Multiple sequence alignment - TraesCS2A01G539000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G539000 chr2A 100.000 2565 0 0 1 2565 751545620 751548184 0.000000e+00 4737.0
1 TraesCS2A01G539000 chr2A 82.143 364 43 13 1083 1441 751662671 751663017 2.500000e-75 292.0
2 TraesCS2A01G539000 chr2A 89.840 187 18 1 1261 1446 751609225 751609411 3.300000e-59 239.0
3 TraesCS2A01G539000 chr2A 88.158 152 17 1 1075 1226 751609009 751609159 2.030000e-41 180.0
4 TraesCS2A01G539000 chr2A 83.810 105 15 2 1096 1199 752048295 752048398 5.840000e-17 99.0
5 TraesCS2A01G539000 chr2A 82.569 109 12 3 2195 2303 751663467 751663568 3.520000e-14 89.8
6 TraesCS2A01G539000 chr2B 85.219 1556 138 24 1000 2491 759741756 759743283 0.000000e+00 1515.0
7 TraesCS2A01G539000 chr2B 90.291 618 37 10 1253 1849 759677108 759677723 0.000000e+00 787.0
8 TraesCS2A01G539000 chr2B 93.583 374 21 3 2165 2538 759677762 759678132 2.880000e-154 555.0
9 TraesCS2A01G539000 chr2B 82.247 445 25 17 549 983 759741299 759741699 4.090000e-88 335.0
10 TraesCS2A01G539000 chr2B 79.740 385 60 9 1101 1470 759765470 759765851 1.960000e-66 263.0
11 TraesCS2A01G539000 chr2B 86.432 199 16 3 527 724 759674233 759674421 9.300000e-50 207.0
12 TraesCS2A01G539000 chr2B 76.484 455 47 25 1282 1687 759818042 759818485 2.600000e-45 193.0
13 TraesCS2A01G539000 chr2B 82.653 196 24 9 1017 1203 759881834 759882028 5.680000e-37 165.0
14 TraesCS2A01G539000 chr2B 78.516 256 43 4 1282 1531 759882145 759882394 9.500000e-35 158.0
15 TraesCS2A01G539000 chr2B 83.478 115 11 2 2194 2307 759884588 759884695 1.620000e-17 100.0
16 TraesCS2A01G539000 chr2B 81.553 103 14 5 1472 1572 760153806 760153905 2.120000e-11 80.5
17 TraesCS2A01G539000 chr2B 87.879 66 7 1 1529 1593 760119366 760119431 2.740000e-10 76.8
18 TraesCS2A01G539000 chr2B 86.364 66 8 1 2383 2447 759766568 759766633 1.270000e-08 71.3
19 TraesCS2A01G539000 chr2B 85.714 63 7 2 2476 2538 759743300 759743360 5.920000e-07 65.8
20 TraesCS2A01G539000 chrUn 90.291 618 37 10 1253 1849 23148879 23148264 0.000000e+00 787.0
21 TraesCS2A01G539000 chrUn 93.583 374 21 3 2165 2538 23148225 23147855 2.880000e-154 555.0
22 TraesCS2A01G539000 chrUn 85.563 471 37 12 527 986 23151413 23150963 5.000000e-127 464.0
23 TraesCS2A01G539000 chrUn 90.045 221 17 1 1000 1220 23150909 23150694 5.400000e-72 281.0
24 TraesCS2A01G539000 chrUn 83.333 96 9 3 1632 1722 23307602 23307695 5.880000e-12 82.4
25 TraesCS2A01G539000 chr2D 85.541 740 67 17 1819 2538 620154420 620155139 0.000000e+00 737.0
26 TraesCS2A01G539000 chr2D 89.636 550 28 8 1259 1781 620153873 620154420 0.000000e+00 673.0
27 TraesCS2A01G539000 chr2D 88.034 585 35 9 408 983 620152972 620153530 0.000000e+00 660.0
28 TraesCS2A01G539000 chr2D 90.074 272 27 0 983 1254 620153558 620153829 1.130000e-93 353.0
29 TraesCS2A01G539000 chr2D 80.556 432 56 19 1064 1473 620193741 620194166 8.910000e-80 307.0
30 TraesCS2A01G539000 chr2D 80.734 327 42 8 1282 1590 620199183 620199506 4.270000e-58 235.0
31 TraesCS2A01G539000 chr2D 88.194 144 16 1 1083 1226 620198943 620199085 1.220000e-38 171.0
32 TraesCS2A01G539000 chr2D 75.126 398 69 18 1083 1458 620447837 620448226 2.640000e-35 159.0
33 TraesCS2A01G539000 chr2D 82.524 103 14 4 1472 1572 620282033 620282133 1.260000e-13 87.9
34 TraesCS2A01G539000 chr2D 89.231 65 7 0 2383 2447 620194852 620194916 5.880000e-12 82.4
35 TraesCS2A01G539000 chr2D 79.832 119 14 10 1476 1591 620270829 620270940 7.610000e-11 78.7
36 TraesCS2A01G539000 chr3B 92.048 415 17 6 1 407 826957891 826958297 1.030000e-158 569.0
37 TraesCS2A01G539000 chr6B 85.625 160 15 6 221 377 204634935 204634781 7.340000e-36 161.0
38 TraesCS2A01G539000 chr6B 90.217 92 7 1 286 377 204636085 204635996 4.480000e-23 119.0
39 TraesCS2A01G539000 chr1B 86.538 104 7 6 63 161 47946181 47946282 9.700000e-20 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G539000 chr2A 751545620 751548184 2564 False 4737.000000 4737 100.000000 1 2565 1 chr2A.!!$F1 2564
1 TraesCS2A01G539000 chr2B 759741299 759743360 2061 False 638.600000 1515 84.393333 549 2538 3 chr2B.!!$F5 1989
2 TraesCS2A01G539000 chr2B 759674233 759678132 3899 False 516.333333 787 90.102000 527 2538 3 chr2B.!!$F4 2011
3 TraesCS2A01G539000 chrUn 23147855 23151413 3558 True 521.750000 787 89.870500 527 2538 4 chrUn.!!$R1 2011
