Multiple sequence alignment - TraesCS2A01G539100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G539100 chr2A 100.000 2463 0 0 1 2463 751551937 751554399 0.000000e+00 4549.0
1 TraesCS2A01G539100 chr2A 84.127 378 28 8 2090 2463 632398138 632398487 1.090000e-88 337.0
2 TraesCS2A01G539100 chr2A 84.713 157 17 4 1174 1328 751845243 751845394 1.530000e-32 150.0
3 TraesCS2A01G539100 chr2A 85.430 151 15 4 1180 1328 751893043 751892898 1.530000e-32 150.0
4 TraesCS2A01G539100 chr2A 94.048 84 5 0 1014 1097 751609057 751609140 7.150000e-26 128.0
5 TraesCS2A01G539100 chr2B 90.572 594 48 6 149 738 759756155 759756744 0.000000e+00 780.0
6 TraesCS2A01G539100 chr2B 84.517 704 59 22 1131 1791 759757222 759757918 0.000000e+00 651.0
7 TraesCS2A01G539100 chr2B 84.029 551 48 20 1 537 759732710 759733234 6.120000e-136 494.0
8 TraesCS2A01G539100 chr2B 94.684 301 16 0 1789 2089 759757965 759758265 3.710000e-128 468.0
9 TraesCS2A01G539100 chr2B 81.197 351 45 14 1014 1348 759765492 759765837 1.880000e-66 263.0
10 TraesCS2A01G539100 chr2B 90.099 202 11 5 736 933 759756834 759757030 1.130000e-63 254.0
11 TraesCS2A01G539100 chr2B 93.284 134 9 0 958 1091 759757022 759757155 5.370000e-47 198.0
12 TraesCS2A01G539100 chr2B 84.177 158 18 4 1173 1328 760016078 760016230 1.970000e-31 147.0
13 TraesCS2A01G539100 chr2B 83.117 154 21 3 1176 1328 760118989 760119138 4.270000e-28 135.0
14 TraesCS2A01G539100 chr2B 90.000 90 8 1 61 149 759753786 759753875 5.570000e-22 115.0
15 TraesCS2A01G539100 chr2B 92.405 79 6 0 1012 1090 760263969 760264047 2.000000e-21 113.0
16 TraesCS2A01G539100 chr2D 85.349 703 54 22 1129 1794 620160241 620160931 0.000000e+00 682.0
17 TraesCS2A01G539100 chr2D 92.508 307 17 4 1786 2089 620160971 620161274 3.760000e-118 435.0
18 TraesCS2A01G539100 chr2D 88.184 347 32 9 2090 2431 16476431 16476089 2.950000e-109 405.0
19 TraesCS2A01G539100 chr2D 94.515 237 10 3 1785 2020 620187876 620188110 1.800000e-96 363.0
20 TraesCS2A01G539100 chr2D 87.829 304 16 10 30 331 620159015 620159299 1.090000e-88 337.0
21 TraesCS2A01G539100 chr2D 81.356 354 44 14 1014 1348 620193798 620194148 4.040000e-68 268.0
22 TraesCS2A01G539100 chr2D 97.015 134 4 0 958 1091 620159990 620160123 2.460000e-55 226.0
23 TraesCS2A01G539100 chr2D 86.667 150 17 1 1176 1325 620006150 620006296 1.960000e-36 163.0
24 TraesCS2A01G539100 chr2D 75.419 358 59 17 1012 1348 620447875 620448224 1.970000e-31 147.0
25 TraesCS2A01G539100 chr2D 81.095 201 17 10 736 933 620159816 620159998 9.180000e-30 141.0
26 TraesCS2A01G539100 chr2D 92.553 94 7 0 396 489 620159327 620159420 4.270000e-28 135.0
27 TraesCS2A01G539100 chr2D 92.405 79 6 0 1012 1090 620295783 620295861 2.000000e-21 113.0
28 TraesCS2A01G539100 chr4A 87.958 382 26 17 2090 2463 198136119 198136488 1.350000e-117 433.0
29 TraesCS2A01G539100 chr4A 98.182 220 4 0 2244 2463 539859275 539859056 3.840000e-103 385.0
30 TraesCS2A01G539100 chr4A 97.727 220 5 0 2244 2463 383148617 383148836 1.790000e-101 379.0
31 TraesCS2A01G539100 chr4A 91.429 140 11 1 2090 2228 255991294 255991155 8.990000e-45 191.0
32 TraesCS2A01G539100 chr4A 90.845 142 11 1 2089 2228 93927618 93927759 3.230000e-44 189.0
33 TraesCS2A01G539100 chr5A 97.273 220 2 1 2244 2463 602543081 602542866 1.080000e-98 370.0
34 TraesCS2A01G539100 chr5A 96.380 221 6 2 2244 2463 232853653 232853434 1.800000e-96 363.0
35 TraesCS2A01G539100 chr5A 91.489 141 10 1 2090 2228 663587533 663587673 2.500000e-45 193.0
36 TraesCS2A01G539100 chr6A 96.818 220 3 1 2244 2463 15816718 15816503 5.010000e-97 364.0
37 TraesCS2A01G539100 chr6A 96.818 220 3 1 2244 2463 67090615 67090400 5.010000e-97 364.0
38 TraesCS2A01G539100 chr6A 89.796 147 11 1 2086 2228 15816928 15816782 4.180000e-43 185.0
39 TraesCS2A01G539100 chr3A 96.818 220 3 1 2244 2463 596694299 596694514 5.010000e-97 364.0
40 TraesCS2A01G539100 chr3A 91.489 141 11 1 2089 2228 682485416 682485556 2.500000e-45 193.0
41 TraesCS2A01G539100 chr1B 92.523 214 11 3 364 572 577991928 577991715 3.980000e-78 302.0
42 TraesCS2A01G539100 chr1B 83.092 207 22 9 84 281 577992634 577992432 2.520000e-40 176.0
43 TraesCS2A01G539100 chr1B 92.857 42 1 1 45 86 577994303 577994264 2.650000e-05 60.2
44 TraesCS2A01G539100 chr5B 89.583 144 15 0 2085 2228 712362615 712362758 1.500000e-42 183.0
45 TraesCS2A01G539100 chr1A 89.116 147 16 0 2082 2228 588979910 588980056 1.500000e-42 183.0
46 TraesCS2A01G539100 chrUn 86.452 155 18 1 1174 1328 23172111 23171960 1.520000e-37 167.0
47 TraesCS2A01G539100 chrUn 86.842 152 17 1 1174 1325 350649645 350649793 1.520000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G539100 chr2A 751551937 751554399 2462 False 4549 4549 100.0000 1 2463 1 chr2A.!!$F2 2462
1 TraesCS2A01G539100 chr2B 759732710 759733234 524 False 494 494 84.0290 1 537 1 chr2B.!!$F1 536
2 TraesCS2A01G539100 chr2B 759753786 759758265 4479 False 411 780 90.5260 61 2089 6 chr2B.!!$F6 2028
3 TraesCS2A01G539100 chr2D 620159015 620161274 2259 False 326 682 89.3915 30 2089 6 chr2D.!!$F6 2059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
282 2589 0.029967 TTGCGCGTTGATCTTTGCAA 59.97 45.0 8.43 0.0 39.73 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 4158 0.162294 GCAACGTACACGCCTTACAC 59.838 55.0 0.85 0.0 44.43 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 30 4.699522 GGAGCACGCCGGGTCTTT 62.700 66.667 2.18 0.00 35.67 2.52
52 54 2.970639 GTGACGCTCAGCCAGGTA 59.029 61.111 0.00 0.00 0.00 3.08
53 55 1.446272 GTGACGCTCAGCCAGGTAC 60.446 63.158 0.00 0.00 0.00 3.34
82 84 2.482142 GCTATCAGTCAGCCAGTGTACC 60.482 54.545 0.00 0.00 32.68 3.34
176 2460 3.679824 ACTGTAGAAAAGAAGACCGGG 57.320 47.619 6.32 0.00 0.00 5.73
177 2461 2.289506 ACTGTAGAAAAGAAGACCGGGC 60.290 50.000 6.32 0.52 0.00 6.13
178 2462 1.695242 TGTAGAAAAGAAGACCGGGCA 59.305 47.619 11.69 0.00 0.00 5.36
179 2463 2.304761 TGTAGAAAAGAAGACCGGGCAT 59.695 45.455 11.69 0.00 0.00 4.40
212 2507 0.036765 CCCGGAGTTGAATCGTTCCA 60.037 55.000 0.73 0.00 0.00 3.53
213 2508 1.359848 CCGGAGTTGAATCGTTCCAG 58.640 55.000 0.00 0.00 0.00 3.86
214 2509 1.067142 CCGGAGTTGAATCGTTCCAGA 60.067 52.381 0.00 0.00 0.00 3.86
