCTGCACCAATAAACAAGTCC 60.366 47.826 0.00 0.00 0.00 3.85
756 5045 3.153919 TCTGCACCAATAAACAAGTCCC 58.846 45.455 0.00 0.00 0.00 4.46
768 5057 3.067684 ACAAGTCCCTAAACCATTCCG 57.932 47.619 0.00 0.00 0.00 4.30
785 5074 1.002315 TCCGCTAACCCTGGTTACAAC 59.998 52.381 4.66 0.00 39.31 3.32
850 5148 3.425713 CTGTCACGCAGCGCCATT 61.426 61.111 16.61 0.00 38.52 3.16
855 5153 1.081242 CACGCAGCGCCATTCTTTT 60.081 52.632 16.61 0.00 0.00 2.27
860 5158 2.877691 GCGCCATTCTTTTCCGCT 59.122 55.556 0.00 0.00 41.28 5.52
870 5168 3.462483 TCTTTTCCGCTACACTTGTCA 57.538 42.857 0.00 0.00 0.00 3.58
945 5243 4.354212 CTTGGTCACGTGCGTGCG 62.354 66.667 18.54 0.00 45.04 5.34
977 5275 3.056536 CGCTCTGGCTGCCTATAAGAATA 60.057 47.826 21.03 0.00 36.09 1.75
989 5287 2.653953 TAAGAATACGCCGGCCCTGC 62.654 60.000 23.46 6.87 0.00 4.85
1002 5302 0.688749 GCCCTGCCTCCCAAATCATT 60.689 55.000 0.00 0.00 0.00 2.57
1008 5308 1.447317 CCTCCCAAATCATTCCGCGG 61.447 60.000 22.12 22.12 0.00 6.46
1154 5454 2.623416 GACCGAATTGGGAATTGGGATC 59.377 50.000 14.12 6.89 46.19 3.36
1158 5458 3.817647 CGAATTGGGAATTGGGATCTCTC 59.182 47.826 0.00 0.00 0.00 3.20
1164 5464 3.578282 GGGAATTGGGATCTCTCTCTCTC 59.422 52.174 0.00 0.00 0.00 3.20
1165 5465 4.482990 GGAATTGGGATCTCTCTCTCTCT 58.517 47.826 0.00 0.00 0.00 3.10
1166 5466 4.524328 GGAATTGGGATCTCTCTCTCTCTC 59.476 50.000 0.00 0.00 0.00 3.20
1167 5467 5.388654 GAATTGGGATCTCTCTCTCTCTCT 58.611 45.833 0.00 0.00 0.00 3.10
1168 5468 4.437682 TTGGGATCTCTCTCTCTCTCTC 57.562 50.000 0.00 0.00 0.00 3.20
1170 5470 3.648067 TGGGATCTCTCTCTCTCTCTCTC 59.352 52.174 0.00 0.00 0.00 3.20
1173 5473 4.837860 GGATCTCTCTCTCTCTCTCTCTCT 59.162 50.000 0.00 0.00 0.00 3.10
1174 5474 5.047377 GGATCTCTCTCTCTCTCTCTCTCTC 60.047 52.000 0.00 0.00 0.00 3.20
1176 5476 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1178 5478 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
1179 5479 5.596361 TCTCTCTCTCTCTCTCTCTCTCTTC 59.404 48.000 0.00 0.00 0.00 2.87
1180 5480 5.523588 TCTCTCTCTCTCTCTCTCTCTTCT 58.476 45.833 0.00 0.00 0.00 2.85
1181 5481 5.362143 TCTCTCTCTCTCTCTCTCTCTTCTG 59.638 48.000 0.00 0.00 0.00 3.02
1182 5482 5.272402 TCTCTCTCTCTCTCTCTCTTCTGA 58.728 45.833 0.00 0.00 0.00 3.27
1207 5516 6.831727 TTCATGTTTGCTGATCTTGTTTTG 57.168 33.333 0.00 0.00 0.00 2.44
1218 5531 2.354074 CTTGTTTTGCTGGCGGCTGT 62.354 55.000 20.66 0.00 42.39 4.40
1234 5547 1.270550 GCTGTGGAATTCAGGTTGTGG 59.729 52.381 7.93 0.00 33.98 4.17
1302 5615 2.603776 GTCTCCACCCTCCACGGT 60.604 66.667 0.00 0.00 36.18 4.83
1303 5616 1.304713 GTCTCCACCCTCCACGGTA 60.305 63.158 0.00 0.00 33.67 4.02
1304 5617 0.901580 GTCTCCACCCTCCACGGTAA 60.902 60.000 0.00 0.00 33.67 2.85
1341 5660 1.448013 CCTTCTTCTCCGGTTCCGC 60.448 63.158 0.00 0.00 0.00 5.54
1343 5662 2.167398 CTTCTTCTCCGGTTCCGCCA 62.167 60.000 0.00 0.00 36.97 5.69
1346 5666 2.167398 CTTCTCCGGTTCCGCCAGAA 62.167 60.000 17.00 17.00 36.97 3.02
1347 5667 1.550130 TTCTCCGGTTCCGCCAGAAT 61.550 55.000 15.19 0.00 36.69 2.40
1348 5668 1.078426 CTCCGGTTCCGCCAGAATT 60.078 57.895 0.00 0.00 36.69 2.17
1359 5729 2.159212 CCGCCAGAATTTTCATCATGCA 60.159 45.455 0.00 0.00 0.00 3.96
1539 5912 0.899019 AAGGAGGAGAAGAAGGACGC 59.101 55.000 0.00 0.00 0.00 5.19
1580 5974 0.391793 GAAGGAGGGCGACAAGAAGG 60.392 60.000 0.00 0.00 0.00 3.46
1581 5975 0.836400 AAGGAGGGCGACAAGAAGGA 60.836 55.000 0.00 0.00 0.00 3.36
1582 5976 1.219393 GGAGGGCGACAAGAAGGAG 59.781 63.158 0.00 0.00 0.00 3.69
1593 5987 1.134848 CAAGAAGGAGGGCGAGAAGAG 60.135 57.143 0.00 0.00 0.00 2.85
1594 5988 1.142965 GAAGGAGGGCGAGAAGAGC 59.857 63.158 0.00 0.00 0.00 4.09
1595 5989 1.608717 GAAGGAGGGCGAGAAGAGCA 61.609 60.000 0.00 0.00 36.08 4.26
1599 5993 2.821810 GGGCGAGAAGAGCAAGCC 60.822 66.667 0.00 0.00 46.51 4.35
1727 6608 1.414181 CCGATTGCCTCCTCTGTACAT 59.586 52.381 0.00 0.00 0.00 2.29
1735 6616 5.001232 TGCCTCCTCTGTACATTTTTGTAC 58.999 41.667 8.89 8.89 43.49 2.90
1758 6643 4.034258 CGTGTGCTGCTTGCCTGG 62.034 66.667 0.00 0.00 42.00 4.45
1768 6653 1.958205 CTTGCCTGGCGATCGATCC 60.958 63.158 21.57 12.28 0.00 3.36
1791 6676 2.579787 GCCACGGTGATCGACGAG 60.580 66.667 10.28 7.44 42.43 4.18
1834 6733 0.249676 TGTAAGGATTTGCGCCGGTA 59.750 50.000 4.18 0.00 0.00 4.02
1853 6774 7.597743 CGCCGGTAATCTAGTGAGTTTATAAAT 59.402 37.037 1.90 0.00 0.00 1.40
1885 8188 2.795231 ATGGAATCACAGTGTGGAGG 57.205 50.000 22.79 0.00 33.87 4.30
1983 8305 0.510359 GCCGCACAATGAGATCGATC 59.490 55.000 17.91 17.91 0.00 3.69
2002 8324 2.650322 TCCAAAATTAAGGCGGCTAGG 58.350 47.619 13.71 6.16 0.00 3.02
2011 8333 1.122019 AGGCGGCTAGGTAGATTGGG 61.122 60.000 11.03 0.00 0.00 4.12
2082 8404 1.376553 GCTCCACCTGAGAGTTGCC 60.377 63.158 0.00 0.00 44.42 4.52
2091 8427 2.038295 CCTGAGAGTTGCCTTCAGTCTT 59.962 50.000 0.72 0.00 0.00 3.01
2123 8459 5.791336 ACCAAAAGGTCTCCAAGATTTTC 57.209 39.130 0.00 0.00 0.00 2.29
2124 8460 4.588951 ACCAAAAGGTCTCCAAGATTTTCC 59.411 41.667 0.00 0.00 0.00 3.13
2365 10073 4.860352 GCACATTTTAACCGTCCATTAACC 59.140 41.667 0.00 0.00 0.00 2.85
2504 10214 4.686191 ATTTTGTTTGGAAGATGCACCA 57.314 36.364 0.00 0.00 0.00 4.17
2518 10229 1.284982 GCACCAGCACGTACACTCAG 61.285 60.000 0.00 0.00 41.58 3.35
2575 10286 2.363680 AGGATTGACGAGCTCACCATAG 59.636 50.000 15.40 0.00 0.00 2.23
2599 10330 7.836842 AGGTTTATCGCCTTTGTTGAAATAAT 58.163 30.769 0.00 0.00 31.04 1.28
2600 10331 8.962679 AGGTTTATCGCCTTTGTTGAAATAATA 58.037 29.630 0.00 0.00 31.04 0.98
2601 10332 9.744468 GGTTTATCGCCTTTGTTGAAATAATAT 57.256 29.630 0.00 0.00 0.00 1.28
2603 10334 8.795786 TTATCGCCTTTGTTGAAATAATATGC 57.204 30.769 0.00 0.00 0.00 3.14
2604 10335 5.587289 TCGCCTTTGTTGAAATAATATGCC 58.413 37.500 0.00 0.00 0.00 4.40
2605 10336 5.359576 TCGCCTTTGTTGAAATAATATGCCT 59.640 36.000 0.00 0.00 0.00 4.75
2606 10337 5.687285 CGCCTTTGTTGAAATAATATGCCTC 59.313 40.000 0.00 0.00 0.00 4.70
2607 10338 6.572519 GCCTTTGTTGAAATAATATGCCTCA 58.427 36.000 0.00 0.00 0.00 3.86
2608 10339 6.476706 GCCTTTGTTGAAATAATATGCCTCAC 59.523 38.462 0.00 0.00 0.00 3.51
2609 10340 6.980397 CCTTTGTTGAAATAATATGCCTCACC 59.020 38.462 0.00 0.00 0.00 4.02
2610 10341 6.463995 TTGTTGAAATAATATGCCTCACCC 57.536 37.500 0.00 0.00 0.00 4.61