4 TraesCS2A01G539000 chr2D 620152972 620155139 2167 False 605.750000 737 88.321250 408 2538 4 chr2D.!!$F4 2130
5 TraesCS2A01G539000 chr2D 620198943 620199506 563 False 203.000000 235 84.464000 1083 1590 2 chr2D.!!$F6 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 277 0.034477 AAGATTAGGGTTGGCGTGGG 60.034 55.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2136 4424 0.455464 CATACACGTCTCGCGGTTGA 60.455 55.0 6.13 0.0 46.52 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.303586 GTGCGTTCGGTTAGTTTCTTAG 57.696 45.455 0.00 0.00 0.00 2.18
22 23 2.733026 TGCGTTCGGTTAGTTTCTTAGC 59.267 45.455 0.00 0.00 0.00 3.09
23 24 2.991866 GCGTTCGGTTAGTTTCTTAGCT 59.008 45.455 0.00 0.00 0.00 3.32
24 25 4.168760 GCGTTCGGTTAGTTTCTTAGCTA 58.831 43.478 0.00 0.00 0.00 3.32
25 26 4.264849 GCGTTCGGTTAGTTTCTTAGCTAG 59.735 45.833 0.00 0.00 0.00 3.42
26 27 4.264849 CGTTCGGTTAGTTTCTTAGCTAGC 59.735 45.833 6.62 6.62 0.00 3.42
27 28 5.409211 GTTCGGTTAGTTTCTTAGCTAGCT 58.591 41.667 23.12 23.12 0.00 3.32
28 29 6.558909 GTTCGGTTAGTTTCTTAGCTAGCTA 58.441 40.000 20.67 20.67 0.00 3.32
29 30 6.129053 TCGGTTAGTTTCTTAGCTAGCTAC 57.871 41.667 24.09 14.80 0.00 3.58
30 31 5.649395 TCGGTTAGTTTCTTAGCTAGCTACA 59.351 40.000 24.09 11.01 0.00 2.74
31 32 6.320672 TCGGTTAGTTTCTTAGCTAGCTACAT 59.679 38.462 24.09 8.93 0.00 2.29
32 33 6.418226 CGGTTAGTTTCTTAGCTAGCTACATG 59.582 42.308 24.09 16.19 0.00 3.21
33 34 6.201234 GGTTAGTTTCTTAGCTAGCTACATGC 59.799 42.308 24.09 12.89 43.29 4.06
42 43 3.711348 GCTACATGCGTGGAGAGC 58.289 61.111 22.91 16.77 38.71 4.09
43 44 1.142748 GCTACATGCGTGGAGAGCT 59.857 57.895 22.91 0.00 38.71 4.09
44 45 1.150567 GCTACATGCGTGGAGAGCTG 61.151 60.000 22.91 0.00 38.71 4.24
45 46 1.150567 CTACATGCGTGGAGAGCTGC 61.151 60.000 13.35 0.00 38.71 5.25
46 47 1.887344 TACATGCGTGGAGAGCTGCA 61.887 55.000 11.36 0.00 42.22 4.41
47 48 2.435586 ATGCGTGGAGAGCTGCAC 60.436 61.111 11.53 11.53 46.53 4.57
51 52 3.418068 GTGGAGAGCTGCACGCAC 61.418 66.667 6.38 4.60 41.81 5.34
52 53 3.619767 TGGAGAGCTGCACGCACT 61.620 61.111 1.02 8.84 42.48 4.40
53 54 2.275380 TGGAGAGCTGCACGCACTA 61.275 57.895 1.02 0.00 39.77 2.74
54 55 1.518133 GGAGAGCTGCACGCACTAG 60.518 63.158 1.02 0.00 39.77 2.57
55 56 1.518133 GAGAGCTGCACGCACTAGG 60.518 63.158 1.02 0.00 39.77 3.02
56 57 2.510238 GAGCTGCACGCACTAGGG 60.510 66.667 1.02 0.00 42.61 3.53
57 58 4.087892 AGCTGCACGCACTAGGGG 62.088 66.667 1.02 0.00 42.61 4.79
62 63 4.388499 CACGCACTAGGGGCCGTT 62.388 66.667 3.09 0.00 0.00 4.44
63 64 4.388499 ACGCACTAGGGGCCGTTG 62.388 66.667 3.09 4.85 0.00 4.10
65 66 4.410400 GCACTAGGGGCCGTTGCT 62.410 66.667 14.08 0.71 37.74 3.91
66 67 3.026431 GCACTAGGGGCCGTTGCTA 62.026 63.158 14.08 1.86 37.74 3.49
67 68 1.144057 CACTAGGGGCCGTTGCTAG 59.856 63.158 3.09 8.53 37.74 3.42
68 69 2.109181 CTAGGGGCCGTTGCTAGC 59.891 66.667 8.10 8.10 37.74 3.42
69 70 2.365105 TAGGGGCCGTTGCTAGCT 60.365 61.111 17.23 0.00 37.74 3.32
70 71 2.650813 CTAGGGGCCGTTGCTAGCTG 62.651 65.000 17.23 5.76 37.74 4.24
71 72 4.410400 GGGGCCGTTGCTAGCTGT 62.410 66.667 17.23 0.00 37.74 4.40
72 73 2.359975 GGGCCGTTGCTAGCTGTT 60.360 61.111 17.23 0.00 37.74 3.16
73 74 2.690778 GGGCCGTTGCTAGCTGTTG 61.691 63.158 17.23 3.47 37.74 3.33
74 75 2.690778 GGCCGTTGCTAGCTGTTGG 61.691 63.158 17.23 13.14 37.74 3.77
75 76 1.671054 GCCGTTGCTAGCTGTTGGA 60.671 57.895 17.23 0.00 33.53 3.53
76 77 1.639298 GCCGTTGCTAGCTGTTGGAG 61.639 60.000 17.23 0.00 33.53 3.86
77 78 1.021390 CCGTTGCTAGCTGTTGGAGG 61.021 60.000 17.23 5.98 0.00 4.30
78 79 1.639298 CGTTGCTAGCTGTTGGAGGC 61.639 60.000 17.23 0.00 0.00 4.70
79 80 0.606401 GTTGCTAGCTGTTGGAGGCA 60.606 55.000 17.23 0.00 0.00 4.75
80 81 0.321919 TTGCTAGCTGTTGGAGGCAG 60.322 55.000 17.23 0.00 37.06 4.85
91 92 4.570663 GAGGCAGCCGCGTCGTAT 62.571 66.667 5.55 0.00 42.60 3.06
92 93 4.873129 AGGCAGCCGCGTCGTATG 62.873 66.667 5.55 0.00 39.92 2.39
95 96 2.885644 CAGCCGCGTCGTATGCTT 60.886 61.111 4.92 0.00 30.08 3.91
96 97 2.125673 AGCCGCGTCGTATGCTTT 60.126 55.556 4.92 0.00 0.00 3.51
97 98 1.740296 AGCCGCGTCGTATGCTTTT 60.740 52.632 4.92 0.00 0.00 2.27
98 99 1.580132 GCCGCGTCGTATGCTTTTG 60.580 57.895 4.92 0.00 0.00 2.44
99 100 1.785321 CCGCGTCGTATGCTTTTGT 59.215 52.632 4.92 0.00 0.00 2.83