219 2514 1.459592 GTTGAATCGTTCCAGACACGG 59.540 52.381 0.00 0.00 38.23 4.94
223 2529 0.677288 ATCGTTCCAGACACGGTTGA 59.323 50.000 0.00 0.00 38.23 3.18
276 2583 1.354040 CTCTTCTTGCGCGTTGATCT 58.646 50.000 8.43 0.00 0.00 2.75
282 2589 0.029967 TTGCGCGTTGATCTTTGCAA 59.970 45.000 8.43 0.00 39.73 4.08
291 2598 3.173953 TGATCTTTGCAACCCCTTGAT 57.826 42.857 0.00 0.00 0.00 2.57
292 2599 3.509442 TGATCTTTGCAACCCCTTGATT 58.491 40.909 0.00 0.00 0.00 2.57
293 2600 3.903090 TGATCTTTGCAACCCCTTGATTT 59.097 39.130 0.00 0.00 0.00 2.17
334 2642 5.566627 CGCCATGAAGTTTTGGTTCCTAAAT 60.567 40.000 0.00 0.00 35.34 1.40
449 2762 3.407967 TCCCCAAGACCGGGCATC 61.408 66.667 11.69 0.00 45.90 3.91
480 2793 1.025041 CTCCAGACACGGATCGATCA 58.975 55.000 25.93 2.08 33.56 2.92
490 2803 1.588932 GATCGATCAGGCGCAACGA 60.589 57.895 20.52 12.58 37.39 3.85
537 2850 4.275936 ACCACTTTTTCTTCTCCGTTGATG 59.724 41.667 0.00 0.00 0.00 3.07
572 2894 0.393537 GCCCTCAAGGAGACACCATG 60.394 60.000 0.00 0.00 42.04 3.66
603 2967 1.171308 CTCCCAAGTGGCAAGTGATG 58.829 55.000 0.00 0.00 0.00 3.07
710 3089 2.185494 ACGATACGTCCCTCTCGGC 61.185 63.158 0.00 0.00 33.69 5.54
777 3275 3.691342 TCGCCACTCCACTTCCCG 61.691 66.667 0.00 0.00 0.00 5.14
795 3293 2.626780 GCTGAAAACAGCCCGACCC 61.627 63.158 10.58 0.00 42.05 4.46
821 3322 2.404559 TCTGCCTATAAATCCACCCGT 58.595 47.619 0.00 0.00 0.00 5.28
822 3323 2.775384 TCTGCCTATAAATCCACCCGTT 59.225 45.455 0.00 0.00 0.00 4.44
823 3324 3.139077 CTGCCTATAAATCCACCCGTTC 58.861 50.000 0.00 0.00 0.00 3.95
824 3325 2.158726 TGCCTATAAATCCACCCGTTCC 60.159 50.000 0.00 0.00 0.00 3.62
836 3337 3.382832 CGTTCCCCTGCCGAGAGT 61.383 66.667 0.00 0.00 0.00 3.24
883 3385 1.892819 CGCTCTCTTCCTCCCTTGCA 61.893 60.000 0.00 0.00 0.00 4.08
884 3386 0.392327 GCTCTCTTCCTCCCTTGCAC 60.392 60.000 0.00 0.00 0.00 4.57
885 3387 0.979665 CTCTCTTCCTCCCTTGCACA 59.020 55.000 0.00 0.00 0.00 4.57
886 3388 1.558756 CTCTCTTCCTCCCTTGCACAT 59.441 52.381 0.00 0.00 0.00 3.21
887 3389 2.768527 CTCTCTTCCTCCCTTGCACATA 59.231 50.000 0.00 0.00 0.00 2.29
888 3390 3.181329 TCTCTTCCTCCCTTGCACATAA 58.819 45.455 0.00 0.00 0.00 1.90
890 3392 2.642311 TCTTCCTCCCTTGCACATAACA 59.358 45.455 0.00 0.00 0.00 2.41
930 3432 4.489771 CCGTCCCATCCCACCAGC 62.490 72.222 0.00 0.00 0.00 4.85
931 3433 4.489771 CGTCCCATCCCACCAGCC 62.490 72.222 0.00 0.00 0.00 4.85
932 3434 3.338250 GTCCCATCCCACCAGCCA 61.338 66.667 0.00 0.00 0.00 4.75
933 3435 3.338250 TCCCATCCCACCAGCCAC 61.338 66.667 0.00 0.00 0.00 5.01
934 3436 4.447342 CCCATCCCACCAGCCACC 62.447 72.222 0.00 0.00 0.00 4.61
935 3437 4.802051 CCATCCCACCAGCCACCG 62.802 72.222 0.00 0.00 0.00 4.94
936 3438 4.802051 CATCCCACCAGCCACCGG 62.802 72.222 0.00 0.00 0.00 5.28
1091 3593 1.765230 GTCTCCACTCTCCACGGTAT 58.235 55.000 0.00 0.00 0.00 2.73
1092 3594 1.405821 GTCTCCACTCTCCACGGTATG 59.594 57.143 0.00 0.00 0.00 2.39
1094 3596 2.100197 CTCCACTCTCCACGGTATGAA 58.900 52.381 0.00 0.00 0.00 2.57
1095 3597 2.695666 CTCCACTCTCCACGGTATGAAT 59.304 50.000 0.00 0.00 0.00 2.57
1118 3686 2.496070 TCGTTGATCCGGTCTGAATTCT 59.504 45.455 7.05 0.00 0.00 2.40
1126 3694 2.271800 CGGTCTGAATTCTACACCAGC 58.728 52.381 16.49 1.90 0.00 4.85
1159 3741 1.391485 CTGAATTTCGCACCTCTGACG 59.609 52.381 0.00 0.00 0.00 4.35
1165 3747 2.512515 GCACCTCTGACGATGGCC 60.513 66.667 0.00 0.00 0.00 5.36
1170 3752 1.812922 CTCTGACGATGGCCACTGC 60.813 63.158 8.16 0.00 0.00 4.40
1291 3876 4.314440 AAGCTCTTCCGCACGGCA 62.314 61.111 3.66 0.00 34.68 5.69
1298 3883 4.794439 TCCGCACGGCACAGATCG 62.794 66.667 3.66 0.00 34.68 3.69
1330 3915 1.079057 GGCCAAGGACGAGAAGGAC 60.079 63.158 0.00 0.00 0.00 3.85
1332 3917 1.215647 CCAAGGACGAGAAGGACGG 59.784 63.158 0.00 0.00 34.93 4.79
1348 3948 2.125269 GGCGCCGCTAAGAAGGAA 60.125 61.111 12.58 0.00 0.00 3.36
1351 3951 1.814169 CGCCGCTAAGAAGGAACCC 60.814 63.158 0.00 0.00 0.00 4.11
1353 3953 0.107165 GCCGCTAAGAAGGAACCCAT 60.107 55.000 0.00 0.00 0.00 4.00
1355 3955 1.209504 CCGCTAAGAAGGAACCCATCA 59.790 52.381 0.00 0.00 0.00 3.07
1364 3964 1.275291 AGGAACCCATCACTGTGTACG 59.725 52.381 7.79 0.00 0.00 3.67
1414 4017 2.428925 CCACCCGCACCCGTACTAT 61.429 63.158 0.00 0.00 0.00 2.12
1418 4021 1.669049 CCCGCACCCGTACTATCACA 61.669 60.000 0.00 0.00 0.00 3.58
1419 4022 0.173935 CCGCACCCGTACTATCACAA 59.826 55.000 0.00 0.00 0.00 3.33
1468 4071 0.248825 GCGTCATCTGCTGATCGAGT 60.249 55.000 15.73 0.00 35.97 4.18
1484 4087 1.201921 CGAGTTGCACATTTCGTAGCC 60.202 52.381 0.00 0.00 0.00 3.93
1489 4092 2.124860 ACATTTCGTAGCCGGCCC 60.125 61.111 26.15 13.84 33.95 5.80
1506 4117 2.655364 CGCCGATCGATCAGCGTT 60.655 61.111 36.06 0.00 45.69 4.84
1510 4121 0.249073 CCGATCGATCAGCGTTCCTT 60.249 55.000 24.40 0.00 41.80 3.36
1512 4123 1.124462 GATCGATCAGCGTTCCTTCG 58.876 55.000 20.52 0.00 41.80 3.79
1521 4132 2.165301 CGTTCCTTCGCCGGTGATC 61.165 63.158 20.33 6.57 0.00 2.92
1544 4155 3.195002 CGTGCGGCATGTACCTGG 61.195 66.667 13.98 0.00 0.00 4.45
1546 4157 4.794648 TGCGGCATGTACCTGGCC 62.795 66.667 17.06 12.95 44.27 5.36
1549 4160 2.824041 GGCATGTACCTGGCCGTG 60.824 66.667 12.84 0.00 38.04 4.94
1550 4161 2.046314 GCATGTACCTGGCCGTGT 60.046 61.111 0.00 0.00 0.00 4.49
1551 4162 1.219664 GCATGTACCTGGCCGTGTA 59.780 57.895 0.00 0.00 0.00 2.90
1598 4224 2.470156 CAGCCGTGCATCTGCTTAA 58.530 52.632 3.53 0.00 42.66 1.85
1612 4238 6.682863 GCATCTGCTTAATTTGTAACGTGTAG 59.317 38.462 0.00 0.00 38.21 2.74
1614 4240 8.604035 CATCTGCTTAATTTGTAACGTGTAGAT 58.396 33.333 0.00 0.00 0.00 1.98
1615 4241 9.811995 ATCTGCTTAATTTGTAACGTGTAGATA 57.188 29.630 0.00 0.00 0.00 1.98
1616 4242 9.079833 TCTGCTTAATTTGTAACGTGTAGATAC 57.920 33.333 0.00 0.00 0.00 2.24
1698 4328 4.026744 TGTGGAGAAGGACCAGATAGAAG 58.973 47.826 0.00 0.00 38.14 2.85
1706 4336 2.355108 GGACCAGATAGAAGTGCTGCAA 60.355 50.000 2.77 0.00 0.00 4.08
1765 4397 9.573133 CCAAATTGGTGATAAGAAAGTATTGAC 57.427 33.333 3.34 0.00 31.35 3.18
1816 4498 2.094258 TCGCTCGTGCATCTTTTCATTC 59.906 45.455 10.43 0.00 39.64 2.67
1817 4499 2.434761 GCTCGTGCATCTTTTCATTCG 58.565 47.619 4.26 0.00 39.41 3.34
1945 4627 7.697291 TGTTTTTATTACTCACGTGTGTTTTCC 59.303 33.333 26.26 9.01 0.00 3.13