2611 10342 5.514169 TGTTGAAATAATATGCCTCACCCA 58.486 37.500 0.00 0.00 0.00 4.51
2612 10343 5.359576 TGTTGAAATAATATGCCTCACCCAC 59.640 40.000 0.00 0.00 0.00 4.61
2613 10344 5.387113 TGAAATAATATGCCTCACCCACT 57.613 39.130 0.00 0.00 0.00 4.00
2614 10345 5.765510 TGAAATAATATGCCTCACCCACTT 58.234 37.500 0.00 0.00 0.00 3.16
2615 10346 6.905736 TGAAATAATATGCCTCACCCACTTA 58.094 36.000 0.00 0.00 0.00 2.24
2616 10347 6.998074 TGAAATAATATGCCTCACCCACTTAG 59.002 38.462 0.00 0.00 0.00 2.18
2617 10348 6.763715 AATAATATGCCTCACCCACTTAGA 57.236 37.500 0.00 0.00 0.00 2.10
2618 10349 6.763715 ATAATATGCCTCACCCACTTAGAA 57.236 37.500 0.00 0.00 0.00 2.10
2619 10350 5.450818 AATATGCCTCACCCACTTAGAAA 57.549 39.130 0.00 0.00 0.00 2.52
2620 10351 3.806949 ATGCCTCACCCACTTAGAAAA 57.193 42.857 0.00 0.00 0.00 2.29
2621 10352 3.586470 TGCCTCACCCACTTAGAAAAA 57.414 42.857 0.00 0.00 0.00 1.94
2649 10380 4.268405 ACACGGTTTAACTTTGACAGTACG 59.732 41.667 0.00 0.00 32.94 3.67
2704 10435 2.811431 TGCTGGTGTTGGTTCGATTTAG 59.189 45.455 0.00 0.00 0.00 1.85
2709 10440 5.996644 TGGTGTTGGTTCGATTTAGGATAT 58.003 37.500 0.00 0.00 0.00 1.63
2710 10441 7.127012 TGGTGTTGGTTCGATTTAGGATATA 57.873 36.000 0.00 0.00 0.00 0.86
2711 10442 6.987992 TGGTGTTGGTTCGATTTAGGATATAC 59.012 38.462 0.00 0.00 0.00 1.47
2712 10443 7.147620 TGGTGTTGGTTCGATTTAGGATATACT 60.148 37.037 0.00 0.00 0.00 2.12
2713 10444 7.384387 GGTGTTGGTTCGATTTAGGATATACTC 59.616 40.741 0.00 0.00 0.00 2.59
2714 10445 7.384387 GTGTTGGTTCGATTTAGGATATACTCC 59.616 40.741 0.00 0.00 45.33 3.85
2715 10446 6.600882 TGGTTCGATTTAGGATATACTCCC 57.399 41.667 0.00 0.00 46.27 4.30
2716 10447 6.320518 TGGTTCGATTTAGGATATACTCCCT 58.679 40.000 0.00 0.00 46.27 4.20
2717 10448 6.436532 TGGTTCGATTTAGGATATACTCCCTC 59.563 42.308 0.00 0.00 46.27 4.30
2718 10449 6.127394 GGTTCGATTTAGGATATACTCCCTCC 60.127 46.154 0.00 0.00 46.27 4.30
2719 10450 5.191426 TCGATTTAGGATATACTCCCTCCG 58.809 45.833 0.00 0.00 46.27 4.63
2720 10451 4.948621 CGATTTAGGATATACTCCCTCCGT 59.051 45.833 0.00 0.00 46.27 4.69
2721 10452 5.066246 CGATTTAGGATATACTCCCTCCGTC 59.934 48.000 0.00 0.00 46.27 4.79
2722 10453 2.903375 AGGATATACTCCCTCCGTCC 57.097 55.000 0.00 0.00 46.27 4.79
2723 10454 1.004511 AGGATATACTCCCTCCGTCCG 59.995 57.143 0.00 0.00 46.27 4.79
2724 10455 1.461559 GATATACTCCCTCCGTCCGG 58.538 60.000 0.00 0.00 0.00 5.14
2725 10456 0.776176 ATATACTCCCTCCGTCCGGT 59.224 55.000 0.00 0.00 36.47 5.28
2726 10457 1.434188 TATACTCCCTCCGTCCGGTA 58.566 55.000 0.00 0.00 36.47 4.02
2727 10458 0.776176 ATACTCCCTCCGTCCGGTAT 59.224 55.000 0.00 0.00 36.47 2.73
2728 10459 0.179009 TACTCCCTCCGTCCGGTATG 60.179 60.000 0.00 0.00 36.47 2.39
2729 10460 1.152819 CTCCCTCCGTCCGGTATGA 60.153 63.158 0.00 0.00 36.47 2.15
2730 10461 1.152819 TCCCTCCGTCCGGTATGAG 60.153 63.158 0.00 5.62 36.47 2.90
2731 10462 2.201022 CCCTCCGTCCGGTATGAGG 61.201 68.421 21.48 21.48 43.29 3.86
2732 10463 1.152819 CCTCCGTCCGGTATGAGGA 60.153 63.158 23.04 14.80 45.93 3.71
2733 10464 0.754217 CCTCCGTCCGGTATGAGGAA 60.754 60.000 23.04 0.00 45.93 3.36
2734 10465 0.384669 CTCCGTCCGGTATGAGGAAC 59.615 60.000 0.00 0.00 39.84 3.62
2735 10466 0.323633 TCCGTCCGGTATGAGGAACA 60.324 55.000 0.00 0.00 39.84 3.18
2736 10467 0.533491 CCGTCCGGTATGAGGAACAA 59.467 55.000 0.00 0.00 39.84 2.83
2737 10468 1.470979 CCGTCCGGTATGAGGAACAAG 60.471 57.143 0.00 0.00 39.84 3.16
2738 10469 1.653151 GTCCGGTATGAGGAACAAGC 58.347 55.000 0.00 0.00 39.84 4.01
2739 10470 1.207329 GTCCGGTATGAGGAACAAGCT 59.793 52.381 0.00 0.00 39.84 3.74
2740 10471 1.906574 TCCGGTATGAGGAACAAGCTT 59.093 47.619 0.00 0.00 34.33 3.74
2741 10472 3.101437 TCCGGTATGAGGAACAAGCTTA 58.899 45.455 0.00 0.00 34.33 3.09
2742 10473 3.132289 TCCGGTATGAGGAACAAGCTTAG 59.868 47.826 0.00 0.00 34.33 2.18
2743 10474 3.458189 CGGTATGAGGAACAAGCTTAGG 58.542 50.000 0.00 0.00 0.00 2.69
2744 10475 3.132289 CGGTATGAGGAACAAGCTTAGGA 59.868 47.826 0.00 0.00 0.00 2.94
2745 10476 4.443621 GGTATGAGGAACAAGCTTAGGAC 58.556 47.826 0.00 0.00 0.00 3.85
2746 10477 4.081087 GGTATGAGGAACAAGCTTAGGACA 60.081 45.833 0.00 0.00 0.00 4.02
2747 10478 4.851639 ATGAGGAACAAGCTTAGGACAT 57.148 40.909 0.00 0.00 0.00 3.06
2748 10479 3.942829 TGAGGAACAAGCTTAGGACATG 58.057 45.455 0.00 0.00 0.00 3.21
2749 10480 3.274288 GAGGAACAAGCTTAGGACATGG 58.726 50.000 0.00 0.00 0.00 3.66
2750 10481 2.644798 AGGAACAAGCTTAGGACATGGT 59.355 45.455 0.00 0.00 0.00 3.55
2751 10482 3.074538 AGGAACAAGCTTAGGACATGGTT 59.925 43.478 0.00 0.00 0.00 3.67
2752 10483 3.826729 GGAACAAGCTTAGGACATGGTTT 59.173 43.478 0.00 0.00 0.00 3.27
2753 10484 4.280929 GGAACAAGCTTAGGACATGGTTTT 59.719 41.667 0.00 0.00 0.00 2.43
2754 10485 5.221441 GGAACAAGCTTAGGACATGGTTTTT 60.221 40.000 0.00 0.00 0.00 1.94
2771 10502 3.622166 TTTTTGGACGGAGGGAGTATC 57.378 47.619 0.00 0.00 0.00 2.24
2772 10503 2.241281 TTTGGACGGAGGGAGTATCA 57.759 50.000 0.00 0.00 36.25 2.15
2773 10504 1.776662 TTGGACGGAGGGAGTATCAG 58.223 55.000 0.00 0.00 36.25 2.90
2774 10505 0.629596 TGGACGGAGGGAGTATCAGT 59.370 55.000 0.00 0.00 36.25 3.41
2775 10506 1.006758 TGGACGGAGGGAGTATCAGTT 59.993 52.381 0.00 0.00 36.25 3.16
2776 10507 2.108970 GGACGGAGGGAGTATCAGTTT 58.891 52.381 0.00 0.00 36.25 2.66
2777 10508 2.500504 GGACGGAGGGAGTATCAGTTTT 59.499 50.000 0.00 0.00 36.25 2.43
2778 10509 3.430513 GGACGGAGGGAGTATCAGTTTTC 60.431 52.174 0.00 0.00 36.25 2.29
2779 10510 3.442076 ACGGAGGGAGTATCAGTTTTCT 58.558 45.455 0.00 0.00 36.25 2.52
2780 10511 3.447944 ACGGAGGGAGTATCAGTTTTCTC 59.552 47.826 0.00 0.00 36.25 2.87
2781 10512 3.702045 CGGAGGGAGTATCAGTTTTCTCT 59.298 47.826 0.00 0.00 36.25 3.10
2782 10513 4.160626 CGGAGGGAGTATCAGTTTTCTCTT 59.839 45.833 0.00 0.00 36.25 2.85
2783 10514 5.337652 CGGAGGGAGTATCAGTTTTCTCTTT 60.338 44.000 0.00 0.00 36.25 2.52
2784 10515 6.477253 GGAGGGAGTATCAGTTTTCTCTTTT 58.523 40.000 0.00 0.00 36.25 2.27
2785 10516 6.372937 GGAGGGAGTATCAGTTTTCTCTTTTG 59.627 42.308 0.00 0.00 36.25 2.44
2786 10517 6.241645 AGGGAGTATCAGTTTTCTCTTTTGG 58.758 40.000 0.00 0.00 36.25 3.28
2787 10518 6.044404 AGGGAGTATCAGTTTTCTCTTTTGGA 59.956 38.462 0.00 0.00 36.25 3.53