100 101 0.518355 CCGCGTCGTATGCTTTTGTG 60.518 55.000 4.92 0.00 0.00 3.33
101 102 1.120147 CGCGTCGTATGCTTTTGTGC 61.120 55.000 0.00 0.00 0.00 4.57
102 103 1.120147 GCGTCGTATGCTTTTGTGCG 61.120 55.000 0.00 0.00 35.36 5.34
103 104 1.120147 CGTCGTATGCTTTTGTGCGC 61.120 55.000 0.00 0.00 35.36 6.09
104 105 1.120147 GTCGTATGCTTTTGTGCGCG 61.120 55.000 0.00 0.00 35.36 6.86
105 106 1.154488 CGTATGCTTTTGTGCGCGT 60.154 52.632 8.43 0.00 35.36 6.01
106 107 1.120147 CGTATGCTTTTGTGCGCGTC 61.120 55.000 8.43 0.00 35.36 5.19
107 108 0.110419 GTATGCTTTTGTGCGCGTCA 60.110 50.000 8.43 3.08 35.36 4.35
108 109 0.801872 TATGCTTTTGTGCGCGTCAT 59.198 45.000 8.43 0.71 35.36 3.06
109 110 0.730155 ATGCTTTTGTGCGCGTCATG 60.730 50.000 8.43 3.16 35.36 3.07
110 111 2.709999 GCTTTTGTGCGCGTCATGC 61.710 57.895 8.43 8.92 41.47 4.06
136 137 2.356793 GGAGCATGCGGATCGAGG 60.357 66.667 13.01 0.00 30.89 4.63
137 138 2.730733 GAGCATGCGGATCGAGGA 59.269 61.111 13.01 0.00 0.00 3.71
138 139 1.663074 GAGCATGCGGATCGAGGAC 60.663 63.158 13.01 0.00 0.00 3.85
139 140 3.032609 GCATGCGGATCGAGGACG 61.033 66.667 0.00 0.00 41.26 4.79
148 149 3.500642 TCGAGGACGAGCGAGCTG 61.501 66.667 0.84 0.00 43.81 4.24
149 150 4.544689 CGAGGACGAGCGAGCTGG 62.545 72.222 0.84 3.56 42.66 4.85
150 151 4.200283 GAGGACGAGCGAGCTGGG 62.200 72.222 11.55 2.09 0.00 4.45
175 176 2.850404 CGTACGTGCGCATGTGTT 59.150 55.556 38.55 19.43 0.00 3.32
176 177 1.203065 CGTACGTGCGCATGTGTTT 59.797 52.632 38.55 19.08 0.00 2.83
177 178 0.435388 CGTACGTGCGCATGTGTTTA 59.565 50.000 38.55 20.69 0.00 2.01
178 179 1.524193 CGTACGTGCGCATGTGTTTAG 60.524 52.381 38.55 22.58 0.00 1.85
179 180 1.458064 GTACGTGCGCATGTGTTTAGT 59.542 47.619 38.55 17.31 0.00 2.24
180 181 0.941542 ACGTGCGCATGTGTTTAGTT 59.058 45.000 33.17 6.87 0.00 2.24
181 182 1.070175 ACGTGCGCATGTGTTTAGTTC 60.070 47.619 33.17 5.26 0.00 3.01
182 183 1.194547 CGTGCGCATGTGTTTAGTTCT 59.805 47.619 21.57 0.00 0.00 3.01
183 184 2.349438 CGTGCGCATGTGTTTAGTTCTT 60.349 45.455 21.57 0.00 0.00 2.52
184 185 2.973224 GTGCGCATGTGTTTAGTTCTTG 59.027 45.455 15.91 0.00 0.00 3.02
185 186 2.616376 TGCGCATGTGTTTAGTTCTTGT 59.384 40.909 5.66 0.00 0.00 3.16
186 187 3.810386 TGCGCATGTGTTTAGTTCTTGTA 59.190 39.130 5.66 0.00 0.00 2.41
187 188 4.454161 TGCGCATGTGTTTAGTTCTTGTAT 59.546 37.500 5.66 0.00 0.00 2.29
188 189 5.639931 TGCGCATGTGTTTAGTTCTTGTATA 59.360 36.000 5.66 0.00 0.00 1.47
189 190 6.147985 TGCGCATGTGTTTAGTTCTTGTATAA 59.852 34.615 5.66 0.00 0.00 0.98
190 191 7.018826 GCGCATGTGTTTAGTTCTTGTATAAA 58.981 34.615 0.30 0.00 0.00 1.40
191 192 7.696453 GCGCATGTGTTTAGTTCTTGTATAAAT 59.304 33.333 0.30 0.00 0.00 1.40
192 193 9.210426 CGCATGTGTTTAGTTCTTGTATAAATC 57.790 33.333 0.00 0.00 0.00 2.17
193 194 9.503427 GCATGTGTTTAGTTCTTGTATAAATCC 57.497 33.333 0.00 0.00 0.00 3.01
195 196 8.570068 TGTGTTTAGTTCTTGTATAAATCCCC 57.430 34.615 0.00 0.00 0.00 4.81
196 197 8.387813 TGTGTTTAGTTCTTGTATAAATCCCCT 58.612 33.333 0.00 0.00 0.00 4.79
197 198 8.890718 GTGTTTAGTTCTTGTATAAATCCCCTC 58.109 37.037 0.00 0.00 0.00 4.30
198 199 7.767198 TGTTTAGTTCTTGTATAAATCCCCTCG 59.233 37.037 0.00 0.00 0.00 4.63
199 200 5.952347 AGTTCTTGTATAAATCCCCTCGT 57.048 39.130 0.00 0.00 0.00 4.18
200 201 5.671493 AGTTCTTGTATAAATCCCCTCGTG 58.329 41.667 0.00 0.00 0.00 4.35
201 202 5.189145 AGTTCTTGTATAAATCCCCTCGTGT 59.811 40.000 0.00 0.00 0.00 4.49
202 203 6.381994 AGTTCTTGTATAAATCCCCTCGTGTA 59.618 38.462 0.00 0.00 0.00 2.90
203 204 6.152932 TCTTGTATAAATCCCCTCGTGTAC 57.847 41.667 0.00 0.00 0.00 2.90
204 205 5.895534 TCTTGTATAAATCCCCTCGTGTACT 59.104 40.000 0.00 0.00 0.00 2.73
205 206 5.524971 TGTATAAATCCCCTCGTGTACTG 57.475 43.478 0.00 0.00 0.00 2.74
206 207 2.973694 TAAATCCCCTCGTGTACTGC 57.026 50.000 0.00 0.00 0.00 4.40
207 208 1.276622 AAATCCCCTCGTGTACTGCT 58.723 50.000 0.00 0.00 0.00 4.24
208 209 0.824759 AATCCCCTCGTGTACTGCTC 59.175 55.000 0.00 0.00 0.00 4.26
209 210 1.384989 ATCCCCTCGTGTACTGCTCG 61.385 60.000 0.00 0.00 35.64 5.03
210 211 2.490217 CCCTCGTGTACTGCTCGG 59.510 66.667 0.00 0.00 35.12 4.63
211 212 2.341101 CCCTCGTGTACTGCTCGGT 61.341 63.158 0.00 0.00 35.12 4.69
212 213 1.154016 CCTCGTGTACTGCTCGGTG 60.154 63.158 0.00 0.00 35.12 4.94
213 214 1.579932 CTCGTGTACTGCTCGGTGT 59.420 57.895 0.00 0.00 35.12 4.16
214 215 0.729478 CTCGTGTACTGCTCGGTGTG 60.729 60.000 0.00 0.00 35.12 3.82