1952 4634 0.534203 ACGTGTGTTTTCCTCGGCAT 60.534 50.000 0.00 0.00 0.00 4.40
1955 4637 1.197721 GTGTGTTTTCCTCGGCATGAG 59.802 52.381 0.00 0.00 44.83 2.90
2040 4722 2.209838 TCGCTGCTCTAACTGCATAC 57.790 50.000 0.00 0.00 39.86 2.39
2089 4772 8.134895 TGAATCAAACATCTTTTGTGTTCTACC 58.865 33.333 13.45 0.00 38.76 3.18
2090 4773 7.581213 ATCAAACATCTTTTGTGTTCTACCA 57.419 32.000 0.00 0.00 38.76 3.25
2091 4774 6.791303 TCAAACATCTTTTGTGTTCTACCAC 58.209 36.000 0.00 0.00 38.76 4.16
2092 4775 6.601613 TCAAACATCTTTTGTGTTCTACCACT 59.398 34.615 0.00 0.00 38.76 4.00
2093 4776 7.771361 TCAAACATCTTTTGTGTTCTACCACTA 59.229 33.333 0.00 0.00 38.76 2.74
2094 4777 7.730364 AACATCTTTTGTGTTCTACCACTAG 57.270 36.000 0.00 0.00 38.99 2.57
2095 4778 6.827727 ACATCTTTTGTGTTCTACCACTAGT 58.172 36.000 0.00 0.00 37.11 2.57
2096 4779 6.706270 ACATCTTTTGTGTTCTACCACTAGTG 59.294 38.462 16.34 16.34 37.11 2.74
2097 4780 5.054477 TCTTTTGTGTTCTACCACTAGTGC 58.946 41.667 17.86 3.20 36.30 4.40
2098 4781 4.409718 TTTGTGTTCTACCACTAGTGCA 57.590 40.909 17.86 5.95 36.30 4.57
2099 4782 3.660501 TGTGTTCTACCACTAGTGCAG 57.339 47.619 17.86 15.46 36.30 4.41
2100 4783 3.227614 TGTGTTCTACCACTAGTGCAGA 58.772 45.455 17.86 17.39 36.30 4.26
2101 4784 3.639561 TGTGTTCTACCACTAGTGCAGAA 59.360 43.478 23.75 23.75 36.30 3.02
2102 4785 3.988517 GTGTTCTACCACTAGTGCAGAAC 59.011 47.826 34.52 34.52 43.61 3.01
2103 4786 3.895656 TGTTCTACCACTAGTGCAGAACT 59.104 43.478 36.88 16.71 43.65 3.01
2104 4787 4.238514 GTTCTACCACTAGTGCAGAACTG 58.761 47.826 34.22 19.47 42.04 3.16
2105 4788 2.826128 TCTACCACTAGTGCAGAACTGG 59.174 50.000 17.86 3.75 42.86 4.00
2106 4789 0.687354 ACCACTAGTGCAGAACTGGG 59.313 55.000 17.86 2.92 41.55 4.45
2107 4790 0.674895 CCACTAGTGCAGAACTGGGC 60.675 60.000 17.86 0.00 41.55 5.36
2108 4791 0.322975 CACTAGTGCAGAACTGGGCT 59.677 55.000 10.54 0.00 41.55 5.19
2109 4792 1.550524 CACTAGTGCAGAACTGGGCTA 59.449 52.381 10.54 0.00 41.55 3.93
2110 4793 2.169352 CACTAGTGCAGAACTGGGCTAT 59.831 50.000 10.54 0.00 41.55 2.97
2111 4794 3.384789 CACTAGTGCAGAACTGGGCTATA 59.615 47.826 10.54 0.00 41.55 1.31
2112 4795 3.639094 ACTAGTGCAGAACTGGGCTATAG 59.361 47.826 0.00 0.00 41.55 1.31
2113 4796 1.139853 AGTGCAGAACTGGGCTATAGC 59.860 52.381 16.78 16.78 37.88 2.97
2114 4797 1.134401 GTGCAGAACTGGGCTATAGCA 60.134 52.381 25.53 5.83 44.36 3.49
2115 4798 1.134401 TGCAGAACTGGGCTATAGCAC 60.134 52.381 25.53 23.18 46.69 4.40
2116 4799 1.811941 GCAGAACTGGGCTATAGCACC 60.812 57.143 24.06 21.55 45.73 5.01
2117 4800 0.753262 AGAACTGGGCTATAGCACCG 59.247 55.000 24.06 19.93 45.73 4.94
2118 4801 0.249911 GAACTGGGCTATAGCACCGG 60.250 60.000 26.88 26.88 45.73 5.28
2119 4802 0.981277 AACTGGGCTATAGCACCGGT 60.981 55.000 27.83 27.83 45.73 5.28
2120 4803 0.981277 ACTGGGCTATAGCACCGGTT 60.981 55.000 27.83 17.99 45.73 4.44
2121 4804 0.249911 CTGGGCTATAGCACCGGTTC 60.250 60.000 24.06 0.00 45.73 3.62
2122 4805 1.300697 GGGCTATAGCACCGGTTCG 60.301 63.158 25.53 0.00 44.36 3.95
2123 4806 1.440476 GGCTATAGCACCGGTTCGT 59.560 57.895 25.53 0.00 44.36 3.85
2124 4807 0.670162 GGCTATAGCACCGGTTCGTA 59.330 55.000 25.53 0.00 44.36 3.43
2125 4808 1.067516 GGCTATAGCACCGGTTCGTAA 59.932 52.381 25.53 0.00 44.36 3.18
2126 4809 2.391879 GCTATAGCACCGGTTCGTAAG 58.608 52.381 20.01 0.90 41.59 2.34
2127 4810 2.861360 GCTATAGCACCGGTTCGTAAGG 60.861 54.545 20.01 0.00 41.59 2.69
2128 4811 0.179092 ATAGCACCGGTTCGTAAGGC 60.179 55.000 2.97 2.83 38.47 4.35
2129 4812 2.229690 TAGCACCGGTTCGTAAGGCC 62.230 60.000 2.97 0.00 38.47 5.19
2130 4813 2.435410 CACCGGTTCGTAAGGCCC 60.435 66.667 2.97 0.00 38.47 5.80
2131 4814 2.605601 ACCGGTTCGTAAGGCCCT 60.606 61.111 0.00 0.00 38.47 5.19
2132 4815 2.219164 ACCGGTTCGTAAGGCCCTT 61.219 57.895 0.00 0.00 38.47 3.95
2133 4816 1.002990 CCGGTTCGTAAGGCCCTTT 60.003 57.895 0.00 0.00 38.47 3.11
2134 4817 0.249955 CCGGTTCGTAAGGCCCTTTA 59.750 55.000 0.00 0.00 38.47 1.85
2135 4818 1.648504 CGGTTCGTAAGGCCCTTTAG 58.351 55.000 0.00 0.00 38.47 1.85
2136 4819 1.066645 CGGTTCGTAAGGCCCTTTAGT 60.067 52.381 0.00 0.00 38.47 2.24
2137 4820 2.353323 GGTTCGTAAGGCCCTTTAGTG 58.647 52.381 0.00 0.00 38.47 2.74
2138 4821 1.736126 GTTCGTAAGGCCCTTTAGTGC 59.264 52.381 0.00 0.00 38.47 4.40
2143 4826 2.035155 GGCCCTTTAGTGCCGGTT 59.965 61.111 1.90 0.00 38.00 4.44
2144 4827 2.044555 GGCCCTTTAGTGCCGGTTC 61.045 63.158 1.90 0.00 38.00 3.62
2145 4828 2.396157 GCCCTTTAGTGCCGGTTCG 61.396 63.158 1.90 0.00 0.00 3.95
2146 4829 1.004200 CCCTTTAGTGCCGGTTCGT 60.004 57.895 1.90 0.00 0.00 3.85
2147 4830 0.604511 CCCTTTAGTGCCGGTTCGTT 60.605 55.000 1.90 0.00 0.00 3.85
2148 4831 1.338011 CCCTTTAGTGCCGGTTCGTTA 60.338 52.381 1.90 0.00 0.00 3.18
2149 4832 2.415776 CCTTTAGTGCCGGTTCGTTAA 58.584 47.619 1.90 0.00 0.00 2.01
2150 4833 2.158254 CCTTTAGTGCCGGTTCGTTAAC 59.842 50.000 1.90 0.00 34.66 2.01
2157 4840 4.366603 GGTTCGTTAACCGGCACT 57.633 55.556 0.00 0.00 45.61 4.40
2158 4841 3.512978 GGTTCGTTAACCGGCACTA 57.487 52.632 0.00 0.00 45.61 2.74
2159 4842 1.794512 GGTTCGTTAACCGGCACTAA 58.205 50.000 0.00 0.00 45.61 2.24
2160 4843 2.142319 GGTTCGTTAACCGGCACTAAA 58.858 47.619 0.00 0.00 45.61 1.85
2161 4844 2.158254 GGTTCGTTAACCGGCACTAAAG 59.842 50.000 0.00 0.00 45.61 1.85
2162 4845 2.802247 GTTCGTTAACCGGCACTAAAGT 59.198 45.455 0.00 0.00 37.11 2.66
2163 4846 2.406130 TCGTTAACCGGCACTAAAGTG 58.594 47.619 0.00 5.73 41.30 3.16
2164 4847 2.224018 TCGTTAACCGGCACTAAAGTGT 60.224 45.455 0.00 0.00 40.82 3.55
2165 4848 4.346145 TCGTTAACCGGCACTAAAGTGTG 61.346 47.826 0.00 5.04 40.82 3.82
2169 4852 2.379650 ACCGGCACTAAAGTGTGGGTA 61.380 52.381 19.18 0.00 45.20 3.69
2170 4853 4.504884 ACCGGCACTAAAGTGTGGGTAC 62.505 54.545 19.18 1.45 45.20 3.34
2177 4860 5.861727 CACTAAAGTGTGGGTACTAAAGGT 58.138 41.667 1.81 0.00 40.96 3.50
2178 4861 5.930569 CACTAAAGTGTGGGTACTAAAGGTC 59.069 44.000 1.81 0.00 40.96 3.85
2179 4862 4.362470 AAAGTGTGGGTACTAAAGGTCC 57.638 45.455 0.00 0.00 0.00 4.46
2180 4863 2.263545 AGTGTGGGTACTAAAGGTCCC 58.736 52.381 0.00 0.00 36.48 4.46
2181 4864 1.280133 GTGTGGGTACTAAAGGTCCCC 59.720 57.143 8.55 0.00 43.59 4.81
2182 4865 1.152701 TGTGGGTACTAAAGGTCCCCT 59.847 52.381 8.55 0.00 43.66 4.79