2788 10519 6.887002 GGGAGTATCAGTTTTCTCTTTTGGAT 59.113 38.462 0.00 0.00 36.25 3.41
2789 10520 8.047310 GGGAGTATCAGTTTTCTCTTTTGGATA 58.953 37.037 0.00 0.00 36.25 2.59
2790 10521 8.884726 GGAGTATCAGTTTTCTCTTTTGGATAC 58.115 37.037 0.00 0.00 37.30 2.24
2791 10522 8.480643 AGTATCAGTTTTCTCTTTTGGATACG 57.519 34.615 0.00 0.00 40.25 3.06
2792 10523 8.311836 AGTATCAGTTTTCTCTTTTGGATACGA 58.688 33.333 0.00 0.00 40.25 3.43
2793 10524 7.979444 ATCAGTTTTCTCTTTTGGATACGAA 57.021 32.000 0.00 0.00 42.51 3.85
2805 10536 7.680442 TTTTGGATACGAAAGTGATGATTGA 57.320 32.000 0.00 0.00 45.12 2.57
2806 10537 8.279970 TTTTGGATACGAAAGTGATGATTGAT 57.720 30.769 0.00 0.00 45.12 2.57
2807 10538 9.389755 TTTTGGATACGAAAGTGATGATTGATA 57.610 29.630 0.00 0.00 45.12 2.15
2812 10543 6.094739 ACGAAAGTGATGATTGATACGTTG 57.905 37.500 0.00 0.00 46.97 4.10
2813 10544 4.957967 CGAAAGTGATGATTGATACGTTGC 59.042 41.667 0.00 0.00 0.00 4.17
2814 10545 5.445806 CGAAAGTGATGATTGATACGTTGCA 60.446 40.000 0.00 0.00 0.00 4.08
2815 10546 5.475273 AAGTGATGATTGATACGTTGCAG 57.525 39.130 0.00 0.00 0.00 4.41
2816 10547 4.507710 AGTGATGATTGATACGTTGCAGT 58.492 39.130 0.00 0.00 0.00 4.40
2817 10548 4.937620 AGTGATGATTGATACGTTGCAGTT 59.062 37.500 0.00 0.00 0.00 3.16
2818 10549 5.023920 GTGATGATTGATACGTTGCAGTTG 58.976 41.667 0.00 0.00 0.00 3.16
2819 10550 4.694982 TGATGATTGATACGTTGCAGTTGT 59.305 37.500 0.00 0.00 0.00 3.32
2820 10551 5.181056 TGATGATTGATACGTTGCAGTTGTT 59.819 36.000 0.00 0.00 0.00 2.83
2821 10552 6.370166 TGATGATTGATACGTTGCAGTTGTTA 59.630 34.615 0.00 0.00 0.00 2.41
2822 10553 6.164408 TGATTGATACGTTGCAGTTGTTAG 57.836 37.500 0.00 0.00 0.00 2.34
2823 10554 5.699001 TGATTGATACGTTGCAGTTGTTAGT 59.301 36.000 0.00 0.00 0.00 2.24
2824 10555 4.983215 TGATACGTTGCAGTTGTTAGTG 57.017 40.909 0.00 0.00 0.00 2.74
2825 10556 4.373527 TGATACGTTGCAGTTGTTAGTGT 58.626 39.130 0.00 0.00 0.00 3.55
2826 10557 4.812091 TGATACGTTGCAGTTGTTAGTGTT 59.188 37.500 0.00 0.00 0.00 3.32
2827 10558 5.984323 TGATACGTTGCAGTTGTTAGTGTTA 59.016 36.000 0.00 0.00 0.00 2.41
2828 10559 6.479331 TGATACGTTGCAGTTGTTAGTGTTAA 59.521 34.615 0.00 0.00 0.00 2.01
2829 10560 5.151632 ACGTTGCAGTTGTTAGTGTTAAG 57.848 39.130 0.00 0.00 0.00 1.85
2830 10561 4.034742 ACGTTGCAGTTGTTAGTGTTAAGG 59.965 41.667 0.00 0.00 0.00 2.69
2831 10562 4.034742 CGTTGCAGTTGTTAGTGTTAAGGT 59.965 41.667 0.00 0.00 0.00 3.50
2832 10563 5.234757 CGTTGCAGTTGTTAGTGTTAAGGTA 59.765 40.000 0.00 0.00 0.00 3.08
2833 10564 6.238157 CGTTGCAGTTGTTAGTGTTAAGGTAA 60.238 38.462 0.00 0.00 0.00 2.85
2834 10565 7.519328 CGTTGCAGTTGTTAGTGTTAAGGTAAT 60.519 37.037 0.00 0.00 0.00 1.89
2835 10566 7.197071 TGCAGTTGTTAGTGTTAAGGTAATG 57.803 36.000 0.00 0.00 0.00 1.90
2836 10567 6.084277 GCAGTTGTTAGTGTTAAGGTAATGC 58.916 40.000 0.00 0.00 0.00 3.56
2837 10568 6.072673 GCAGTTGTTAGTGTTAAGGTAATGCT 60.073 38.462 0.00 0.00 0.00 3.79
2838 10569 7.521585 GCAGTTGTTAGTGTTAAGGTAATGCTT 60.522 37.037 0.00 0.00 0.00 3.91
2839 10570 7.803189 CAGTTGTTAGTGTTAAGGTAATGCTTG 59.197 37.037 0.00 0.00 0.00 4.01
2840 10571 6.811253 TGTTAGTGTTAAGGTAATGCTTGG 57.189 37.500 0.00 0.00 0.00 3.61
2841 10572 6.300703 TGTTAGTGTTAAGGTAATGCTTGGT 58.699 36.000 0.00 0.00 0.00 3.67
2842 10573 6.205853 TGTTAGTGTTAAGGTAATGCTTGGTG 59.794 38.462 0.00 0.00 0.00 4.17
2843 10574 4.725490 AGTGTTAAGGTAATGCTTGGTGT 58.275 39.130 0.00 0.00 0.00 4.16
2844 10575 5.137551 AGTGTTAAGGTAATGCTTGGTGTT 58.862 37.500 0.00 0.00 0.00 3.32
2845 10576 5.596772 AGTGTTAAGGTAATGCTTGGTGTTT 59.403 36.000 0.00 0.00 0.00 2.83
2846 10577 5.918576 GTGTTAAGGTAATGCTTGGTGTTTC 59.081 40.000 0.00 0.00 0.00 2.78
2847 10578 5.594725 TGTTAAGGTAATGCTTGGTGTTTCA 59.405 36.000 0.00 0.00 0.00 2.69
2848 10579 6.266558 TGTTAAGGTAATGCTTGGTGTTTCAT 59.733 34.615 0.00 0.00 0.00 2.57
2849 10580 5.806654 AAGGTAATGCTTGGTGTTTCATT 57.193 34.783 0.00 0.00 34.08 2.57
2850 10581 5.138125 AGGTAATGCTTGGTGTTTCATTG 57.862 39.130 0.00 0.00 32.20 2.82
2851 10582 4.832266 AGGTAATGCTTGGTGTTTCATTGA 59.168 37.500 0.00 0.00 32.20 2.57
2852 10583 4.923281 GGTAATGCTTGGTGTTTCATTGAC 59.077 41.667 0.00 0.00 32.20 3.18
2853 10584 4.669206 AATGCTTGGTGTTTCATTGACA 57.331 36.364 0.00 0.00 0.00 3.58
2854 10585 4.877378 ATGCTTGGTGTTTCATTGACAT 57.123 36.364 0.00 0.00 0.00 3.06
2855 10586 4.241590 TGCTTGGTGTTTCATTGACATC 57.758 40.909 0.00 0.00 0.00 3.06
2856 10587 3.005684 TGCTTGGTGTTTCATTGACATCC 59.994 43.478 0.00 0.00 0.00 3.51
2857 10588 3.825308 CTTGGTGTTTCATTGACATCCG 58.175 45.455 0.00 0.00 0.00 4.18
2858 10589 2.857483 TGGTGTTTCATTGACATCCGT 58.143 42.857 0.00 0.00 0.00 4.69
2859 10590 2.551887 TGGTGTTTCATTGACATCCGTG 59.448 45.455 0.00 0.00 0.00 4.94
2860 10591 2.811431 GGTGTTTCATTGACATCCGTGA 59.189 45.455 0.00 0.00 0.00 4.35
2861 10592 3.440173 GGTGTTTCATTGACATCCGTGAT 59.560 43.478 0.00 0.00 0.00 3.06
2862 10593 4.634004 GGTGTTTCATTGACATCCGTGATA 59.366 41.667 0.00 0.00 0.00 2.15
2863 10594 5.296780 GGTGTTTCATTGACATCCGTGATAT 59.703 40.000 0.00 0.00 0.00 1.63
2864 10595 6.481976 GGTGTTTCATTGACATCCGTGATATA 59.518 38.462 0.00 0.00 0.00 0.86
2865 10596 7.307396 GGTGTTTCATTGACATCCGTGATATAG 60.307 40.741 0.00 0.00 0.00 1.31
2866 10597 7.224753 GTGTTTCATTGACATCCGTGATATAGT 59.775 37.037 0.00 0.00 0.00 2.12
2867 10598 8.417884 TGTTTCATTGACATCCGTGATATAGTA 58.582 33.333 0.00 0.00 0.00 1.82
2868 10599 9.424319 GTTTCATTGACATCCGTGATATAGTAT 57.576 33.333 0.00 0.00 0.00 2.12
2869 10600 8.986477 TTCATTGACATCCGTGATATAGTATG 57.014 34.615 0.00 0.00 0.00 2.39
2870 10601 8.122472 TCATTGACATCCGTGATATAGTATGT 57.878 34.615 0.00 0.00 0.00 2.29
2871 10602 8.585018 TCATTGACATCCGTGATATAGTATGTT 58.415 33.333 0.00 0.00 0.00 2.71
2872 10603 8.864024 CATTGACATCCGTGATATAGTATGTTC 58.136 37.037 0.00 0.00 0.00 3.18
2873 10604 6.608610 TGACATCCGTGATATAGTATGTTCG 58.391 40.000 0.00 0.00 0.00 3.95
2874 10605 5.950883 ACATCCGTGATATAGTATGTTCGG 58.049 41.667 13.89 13.89 38.36 4.30
2876 10607 5.874895 TCCGTGATATAGTATGTTCGGAG 57.125 43.478 16.73 1.86 40.46 4.63
2877 10608 5.554070 TCCGTGATATAGTATGTTCGGAGA 58.446 41.667 16.73 3.89 40.46 3.71