215 216 2.372690 CGTGTACTGCTCGGTGTGC 61.373 63.158 0.00 0.00 0.00 4.57
216 217 2.049526 TGTACTGCTCGGTGTGCG 60.050 61.111 0.00 0.00 0.00 5.34
217 218 2.257371 GTACTGCTCGGTGTGCGA 59.743 61.111 0.00 0.00 0.00 5.10
218 219 2.087009 GTACTGCTCGGTGTGCGAC 61.087 63.158 0.00 0.00 0.00 5.19
219 220 2.265904 TACTGCTCGGTGTGCGACT 61.266 57.895 0.00 0.00 0.00 4.18
220 221 2.196382 TACTGCTCGGTGTGCGACTC 62.196 60.000 0.00 0.00 0.00 3.36
221 222 3.274455 CTGCTCGGTGTGCGACTCT 62.274 63.158 0.00 0.00 0.00 3.24
222 223 2.807045 GCTCGGTGTGCGACTCTG 60.807 66.667 0.00 0.00 0.00 3.35
223 224 2.954611 CTCGGTGTGCGACTCTGA 59.045 61.111 0.00 0.00 0.00 3.27
224 225 1.154131 CTCGGTGTGCGACTCTGAG 60.154 63.158 2.45 2.45 38.32 3.35
225 226 1.857318 CTCGGTGTGCGACTCTGAGT 61.857 60.000 10.66 10.66 39.19 3.41
226 227 1.007271 CGGTGTGCGACTCTGAGTT 60.007 57.895 12.27 0.00 0.00 3.01
227 228 1.278172 CGGTGTGCGACTCTGAGTTG 61.278 60.000 18.80 18.80 32.67 3.16
232 233 4.467232 CGACTCTGAGTTGCCGAG 57.533 61.111 12.27 0.00 0.00 4.63
233 234 1.803519 CGACTCTGAGTTGCCGAGC 60.804 63.158 12.27 0.00 0.00 5.03
234 235 1.290324 GACTCTGAGTTGCCGAGCA 59.710 57.895 12.27 0.00 36.47 4.26
235 236 0.108424 GACTCTGAGTTGCCGAGCAT 60.108 55.000 12.27 0.00 38.76 3.79
236 237 0.390866 ACTCTGAGTTGCCGAGCATG 60.391 55.000 4.06 0.00 38.76 4.06
237 238 0.390866 CTCTGAGTTGCCGAGCATGT 60.391 55.000 0.00 0.00 38.76 3.21
238 239 0.894835 TCTGAGTTGCCGAGCATGTA 59.105 50.000 0.00 0.00 38.76 2.29
239 240 1.134995 TCTGAGTTGCCGAGCATGTAG 60.135 52.381 0.00 0.00 38.76 2.74
240 241 0.894835 TGAGTTGCCGAGCATGTAGA 59.105 50.000 0.00 0.00 38.76 2.59
241 242 1.281899 GAGTTGCCGAGCATGTAGAC 58.718 55.000 0.00 0.00 38.76 2.59
242 243 0.608130 AGTTGCCGAGCATGTAGACA 59.392 50.000 0.00 0.00 38.76 3.41
243 244 1.208052 AGTTGCCGAGCATGTAGACAT 59.792 47.619 0.00 0.00 38.76 3.06
244 245 2.009774 GTTGCCGAGCATGTAGACATT 58.990 47.619 0.00 0.00 38.76 2.71
245 246 1.655484 TGCCGAGCATGTAGACATTG 58.345 50.000 0.00 0.00 33.61 2.82
246 247 1.066215 TGCCGAGCATGTAGACATTGT 60.066 47.619 0.00 0.00 33.61 2.71
247 248 2.167487 TGCCGAGCATGTAGACATTGTA 59.833 45.455 0.00 0.00 33.61 2.41
248 249 3.194861 GCCGAGCATGTAGACATTGTAA 58.805 45.455 0.00 0.00 33.61 2.41
249 250 3.621268 GCCGAGCATGTAGACATTGTAAA 59.379 43.478 0.00 0.00 33.61 2.01
250 251 4.260375 GCCGAGCATGTAGACATTGTAAAG 60.260 45.833 0.00 0.00 33.61 1.85
251 252 5.109210 CCGAGCATGTAGACATTGTAAAGA 58.891 41.667 0.00 0.00 33.61 2.52
252 253 5.005779 CCGAGCATGTAGACATTGTAAAGAC 59.994 44.000 0.00 0.00 33.61 3.01
253 254 5.576774 CGAGCATGTAGACATTGTAAAGACA 59.423 40.000 0.00 0.00 33.61 3.41
268 269 8.990163 TTGTAAAGACAAAGAAGATTAGGGTT 57.010 30.769 0.00 0.00 42.66 4.11
269 270 8.391075 TGTAAAGACAAAGAAGATTAGGGTTG 57.609 34.615 0.00 0.00 30.68 3.77
270 271 6.901081 AAAGACAAAGAAGATTAGGGTTGG 57.099 37.500 0.00 0.00 0.00 3.77
271 272 4.336280 AGACAAAGAAGATTAGGGTTGGC 58.664 43.478 0.00 0.00 0.00 4.52
272 273 3.081804 ACAAAGAAGATTAGGGTTGGCG 58.918 45.455 0.00 0.00 0.00 5.69
273 274 3.081804 CAAAGAAGATTAGGGTTGGCGT 58.918 45.455 0.00 0.00 0.00 5.68
274 275 2.403252 AGAAGATTAGGGTTGGCGTG 57.597 50.000 0.00 0.00 0.00 5.34
275 276 1.065418 AGAAGATTAGGGTTGGCGTGG 60.065 52.381 0.00 0.00 0.00 4.94
276 277 0.034477 AAGATTAGGGTTGGCGTGGG 60.034 55.000 0.00 0.00 0.00 4.61
277 278 2.044352 ATTAGGGTTGGCGTGGGC 60.044 61.111 0.00 0.00 38.90 5.36
311 312 4.847516 GCGCCGGCCCGAAAAATC 62.848 66.667 23.46 0.00 0.00 2.17
312 313 4.187810 CGCCGGCCCGAAAAATCC 62.188 66.667 23.46 0.00 0.00 3.01
313 314 2.754254 GCCGGCCCGAAAAATCCT 60.754 61.111 18.11 0.00 0.00 3.24
314 315 2.348104 GCCGGCCCGAAAAATCCTT 61.348 57.895 18.11 0.00 0.00 3.36
315 316 1.510844 CCGGCCCGAAAAATCCTTG 59.489 57.895 3.71 0.00 0.00 3.61
316 317 1.248101 CCGGCCCGAAAAATCCTTGT 61.248 55.000 3.71 0.00 0.00 3.16
317 318 0.109319 CGGCCCGAAAAATCCTTGTG 60.109 55.000 0.00 0.00 0.00 3.33
318 319 0.966179 GGCCCGAAAAATCCTTGTGT 59.034 50.000 0.00 0.00 0.00 3.72
319 320 1.067846 GGCCCGAAAAATCCTTGTGTC 60.068 52.381 0.00 0.00 0.00 3.67
320 321 1.067846 GCCCGAAAAATCCTTGTGTCC 60.068 52.381 0.00 0.00 0.00 4.02
321 322 2.235016 CCCGAAAAATCCTTGTGTCCA 58.765 47.619 0.00 0.00 0.00 4.02
322 323 2.030274 CCCGAAAAATCCTTGTGTCCAC 60.030 50.000 0.00 0.00 0.00 4.02