2194 4877 3.286871 AGGTCCCCTTTTAGTACAGGT 57.713 47.619 0.00 0.00 0.00 4.00
2195 4878 3.605879 AGGTCCCCTTTTAGTACAGGTT 58.394 45.455 0.00 0.00 0.00 3.50
2196 4879 4.766768 AGGTCCCCTTTTAGTACAGGTTA 58.233 43.478 0.00 0.00 0.00 2.85
2197 4880 4.533707 AGGTCCCCTTTTAGTACAGGTTAC 59.466 45.833 0.00 0.00 0.00 2.50
2198 4881 4.498241 GTCCCCTTTTAGTACAGGTTACG 58.502 47.826 0.00 0.00 0.00 3.18
2199 4882 3.055891 TCCCCTTTTAGTACAGGTTACGC 60.056 47.826 0.00 0.00 0.00 4.42
2200 4883 3.306919 CCCCTTTTAGTACAGGTTACGCA 60.307 47.826 0.00 0.00 0.00 5.24
2201 4884 3.681417 CCCTTTTAGTACAGGTTACGCAC 59.319 47.826 0.00 0.00 0.00 5.34
2202 4885 3.365820 CCTTTTAGTACAGGTTACGCACG 59.634 47.826 0.00 0.00 0.00 5.34
2203 4886 3.913548 TTTAGTACAGGTTACGCACGA 57.086 42.857 0.00 0.00 0.00 4.35
2204 4887 3.913548 TTAGTACAGGTTACGCACGAA 57.086 42.857 0.00 0.00 0.00 3.85
2205 4888 2.056094 AGTACAGGTTACGCACGAAC 57.944 50.000 0.00 0.00 0.00 3.95
2206 4889 1.063031 GTACAGGTTACGCACGAACC 58.937 55.000 13.17 13.17 45.76 3.62
2209 4892 3.149993 GGTTACGCACGAACCGTC 58.850 61.111 0.00 0.00 38.32 4.79
2222 4905 4.160826 CGAACCGTCGCTAAAGATAAAC 57.839 45.455 0.00 0.00 41.08 2.01
2223 4906 3.000376 CGAACCGTCGCTAAAGATAAACC 60.000 47.826 0.00 0.00 41.08 3.27
2224 4907 3.598019 ACCGTCGCTAAAGATAAACCA 57.402 42.857 0.00 0.00 0.00 3.67
2225 4908 3.256558 ACCGTCGCTAAAGATAAACCAC 58.743 45.455 0.00 0.00 0.00 4.16
2226 4909 2.280708 CCGTCGCTAAAGATAAACCACG 59.719 50.000 0.00 0.00 0.00 4.94
2227 4910 2.919229 CGTCGCTAAAGATAAACCACGT 59.081 45.455 0.00 0.00 0.00 4.49
2228 4911 3.365820 CGTCGCTAAAGATAAACCACGTT 59.634 43.478 0.00 0.00 0.00 3.99
2229 4912 4.489841 CGTCGCTAAAGATAAACCACGTTC 60.490 45.833 0.00 0.00 0.00 3.95
2230 4913 3.609373 TCGCTAAAGATAAACCACGTTCG 59.391 43.478 0.00 0.00 0.00 3.95
2231 4914 3.241868 CGCTAAAGATAAACCACGTTCGG 60.242 47.826 0.00 0.00 0.00 4.30
2232 4915 3.928375 GCTAAAGATAAACCACGTTCGGA 59.072 43.478 0.00 0.00 0.00 4.55
2233 4916 4.032558 GCTAAAGATAAACCACGTTCGGAG 59.967 45.833 0.00 0.00 0.00 4.63
2234 4917 2.667473 AGATAAACCACGTTCGGAGG 57.333 50.000 0.00 0.00 0.00 4.30
2235 4918 1.004595 GATAAACCACGTTCGGAGGC 58.995 55.000 0.00 0.00 0.00 4.70
2236 4919 0.738412 ATAAACCACGTTCGGAGGCG 60.738 55.000 0.00 3.18 0.00 5.52
2240 4923 4.764336 CACGTTCGGAGGCGCGTA 62.764 66.667 8.43 0.00 35.71 4.42
2241 4924 4.471726 ACGTTCGGAGGCGCGTAG 62.472 66.667 8.43 0.00 35.71 3.51
2243 4926 3.818787 GTTCGGAGGCGCGTAGGA 61.819 66.667 8.43 0.00 0.00 2.94
2244 4927 3.063704 TTCGGAGGCGCGTAGGAA 61.064 61.111 8.43 6.90 0.00 3.36
2245 4928 2.638354 TTCGGAGGCGCGTAGGAAA 61.638 57.895 8.43 0.00 0.00 3.13
2246 4929 1.952102 TTCGGAGGCGCGTAGGAAAT 61.952 55.000 8.43 0.00 0.00 2.17
2247 4930 2.237751 CGGAGGCGCGTAGGAAATG 61.238 63.158 8.43 0.00 0.00 2.32
2248 4931 1.153429 GGAGGCGCGTAGGAAATGT 60.153 57.895 8.43 0.00 0.00 2.71
2249 4932 0.743345 GGAGGCGCGTAGGAAATGTT 60.743 55.000 8.43 0.00 0.00 2.71
2250 4933 1.084289 GAGGCGCGTAGGAAATGTTT 58.916 50.000 8.43 0.00 0.00 2.83
2251 4934 0.802494 AGGCGCGTAGGAAATGTTTG 59.198 50.000 8.43 0.00 0.00 2.93
2252 4935 0.179174 GGCGCGTAGGAAATGTTTGG 60.179 55.000 8.43 0.00 0.00 3.28
2253 4936 0.179174 GCGCGTAGGAAATGTTTGGG 60.179 55.000 8.43 0.00 0.00 4.12
2254 4937 1.161843 CGCGTAGGAAATGTTTGGGT 58.838 50.000 0.00 0.00 0.00 4.51
2255 4938 1.135803 CGCGTAGGAAATGTTTGGGTG 60.136 52.381 0.00 0.00 0.00 4.61
2256 4939 1.883926 GCGTAGGAAATGTTTGGGTGT 59.116 47.619 0.00 0.00 0.00 4.16
2257 4940 2.351350 GCGTAGGAAATGTTTGGGTGTG 60.351 50.000 0.00 0.00 0.00 3.82
2258 4941 2.882137 CGTAGGAAATGTTTGGGTGTGT 59.118 45.455 0.00 0.00 0.00 3.72
2259 4942 3.316868 CGTAGGAAATGTTTGGGTGTGTT 59.683 43.478 0.00 0.00 0.00 3.32
2260 4943 4.202070 CGTAGGAAATGTTTGGGTGTGTTT 60.202 41.667 0.00 0.00 0.00 2.83
2261 4944 4.835284 AGGAAATGTTTGGGTGTGTTTT 57.165 36.364 0.00 0.00 0.00 2.43
2262 4945 4.512484 AGGAAATGTTTGGGTGTGTTTTG 58.488 39.130 0.00 0.00 0.00 2.44
2263 4946 3.625313 GGAAATGTTTGGGTGTGTTTTGG 59.375 43.478 0.00 0.00 0.00 3.28
2264 4947 3.990959 AATGTTTGGGTGTGTTTTGGT 57.009 38.095 0.00 0.00 0.00 3.67
2265 4948 3.990959 ATGTTTGGGTGTGTTTTGGTT 57.009 38.095 0.00 0.00 0.00 3.67
2266 4949 3.771577 TGTTTGGGTGTGTTTTGGTTT 57.228 38.095 0.00 0.00 0.00 3.27
2267 4950 4.086706 TGTTTGGGTGTGTTTTGGTTTT 57.913 36.364 0.00 0.00 0.00 2.43
2268 4951 3.815401 TGTTTGGGTGTGTTTTGGTTTTG 59.185 39.130 0.00 0.00 0.00 2.44
2269 4952 3.771577 TTGGGTGTGTTTTGGTTTTGT 57.228 38.095 0.00 0.00 0.00 2.83
2270 4953 3.771577 TGGGTGTGTTTTGGTTTTGTT 57.228 38.095 0.00 0.00 0.00 2.83
2271 4954 4.086706 TGGGTGTGTTTTGGTTTTGTTT 57.913 36.364 0.00 0.00 0.00 2.83
2272 4955 4.461198 TGGGTGTGTTTTGGTTTTGTTTT 58.539 34.783 0.00 0.00 0.00 2.43
2273 4956 4.887655 TGGGTGTGTTTTGGTTTTGTTTTT 59.112 33.333 0.00 0.00 0.00 1.94
2357 5040 9.349713 TGAGTTGTTAAATCATTAGGTGAAAGT 57.650 29.630 0.00 0.00 40.97 2.66
2360 5043 9.836076 GTTGTTAAATCATTAGGTGAAAGTACC 57.164 33.333 0.00 0.00 40.97 3.34
2361 5044 8.259049 TGTTAAATCATTAGGTGAAAGTACCG 57.741 34.615 0.00 0.00 45.56 4.02
2362 5045 5.813080 AAATCATTAGGTGAAAGTACCGC 57.187 39.130 0.00 0.00 45.56 5.68
2363 5046 3.965379 TCATTAGGTGAAAGTACCGCA 57.035 42.857 0.00 0.00 45.56 5.69
2364 5047 3.857052 TCATTAGGTGAAAGTACCGCAG 58.143 45.455 0.00 0.00 45.56 5.18
2365 5048 3.512329 TCATTAGGTGAAAGTACCGCAGA 59.488 43.478 0.00 0.00 45.56 4.26
2366 5049 4.161565 TCATTAGGTGAAAGTACCGCAGAT 59.838 41.667 0.00 0.00 45.56 2.90
2367 5050 4.546829 TTAGGTGAAAGTACCGCAGATT 57.453 40.909 0.00 0.00 45.56 2.40
2368 5051 5.664294 TTAGGTGAAAGTACCGCAGATTA 57.336 39.130 0.00 0.00 45.56 1.75
2369 5052 4.124851 AGGTGAAAGTACCGCAGATTAG 57.875 45.455 0.00 0.00 45.56 1.73
2370 5053 3.514309 AGGTGAAAGTACCGCAGATTAGT 59.486 43.478 0.00 0.00 45.56 2.24
2371 5054 4.020485 AGGTGAAAGTACCGCAGATTAGTT 60.020 41.667 0.00 0.00 45.56 2.24
2372 5055 4.694037 GGTGAAAGTACCGCAGATTAGTTT 59.306 41.667 0.00 0.00 0.00 2.66
2373 5056 5.390567 GGTGAAAGTACCGCAGATTAGTTTG 60.391 44.000 0.00 0.00 0.00 2.93
2374 5057 5.407387 GTGAAAGTACCGCAGATTAGTTTGA 59.593 40.000 0.00 0.00 0.00 2.69
2375 5058 5.407387 TGAAAGTACCGCAGATTAGTTTGAC 59.593 40.000 0.00 0.00 0.00 3.18