2878 10609 6.178324 TCCGTGATATAGTATGTTCGGAGAT 58.822 40.000 16.73 0.00 40.46 2.75
2879 10610 6.093633 TCCGTGATATAGTATGTTCGGAGATG 59.906 42.308 16.73 0.90 40.46 2.90
2880 10611 6.127980 CCGTGATATAGTATGTTCGGAGATGT 60.128 42.308 14.50 0.00 39.17 3.06
2881 10612 7.065443 CCGTGATATAGTATGTTCGGAGATGTA 59.935 40.741 14.50 0.00 39.17 2.29
2882 10613 8.448615 CGTGATATAGTATGTTCGGAGATGTAA 58.551 37.037 0.00 0.00 35.04 2.41
2883 10614 9.776158 GTGATATAGTATGTTCGGAGATGTAAG 57.224 37.037 0.00 0.00 35.04 2.34
2884 10615 9.734984 TGATATAGTATGTTCGGAGATGTAAGA 57.265 33.333 0.00 0.00 35.04 2.10
2887 10618 6.716934 AGTATGTTCGGAGATGTAAGATGT 57.283 37.500 0.00 0.00 35.04 3.06
2888 10619 7.113658 AGTATGTTCGGAGATGTAAGATGTT 57.886 36.000 0.00 0.00 35.04 2.71
2889 10620 6.980978 AGTATGTTCGGAGATGTAAGATGTTG 59.019 38.462 0.00 0.00 35.04 3.33
2890 10621 5.147330 TGTTCGGAGATGTAAGATGTTGT 57.853 39.130 0.00 0.00 35.04 3.32
2891 10622 5.547465 TGTTCGGAGATGTAAGATGTTGTT 58.453 37.500 0.00 0.00 35.04 2.83
2892 10623 5.408299 TGTTCGGAGATGTAAGATGTTGTTG 59.592 40.000 0.00 0.00 35.04 3.33
2893 10624 3.932710 TCGGAGATGTAAGATGTTGTTGC 59.067 43.478 0.00 0.00 0.00 4.17
2894 10625 3.935203 CGGAGATGTAAGATGTTGTTGCT 59.065 43.478 0.00 0.00 0.00 3.91
2895 10626 4.033358 CGGAGATGTAAGATGTTGTTGCTC 59.967 45.833 0.00 0.00 0.00 4.26
2896 10627 5.181748 GGAGATGTAAGATGTTGTTGCTCT 58.818 41.667 0.00 0.00 0.00 4.09
2897 10628 5.645497 GGAGATGTAAGATGTTGTTGCTCTT 59.355 40.000 0.00 0.00 33.91 2.85
2898 10629 6.150140 GGAGATGTAAGATGTTGTTGCTCTTT 59.850 38.462 0.00 0.00 31.89 2.52
2899 10630 7.138692 AGATGTAAGATGTTGTTGCTCTTTC 57.861 36.000 0.00 0.00 31.89 2.62
2900 10631 5.689383 TGTAAGATGTTGTTGCTCTTTCC 57.311 39.130 0.00 0.00 31.89 3.13
2901 10632 4.518970 TGTAAGATGTTGTTGCTCTTTCCC 59.481 41.667 0.00 0.00 31.89 3.97
2902 10633 3.515602 AGATGTTGTTGCTCTTTCCCT 57.484 42.857 0.00 0.00 0.00 4.20
2903 10634 3.152341 AGATGTTGTTGCTCTTTCCCTG 58.848 45.455 0.00 0.00 0.00 4.45
2904 10635 2.435372 TGTTGTTGCTCTTTCCCTGT 57.565 45.000 0.00 0.00 0.00 4.00
2905 10636 3.569194 TGTTGTTGCTCTTTCCCTGTA 57.431 42.857 0.00 0.00 0.00 2.74
2906 10637 3.892284 TGTTGTTGCTCTTTCCCTGTAA 58.108 40.909 0.00 0.00 0.00 2.41
2907 10638 4.274147 TGTTGTTGCTCTTTCCCTGTAAA 58.726 39.130 0.00 0.00 0.00 2.01
2908 10639 4.338118 TGTTGTTGCTCTTTCCCTGTAAAG 59.662 41.667 0.00 0.00 37.73 1.85
2909 10640 4.431416 TGTTGCTCTTTCCCTGTAAAGA 57.569 40.909 0.00 0.00 41.90 2.52
2910 10641 4.787551 TGTTGCTCTTTCCCTGTAAAGAA 58.212 39.130 0.00 0.00 43.13 2.52
2911 10642 5.197451 TGTTGCTCTTTCCCTGTAAAGAAA 58.803 37.500 0.00 0.00 43.13 2.52
2912 10643 5.654650 TGTTGCTCTTTCCCTGTAAAGAAAA 59.345 36.000 0.00 0.00 43.13 2.29
2913 10644 6.153680 TGTTGCTCTTTCCCTGTAAAGAAAAA 59.846 34.615 0.00 0.00 43.13 1.94
2914 10645 6.144078 TGCTCTTTCCCTGTAAAGAAAAAC 57.856 37.500 0.00 0.00 43.13 2.43
2915 10646 5.891551 TGCTCTTTCCCTGTAAAGAAAAACT 59.108 36.000 0.00 0.00 43.13 2.66
2916 10647 6.379988 TGCTCTTTCCCTGTAAAGAAAAACTT 59.620 34.615 0.00 0.00 43.13 2.66
2917 10648 6.918569 GCTCTTTCCCTGTAAAGAAAAACTTC 59.081 38.462 0.00 0.00 43.13 3.01
2918 10649 7.416326 GCTCTTTCCCTGTAAAGAAAAACTTCA 60.416 37.037 0.00 0.00 43.13 3.02
2919 10650 8.533569 TCTTTCCCTGTAAAGAAAAACTTCAT 57.466 30.769 0.00 0.00 41.36 2.57
2920 10651 8.977412 TCTTTCCCTGTAAAGAAAAACTTCATT 58.023 29.630 0.00 0.00 41.36 2.57
2921 10652 9.599866 CTTTCCCTGTAAAGAAAAACTTCATTT 57.400 29.630 0.00 0.00 38.50 2.32
2922 10653 9.952030 TTTCCCTGTAAAGAAAAACTTCATTTT 57.048 25.926 0.00 0.00 42.55 1.82
2923 10654 9.594478 TTCCCTGTAAAGAAAAACTTCATTTTC 57.406 29.630 4.73 4.73 45.40 2.29
2924 10655 8.754080 TCCCTGTAAAGAAAAACTTCATTTTCA 58.246 29.630 13.20 0.00 46.75 2.69
2925 10656 9.546428 CCCTGTAAAGAAAAACTTCATTTTCAT 57.454 29.630 13.20 0.93 46.75 2.57
2943 10674 5.574891 TTCATAATGAAAACGGGGTCATG 57.425 39.130 0.00 0.00 34.70 3.07
2944 10675 4.594970 TCATAATGAAAACGGGGTCATGT 58.405 39.130 0.00 0.00 34.70 3.21
2945 10676 4.397730 TCATAATGAAAACGGGGTCATGTG 59.602 41.667 0.00 0.00 34.70 3.21
2946 10677 1.544724 ATGAAAACGGGGTCATGTGG 58.455 50.000 0.00 0.00 33.21 4.17
2947 10678 1.175983 TGAAAACGGGGTCATGTGGC 61.176 55.000 0.00 0.00 0.00 5.01
2948 10679 1.873270 GAAAACGGGGTCATGTGGCC 61.873 60.000 0.00 0.00 39.63 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 4008 3.574396 TCTGACCTCAAACTGTCACCTAG 59.426 47.826 0.00 0.00 36.62 3.02
37 4037 2.668457 CACTGAAGCTCAACGTGTATCC 59.332 50.000 0.00 0.00 0.00 2.59
123 4127 2.175184 CTTGCGGCTGGAGTCAAACG 62.175 60.000 0.00 0.00 0.00 3.60
144 4153 4.283363 ACTATGGATGGCTGAGCATAAG 57.717 45.455 6.82 0.00 0.00 1.73
145 4154 4.349048 AGAACTATGGATGGCTGAGCATAA 59.651 41.667 6.82 0.00 0.00 1.90
188 4201 1.241165 TGAAGAACTGGCAGTGCATG 58.759 50.000 27.03 11.14 0.00 4.06
189 4202 1.610522 GTTGAAGAACTGGCAGTGCAT 59.389 47.619 27.03 16.25 0.00 3.96
190 4203 1.024271 GTTGAAGAACTGGCAGTGCA 58.976 50.000 27.03 16.62 0.00 4.57
200 4213 0.232303 CCGTCGTGCTGTTGAAGAAC 59.768 55.000 0.00 0.00 0.00 3.01
203 4216 2.551270 GCCGTCGTGCTGTTGAAG 59.449 61.111 0.00 0.00 0.00 3.02
233 4246 2.097142 AGCTCACGAATGGTACTACGTC 59.903 50.000 0.00 0.00 36.86 4.34
256 4269 2.461695 ACACTGGCTGATAGCTACTGT 58.538 47.619 0.00 0.00 41.99 3.55
258 4271 2.619177 CGTACACTGGCTGATAGCTACT 59.381 50.000 0.00 0.00 41.99 2.57
292 4330 9.959721 AAGGATAATAATAATTAGTGGCGATGT 57.040 29.630 0.00 0.00 31.18 3.06
340 4380 0.975556 TGCATGCCCGGTCTTCTCTA 60.976 55.000 16.68 0.00 0.00 2.43
456 4732 3.802139 ACATCGCCATTAGTATCACAACG 59.198 43.478 0.00 0.00 0.00 4.10
464 4740 3.069443 TGCAGATGACATCGCCATTAGTA 59.931 43.478 21.38 6.17 0.00 1.82
466 4742 2.479275 CTGCAGATGACATCGCCATTAG 59.521 50.000 21.38 12.75 0.00 1.73
505 4781 6.602009 TGCTTATAGTACAAGTGTAGAGCTCA 59.398 38.462 17.77 0.00 0.00 4.26
514 4797 3.308866 GGCGGTTGCTTATAGTACAAGTG 59.691 47.826 0.00 0.00 42.25 3.16
519 4802 3.264104 TGTTGGCGGTTGCTTATAGTAC 58.736 45.455 0.00 0.00 42.25 2.73
563 4846 3.004629 TGCGAGCACATTGACTGATTTTT 59.995 39.130 0.00 0.00 0.00 1.94
566 4849 1.812235 TGCGAGCACATTGACTGATT 58.188 45.000 0.00 0.00 0.00 2.57