323 324 2.884639 CCGAAAAATCCTTGTGTCCACT 59.115 45.455 0.00 0.00 0.00 4.00
324 325 4.069304 CCGAAAAATCCTTGTGTCCACTA 58.931 43.478 0.00 0.00 0.00 2.74
325 326 4.700213 CCGAAAAATCCTTGTGTCCACTAT 59.300 41.667 0.00 0.00 0.00 2.12
326 327 5.391950 CCGAAAAATCCTTGTGTCCACTATG 60.392 44.000 0.00 0.00 0.00 2.23
327 328 5.181245 CGAAAAATCCTTGTGTCCACTATGT 59.819 40.000 0.00 0.00 0.00 2.29
328 329 6.293955 CGAAAAATCCTTGTGTCCACTATGTT 60.294 38.462 0.00 0.00 0.00 2.71
329 330 6.575162 AAAATCCTTGTGTCCACTATGTTC 57.425 37.500 0.00 0.00 0.00 3.18
330 331 4.908601 ATCCTTGTGTCCACTATGTTCA 57.091 40.909 0.00 0.00 0.00 3.18
331 332 4.908601 TCCTTGTGTCCACTATGTTCAT 57.091 40.909 0.00 0.00 0.00 2.57
332 333 4.832248 TCCTTGTGTCCACTATGTTCATC 58.168 43.478 0.00 0.00 0.00 2.92
333 334 4.532126 TCCTTGTGTCCACTATGTTCATCT 59.468 41.667 0.00 0.00 0.00 2.90
334 335 4.872691 CCTTGTGTCCACTATGTTCATCTC 59.127 45.833 0.00 0.00 0.00 2.75
335 336 4.471904 TGTGTCCACTATGTTCATCTCC 57.528 45.455 0.00 0.00 0.00 3.71
336 337 4.096681 TGTGTCCACTATGTTCATCTCCT 58.903 43.478 0.00 0.00 0.00 3.69
337 338 4.532126 TGTGTCCACTATGTTCATCTCCTT 59.468 41.667 0.00 0.00 0.00 3.36
338 339 5.013079 TGTGTCCACTATGTTCATCTCCTTT 59.987 40.000 0.00 0.00 0.00 3.11
339 340 5.582665 GTGTCCACTATGTTCATCTCCTTTC 59.417 44.000 0.00 0.00 0.00 2.62
340 341 5.485353 TGTCCACTATGTTCATCTCCTTTCT 59.515 40.000 0.00 0.00 0.00 2.52
341 342 6.013379 TGTCCACTATGTTCATCTCCTTTCTT 60.013 38.462 0.00 0.00 0.00 2.52
342 343 6.536941 GTCCACTATGTTCATCTCCTTTCTTC 59.463 42.308 0.00 0.00 0.00 2.87
343 344 6.441924 TCCACTATGTTCATCTCCTTTCTTCT 59.558 38.462 0.00 0.00 0.00 2.85
344 345 7.038017 TCCACTATGTTCATCTCCTTTCTTCTT 60.038 37.037 0.00 0.00 0.00 2.52
345 346 7.609532 CCACTATGTTCATCTCCTTTCTTCTTT 59.390 37.037 0.00 0.00 0.00 2.52
346 347 8.663911 CACTATGTTCATCTCCTTTCTTCTTTC 58.336 37.037 0.00 0.00 0.00 2.62
347 348 8.601546 ACTATGTTCATCTCCTTTCTTCTTTCT 58.398 33.333 0.00 0.00 0.00 2.52
348 349 9.447157 CTATGTTCATCTCCTTTCTTCTTTCTT 57.553 33.333 0.00 0.00 0.00 2.52
349 350 7.502120 TGTTCATCTCCTTTCTTCTTTCTTG 57.498 36.000 0.00 0.00 0.00 3.02
350 351 7.056635 TGTTCATCTCCTTTCTTCTTTCTTGT 58.943 34.615 0.00 0.00 0.00 3.16
351 352 7.557719 TGTTCATCTCCTTTCTTCTTTCTTGTT 59.442 33.333 0.00 0.00 0.00 2.83
352 353 7.736447 TCATCTCCTTTCTTCTTTCTTGTTC 57.264 36.000 0.00 0.00 0.00 3.18
353 354 6.425114 TCATCTCCTTTCTTCTTTCTTGTTCG 59.575 38.462 0.00 0.00 0.00 3.95
354 355 5.914033 TCTCCTTTCTTCTTTCTTGTTCGA 58.086 37.500 0.00 0.00 0.00 3.71
355 356 5.986135 TCTCCTTTCTTCTTTCTTGTTCGAG 59.014 40.000 0.00 0.00 0.00 4.04
356 357 4.511826 TCCTTTCTTCTTTCTTGTTCGAGC 59.488 41.667 0.00 0.00 0.00 5.03
357 358 4.449779 CTTTCTTCTTTCTTGTTCGAGCG 58.550 43.478 0.00 0.00 0.00 5.03
358 359 3.364889 TCTTCTTTCTTGTTCGAGCGA 57.635 42.857 0.00 0.00 0.00 4.93
359 360 3.309388 TCTTCTTTCTTGTTCGAGCGAG 58.691 45.455 10.12 10.12 0.00 5.03
360 361 2.795175 TCTTTCTTGTTCGAGCGAGT 57.205 45.000 15.30 0.00 0.00 4.18
361 362 2.394708 TCTTTCTTGTTCGAGCGAGTG 58.605 47.619 15.30 8.07 0.00 3.51
362 363 2.034179 TCTTTCTTGTTCGAGCGAGTGA 59.966 45.455 15.30 9.92 0.00 3.41
363 364 2.051879 TTCTTGTTCGAGCGAGTGAG 57.948 50.000 15.30 0.00 0.00 3.51
364 365 0.387367 TCTTGTTCGAGCGAGTGAGC 60.387 55.000 15.30 0.00 37.41 4.26
373 374 2.476772 GCGAGTGAGCTGAGAGAGA 58.523 57.895 0.00 0.00 0.00 3.10
374 375 0.378257 GCGAGTGAGCTGAGAGAGAG 59.622 60.000 0.00 0.00 0.00 3.20
375 376 2.011548 GCGAGTGAGCTGAGAGAGAGA 61.012 57.143 0.00 0.00 0.00 3.10
376 377 1.935873 CGAGTGAGCTGAGAGAGAGAG 59.064 57.143 0.00 0.00 0.00 3.20
377 378 2.418609 CGAGTGAGCTGAGAGAGAGAGA 60.419 54.545 0.00 0.00 0.00 3.10
378 379 3.201290 GAGTGAGCTGAGAGAGAGAGAG 58.799 54.545 0.00 0.00 0.00 3.20
379 380 1.672881 GTGAGCTGAGAGAGAGAGAGC 59.327 57.143 0.00 0.00 0.00 4.09
380 381 0.940126 GAGCTGAGAGAGAGAGAGCG 59.060 60.000 0.00 0.00 34.75 5.03
381 382 1.097547 AGCTGAGAGAGAGAGAGCGC 61.098 60.000 0.00 0.00 34.75 5.92
382 383 1.375853 GCTGAGAGAGAGAGAGCGCA 61.376 60.000 11.47 0.00 0.00 6.09
383 384 0.659427 CTGAGAGAGAGAGAGCGCAG 59.341 60.000 11.47 0.00 0.00 5.18
396 397 4.479993 CGCAGCTAGGCCAGGCTT 62.480 66.667 17.94 6.28 36.59 4.35
397 398 2.827642 GCAGCTAGGCCAGGCTTG 60.828 66.667 17.94 14.33 36.59 4.01
439 440 5.254339 AGCTGCCAATGCTTAATTACTTC 57.746 39.130 0.00 0.00 37.52 3.01