2376 5059 4.803098 AGTACCGCAGATTAGTTTGACT 57.197 40.909 0.00 0.00 0.00 3.41
2377 5060 4.495422 AGTACCGCAGATTAGTTTGACTG 58.505 43.478 0.00 0.00 0.00 3.51
2378 5061 2.699954 ACCGCAGATTAGTTTGACTGG 58.300 47.619 0.00 0.00 0.00 4.00
2379 5062 2.301870 ACCGCAGATTAGTTTGACTGGA 59.698 45.455 0.00 0.00 0.00 3.86
2380 5063 3.055094 ACCGCAGATTAGTTTGACTGGAT 60.055 43.478 0.00 0.00 0.00 3.41
2381 5064 3.310774 CCGCAGATTAGTTTGACTGGATG 59.689 47.826 0.00 0.00 0.00 3.51
2382 5065 3.242543 CGCAGATTAGTTTGACTGGATGC 60.243 47.826 0.00 0.00 0.00 3.91
2383 5066 3.691118 GCAGATTAGTTTGACTGGATGCA 59.309 43.478 0.00 0.00 30.45 3.96
2384 5067 4.337555 GCAGATTAGTTTGACTGGATGCAT 59.662 41.667 0.00 0.00 30.45 3.96
2385 5068 5.732528 GCAGATTAGTTTGACTGGATGCATG 60.733 44.000 2.46 0.00 30.45 4.06
2386 5069 5.356190 CAGATTAGTTTGACTGGATGCATGT 59.644 40.000 2.46 0.00 0.00 3.21
2387 5070 5.356190 AGATTAGTTTGACTGGATGCATGTG 59.644 40.000 2.46 0.00 0.00 3.21
2388 5071 2.165167 AGTTTGACTGGATGCATGTGG 58.835 47.619 2.46 0.00 0.00 4.17
2389 5072 2.161855 GTTTGACTGGATGCATGTGGA 58.838 47.619 2.46 0.00 0.00 4.02
2390 5073 2.756760 GTTTGACTGGATGCATGTGGAT 59.243 45.455 2.46 0.00 0.00 3.41
2391 5074 2.336945 TGACTGGATGCATGTGGATC 57.663 50.000 2.46 6.01 41.43 3.36
2397 5080 2.855209 GATGCATGTGGATCCTAGCT 57.145 50.000 14.23 0.00 36.97 3.32
2398 5081 3.969287 GATGCATGTGGATCCTAGCTA 57.031 47.619 14.23 0.00 36.97 3.32
2399 5082 4.277515 GATGCATGTGGATCCTAGCTAA 57.722 45.455 14.23 0.00 36.97 3.09
2400 5083 3.758755 TGCATGTGGATCCTAGCTAAG 57.241 47.619 14.23 0.00 0.00 2.18
2401 5084 3.041211 TGCATGTGGATCCTAGCTAAGT 58.959 45.455 14.23 0.00 0.00 2.24
2402 5085 3.070159 TGCATGTGGATCCTAGCTAAGTC 59.930 47.826 14.23 0.00 0.00 3.01
2403 5086 3.070159 GCATGTGGATCCTAGCTAAGTCA 59.930 47.826 14.23 0.00 0.00 3.41
2404 5087 4.262808 GCATGTGGATCCTAGCTAAGTCAT 60.263 45.833 14.23 1.62 0.00 3.06
2405 5088 5.477510 CATGTGGATCCTAGCTAAGTCATC 58.522 45.833 14.23 0.00 0.00 2.92
2406 5089 4.546674 TGTGGATCCTAGCTAAGTCATCA 58.453 43.478 14.23 0.00 0.00 3.07
2407 5090 4.962362 TGTGGATCCTAGCTAAGTCATCAA 59.038 41.667 14.23 0.00 0.00 2.57
2408 5091 5.069648 TGTGGATCCTAGCTAAGTCATCAAG 59.930 44.000 14.23 0.00 0.00 3.02
2409 5092 5.069781 GTGGATCCTAGCTAAGTCATCAAGT 59.930 44.000 14.23 0.00 0.00 3.16
2410 5093 6.265649 GTGGATCCTAGCTAAGTCATCAAGTA 59.734 42.308 14.23 0.00 0.00 2.24
2411 5094 7.013220 TGGATCCTAGCTAAGTCATCAAGTAT 58.987 38.462 14.23 0.00 0.00 2.12
2412 5095 8.170730 TGGATCCTAGCTAAGTCATCAAGTATA 58.829 37.037 14.23 0.00 0.00 1.47
2413 5096 9.196139 GGATCCTAGCTAAGTCATCAAGTATAT 57.804 37.037 3.84 0.00 0.00 0.86
2426 5109 9.265901 GTCATCAAGTATATATATGCCATGTCC 57.734 37.037 5.44 0.87 0.00 4.02
2427 5110 8.991275 TCATCAAGTATATATATGCCATGTCCA 58.009 33.333 5.44 0.00 0.00 4.02
2428 5111 9.788889 CATCAAGTATATATATGCCATGTCCAT 57.211 33.333 5.44 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.359850 GGCGTGCTCCATTGACCA 60.360 61.111 0.00 0.00 0.00 4.02
4 5 3.499737 CGGCGTGCTCCATTGACC 61.500 66.667 0.00 0.00 0.00 4.02
14 16 2.357760 TACAAAGACCCGGCGTGC 60.358 61.111 6.01 0.00 0.00 5.34
28 30 1.209383 GCTGAGCGTCACGAGTACA 59.791 57.895 0.00 0.00 0.00 2.90
52 54 2.428890 GCTGACTGATAGCTACTGGTGT 59.571 50.000 0.00 0.00 38.14 4.16
53 55 2.223923 GGCTGACTGATAGCTACTGGTG 60.224 54.545 0.00 0.00 40.92 4.17
82 84 3.239861 GGACAAAGCTGGAGTCCTG 57.760 57.895 19.72 11.47 46.45 3.86
177 2461 1.731700 GGGCACTACTGCATGCATG 59.268 57.895 22.97 22.70 46.28 4.06
178 2462 1.820906 CGGGCACTACTGCATGCAT 60.821 57.895 22.97 13.83 46.28 3.96
179 2463 2.436469 CGGGCACTACTGCATGCA 60.436 61.111 21.29 21.29 46.28 3.96
186 2481 1.207329 GATTCAACTCCGGGCACTACT 59.793 52.381 0.00 0.00 0.00 2.57
189 2484 1.079127 CGATTCAACTCCGGGCACT 60.079 57.895 0.00 0.00 0.00 4.40
191 2486 0.672401 GAACGATTCAACTCCGGGCA 60.672 55.000 0.00 0.00 0.00 5.36
197 2492 2.408704 CGTGTCTGGAACGATTCAACTC 59.591 50.000 0.00 0.00 43.68 3.01
212 2507 0.396435 TCCTTGCATCAACCGTGTCT 59.604 50.000 0.00 0.00 0.00 3.41
213 2508 1.131126 CATCCTTGCATCAACCGTGTC 59.869 52.381 0.00 0.00 0.00 3.67
214 2509 1.167851 CATCCTTGCATCAACCGTGT 58.832 50.000 0.00 0.00 0.00 4.49
276 2583 4.195416 GTCAAAAATCAAGGGGTTGCAAA 58.805 39.130 0.00 0.00 0.00 3.68
282 2589 2.972021 CAAGGGTCAAAAATCAAGGGGT 59.028 45.455 0.00 0.00 0.00 4.95
291 2598 2.294074 CGTGTCCTCAAGGGTCAAAAA 58.706 47.619 0.00 0.00 35.11 1.94
292 2599 1.961793 CGTGTCCTCAAGGGTCAAAA 58.038 50.000 0.00 0.00 35.11 2.44
293 2600 0.534203 GCGTGTCCTCAAGGGTCAAA 60.534 55.000 0.00 0.00 35.11 2.69
356 2664 1.067495 CCGGTCTTCTCTTCACAGGAC 60.067 57.143 0.00 0.00 0.00 3.85
357 2666 1.257743 CCGGTCTTCTCTTCACAGGA 58.742 55.000 0.00 0.00 0.00 3.86
359 2668 0.390472 GCCCGGTCTTCTCTTCACAG 60.390 60.000 0.00 0.00 0.00 3.66
389 2702 1.003116 GTTCAACTCTGCACAGTGCTG 60.003 52.381 25.83 24.34 45.31 4.41
390 2703 1.303309 GTTCAACTCTGCACAGTGCT 58.697 50.000 25.83 2.89 45.31 4.40
391 2704 0.308993 GGTTCAACTCTGCACAGTGC 59.691 55.000 19.37 19.37 45.29 4.40
392 2705 0.583438 CGGTTCAACTCTGCACAGTG 59.417 55.000 0.00 0.00 0.00 3.66
449 2762 1.606601 TCTGGAGTCTGGACACGGG 60.607 63.158 3.51 0.00 0.00 5.28
537 2850 2.442830 GCCAAGGCAAGGGGATCC 60.443 66.667 1.92 1.92 41.49 3.36
572 2894 2.031870 ACTTGGGAGGAACAAAACTGC 58.968 47.619 0.00 0.00 0.00 4.40
603 2967 1.733912 TGATTGCGAGCACATTGACTC 59.266 47.619 0.00 0.00 0.00 3.36
795 3293 5.059833 GGTGGATTTATAGGCAGAAGTCTG 58.940 45.833 3.84 3.84 46.40 3.51
821 3322 2.119611 TGACTCTCGGCAGGGGAA 59.880 61.111 0.00 0.00 0.00 3.97
822 3323 2.680352 GTGACTCTCGGCAGGGGA 60.680 66.667 0.00 0.00 0.00 4.81
823 3324 2.681778 AGTGACTCTCGGCAGGGG 60.682 66.667 0.00 0.00 0.00 4.79
824 3325 2.716017 GGAGTGACTCTCGGCAGGG 61.716 68.421 12.92 0.00 43.60 4.45
831 3332 1.470051 GAGACAGGGGAGTGACTCTC 58.530 60.000 12.92 8.48 42.07 3.20
836 3337 1.079256 CTGGGAGACAGGGGAGTGA 59.921 63.158 0.00 0.00 43.70 3.41
883 3385 1.076332 GGCGCTTCGTCTTGTTATGT 58.924 50.000 7.64 0.00 0.00 2.29
884 3386 0.025001 CGGCGCTTCGTCTTGTTATG 59.975 55.000 7.64 0.00 0.00 1.90
885 3387 1.693083 GCGGCGCTTCGTCTTGTTAT 61.693 55.000 26.86 0.00 0.00 1.89