593 4876 2.509336 CGCTTCTGGCCACGGTAG 60.509 66.667 0.00 0.00 37.74 3.18
594 4877 3.307906 ACGCTTCTGGCCACGGTA 61.308 61.111 16.74 0.00 37.74 4.02
595 4878 4.988598 CACGCTTCTGGCCACGGT 62.989 66.667 16.74 1.51 37.74 4.83
601 4884 4.742201 TCCTCGCACGCTTCTGGC 62.742 66.667 0.00 0.00 37.64 4.85
602 4885 2.811317 GTCCTCGCACGCTTCTGG 60.811 66.667 0.00 0.00 0.00 3.86
603 4886 1.803519 GAGTCCTCGCACGCTTCTG 60.804 63.158 0.00 0.00 0.00 3.02
604 4887 2.569134 GAGTCCTCGCACGCTTCT 59.431 61.111 0.00 0.00 0.00 2.85
605 4888 2.507324 GGAGTCCTCGCACGCTTC 60.507 66.667 0.41 0.00 0.00 3.86
606 4889 4.421479 CGGAGTCCTCGCACGCTT 62.421 66.667 7.77 0.00 0.00 4.68
696 4985 2.442188 GGATCGTCGTGTTCGTGGC 61.442 63.158 0.00 0.00 38.33 5.01
700 4989 1.076533 CTTGGGGATCGTCGTGTTCG 61.077 60.000 0.00 0.00 38.55 3.95
709 4998 2.438434 GTGTGGGCTTGGGGATCG 60.438 66.667 0.00 0.00 0.00 3.69
729 5018 1.398390 GTTTATTGGTGCAGAGCGGAG 59.602 52.381 0.00 0.00 0.00 4.63
730 5019 1.271108 TGTTTATTGGTGCAGAGCGGA 60.271 47.619 0.00 0.00 0.00 5.54
731 5020 1.164411 TGTTTATTGGTGCAGAGCGG 58.836 50.000 0.00 0.00 0.00 5.52
733 5022 3.366374 GGACTTGTTTATTGGTGCAGAGC 60.366 47.826 0.00 0.00 0.00 4.09
734 5023 3.191371 GGGACTTGTTTATTGGTGCAGAG 59.809 47.826 0.00 0.00 0.00 3.35
735 5024 3.153919 GGGACTTGTTTATTGGTGCAGA 58.846 45.455 0.00 0.00 0.00 4.26
736 5025 3.157087 AGGGACTTGTTTATTGGTGCAG 58.843 45.455 0.00 0.00 27.25 4.41
737 5026 3.237268 AGGGACTTGTTTATTGGTGCA 57.763 42.857 0.00 0.00 27.25 4.57
738 5027 5.466819 GTTTAGGGACTTGTTTATTGGTGC 58.533 41.667 0.00 0.00 41.75 5.01
739 5028 5.536916 TGGTTTAGGGACTTGTTTATTGGTG 59.463 40.000 0.00 0.00 41.75 4.17
741 5030 6.850752 ATGGTTTAGGGACTTGTTTATTGG 57.149 37.500 0.00 0.00 41.75 3.16
742 5031 7.320399 GGAATGGTTTAGGGACTTGTTTATTG 58.680 38.462 0.00 0.00 41.75 1.90
743 5032 6.152154 CGGAATGGTTTAGGGACTTGTTTATT 59.848 38.462 0.00 0.00 41.75 1.40
744 5033 5.650703 CGGAATGGTTTAGGGACTTGTTTAT 59.349 40.000 0.00 0.00 41.75 1.40
745 5034 5.005094 CGGAATGGTTTAGGGACTTGTTTA 58.995 41.667 0.00 0.00 41.75 2.01
746 5035 3.824443 CGGAATGGTTTAGGGACTTGTTT 59.176 43.478 0.00 0.00 41.75 2.83
747 5036 3.418047 CGGAATGGTTTAGGGACTTGTT 58.582 45.455 0.00 0.00 41.75 2.83
748 5037 2.878526 GCGGAATGGTTTAGGGACTTGT 60.879 50.000 0.00 0.00 41.75 3.16
749 5038 1.743394 GCGGAATGGTTTAGGGACTTG 59.257 52.381 0.00 0.00 41.75 3.16
750 5039 1.633945 AGCGGAATGGTTTAGGGACTT 59.366 47.619 0.00 0.00 41.75 3.01
751 5040 1.286248 AGCGGAATGGTTTAGGGACT 58.714 50.000 0.00 0.00 46.37 3.85
752 5041 2.941064 GTTAGCGGAATGGTTTAGGGAC 59.059 50.000 0.00 0.00 0.00 4.46
753 5042 2.092807 GGTTAGCGGAATGGTTTAGGGA 60.093 50.000 0.00 0.00 0.00 4.20
754 5043 2.294979 GGTTAGCGGAATGGTTTAGGG 58.705 52.381 0.00 0.00 0.00 3.53
755 5044 2.092592 AGGGTTAGCGGAATGGTTTAGG 60.093 50.000 0.00 0.00 0.00 2.69
756 5045 2.943033 CAGGGTTAGCGGAATGGTTTAG 59.057 50.000 0.00 0.00 0.00 1.85
768 5057 2.071540 GTCGTTGTAACCAGGGTTAGC 58.928 52.381 11.08 7.33 40.69 3.09
819 5108 2.844839 ACAGCGGAGGGGATAGCC 60.845 66.667 0.00 0.00 0.00 3.93
820 5109 2.134287 TGACAGCGGAGGGGATAGC 61.134 63.158 0.00 0.00 0.00 2.97
821 5110 1.742768 GTGACAGCGGAGGGGATAG 59.257 63.158 0.00 0.00 0.00 2.08
823 5112 3.461773 CGTGACAGCGGAGGGGAT 61.462 66.667 0.00 0.00 0.00 3.85
850 5148 3.462483 TGACAAGTGTAGCGGAAAAGA 57.538 42.857 0.00 0.00 0.00 2.52
855 5153 3.394674 TTCAATGACAAGTGTAGCGGA 57.605 42.857 0.00 0.00 0.00 5.54
860 5158 4.825085 GGGTTCCTTTCAATGACAAGTGTA 59.175 41.667 0.00 0.00 0.00 2.90
870 5168 1.677633 CGGGCGGGTTCCTTTCAAT 60.678 57.895 0.00 0.00 0.00 2.57
958 5256 3.306088 GCGTATTCTTATAGGCAGCCAGA 60.306 47.826 15.80 4.42 43.95 3.86
964 5262 1.337447 GCCGGCGTATTCTTATAGGCA 60.337 52.381 12.58 0.00 45.47 4.75
989 5287 1.447317 CCGCGGAATGATTTGGGAGG 61.447 60.000 24.07 0.00 0.00 4.30
1002 5302 1.964373 GCAAGGAAGAAACCGCGGA 60.964 57.895 35.90 0.00 34.73 5.54
1008 5308 0.171231 GCGATGGGCAAGGAAGAAAC 59.829 55.000 0.00 0.00 42.87 2.78
1085 5385 1.526917 CCGCCATGGATCCAACTCC 60.527 63.158 20.67 6.75 42.00 3.85
1086 5386 1.526887 TCCGCCATGGATCCAACTC 59.473 57.895 20.67 9.35 43.74 3.01
1087 5387 3.739922 TCCGCCATGGATCCAACT 58.260 55.556 20.67 0.00 43.74 3.16
1154 5454 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1158 5458 5.362143 TCAGAAGAGAGAGAGAGAGAGAGAG 59.638 48.000 0.00 0.00 0.00 3.20
1164 5464 7.067859 ACATGAAATCAGAAGAGAGAGAGAGAG 59.932 40.741 0.00 0.00 0.00 3.20
1165 5465 6.891361 ACATGAAATCAGAAGAGAGAGAGAGA 59.109 38.462 0.00 0.00 0.00 3.10
1166 5466 7.104043 ACATGAAATCAGAAGAGAGAGAGAG 57.896 40.000 0.00 0.00 0.00 3.20
1167 5467 7.479352 AACATGAAATCAGAAGAGAGAGAGA 57.521 36.000 0.00 0.00 0.00 3.10
1168 5468 7.413219 GCAAACATGAAATCAGAAGAGAGAGAG 60.413 40.741 0.00 0.00 0.00 3.20
1170 5470 6.372103 AGCAAACATGAAATCAGAAGAGAGAG 59.628 38.462 0.00 0.00 0.00 3.20
1173 5473 5.999600 TCAGCAAACATGAAATCAGAAGAGA 59.000 36.000 0.00 0.00 0.00 3.10
1174 5474 6.250344 TCAGCAAACATGAAATCAGAAGAG 57.750 37.500 0.00 0.00 0.00 2.85
1176 5476 6.853720 AGATCAGCAAACATGAAATCAGAAG 58.146 36.000 0.00 0.00 0.00 2.85
1178 5478 6.208007 ACAAGATCAGCAAACATGAAATCAGA 59.792 34.615 0.00 0.00 0.00 3.27
1179 5479 6.387465 ACAAGATCAGCAAACATGAAATCAG 58.613 36.000 0.00 0.00 0.00 2.90
1180 5480 6.335471 ACAAGATCAGCAAACATGAAATCA 57.665 33.333 0.00 0.00 0.00 2.57
1181 5481 7.647907 AAACAAGATCAGCAAACATGAAATC 57.352 32.000 0.00 0.00 0.00 2.17
1182 5482 7.519328 GCAAAACAAGATCAGCAAACATGAAAT 60.519 33.333 0.00 0.00 0.00 2.17
1207 5516 3.056313 GAATTCCACAGCCGCCAGC 62.056 63.158 0.00 0.00 44.25 4.85
1218 5531 3.221771 CTTCACCACAACCTGAATTCCA 58.778 45.455 2.27 0.00 0.00 3.53
1234 5547 2.939022 GTGCACGTCCAGCTTCAC 59.061 61.111 0.00 0.00 0.00 3.18
1302 5615 5.727630 AGGAGAAGCAGGGGACTATTATTA 58.272 41.667 0.00 0.00 40.21 0.98
1303 5616 4.571951 AGGAGAAGCAGGGGACTATTATT 58.428 43.478 0.00 0.00 40.21 1.40
1304 5617 4.220861 AGGAGAAGCAGGGGACTATTAT 57.779 45.455 0.00 0.00 40.21 1.28
1341 5660 4.142249 TGAGCTGCATGATGAAAATTCTGG 60.142 41.667 1.02 0.00 0.00 3.86
1343 5662 4.142227 GGTGAGCTGCATGATGAAAATTCT 60.142 41.667 1.02 0.00 0.00 2.40