447 448 7.910683 GCCAATGCTTAATTACTTCAGTAAGTC 59.089 37.037 3.04 0.00 39.57 3.01
463 469 2.842462 TCACTGGCGGGAGTGTGT 60.842 61.111 0.00 0.00 43.38 3.72
490 496 1.578583 AACAGCGCGTCTAACTTGTT 58.421 45.000 8.43 1.02 0.00 2.83
492 498 1.937899 ACAGCGCGTCTAACTTGTTTT 59.062 42.857 8.43 0.00 0.00 2.43
499 505 5.363517 CGCGTCTAACTTGTTTTGAACTAG 58.636 41.667 0.00 0.00 39.62 2.57
501 507 5.050295 GCGTCTAACTTGTTTTGAACTAGCT 60.050 40.000 0.00 0.00 37.70 3.32
503 509 6.421202 CGTCTAACTTGTTTTGAACTAGCTCT 59.579 38.462 0.00 0.00 37.70 4.09
504 510 7.567771 CGTCTAACTTGTTTTGAACTAGCTCTG 60.568 40.741 0.00 0.00 37.70 3.35
508 514 3.390135 TGTTTTGAACTAGCTCTGGTCG 58.610 45.455 0.00 0.00 0.00 4.79
515 521 1.231221 CTAGCTCTGGTCGCTACGAT 58.769 55.000 0.00 0.00 38.42 3.73
517 523 0.464735 AGCTCTGGTCGCTACGATCT 60.465 55.000 1.62 0.00 37.91 2.75
539 545 3.511540 TGGAAGAGCGAGAGAATGAGAAA 59.488 43.478 0.00 0.00 0.00 2.52
572 578 6.998802 AGGATCTATGTACTAGCATCCAAAC 58.001 40.000 18.86 0.00 37.01 2.93
590 596 1.807165 CCATGAGCGGTCTGTGTCG 60.807 63.158 16.64 0.17 0.00 4.35
615 621 4.201920 GCAATGAACTCGTAATTTCCCTCC 60.202 45.833 0.00 0.00 0.00 4.30
700 706 5.411781 GCTGTTGCAGTAGTGACTATTACT 58.588 41.667 0.42 0.00 39.41 2.24
701 707 6.561614 GCTGTTGCAGTAGTGACTATTACTA 58.438 40.000 0.42 0.00 39.41 1.82
702 708 6.472808 GCTGTTGCAGTAGTGACTATTACTAC 59.527 42.308 0.42 7.10 46.82 2.73
745 751 2.583441 CCAAGACTCCGGCAGGTCA 61.583 63.158 18.94 0.00 39.05 4.02
747 753 0.036010 CAAGACTCCGGCAGGTCATT 60.036 55.000 18.94 10.58 39.05 2.57
855 863 1.376037 CCCGAGTCCAAGACCTTGC 60.376 63.158 4.31 0.00 39.16 4.01
877 895 2.758089 GCAAGGCTGATGACGCTGG 61.758 63.158 0.00 0.00 0.00 4.85
916 934 3.691342 CGCCGTCACTCCTCCCAA 61.691 66.667 0.00 0.00 0.00 4.12
952 974 4.194720 AGCTCGATCGTCGCCCAC 62.195 66.667 21.97 5.07 40.21 4.61
998 1060 2.009774 CGCTCGATCCCTGTTTTGATT 58.990 47.619 0.00 0.00 0.00 2.57
1005 1067 3.173953 TCCCTGTTTTGATTGATGGCT 57.826 42.857 0.00 0.00 0.00 4.75
1046 1108 2.221981 GCAGTCGATCGAATTGGGATTC 59.778 50.000 21.31 3.79 38.62 2.52
1104 1171 6.242829 GTTTTGCTGATCTTGTTTTGTTGTG 58.757 36.000 0.00 0.00 0.00 3.33
1130 1197 0.523072 CTGCGGAATTCAGGTTGTGG 59.477 55.000 7.93 0.00 0.00 4.17
1207 1274 1.865865 CGCTGCACGGTAATAATCCT 58.134 50.000 0.00 0.00 38.44 3.24
1241 3373 1.725706 CTTCTTGCTCTGCTTCGTCTG 59.274 52.381 0.00 0.00 0.00 3.51
1247 3379 1.404717 GCTCTGCTTCGTCTGGATCAA 60.405 52.381 0.00 0.00 0.00 2.57
1254 3386 0.976073 TCGTCTGGATCAAGGGGGAC 60.976 60.000 0.00 0.00 0.00 4.46
1255 3387 1.264749 CGTCTGGATCAAGGGGGACA 61.265 60.000 0.00 0.00 0.00 4.02
1256 3388 0.253327 GTCTGGATCAAGGGGGACAC 59.747 60.000 0.00 0.00 0.00 3.67
1257 3389 0.119155 TCTGGATCAAGGGGGACACT 59.881 55.000 0.00 0.00 0.00 3.55
1287 3458 2.745152 CGACAACAACCCTCACTTCCTT 60.745 50.000 0.00 0.00 0.00 3.36
1339 3510 0.243907 ACCAGAAGATGACGGTCGTG 59.756 55.000 7.75 0.00 0.00 4.35
1495 3690 1.678635 CCCGACGTACTGGTACCCA 60.679 63.158 10.07 0.00 32.61 4.51
1573 3777 0.170339 TCATCTGTTGATCGACGCGT 59.830 50.000 13.85 13.85 0.00 6.01
1594 3803 2.683933 GCCGACTCCCTCCCTTCA 60.684 66.667 0.00 0.00 0.00 3.02
1595 3804 3.020237 GCCGACTCCCTCCCTTCAC 62.020 68.421 0.00 0.00 0.00 3.18
1598 3807 1.411787 CCGACTCCCTCCCTTCACTAT 60.412 57.143 0.00 0.00 0.00 2.12
1606 3816 6.001449 TCCCTCCCTTCACTATATTTTGTG 57.999 41.667 0.00 0.00 35.68 3.33
1655 3874 1.226974 CTACCTGCACCGGTGATCG 60.227 63.158 38.30 23.77 37.93 3.69
1699 3923 2.867368 CGTGTAAGGTGTGTAAGTTGCA 59.133 45.455 0.00 0.00 0.00 4.08
1803 4035 6.136071 CAGTATGTTGTTGAGAAAGGAAACG 58.864 40.000 0.00 0.00 0.00 3.60
1816 4048 3.626028 AGGAAACGCATCAAGTTGTTC 57.374 42.857 2.11 0.00 31.43 3.18
1838 4109 5.505780 TCAAAGAAAAGTGTGGAGAAGGAA 58.494 37.500 0.00 0.00 0.00 3.36
1849 4120 5.814705 GTGTGGAGAAGGAACAGATAGAATG 59.185 44.000 0.00 0.00 0.00 2.67
1850 4121 5.485353 TGTGGAGAAGGAACAGATAGAATGT 59.515 40.000 0.00 0.00 0.00 2.71
1859 4130 5.064452 GGAACAGATAGAATGTCTGCAGTTG 59.936 44.000 14.67 0.00 45.42 3.16
1860 4131 5.157940 ACAGATAGAATGTCTGCAGTTGT 57.842 39.130 14.67 1.84 45.42 3.32
1864 4135 6.800408 CAGATAGAATGTCTGCAGTTGTTTTG 59.200 38.462 14.67 0.00 36.95 2.44
1870 4141 3.374988 TGTCTGCAGTTGTTTTGTCAGAG 59.625 43.478 14.67 0.00 33.00 3.35