886 3388 2.377310 GCGGCGCTTCGTCTTGTTA 61.377 57.895 26.86 0.00 0.00 2.41
887 3389 3.712881 GCGGCGCTTCGTCTTGTT 61.713 61.111 26.86 0.00 0.00 2.83
888 3390 4.961511 TGCGGCGCTTCGTCTTGT 62.962 61.111 33.26 0.00 0.00 3.16
911 3413 2.687200 TGGTGGGATGGGACGGAG 60.687 66.667 0.00 0.00 0.00 4.63
917 3419 4.447342 GGTGGCTGGTGGGATGGG 62.447 72.222 0.00 0.00 0.00 4.00
955 3457 3.423154 GAACTCTTGGGCGGTGCG 61.423 66.667 0.00 0.00 0.00 5.34
956 3458 3.423154 CGAACTCTTGGGCGGTGC 61.423 66.667 0.00 0.00 0.00 5.01
957 3459 2.027625 GACGAACTCTTGGGCGGTG 61.028 63.158 0.00 0.00 0.00 4.94
958 3460 2.342648 GACGAACTCTTGGGCGGT 59.657 61.111 0.00 0.00 0.00 5.68
959 3461 2.434359 GGACGAACTCTTGGGCGG 60.434 66.667 0.00 0.00 0.00 6.13
960 3462 2.809601 CGGACGAACTCTTGGGCG 60.810 66.667 0.00 0.00 0.00 6.13
961 3463 1.737008 GACGGACGAACTCTTGGGC 60.737 63.158 0.00 0.00 0.00 5.36
962 3464 1.080025 GGACGGACGAACTCTTGGG 60.080 63.158 0.00 0.00 0.00 4.12
989 3491 2.537560 GCGGCCATCGATCCAACAG 61.538 63.158 2.24 0.00 42.43 3.16
1091 3593 2.100197 AGACCGGATCAACGAGATTCA 58.900 47.619 9.46 0.00 37.00 2.57
1092 3594 2.099263 TCAGACCGGATCAACGAGATTC 59.901 50.000 9.46 0.00 37.00 2.52
1094 3596 1.763968 TCAGACCGGATCAACGAGAT 58.236 50.000 9.46 0.00 40.48 2.75
1095 3597 1.541379 TTCAGACCGGATCAACGAGA 58.459 50.000 9.46 0.00 35.47 4.04
1118 3686 4.525874 CAGATATGGATCAGAGCTGGTGTA 59.474 45.833 0.00 0.00 35.78 2.90
1126 3694 5.930569 TGCGAAATTCAGATATGGATCAGAG 59.069 40.000 0.00 0.00 34.17 3.35
1165 3747 2.034687 CCTGGGGAAGTGGCAGTG 59.965 66.667 0.00 0.00 0.00 3.66
1170 3752 2.124570 CGATGCCTGGGGAAGTGG 60.125 66.667 0.00 0.00 0.00 4.00
1171 3753 1.450312 GTCGATGCCTGGGGAAGTG 60.450 63.158 0.00 0.00 0.00 3.16
1175 3757 2.896677 ATCTGGTCGATGCCTGGGGA 62.897 60.000 0.00 0.00 0.00 4.81
1176 3758 2.388890 GATCTGGTCGATGCCTGGGG 62.389 65.000 0.00 0.00 30.84 4.96
1177 3759 1.070445 GATCTGGTCGATGCCTGGG 59.930 63.158 0.00 0.00 30.84 4.45
1178 3760 4.766970 GATCTGGTCGATGCCTGG 57.233 61.111 0.00 0.00 30.84 4.45
1328 3913 3.255379 CTTCTTAGCGGCGCCGTC 61.255 66.667 45.02 35.99 42.09 4.79
1330 3915 4.508128 TCCTTCTTAGCGGCGCCG 62.508 66.667 43.13 43.13 43.09 6.46
1332 3917 2.461945 GGTTCCTTCTTAGCGGCGC 61.462 63.158 26.86 26.86 0.00 6.53
1335 3920 1.209504 TGATGGGTTCCTTCTTAGCGG 59.790 52.381 0.00 0.00 0.00 5.52
1339 3924 3.650942 ACACAGTGATGGGTTCCTTCTTA 59.349 43.478 7.81 0.00 0.00 2.10
1348 3948 1.080093 CGCGTACACAGTGATGGGT 60.080 57.895 7.81 0.00 0.00 4.51
1351 3951 2.788176 CGGCGCGTACACAGTGATG 61.788 63.158 7.81 0.00 0.00 3.07
1353 3953 3.968568 ACGGCGCGTACACAGTGA 61.969 61.111 6.90 0.00 38.73 3.41
1414 4017 4.228567 TCGGCGCTGTGGTTGTGA 62.229 61.111 17.37 0.00 0.00 3.58
1418 4021 4.379243 CTCCTCGGCGCTGTGGTT 62.379 66.667 30.74 0.00 0.00 3.67
1468 4071 1.917782 GCCGGCTACGAAATGTGCAA 61.918 55.000 22.15 0.00 44.60 4.08
1504 4115 2.165301 CGATCACCGGCGAAGGAAC 61.165 63.158 9.30 0.32 34.73 3.62
1506 4117 2.752640 TCGATCACCGGCGAAGGA 60.753 61.111 9.30 2.53 39.14 3.36
1534 4145 1.651987 CTTACACGGCCAGGTACATG 58.348 55.000 2.24 0.00 0.00 3.21
1537 4148 1.449070 GCCTTACACGGCCAGGTAC 60.449 63.158 2.24 0.00 44.41 3.34
1544 4155 2.438954 CGTACACGCCTTACACGGC 61.439 63.158 0.00 0.00 46.68 5.68
1546 4157 0.431984 CAACGTACACGCCTTACACG 59.568 55.000 0.85 0.00 44.43 4.49
1547 4158 0.162294 GCAACGTACACGCCTTACAC 59.838 55.000 0.85 0.00 44.43 2.90
1548 4159 1.276820 CGCAACGTACACGCCTTACA 61.277 55.000 0.85 0.00 44.43 2.41
1549 4160 1.413368 CGCAACGTACACGCCTTAC 59.587 57.895 0.85 0.00 44.43 2.34
1550 4161 2.374226 GCGCAACGTACACGCCTTA 61.374 57.895 16.21 0.00 46.63 2.69
1551 4162 3.708734 GCGCAACGTACACGCCTT 61.709 61.111 16.21 0.00 46.63 4.35
1584 4199 4.491942 CGTTACAAATTAAGCAGATGCACG 59.508 41.667 7.68 0.41 45.16 5.34
1669 4295 1.270893 GGTCCTTCTCCACACCTTGTC 60.271 57.143 0.00 0.00 0.00 3.18
1671 4297 0.764890 TGGTCCTTCTCCACACCTTG 59.235 55.000 0.00 0.00 0.00 3.61
1720 4350 1.534729 GGGGCACTCGATGAACTTTT 58.465 50.000 0.00 0.00 0.00 2.27
1730 4360 1.606313 ACCAATTTGGGGGCACTCG 60.606 57.895 19.39 0.00 43.37 4.18
1733 4363 1.859302 TATCACCAATTTGGGGGCAC 58.141 50.000 17.59 0.00 42.59 5.01
1765 4397 3.612479 GCTGCACCTCCAGTTTATTTGTG 60.612 47.826 0.00 0.00 35.28 3.33
1816 4498 4.970003 CAGAGTTCAAACTTTTTACTGGCG 59.030 41.667 0.00 0.00 39.88 5.69
1817 4499 6.131544 TCAGAGTTCAAACTTTTTACTGGC 57.868 37.500 0.00 0.00 39.88 4.85
1955 4637 8.833493 ACGGTTAGCAATTTTATTAGGTCATAC 58.167 33.333 0.00 0.00 0.00 2.39
2089 4772 0.322975 AGCCCAGTTCTGCACTAGTG 59.677 55.000 18.93 18.93 32.76 2.74
2090 4773 1.938585 TAGCCCAGTTCTGCACTAGT 58.061 50.000 0.00 0.00 32.76 2.57
2091 4774 3.553922 GCTATAGCCCAGTTCTGCACTAG 60.554 52.174 14.13 0.00 31.81 2.57
2092 4775 2.365617 GCTATAGCCCAGTTCTGCACTA 59.634 50.000 14.13 0.00 31.81 2.74
2093 4776 1.139853 GCTATAGCCCAGTTCTGCACT 59.860 52.381 14.13 0.00 32.83 4.40
2094 4777 1.134401 TGCTATAGCCCAGTTCTGCAC 60.134 52.381 21.84 0.00 41.18 4.57
2095 4778 1.134401 GTGCTATAGCCCAGTTCTGCA 60.134 52.381 21.84 0.00 41.18 4.41
2096 4779 1.587547 GTGCTATAGCCCAGTTCTGC 58.412 55.000 21.84 0.00 41.18 4.26
2097 4780 1.539065 CGGTGCTATAGCCCAGTTCTG 60.539 57.143 21.84 6.86 41.18 3.02
2098 4781 0.753262 CGGTGCTATAGCCCAGTTCT 59.247 55.000 21.84 0.00 41.18 3.01
2099 4782 0.249911 CCGGTGCTATAGCCCAGTTC 60.250 60.000 21.84 5.62 41.18 3.01
2100 4783 0.981277 ACCGGTGCTATAGCCCAGTT 60.981 55.000 21.84 0.00 41.18 3.16
2101 4784 0.981277 AACCGGTGCTATAGCCCAGT 60.981 55.000 21.84 16.54 41.18 4.00
2102 4785 0.249911 GAACCGGTGCTATAGCCCAG 60.250 60.000 21.84 15.95 41.18 4.45
2103 4786 1.827394 GAACCGGTGCTATAGCCCA 59.173 57.895 21.84 1.03 41.18 5.36
2104 4787 1.300697 CGAACCGGTGCTATAGCCC 60.301 63.158 21.84 19.43 41.18 5.19
2105 4788 0.670162 TACGAACCGGTGCTATAGCC 59.330 55.000 21.84 12.70 41.18 3.93
2106 4789 2.391879 CTTACGAACCGGTGCTATAGC 58.608 52.381 18.18 18.18 42.50 2.97
2107 4790 2.861360 GCCTTACGAACCGGTGCTATAG 60.861 54.545 8.52 2.49 0.00 1.31
2108 4791 1.067516 GCCTTACGAACCGGTGCTATA 59.932 52.381 8.52 0.00 0.00 1.31
2109 4792 0.179092 GCCTTACGAACCGGTGCTAT 60.179 55.000 8.52 0.00 0.00 2.97