1346 5666 2.098607 CGGTGAGCTGCATGATGAAAAT 59.901 45.455 1.02 0.00 0.00 1.82
1347 5667 1.469703 CGGTGAGCTGCATGATGAAAA 59.530 47.619 1.02 0.00 0.00 2.29
1348 5668 1.089112 CGGTGAGCTGCATGATGAAA 58.911 50.000 1.02 0.00 0.00 2.69
1359 5729 1.222115 GCGACAGTTTTCGGTGAGCT 61.222 55.000 0.00 0.00 39.50 4.09
1580 5974 1.813337 GCTTGCTCTTCTCGCCCTC 60.813 63.158 0.00 0.00 0.00 4.30
1581 5975 2.267324 GCTTGCTCTTCTCGCCCT 59.733 61.111 0.00 0.00 0.00 5.19
1582 5976 2.821810 GGCTTGCTCTTCTCGCCC 60.822 66.667 0.00 0.00 34.75 6.13
1593 5987 3.053896 GGTACACCACCGGCTTGC 61.054 66.667 0.00 0.00 37.63 4.01
1713 6594 4.395231 GGTACAAAAATGTACAGAGGAGGC 59.605 45.833 17.87 0.00 44.60 4.70
1727 6608 1.025812 CACACGGCCAGGTACAAAAA 58.974 50.000 2.24 0.00 0.00 1.94
1751 6633 2.108976 GGATCGATCGCCAGGCAA 59.891 61.111 18.81 0.00 0.00 4.52
1758 6643 3.696426 GCACGCAGGATCGATCGC 61.696 66.667 18.81 15.87 0.00 4.58
1768 6653 3.490759 GATCACCGTGGCACGCAG 61.491 66.667 33.15 25.54 40.91 5.18
1791 6676 2.009774 CCTTATGTATAGCGCATGCCC 58.990 52.381 13.15 2.30 44.31 5.36
1853 6774 8.407832 CACTGTGATTCCATTTAATATCTGCAA 58.592 33.333 0.32 0.00 0.00 4.08
1861 6782 5.653769 CCTCCACACTGTGATTCCATTTAAT 59.346 40.000 15.86 0.00 35.23 1.40
1863 8166 4.288366 TCCTCCACACTGTGATTCCATTTA 59.712 41.667 15.86 0.00 35.23 1.40
1864 8167 3.074390 TCCTCCACACTGTGATTCCATTT 59.926 43.478 15.86 0.00 35.23 2.32
1885 8188 7.545615 CCAAGTGGGCAGTTCTATTTAATTTTC 59.454 37.037 0.00 0.00 0.00 2.29
1966 8270 1.856802 TGGATCGATCTCATTGTGCG 58.143 50.000 23.96 0.00 0.00 5.34
1983 8305 2.375146 ACCTAGCCGCCTTAATTTTGG 58.625 47.619 0.00 0.00 0.00 3.28
2002 8324 0.175760 TGCACGAGAGCCCAATCTAC 59.824 55.000 0.00 0.00 0.00 2.59
2011 8333 1.363744 ATGTAAAGCTGCACGAGAGC 58.636 50.000 1.02 0.00 36.65 4.09
2051 8373 4.767255 GGAGCACAGCCGGACAGG 62.767 72.222 5.05 0.00 44.97 4.00
2082 8404 3.318839 TGGTTTTGCCATCAAGACTGAAG 59.681 43.478 0.00 0.00 43.61 3.02
2123 8459 5.724328 TGAGTAAGTGATTAGAAGCAGTGG 58.276 41.667 0.00 0.00 0.00 4.00
2124 8460 7.547019 TCAATGAGTAAGTGATTAGAAGCAGTG 59.453 37.037 0.00 0.00 0.00 3.66
2265 9973 1.028330 GCCATGCAGCTAGAGCAACA 61.028 55.000 13.28 1.66 46.27 3.33
2318 10026 0.375454 CTCTGCAGTCGTCGGTAGAG 59.625 60.000 14.67 12.07 40.41 2.43
2504 10214 0.600255 GTTGCCTGAGTGTACGTGCT 60.600 55.000 4.97 0.00 0.00 4.40
2575 10286 9.744468 ATATTATTTCAACAAAGGCGATAAACC 57.256 29.630 0.00 0.00 0.00 3.27
2599 10330 4.919774 TTTTCTAAGTGGGTGAGGCATA 57.080 40.909 0.00 0.00 0.00 3.14
2600 10331 3.806949 TTTTCTAAGTGGGTGAGGCAT 57.193 42.857 0.00 0.00 0.00 4.40
2601 10332 3.586470 TTTTTCTAAGTGGGTGAGGCA 57.414 42.857 0.00 0.00 0.00 4.75
2619 10350 8.983307 TGTCAAAGTTAAACCGTGTTATTTTT 57.017 26.923 0.00 0.00 0.00 1.94
2620 10351 8.245491 ACTGTCAAAGTTAAACCGTGTTATTTT 58.755 29.630 0.00 0.00 34.57 1.82
2621 10352 7.764331 ACTGTCAAAGTTAAACCGTGTTATTT 58.236 30.769 0.00 0.00 34.57 1.40
2622 10353 7.324354 ACTGTCAAAGTTAAACCGTGTTATT 57.676 32.000 0.00 0.00 34.57 1.40
2631 10362 6.833342 TCTTCCGTACTGTCAAAGTTAAAC 57.167 37.500 0.00 0.00 40.56 2.01
2649 10380 4.293415 CAAAACACTCACAAGCATCTTCC 58.707 43.478 0.00 0.00 0.00 3.46
2704 10435 1.954258 CCGGACGGAGGGAGTATATCC 60.954 61.905 4.40 0.00 42.14 2.59
2709 10440 0.179009 CATACCGGACGGAGGGAGTA 60.179 60.000 18.80 0.00 38.96 2.59
2710 10441 1.455217 CATACCGGACGGAGGGAGT 60.455 63.158 18.80 0.00 38.96 3.85
2711 10442 1.152819 TCATACCGGACGGAGGGAG 60.153 63.158 18.80 2.77 38.96 4.30
2712 10443 1.152819 CTCATACCGGACGGAGGGA 60.153 63.158 18.80 9.82 38.96 4.20
2713 10444 2.201022 CCTCATACCGGACGGAGGG 61.201 68.421 23.48 6.63 42.55 4.30
2714 10445 0.754217 TTCCTCATACCGGACGGAGG 60.754 60.000 24.54 24.54 46.61 4.30
2715 10446 0.384669 GTTCCTCATACCGGACGGAG 59.615 60.000 18.80 11.25 38.96 4.63
2716 10447 0.323633 TGTTCCTCATACCGGACGGA 60.324 55.000 18.80 2.90 38.96 4.69
2717 10448 0.533491 TTGTTCCTCATACCGGACGG 59.467 55.000 9.46 9.56 42.03 4.79
2718 10449 1.922570 CTTGTTCCTCATACCGGACG 58.077 55.000 9.46 0.00 0.00 4.79
2719 10450 1.207329 AGCTTGTTCCTCATACCGGAC 59.793 52.381 9.46 0.00 0.00 4.79
2720 10451 1.568504 AGCTTGTTCCTCATACCGGA 58.431 50.000 9.46 0.00 0.00 5.14
2721 10452 2.403252 AAGCTTGTTCCTCATACCGG 57.597 50.000 0.00 0.00 0.00 5.28
2722 10453 3.132289 TCCTAAGCTTGTTCCTCATACCG 59.868 47.826 9.86 0.00 0.00 4.02
2723 10454 4.081087 TGTCCTAAGCTTGTTCCTCATACC 60.081 45.833 9.86 0.00 0.00 2.73
2724 10455 5.086104 TGTCCTAAGCTTGTTCCTCATAC 57.914 43.478 9.86 0.00 0.00 2.39
2725 10456 5.396772 CCATGTCCTAAGCTTGTTCCTCATA 60.397 44.000 9.86 0.00 0.00 2.15
2726 10457 4.521146 CATGTCCTAAGCTTGTTCCTCAT 58.479 43.478 9.86 3.83 0.00 2.90
2727 10458 3.307691 CCATGTCCTAAGCTTGTTCCTCA 60.308 47.826 9.86 1.51 0.00 3.86
2728 10459 3.274288 CCATGTCCTAAGCTTGTTCCTC 58.726 50.000 9.86 0.00 0.00 3.71
2729 10460 2.644798 ACCATGTCCTAAGCTTGTTCCT 59.355 45.455 9.86 0.00 0.00 3.36
2730 10461 3.073274 ACCATGTCCTAAGCTTGTTCC 57.927 47.619 9.86 0.00 0.00 3.62
2731 10462 5.453567 AAAACCATGTCCTAAGCTTGTTC 57.546 39.130 9.86 0.00 0.00 3.18
2732 10463 5.869649 AAAAACCATGTCCTAAGCTTGTT 57.130 34.783 9.86 0.00 0.00 2.83
2751 10482 2.907696 TGATACTCCCTCCGTCCAAAAA 59.092 45.455 0.00 0.00 0.00 1.94
2752 10483 2.500098 CTGATACTCCCTCCGTCCAAAA 59.500 50.000 0.00 0.00 0.00 2.44
2753 10484 2.108168 CTGATACTCCCTCCGTCCAAA 58.892 52.381 0.00 0.00 0.00 3.28
2754 10485 1.006758 ACTGATACTCCCTCCGTCCAA 59.993 52.381 0.00 0.00 0.00 3.53
2755 10486 0.629596 ACTGATACTCCCTCCGTCCA 59.370 55.000 0.00 0.00 0.00 4.02
2756 10487 1.777941 AACTGATACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
2757 10488 3.447944 AGAAAACTGATACTCCCTCCGTC 59.552 47.826 0.00 0.00 0.00 4.79
2758 10489 3.442076 AGAAAACTGATACTCCCTCCGT 58.558 45.455 0.00 0.00 0.00 4.69
2759 10490 3.702045 AGAGAAAACTGATACTCCCTCCG 59.298 47.826 0.00 0.00 0.00 4.63
2760 10491 5.685520 AAGAGAAAACTGATACTCCCTCC 57.314 43.478 0.00 0.00 0.00 4.30
2761 10492 6.372937 CCAAAAGAGAAAACTGATACTCCCTC 59.627 42.308 0.00 0.00 0.00 4.30
2762 10493 6.044404 TCCAAAAGAGAAAACTGATACTCCCT 59.956 38.462 0.00 0.00 0.00 4.20