1874 4148 4.985413 TGCAGTTGTTTTGTCAGAGAAAG 58.015 39.130 0.00 0.00 0.00 2.62
1883 4157 6.183360 TGTTTTGTCAGAGAAAGTTGATGGAC 60.183 38.462 0.00 0.00 0.00 4.02
1886 4160 3.434984 GTCAGAGAAAGTTGATGGACTGC 59.565 47.826 0.00 0.00 0.00 4.40
1889 4163 4.458295 CAGAGAAAGTTGATGGACTGCATT 59.542 41.667 0.00 0.00 0.00 3.56
1892 4166 6.041296 AGAGAAAGTTGATGGACTGCATTTTT 59.959 34.615 0.00 0.00 0.00 1.94
1956 4234 3.341823 GCATCCAGTCTTCAGTTGACAT 58.658 45.455 0.00 0.00 36.94 3.06
2010 4292 4.357918 AACTGAGCACACTTTAGATGGT 57.642 40.909 0.00 0.00 0.00 3.55
2011 4293 4.357918 ACTGAGCACACTTTAGATGGTT 57.642 40.909 0.00 0.00 0.00 3.67
2012 4294 5.483685 ACTGAGCACACTTTAGATGGTTA 57.516 39.130 0.00 0.00 0.00 2.85
2015 4297 7.796054 ACTGAGCACACTTTAGATGGTTATAT 58.204 34.615 0.00 0.00 0.00 0.86
2026 4308 9.736023 CTTTAGATGGTTATATGTTCCTTTTGC 57.264 33.333 0.00 0.00 0.00 3.68
2028 4310 4.974368 TGGTTATATGTTCCTTTTGCCG 57.026 40.909 0.00 0.00 0.00 5.69
2042 4324 3.056328 GCCGAAACCAGTCTGCCC 61.056 66.667 0.00 0.00 0.00 5.36
2058 4340 1.283613 TGCCCGGGTTCAAGTTATGAT 59.716 47.619 24.63 0.00 38.03 2.45
2059 4341 2.291282 TGCCCGGGTTCAAGTTATGATT 60.291 45.455 24.63 0.00 38.03 2.57
2068 4350 5.144359 GTTCAAGTTATGATTTTGACGCGT 58.856 37.500 13.85 13.85 38.03 6.01
2127 4415 3.965292 TCTACTCTTTCAGCGGTATCG 57.035 47.619 0.00 0.00 39.81 2.92
2136 4424 2.180017 GCGGTATCGTGTGTCCGT 59.820 61.111 0.00 0.00 44.07 4.69
2142 4430 0.109643 TATCGTGTGTCCGTCAACCG 60.110 55.000 0.00 0.00 0.00 4.44
2144 4432 3.698463 GTGTGTCCGTCAACCGCG 61.698 66.667 0.00 0.00 34.38 6.46
2157 4445 0.241749 AACCGCGAGACGTGTATGAA 59.758 50.000 8.23 0.00 41.42 2.57
2158 4446 0.241749 ACCGCGAGACGTGTATGAAA 59.758 50.000 8.23 0.00 41.42 2.69
2159 4447 1.135199 ACCGCGAGACGTGTATGAAAT 60.135 47.619 8.23 0.00 41.42 2.17
2183 4471 1.466360 GCATTAAGCAAGTCAGGCACG 60.466 52.381 0.00 0.00 44.79 5.34
2199 4487 5.105351 TCAGGCACGAAGAGATGAGAAATTA 60.105 40.000 0.00 0.00 0.00 1.40
2215 4503 5.176592 AGAAATTAAGGCGGACAACTAGAC 58.823 41.667 0.00 0.00 0.00 2.59
2380 4675 8.887036 ATTACTCATGTATGCTTTCATTCGTA 57.113 30.769 0.00 0.00 34.22 3.43
2381 4676 8.710835 TTACTCATGTATGCTTTCATTCGTAA 57.289 30.769 0.00 0.00 34.22 3.18
2424 4725 7.862741 TTACGACCTAATACATTGCTAATCG 57.137 36.000 0.00 0.00 0.00 3.34
2426 4727 6.278363 ACGACCTAATACATTGCTAATCGTT 58.722 36.000 0.00 0.00 35.73 3.85
2448 4749 6.742718 CGTTCATCTCACAAAATACACATTCC 59.257 38.462 0.00 0.00 0.00 3.01
2449 4750 6.421377 TCATCTCACAAAATACACATTCCG 57.579 37.500 0.00 0.00 0.00 4.30
2483 4816 4.081030 CGCTGCTCCAACTGCACG 62.081 66.667 0.00 0.00 36.37 5.34
2497 4830 5.460646 CAACTGCACGGAGTATTCATTTTT 58.539 37.500 0.00 0.00 41.61 1.94
2553 4887 2.831742 CCTCCAAGGCATGCGCAT 60.832 61.111 19.28 19.28 41.24 4.73
2554 4888 2.420568 CCTCCAAGGCATGCGCATT 61.421 57.895 22.81 3.63 44.44 3.56
2555 4889 1.514087 CTCCAAGGCATGCGCATTT 59.486 52.632 22.81 10.39 39.60 2.32
2556 4890 0.108520 CTCCAAGGCATGCGCATTTT 60.109 50.000 22.81 12.76 39.60 1.82
2557 4891 1.134753 CTCCAAGGCATGCGCATTTTA 59.865 47.619 22.81 2.74 39.60 1.52
2558 4892 1.755959 TCCAAGGCATGCGCATTTTAT 59.244 42.857 22.81 4.81 39.60 1.40
2559 4893 2.129607 CCAAGGCATGCGCATTTTATC 58.870 47.619 22.81 8.52 39.60 1.75
2560 4894 2.129607 CAAGGCATGCGCATTTTATCC 58.870 47.619 22.81 15.99 39.60 2.59
2561 4895 1.401761 AGGCATGCGCATTTTATCCA 58.598 45.000 22.81 0.00 41.24 3.41
2562 4896 1.965643 AGGCATGCGCATTTTATCCAT 59.034 42.857 22.81 0.00 41.24 3.41
2563 4897 2.366266 AGGCATGCGCATTTTATCCATT 59.634 40.909 22.81 0.00 41.24 3.16
2564 4898 2.733026 GGCATGCGCATTTTATCCATTC 59.267 45.455 22.81 0.00 41.24 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.733026 GCTAAGAAACTAACCGAACGCA 59.267 45.455 0.00 0.00 0.00 5.24
3 4 4.264849 GCTAGCTAAGAAACTAACCGAACG 59.735 45.833 7.70 0.00 0.00 3.95
4 5 5.409211 AGCTAGCTAAGAAACTAACCGAAC 58.591 41.667 17.69 0.00 0.00 3.95
5 6 5.656213 AGCTAGCTAAGAAACTAACCGAA 57.344 39.130 17.69 0.00 0.00 4.30
6 7 5.649395 TGTAGCTAGCTAAGAAACTAACCGA 59.351 40.000 25.74 0.00 0.00 4.69
7 8 5.888105 TGTAGCTAGCTAAGAAACTAACCG 58.112 41.667 25.74 0.00 0.00 4.44
9 10 6.074782 CGCATGTAGCTAGCTAAGAAACTAAC 60.075 42.308 25.74 13.20 42.61 2.34
10 11 5.977725 CGCATGTAGCTAGCTAAGAAACTAA 59.022 40.000 25.74 0.00 42.61 2.24
11 12 5.067413 ACGCATGTAGCTAGCTAAGAAACTA 59.933 40.000 25.74 7.46 42.61 2.24