2110 4793 1.216178 GCCTTACGAACCGGTGCTA 59.784 57.895 8.52 0.00 0.00 3.49
2111 4794 2.047560 GCCTTACGAACCGGTGCT 60.048 61.111 8.52 0.00 0.00 4.40
2112 4795 3.122971 GGCCTTACGAACCGGTGC 61.123 66.667 8.52 4.53 0.00 5.01
2113 4796 2.435410 GGGCCTTACGAACCGGTG 60.435 66.667 8.52 0.00 0.00 4.94
2114 4797 1.771783 AAAGGGCCTTACGAACCGGT 61.772 55.000 21.25 0.00 0.00 5.28
2115 4798 0.249955 TAAAGGGCCTTACGAACCGG 59.750 55.000 21.25 0.00 0.00 5.28
2116 4799 1.066645 ACTAAAGGGCCTTACGAACCG 60.067 52.381 21.25 5.60 0.00 4.44
2117 4800 2.353323 CACTAAAGGGCCTTACGAACC 58.647 52.381 21.25 0.00 0.00 3.62
2118 4801 1.736126 GCACTAAAGGGCCTTACGAAC 59.264 52.381 21.25 5.99 0.00 3.95
2119 4802 1.339342 GGCACTAAAGGGCCTTACGAA 60.339 52.381 21.25 4.81 46.74 3.85
2120 4803 0.251073 GGCACTAAAGGGCCTTACGA 59.749 55.000 21.25 7.25 46.74 3.43
2121 4804 2.776659 GGCACTAAAGGGCCTTACG 58.223 57.895 21.25 15.66 46.74 3.18
2126 4809 2.035155 AACCGGCACTAAAGGGCC 59.965 61.111 13.51 13.51 46.80 5.80
2127 4810 2.396157 CGAACCGGCACTAAAGGGC 61.396 63.158 0.00 0.00 0.00 5.19
2128 4811 0.604511 AACGAACCGGCACTAAAGGG 60.605 55.000 0.00 0.00 0.00 3.95
2129 4812 2.083167 TAACGAACCGGCACTAAAGG 57.917 50.000 0.00 0.00 0.00 3.11
2130 4813 2.158254 GGTTAACGAACCGGCACTAAAG 59.842 50.000 0.00 0.00 45.73 1.85
2131 4814 2.142319 GGTTAACGAACCGGCACTAAA 58.858 47.619 0.00 0.00 45.73 1.85
2132 4815 1.794512 GGTTAACGAACCGGCACTAA 58.205 50.000 0.00 0.00 45.73 2.24
2133 4816 3.512978 GGTTAACGAACCGGCACTA 57.487 52.632 0.00 0.00 45.73 2.74
2134 4817 4.366603 GGTTAACGAACCGGCACT 57.633 55.556 0.00 0.00 45.73 4.40
2140 4823 6.362479 CACTTTAGTGCCGGTTAACGAACC 62.362 50.000 1.90 0.00 44.16 3.62
2141 4824 3.363280 CACTTTAGTGCCGGTTAACGAAC 60.363 47.826 1.90 0.00 41.53 3.95
2142 4825 2.801679 CACTTTAGTGCCGGTTAACGAA 59.198 45.455 1.90 0.00 41.53 3.85
2143 4826 2.406130 CACTTTAGTGCCGGTTAACGA 58.594 47.619 1.90 0.00 41.53 3.85
2144 4827 2.867456 CACTTTAGTGCCGGTTAACG 57.133 50.000 1.90 0.63 39.39 3.18
2154 4837 9.836379 GGGACCTTTAGTACCCACACTTTAGTG 62.836 48.148 8.29 8.29 44.99 2.74
2155 4838 5.012458 GGACCTTTAGTACCCACACTTTAGT 59.988 44.000 0.00 0.00 0.00 2.24
2156 4839 5.485620 GGACCTTTAGTACCCACACTTTAG 58.514 45.833 0.00 0.00 0.00 1.85
2157 4840 4.286808 GGGACCTTTAGTACCCACACTTTA 59.713 45.833 0.00 0.00 44.99 1.85
2158 4841 3.073503 GGGACCTTTAGTACCCACACTTT 59.926 47.826 0.00 0.00 44.99 2.66
2159 4842 2.641321 GGGACCTTTAGTACCCACACTT 59.359 50.000 0.00 0.00 44.99 3.16
2160 4843 2.263545 GGGACCTTTAGTACCCACACT 58.736 52.381 0.00 0.00 44.99 3.55
2161 4844 2.775911 GGGACCTTTAGTACCCACAC 57.224 55.000 0.00 0.00 44.99 3.82
2176 4859 4.498241 CGTAACCTGTACTAAAAGGGGAC 58.502 47.826 2.34 0.00 37.94 4.46
2177 4860 3.055891 GCGTAACCTGTACTAAAAGGGGA 60.056 47.826 2.34 0.00 37.94 4.81
2178 4861 3.264947 GCGTAACCTGTACTAAAAGGGG 58.735 50.000 2.34 0.00 37.94 4.79
2179 4862 3.681417 GTGCGTAACCTGTACTAAAAGGG 59.319 47.826 2.34 0.00 37.94 3.95
2180 4863 3.365820 CGTGCGTAACCTGTACTAAAAGG 59.634 47.826 0.00 0.00 39.65 3.11
2181 4864 4.229096 TCGTGCGTAACCTGTACTAAAAG 58.771 43.478 0.00 0.00 0.00 2.27
2182 4865 4.235939 TCGTGCGTAACCTGTACTAAAA 57.764 40.909 0.00 0.00 0.00 1.52
2183 4866 3.913548 TCGTGCGTAACCTGTACTAAA 57.086 42.857 0.00 0.00 0.00 1.85
2184 4867 3.564511 GTTCGTGCGTAACCTGTACTAA 58.435 45.455 0.00 0.00 0.00 2.24
2185 4868 2.095263 GGTTCGTGCGTAACCTGTACTA 60.095 50.000 14.18 0.00 42.63 1.82
2186 4869 1.336240 GGTTCGTGCGTAACCTGTACT 60.336 52.381 14.18 0.00 42.63 2.73
2187 4870 1.063031 GGTTCGTGCGTAACCTGTAC 58.937 55.000 14.18 0.00 42.63 2.90
2188 4871 0.387112 CGGTTCGTGCGTAACCTGTA 60.387 55.000 17.09 0.00 43.55 2.74
2189 4872 1.662446 CGGTTCGTGCGTAACCTGT 60.662 57.895 17.09 0.00 43.55 4.00
2190 4873 1.611592 GACGGTTCGTGCGTAACCTG 61.612 60.000 17.09 14.11 43.55 4.00
2191 4874 1.372128 GACGGTTCGTGCGTAACCT 60.372 57.895 17.09 9.18 43.55 3.50
2192 4875 2.709999 CGACGGTTCGTGCGTAACC 61.710 63.158 0.00 12.51 41.37 2.85
2193 4876 2.758840 CGACGGTTCGTGCGTAAC 59.241 61.111 0.00 0.00 41.37 2.50
2202 4885 3.928375 TGGTTTATCTTTAGCGACGGTTC 59.072 43.478 4.26 0.00 0.00 3.62
2203 4886 3.681417 GTGGTTTATCTTTAGCGACGGTT 59.319 43.478 4.26 0.00 0.00 4.44
2204 4887 3.256558 GTGGTTTATCTTTAGCGACGGT 58.743 45.455 4.41 4.41 0.00 4.83
2205 4888 2.280708 CGTGGTTTATCTTTAGCGACGG 59.719 50.000 0.00 0.00 0.00 4.79
2206 4889 2.919229 ACGTGGTTTATCTTTAGCGACG 59.081 45.455 0.00 0.00 0.00 5.12
2207 4890 4.489841 CGAACGTGGTTTATCTTTAGCGAC 60.490 45.833 0.00 0.00 0.00 5.19
2208 4891 3.609373 CGAACGTGGTTTATCTTTAGCGA 59.391 43.478 0.00 0.00 0.00 4.93
2209 4892 3.241868 CCGAACGTGGTTTATCTTTAGCG 60.242 47.826 0.00 0.00 0.00 4.26
2210 4893 3.928375 TCCGAACGTGGTTTATCTTTAGC 59.072 43.478 0.00 0.00 0.00 3.09
2211 4894 4.565564 CCTCCGAACGTGGTTTATCTTTAG 59.434 45.833 0.00 0.00 0.00 1.85
2212 4895 4.497300 CCTCCGAACGTGGTTTATCTTTA 58.503 43.478 0.00 0.00 0.00 1.85
2213 4896 3.332034 CCTCCGAACGTGGTTTATCTTT 58.668 45.455 0.00 0.00 0.00 2.52
2214 4897 2.933928 GCCTCCGAACGTGGTTTATCTT 60.934 50.000 0.00 0.00 0.00 2.40
2215 4898 1.405121 GCCTCCGAACGTGGTTTATCT 60.405 52.381 0.00 0.00 0.00 1.98
2216 4899 1.004595 GCCTCCGAACGTGGTTTATC 58.995 55.000 0.00 0.00 0.00 1.75
2217 4900 0.738412 CGCCTCCGAACGTGGTTTAT 60.738 55.000 0.00 0.00 36.29 1.40
2218 4901 1.373246 CGCCTCCGAACGTGGTTTA 60.373 57.895 0.00 0.00 36.29 2.01
2219 4902 2.663852 CGCCTCCGAACGTGGTTT 60.664 61.111 0.00 0.00 36.29 3.27
2223 4906 4.764336 TACGCGCCTCCGAACGTG 62.764 66.667 5.73 0.00 44.89 4.49
2224 4907 4.471726 CTACGCGCCTCCGAACGT 62.472 66.667 5.73 0.00 42.22 3.99
2226 4909 2.824071 TTTCCTACGCGCCTCCGAAC 62.824 60.000 5.73 0.00 36.29 3.95
2227 4910 1.952102 ATTTCCTACGCGCCTCCGAA 61.952 55.000 5.73 0.00 36.29 4.30
2228 4911 2.420568 ATTTCCTACGCGCCTCCGA 61.421 57.895 5.73 0.00 36.29 4.55
2229 4912 2.106332 ATTTCCTACGCGCCTCCG 59.894 61.111 5.73 0.00 37.57 4.63
2230 4913 0.743345 AACATTTCCTACGCGCCTCC 60.743 55.000 5.73 0.00 0.00 4.30
2231 4914 1.084289 AAACATTTCCTACGCGCCTC 58.916 50.000 5.73 0.00 0.00 4.70
2232 4915 0.802494 CAAACATTTCCTACGCGCCT 59.198 50.000 5.73 0.00 0.00 5.52