2763 10494 6.238648 TCCAAAAGAGAAAACTGATACTCCC 58.761 40.000 0.00 0.00 0.00 4.30
2764 10495 7.929941 ATCCAAAAGAGAAAACTGATACTCC 57.070 36.000 0.00 0.00 0.00 3.85
2765 10496 8.596380 CGTATCCAAAAGAGAAAACTGATACTC 58.404 37.037 0.00 0.00 34.10 2.59
2766 10497 8.311836 TCGTATCCAAAAGAGAAAACTGATACT 58.688 33.333 0.00 0.00 34.10 2.12
2767 10498 8.475331 TCGTATCCAAAAGAGAAAACTGATAC 57.525 34.615 0.00 0.00 33.34 2.24
2768 10499 9.496873 TTTCGTATCCAAAAGAGAAAACTGATA 57.503 29.630 0.00 0.00 0.00 2.15
2769 10500 7.979444 TTCGTATCCAAAAGAGAAAACTGAT 57.021 32.000 0.00 0.00 0.00 2.90
2770 10501 7.497909 ACTTTCGTATCCAAAAGAGAAAACTGA 59.502 33.333 2.14 0.00 36.27 3.41
2771 10502 7.587757 CACTTTCGTATCCAAAAGAGAAAACTG 59.412 37.037 2.14 0.00 36.27 3.16
2772 10503 7.497909 TCACTTTCGTATCCAAAAGAGAAAACT 59.502 33.333 2.14 0.00 36.27 2.66
2773 10504 7.636326 TCACTTTCGTATCCAAAAGAGAAAAC 58.364 34.615 2.14 0.00 36.27 2.43
2774 10505 7.795482 TCACTTTCGTATCCAAAAGAGAAAA 57.205 32.000 2.14 0.00 36.27 2.29
2775 10506 7.659799 TCATCACTTTCGTATCCAAAAGAGAAA 59.340 33.333 2.14 0.00 36.27 2.52
2776 10507 7.158697 TCATCACTTTCGTATCCAAAAGAGAA 58.841 34.615 2.14 0.00 36.27 2.87
2777 10508 6.697395 TCATCACTTTCGTATCCAAAAGAGA 58.303 36.000 2.14 0.49 36.81 3.10
2778 10509 6.968131 TCATCACTTTCGTATCCAAAAGAG 57.032 37.500 2.14 0.00 36.27 2.85
2779 10510 7.606073 TCAATCATCACTTTCGTATCCAAAAGA 59.394 33.333 2.14 0.00 36.27 2.52
2780 10511 7.751732 TCAATCATCACTTTCGTATCCAAAAG 58.248 34.615 0.00 0.00 38.24 2.27
2781 10512 7.680442 TCAATCATCACTTTCGTATCCAAAA 57.320 32.000 0.00 0.00 0.00 2.44
2782 10513 7.864108 ATCAATCATCACTTTCGTATCCAAA 57.136 32.000 0.00 0.00 0.00 3.28
2783 10514 7.169140 CGTATCAATCATCACTTTCGTATCCAA 59.831 37.037 0.00 0.00 0.00 3.53
2784 10515 6.640907 CGTATCAATCATCACTTTCGTATCCA 59.359 38.462 0.00 0.00 0.00 3.41
2785 10516 6.641314 ACGTATCAATCATCACTTTCGTATCC 59.359 38.462 0.00 0.00 0.00 2.59
2786 10517 7.624706 ACGTATCAATCATCACTTTCGTATC 57.375 36.000 0.00 0.00 0.00 2.24
2787 10518 7.516785 GCAACGTATCAATCATCACTTTCGTAT 60.517 37.037 0.00 0.00 0.00 3.06
2788 10519 6.237728 GCAACGTATCAATCATCACTTTCGTA 60.238 38.462 0.00 0.00 0.00 3.43
2789 10520 5.445939 GCAACGTATCAATCATCACTTTCGT 60.446 40.000 0.00 0.00 0.00 3.85
2790 10521 4.957967 GCAACGTATCAATCATCACTTTCG 59.042 41.667 0.00 0.00 0.00 3.46
2791 10522 5.868257 TGCAACGTATCAATCATCACTTTC 58.132 37.500 0.00 0.00 0.00 2.62
2792 10523 5.412594 ACTGCAACGTATCAATCATCACTTT 59.587 36.000 0.00 0.00 0.00 2.66
2793 10524 4.937620 ACTGCAACGTATCAATCATCACTT 59.062 37.500 0.00 0.00 0.00 3.16
2794 10525 4.507710 ACTGCAACGTATCAATCATCACT 58.492 39.130 0.00 0.00 0.00 3.41
2795 10526 4.864916 ACTGCAACGTATCAATCATCAC 57.135 40.909 0.00 0.00 0.00 3.06
2796 10527 4.694982 ACAACTGCAACGTATCAATCATCA 59.305 37.500 0.00 0.00 0.00 3.07
2797 10528 5.221891 ACAACTGCAACGTATCAATCATC 57.778 39.130 0.00 0.00 0.00 2.92
2798 10529 5.627499 AACAACTGCAACGTATCAATCAT 57.373 34.783 0.00 0.00 0.00 2.45
2799 10530 5.699001 ACTAACAACTGCAACGTATCAATCA 59.301 36.000 0.00 0.00 0.00 2.57
2800 10531 6.015504 CACTAACAACTGCAACGTATCAATC 58.984 40.000 0.00 0.00 0.00 2.67
2801 10532 5.468746 ACACTAACAACTGCAACGTATCAAT 59.531 36.000 0.00 0.00 0.00 2.57
2802 10533 4.812091 ACACTAACAACTGCAACGTATCAA 59.188 37.500 0.00 0.00 0.00 2.57
2803 10534 4.373527 ACACTAACAACTGCAACGTATCA 58.626 39.130 0.00 0.00 0.00 2.15
2804 10535 4.985044 ACACTAACAACTGCAACGTATC 57.015 40.909 0.00 0.00 0.00 2.24
2805 10536 6.073440 CCTTAACACTAACAACTGCAACGTAT 60.073 38.462 0.00 0.00 0.00 3.06
2806 10537 5.234757 CCTTAACACTAACAACTGCAACGTA 59.765 40.000 0.00 0.00 0.00 3.57
2807 10538 4.034742 CCTTAACACTAACAACTGCAACGT 59.965 41.667 0.00 0.00 0.00 3.99
2808 10539 4.034742 ACCTTAACACTAACAACTGCAACG 59.965 41.667 0.00 0.00 0.00 4.10
2809 10540 5.494632 ACCTTAACACTAACAACTGCAAC 57.505 39.130 0.00 0.00 0.00 4.17
2810 10541 7.644490 CATTACCTTAACACTAACAACTGCAA 58.356 34.615 0.00 0.00 0.00 4.08
2811 10542 6.293735 GCATTACCTTAACACTAACAACTGCA 60.294 38.462 0.00 0.00 0.00 4.41
2812 10543 6.072673 AGCATTACCTTAACACTAACAACTGC 60.073 38.462 0.00 0.00 0.00 4.40
2813 10544 7.435068 AGCATTACCTTAACACTAACAACTG 57.565 36.000 0.00 0.00 0.00 3.16
2814 10545 7.040686 CCAAGCATTACCTTAACACTAACAACT 60.041 37.037 0.00 0.00 0.00 3.16
2815 10546 7.081976 CCAAGCATTACCTTAACACTAACAAC 58.918 38.462 0.00 0.00 0.00 3.32
2816 10547 6.773685 ACCAAGCATTACCTTAACACTAACAA 59.226 34.615 0.00 0.00 0.00 2.83
2817 10548 6.205853 CACCAAGCATTACCTTAACACTAACA 59.794 38.462 0.00 0.00 0.00 2.41
2818 10549 6.206048 ACACCAAGCATTACCTTAACACTAAC 59.794 38.462 0.00 0.00 0.00 2.34
2819 10550 6.300703 ACACCAAGCATTACCTTAACACTAA 58.699 36.000 0.00 0.00 0.00 2.24
2820 10551 5.871834 ACACCAAGCATTACCTTAACACTA 58.128 37.500 0.00 0.00 0.00 2.74
2821 10552 4.725490 ACACCAAGCATTACCTTAACACT 58.275 39.130 0.00 0.00 0.00 3.55
2822 10553 5.447624 AACACCAAGCATTACCTTAACAC 57.552 39.130 0.00 0.00 0.00 3.32
2823 10554 5.594725 TGAAACACCAAGCATTACCTTAACA 59.405 36.000 0.00 0.00 0.00 2.41
2824 10555 6.079424 TGAAACACCAAGCATTACCTTAAC 57.921 37.500 0.00 0.00 0.00 2.01
2825 10556 6.909550 ATGAAACACCAAGCATTACCTTAA 57.090 33.333 0.00 0.00 0.00 1.85
2826 10557 6.491745 TCAATGAAACACCAAGCATTACCTTA 59.508 34.615 0.00 0.00 30.45 2.69
2827 10558 5.304101 TCAATGAAACACCAAGCATTACCTT 59.696 36.000 0.00 0.00 30.45 3.50
2828 10559 4.832266 TCAATGAAACACCAAGCATTACCT 59.168 37.500 0.00 0.00 30.45 3.08
2829 10560 4.923281 GTCAATGAAACACCAAGCATTACC 59.077 41.667 0.00 0.00 30.45 2.85
2830 10561 5.527951 TGTCAATGAAACACCAAGCATTAC 58.472 37.500 0.00 0.00 30.45 1.89
2831 10562 5.781210 TGTCAATGAAACACCAAGCATTA 57.219 34.783 0.00 0.00 30.45 1.90
2832 10563 4.669206 TGTCAATGAAACACCAAGCATT 57.331 36.364 0.00 0.00 0.00 3.56
2833 10564 4.322198 GGATGTCAATGAAACACCAAGCAT 60.322 41.667 0.00 0.00 0.00 3.79
2834 10565 3.005684 GGATGTCAATGAAACACCAAGCA 59.994 43.478 0.00 0.00 0.00 3.91
2835 10566 3.578688 GGATGTCAATGAAACACCAAGC 58.421 45.455 0.00 0.00 0.00 4.01
2836 10567 3.253188 ACGGATGTCAATGAAACACCAAG 59.747 43.478 0.00 0.00 0.00 3.61
2837 10568 3.004210 CACGGATGTCAATGAAACACCAA 59.996 43.478 0.00 0.00 0.00 3.67