2233 4916 0.179174 CCAAACATTTCCTACGCGCC 60.179 55.000 5.73 0.00 0.00 6.53
2234 4917 0.179174 CCCAAACATTTCCTACGCGC 60.179 55.000 5.73 0.00 0.00 6.86
2235 4918 1.135803 CACCCAAACATTTCCTACGCG 60.136 52.381 3.53 3.53 0.00 6.01
2236 4919 1.883926 ACACCCAAACATTTCCTACGC 59.116 47.619 0.00 0.00 0.00 4.42
2237 4920 2.882137 ACACACCCAAACATTTCCTACG 59.118 45.455 0.00 0.00 0.00 3.51
2238 4921 4.929819 AACACACCCAAACATTTCCTAC 57.070 40.909 0.00 0.00 0.00 3.18
2239 4922 5.395768 CCAAAACACACCCAAACATTTCCTA 60.396 40.000 0.00 0.00 0.00 2.94
2240 4923 4.512484 CAAAACACACCCAAACATTTCCT 58.488 39.130 0.00 0.00 0.00 3.36
2241 4924 3.625313 CCAAAACACACCCAAACATTTCC 59.375 43.478 0.00 0.00 0.00 3.13
2242 4925 4.257731 ACCAAAACACACCCAAACATTTC 58.742 39.130 0.00 0.00 0.00 2.17
2243 4926 4.293662 ACCAAAACACACCCAAACATTT 57.706 36.364 0.00 0.00 0.00 2.32
2244 4927 3.990959 ACCAAAACACACCCAAACATT 57.009 38.095 0.00 0.00 0.00 2.71
2245 4928 3.990959 AACCAAAACACACCCAAACAT 57.009 38.095 0.00 0.00 0.00 2.71
2246 4929 3.771577 AAACCAAAACACACCCAAACA 57.228 38.095 0.00 0.00 0.00 2.83
2247 4930 3.815962 ACAAAACCAAAACACACCCAAAC 59.184 39.130 0.00 0.00 0.00 2.93
2248 4931 4.086706 ACAAAACCAAAACACACCCAAA 57.913 36.364 0.00 0.00 0.00 3.28
2249 4932 3.771577 ACAAAACCAAAACACACCCAA 57.228 38.095 0.00 0.00 0.00 4.12
2250 4933 3.771577 AACAAAACCAAAACACACCCA 57.228 38.095 0.00 0.00 0.00 4.51
2251 4934 5.440234 AAAAACAAAACCAAAACACACCC 57.560 34.783 0.00 0.00 0.00 4.61
2331 5014 9.349713 ACTTTCACCTAATGATTTAACAACTCA 57.650 29.630 0.00 0.00 37.11 3.41
2334 5017 9.836076 GGTACTTTCACCTAATGATTTAACAAC 57.164 33.333 0.00 0.00 37.11 3.32
2335 5018 8.723311 CGGTACTTTCACCTAATGATTTAACAA 58.277 33.333 0.00 0.00 37.11 2.83
2336 5019 7.148373 GCGGTACTTTCACCTAATGATTTAACA 60.148 37.037 0.00 0.00 37.11 2.41
2337 5020 7.148373 TGCGGTACTTTCACCTAATGATTTAAC 60.148 37.037 0.00 0.00 37.11 2.01
2338 5021 6.879993 TGCGGTACTTTCACCTAATGATTTAA 59.120 34.615 0.00 0.00 37.11 1.52
2339 5022 6.408035 TGCGGTACTTTCACCTAATGATTTA 58.592 36.000 0.00 0.00 37.11 1.40
2340 5023 5.250200 TGCGGTACTTTCACCTAATGATTT 58.750 37.500 0.00 0.00 37.11 2.17
2341 5024 4.839121 TGCGGTACTTTCACCTAATGATT 58.161 39.130 0.00 0.00 37.11 2.57
2342 5025 4.161565 TCTGCGGTACTTTCACCTAATGAT 59.838 41.667 0.00 0.00 37.11 2.45
2343 5026 3.512329 TCTGCGGTACTTTCACCTAATGA 59.488 43.478 0.00 0.00 36.35 2.57
2344 5027 3.857052 TCTGCGGTACTTTCACCTAATG 58.143 45.455 0.00 0.00 36.35 1.90
2345 5028 4.755266 ATCTGCGGTACTTTCACCTAAT 57.245 40.909 0.00 0.00 36.35 1.73
2346 5029 4.546829 AATCTGCGGTACTTTCACCTAA 57.453 40.909 0.00 0.00 36.35 2.69
2347 5030 4.708421 ACTAATCTGCGGTACTTTCACCTA 59.292 41.667 0.00 0.00 36.35 3.08
2348 5031 3.514309 ACTAATCTGCGGTACTTTCACCT 59.486 43.478 0.00 0.00 36.35 4.00
2349 5032 3.858247 ACTAATCTGCGGTACTTTCACC 58.142 45.455 0.00 0.00 35.04 4.02
2350 5033 5.407387 TCAAACTAATCTGCGGTACTTTCAC 59.593 40.000 0.00 0.00 0.00 3.18
2351 5034 5.407387 GTCAAACTAATCTGCGGTACTTTCA 59.593 40.000 0.00 0.00 0.00 2.69
2352 5035 5.638234 AGTCAAACTAATCTGCGGTACTTTC 59.362 40.000 0.00 0.00 0.00 2.62
2353 5036 5.408604 CAGTCAAACTAATCTGCGGTACTTT 59.591 40.000 0.00 0.00 0.00 2.66
2354 5037 4.929808 CAGTCAAACTAATCTGCGGTACTT 59.070 41.667 0.00 0.00 0.00 2.24
2355 5038 4.495422 CAGTCAAACTAATCTGCGGTACT 58.505 43.478 0.00 0.00 0.00 2.73
2356 5039 3.617263 CCAGTCAAACTAATCTGCGGTAC 59.383 47.826 0.00 0.00 0.00 3.34
2357 5040 3.512329 TCCAGTCAAACTAATCTGCGGTA 59.488 43.478 0.00 0.00 0.00 4.02
2358 5041 2.301870 TCCAGTCAAACTAATCTGCGGT 59.698 45.455 0.00 0.00 0.00 5.68
2359 5042 2.972625 TCCAGTCAAACTAATCTGCGG 58.027 47.619 0.00 0.00 0.00 5.69
2360 5043 3.242543 GCATCCAGTCAAACTAATCTGCG 60.243 47.826 0.00 0.00 0.00 5.18
2361 5044 3.691118 TGCATCCAGTCAAACTAATCTGC 59.309 43.478 0.00 0.00 0.00 4.26
2362 5045 5.356190 ACATGCATCCAGTCAAACTAATCTG 59.644 40.000 0.00 0.00 0.00 2.90
2363 5046 5.356190 CACATGCATCCAGTCAAACTAATCT 59.644 40.000 0.00 0.00 0.00 2.40
2364 5047 5.449588 CCACATGCATCCAGTCAAACTAATC 60.450 44.000 0.00 0.00 0.00 1.75
2365 5048 4.400251 CCACATGCATCCAGTCAAACTAAT 59.600 41.667 0.00 0.00 0.00 1.73
2366 5049 3.758023 CCACATGCATCCAGTCAAACTAA 59.242 43.478 0.00 0.00 0.00 2.24
2367 5050 3.008923 TCCACATGCATCCAGTCAAACTA 59.991 43.478 0.00 0.00 0.00 2.24
2368 5051 2.165167 CCACATGCATCCAGTCAAACT 58.835 47.619 0.00 0.00 0.00 2.66
2369 5052 2.161855 TCCACATGCATCCAGTCAAAC 58.838 47.619 0.00 0.00 0.00 2.93
2370 5053 2.583024 TCCACATGCATCCAGTCAAA 57.417 45.000 0.00 0.00 0.00 2.69
2371 5054 2.646930 GATCCACATGCATCCAGTCAA 58.353 47.619 0.00 0.00 0.00 3.18
2372 5055 1.134007 GGATCCACATGCATCCAGTCA 60.134 52.381 6.95 0.00 38.84 3.41
2373 5056 1.142465 AGGATCCACATGCATCCAGTC 59.858 52.381 15.82 0.00 41.16 3.51
2374 5057 1.219773 AGGATCCACATGCATCCAGT 58.780 50.000 15.82 0.00 41.16 4.00
2375 5058 2.874861 GCTAGGATCCACATGCATCCAG 60.875 54.545 15.82 13.55 41.16 3.86
2376 5059 1.072806 GCTAGGATCCACATGCATCCA 59.927 52.381 15.82 6.40 41.16 3.41
2377 5060 1.350351 AGCTAGGATCCACATGCATCC 59.650 52.381 15.82 9.88 39.24 3.51
2378 5061 2.855209 AGCTAGGATCCACATGCATC 57.145 50.000 15.82 0.00 0.00 3.91
2379 5062 3.649981 ACTTAGCTAGGATCCACATGCAT 59.350 43.478 15.82 0.00 0.00 3.96
2380 5063 3.041211 ACTTAGCTAGGATCCACATGCA 58.959 45.455 15.82 0.00 0.00 3.96
2381 5064 3.070159 TGACTTAGCTAGGATCCACATGC 59.930 47.826 15.82 11.91 0.00 4.06
2382 5065 4.944619 TGACTTAGCTAGGATCCACATG 57.055 45.455 15.82 1.70 0.00 3.21
2383 5066 5.150715 TGATGACTTAGCTAGGATCCACAT 58.849 41.667 15.82 6.85 0.00 3.21
2384 5067 4.546674 TGATGACTTAGCTAGGATCCACA 58.453 43.478 15.82 0.00 0.00 4.17
2385 5068 5.069781 ACTTGATGACTTAGCTAGGATCCAC 59.930 44.000 15.82 2.63 0.00 4.02
2386 5069 5.211973 ACTTGATGACTTAGCTAGGATCCA 58.788 41.667 15.82 5.04 0.00 3.41
2387 5070 5.799827 ACTTGATGACTTAGCTAGGATCC 57.200 43.478 10.24 2.48 0.00 3.36
2400 5083 9.265901 GGACATGGCATATATATACTTGATGAC 57.734 37.037 0.00 0.00 0.00 3.06
2401 5084 8.991275 TGGACATGGCATATATATACTTGATGA 58.009 33.333 0.00 2.03 0.00 2.92
2402 5085 9.788889 ATGGACATGGCATATATATACTTGATG 57.211 33.333 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.