2838 10569 2.551887 CACGGATGTCAATGAAACACCA 59.448 45.455 0.00 0.00 0.00 4.17
2839 10570 2.811431 TCACGGATGTCAATGAAACACC 59.189 45.455 0.00 0.00 0.00 4.16
2840 10571 4.685169 ATCACGGATGTCAATGAAACAC 57.315 40.909 0.00 0.00 0.00 3.32
2841 10572 7.272244 ACTATATCACGGATGTCAATGAAACA 58.728 34.615 0.00 0.00 0.00 2.83
2842 10573 7.715265 ACTATATCACGGATGTCAATGAAAC 57.285 36.000 0.00 0.00 0.00 2.78
2843 10574 9.423061 CATACTATATCACGGATGTCAATGAAA 57.577 33.333 0.00 0.00 0.00 2.69
2844 10575 8.585018 ACATACTATATCACGGATGTCAATGAA 58.415 33.333 0.00 0.00 0.00 2.57
2845 10576 8.122472 ACATACTATATCACGGATGTCAATGA 57.878 34.615 0.00 0.00 0.00 2.57
2846 10577 8.763049 AACATACTATATCACGGATGTCAATG 57.237 34.615 0.00 0.00 0.00 2.82
2847 10578 7.755373 CGAACATACTATATCACGGATGTCAAT 59.245 37.037 0.00 0.00 0.00 2.57
2848 10579 7.081976 CGAACATACTATATCACGGATGTCAA 58.918 38.462 0.00 0.00 0.00 3.18
2849 10580 6.349033 CCGAACATACTATATCACGGATGTCA 60.349 42.308 0.00 0.00 41.30 3.58
2850 10581 6.028368 CCGAACATACTATATCACGGATGTC 58.972 44.000 0.00 0.00 41.30 3.06
2851 10582 5.708697 TCCGAACATACTATATCACGGATGT 59.291 40.000 0.00 0.00 42.32 3.06
2852 10583 6.093633 TCTCCGAACATACTATATCACGGATG 59.906 42.308 0.00 0.00 45.17 3.51
2853 10584 6.178324 TCTCCGAACATACTATATCACGGAT 58.822 40.000 0.00 0.00 45.17 4.18
2854 10585 5.554070 TCTCCGAACATACTATATCACGGA 58.446 41.667 0.00 0.00 44.37 4.69
2855 10586 5.874895 TCTCCGAACATACTATATCACGG 57.125 43.478 0.00 0.00 40.36 4.94
2856 10587 6.843208 ACATCTCCGAACATACTATATCACG 58.157 40.000 0.00 0.00 0.00 4.35
2857 10588 9.776158 CTTACATCTCCGAACATACTATATCAC 57.224 37.037 0.00 0.00 0.00 3.06
2858 10589 9.734984 TCTTACATCTCCGAACATACTATATCA 57.265 33.333 0.00 0.00 0.00 2.15
2861 10592 9.516546 ACATCTTACATCTCCGAACATACTATA 57.483 33.333 0.00 0.00 0.00 1.31
2862 10593 8.410673 ACATCTTACATCTCCGAACATACTAT 57.589 34.615 0.00 0.00 0.00 2.12
2863 10594 7.818997 ACATCTTACATCTCCGAACATACTA 57.181 36.000 0.00 0.00 0.00 1.82
2864 10595 6.716934 ACATCTTACATCTCCGAACATACT 57.283 37.500 0.00 0.00 0.00 2.12
2865 10596 6.757010 ACAACATCTTACATCTCCGAACATAC 59.243 38.462 0.00 0.00 0.00 2.39
2866 10597 6.873997 ACAACATCTTACATCTCCGAACATA 58.126 36.000 0.00 0.00 0.00 2.29
2867 10598 5.734720 ACAACATCTTACATCTCCGAACAT 58.265 37.500 0.00 0.00 0.00 2.71
2868 10599 5.147330 ACAACATCTTACATCTCCGAACA 57.853 39.130 0.00 0.00 0.00 3.18
2869 10600 5.671329 GCAACAACATCTTACATCTCCGAAC 60.671 44.000 0.00 0.00 0.00 3.95
2870 10601 4.391830 GCAACAACATCTTACATCTCCGAA 59.608 41.667 0.00 0.00 0.00 4.30
2871 10602 3.932710 GCAACAACATCTTACATCTCCGA 59.067 43.478 0.00 0.00 0.00 4.55
2872 10603 3.935203 AGCAACAACATCTTACATCTCCG 59.065 43.478 0.00 0.00 0.00 4.63
2873 10604 5.181748 AGAGCAACAACATCTTACATCTCC 58.818 41.667 0.00 0.00 0.00 3.71
2874 10605 6.734104 AAGAGCAACAACATCTTACATCTC 57.266 37.500 0.00 0.00 31.63 2.75
2875 10606 6.150140 GGAAAGAGCAACAACATCTTACATCT 59.850 38.462 0.00 0.00 33.05 2.90
2876 10607 6.317857 GGAAAGAGCAACAACATCTTACATC 58.682 40.000 0.00 0.00 33.05 3.06
2877 10608 5.183904 GGGAAAGAGCAACAACATCTTACAT 59.816 40.000 0.00 0.00 33.05 2.29
2878 10609 4.518970 GGGAAAGAGCAACAACATCTTACA 59.481 41.667 0.00 0.00 33.05 2.41
2879 10610 4.762251 AGGGAAAGAGCAACAACATCTTAC 59.238 41.667 0.00 0.00 33.05 2.34
2880 10611 4.761739 CAGGGAAAGAGCAACAACATCTTA 59.238 41.667 0.00 0.00 33.05 2.10
2881 10612 3.571401 CAGGGAAAGAGCAACAACATCTT 59.429 43.478 0.00 0.00 34.81 2.40
2882 10613 3.152341 CAGGGAAAGAGCAACAACATCT 58.848 45.455 0.00 0.00 0.00 2.90
2883 10614 2.887152 ACAGGGAAAGAGCAACAACATC 59.113 45.455 0.00 0.00 0.00 3.06
2884 10615 2.949447 ACAGGGAAAGAGCAACAACAT 58.051 42.857 0.00 0.00 0.00 2.71
2885 10616 2.435372 ACAGGGAAAGAGCAACAACA 57.565 45.000 0.00 0.00 0.00 3.33
2886 10617 4.578928 TCTTTACAGGGAAAGAGCAACAAC 59.421 41.667 2.55 0.00 39.87 3.32
2887 10618 4.787551 TCTTTACAGGGAAAGAGCAACAA 58.212 39.130 2.55 0.00 39.87 2.83
2888 10619 4.431416 TCTTTACAGGGAAAGAGCAACA 57.569 40.909 2.55 0.00 39.87 3.33
2889 10620 5.767816 TTTCTTTACAGGGAAAGAGCAAC 57.232 39.130 6.77 0.00 44.22 4.17
2890 10621 6.379988 AGTTTTTCTTTACAGGGAAAGAGCAA 59.620 34.615 6.77 2.64 44.22 3.91
2891 10622 5.891551 AGTTTTTCTTTACAGGGAAAGAGCA 59.108 36.000 6.77 0.00 44.22 4.26
2892 10623 6.392625 AGTTTTTCTTTACAGGGAAAGAGC 57.607 37.500 6.77 0.97 44.22 4.09
2893 10624 7.996385 TGAAGTTTTTCTTTACAGGGAAAGAG 58.004 34.615 6.77 0.00 44.22 2.85
2894 10625 7.948034 TGAAGTTTTTCTTTACAGGGAAAGA 57.052 32.000 2.55 2.55 42.37 2.52
2895 10626 9.599866 AAATGAAGTTTTTCTTTACAGGGAAAG 57.400 29.630 0.00 0.00 36.40 2.62
2896 10627 9.952030 AAAATGAAGTTTTTCTTTACAGGGAAA 57.048 25.926 0.00 0.00 36.65 3.13
2897 10628 9.594478 GAAAATGAAGTTTTTCTTTACAGGGAA 57.406 29.630 3.13 0.00 40.04 3.97
2898 10629 8.754080 TGAAAATGAAGTTTTTCTTTACAGGGA 58.246 29.630 10.09 0.00 43.09 4.20
2899 10630 8.940768 TGAAAATGAAGTTTTTCTTTACAGGG 57.059 30.769 10.09 0.00 43.09 4.45
2920 10651 5.478679 ACATGACCCCGTTTTCATTATGAAA 59.521 36.000 15.46 15.46 43.84 2.69
2921 10652 5.013547 ACATGACCCCGTTTTCATTATGAA 58.986 37.500 3.20 3.20 34.03 2.57
2922 10653 4.397730 CACATGACCCCGTTTTCATTATGA 59.602 41.667 0.00 0.00 29.64 2.15
2923 10654 4.439974 CCACATGACCCCGTTTTCATTATG 60.440 45.833 0.00 0.00 29.64 1.90
2924 10655 3.699038 CCACATGACCCCGTTTTCATTAT 59.301 43.478 0.00 0.00 29.64 1.28
2925 10656 3.085533 CCACATGACCCCGTTTTCATTA 58.914 45.455 0.00 0.00 29.64 1.90
2926 10657 1.892474 CCACATGACCCCGTTTTCATT 59.108 47.619 0.00 0.00 29.64 2.57
2927 10658 1.544724 CCACATGACCCCGTTTTCAT 58.455 50.000 0.00 0.00 32.44 2.57
2928 10659 1.175983 GCCACATGACCCCGTTTTCA 61.176 55.000 0.00 0.00 0.00 2.69
2929 10660 1.584495 GCCACATGACCCCGTTTTC 59.416 57.895 0.00 0.00 0.00 2.29
2930 10661 1.906333 GGCCACATGACCCCGTTTT 60.906 57.895 0.00 0.00 0.00 2.43
2931 10662 2.282887 GGCCACATGACCCCGTTT 60.283 61.111 0.00 0.00 0.00 3.60
2932 10663 4.360405 GGGCCACATGACCCCGTT 62.360 66.667 4.39 0.00 40.56 4.44
2934 10665 4.127744 ATGGGCCACATGACCCCG 62.128 66.667 9.28 0.00 46.43 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.