12 13 4.142138 ACGCATGTAGCTAGCTAAGAAACT 60.142 41.667 25.74 5.32 42.61 2.66
13 14 4.026475 CACGCATGTAGCTAGCTAAGAAAC 60.026 45.833 25.74 16.09 42.61 2.78
14 15 4.112634 CACGCATGTAGCTAGCTAAGAAA 58.887 43.478 25.74 12.29 42.61 2.52
15 16 3.490933 CCACGCATGTAGCTAGCTAAGAA 60.491 47.826 25.74 14.70 42.61 2.52
16 17 2.034685 CCACGCATGTAGCTAGCTAAGA 59.965 50.000 25.74 15.62 42.61 2.10
17 18 2.034685 TCCACGCATGTAGCTAGCTAAG 59.965 50.000 25.74 18.42 42.61 2.18
18 19 2.028876 TCCACGCATGTAGCTAGCTAA 58.971 47.619 25.74 15.89 42.61 3.09
19 20 1.609072 CTCCACGCATGTAGCTAGCTA 59.391 52.381 20.67 20.67 42.61 3.32
20 21 0.387202 CTCCACGCATGTAGCTAGCT 59.613 55.000 23.12 23.12 42.61 3.32
21 22 0.385751 TCTCCACGCATGTAGCTAGC 59.614 55.000 6.62 6.62 42.61 3.42
22 23 1.601663 GCTCTCCACGCATGTAGCTAG 60.602 57.143 0.00 0.00 42.61 3.42
23 24 0.385751 GCTCTCCACGCATGTAGCTA 59.614 55.000 0.00 0.00 42.61 3.32
24 25 1.142748 GCTCTCCACGCATGTAGCT 59.857 57.895 0.00 0.00 42.61 3.32
25 26 1.142748 AGCTCTCCACGCATGTAGC 59.857 57.895 0.00 0.00 40.87 3.58
26 27 1.150567 GCAGCTCTCCACGCATGTAG 61.151 60.000 0.00 0.00 0.00 2.74
27 28 1.153568 GCAGCTCTCCACGCATGTA 60.154 57.895 0.00 0.00 0.00 2.29
28 29 2.435586 GCAGCTCTCCACGCATGT 60.436 61.111 0.00 0.00 0.00 3.21
29 30 2.435410 TGCAGCTCTCCACGCATG 60.435 61.111 0.00 0.00 0.00 4.06
30 31 2.435586 GTGCAGCTCTCCACGCAT 60.436 61.111 0.00 0.00 36.64 4.73
34 35 2.492449 TAGTGCGTGCAGCTCTCCAC 62.492 60.000 13.48 0.69 45.54 4.02
35 36 2.218037 CTAGTGCGTGCAGCTCTCCA 62.218 60.000 13.48 1.29 45.54 3.86
36 37 1.518133 CTAGTGCGTGCAGCTCTCC 60.518 63.158 13.48 0.00 45.54 3.71
37 38 1.518133 CCTAGTGCGTGCAGCTCTC 60.518 63.158 13.48 0.00 45.54 3.20
45 46 4.388499 AACGGCCCCTAGTGCGTG 62.388 66.667 0.00 0.00 0.00 5.34
46 47 4.388499 CAACGGCCCCTAGTGCGT 62.388 66.667 0.00 0.00 0.00 5.24
48 49 2.925162 CTAGCAACGGCCCCTAGTGC 62.925 65.000 0.00 0.00 42.56 4.40
49 50 1.144057 CTAGCAACGGCCCCTAGTG 59.856 63.158 0.00 0.00 42.56 2.74
50 51 2.732619 GCTAGCAACGGCCCCTAGT 61.733 63.158 10.63 0.00 42.56 2.57
51 52 2.109181 GCTAGCAACGGCCCCTAG 59.891 66.667 10.63 3.63 42.56 3.02
52 53 2.365105 AGCTAGCAACGGCCCCTA 60.365 61.111 18.83 0.00 42.56 3.53
53 54 4.101448 CAGCTAGCAACGGCCCCT 62.101 66.667 18.83 0.00 42.56 4.79
54 55 3.920093 AACAGCTAGCAACGGCCCC 62.920 63.158 18.83 0.00 42.56 5.80
55 56 2.359975 AACAGCTAGCAACGGCCC 60.360 61.111 18.83 0.00 42.56 5.80
56 57 2.690778 CCAACAGCTAGCAACGGCC 61.691 63.158 18.83 0.00 42.56 6.13
57 58 1.639298 CTCCAACAGCTAGCAACGGC 61.639 60.000 18.83 0.00 41.61 5.68
58 59 1.021390 CCTCCAACAGCTAGCAACGG 61.021 60.000 18.83 11.56 0.00 4.44
59 60 1.639298 GCCTCCAACAGCTAGCAACG 61.639 60.000 18.83 7.40 0.00 4.10
60 61 0.606401 TGCCTCCAACAGCTAGCAAC 60.606 55.000 18.83 0.00 0.00 4.17
61 62 0.321919 CTGCCTCCAACAGCTAGCAA 60.322 55.000 18.83 0.00 0.00 3.91
62 63 1.297689 CTGCCTCCAACAGCTAGCA 59.702 57.895 18.83 0.00 0.00 3.49
63 64 4.215349 CTGCCTCCAACAGCTAGC 57.785 61.111 6.62 6.62 0.00 3.42
74 75 4.570663 ATACGACGCGGCTGCCTC 62.571 66.667 17.92 8.04 38.08 4.70
75 76 4.873129 CATACGACGCGGCTGCCT 62.873 66.667 17.92 0.00 38.08 4.75
78 79 1.966493 AAAAGCATACGACGCGGCTG 61.966 55.000 11.76 6.28 36.58 4.85
79 80 1.740296 AAAAGCATACGACGCGGCT 60.740 52.632 11.76 4.63 38.45 5.52
80 81 1.580132 CAAAAGCATACGACGCGGC 60.580 57.895 12.47 6.41 0.00 6.53
81 82 0.518355 CACAAAAGCATACGACGCGG 60.518 55.000 12.47 0.00 0.00 6.46
82 83 1.120147 GCACAAAAGCATACGACGCG 61.120 55.000 3.53 3.53 0.00 6.01
83 84 1.120147 CGCACAAAAGCATACGACGC 61.120 55.000 0.00 0.00 0.00 5.19
84 85 1.120147 GCGCACAAAAGCATACGACG 61.120 55.000 0.30 0.00 0.00 5.12
85 86 1.120147 CGCGCACAAAAGCATACGAC 61.120 55.000 8.75 0.00 0.00 4.34
86 87 1.131623 CGCGCACAAAAGCATACGA 59.868 52.632 8.75 0.00 0.00 3.43
87 88 1.120147 GACGCGCACAAAAGCATACG 61.120 55.000 5.73 0.00 0.00 3.06
88 89 0.110419 TGACGCGCACAAAAGCATAC 60.110 50.000 5.73 0.00 0.00 2.39
89 90 0.801872 ATGACGCGCACAAAAGCATA 59.198 45.000 5.73 0.00 0.00 3.14
90 91 0.730155 CATGACGCGCACAAAAGCAT 60.730 50.000 5.73 0.00 0.00 3.79
91 92 1.370293 CATGACGCGCACAAAAGCA 60.370 52.632 5.73 0.00 0.00 3.91
92 93 2.709999 GCATGACGCGCACAAAAGC 61.710 57.895 5.73 9.48 0.00 3.51
93 94 3.440267 GCATGACGCGCACAAAAG 58.560 55.556 5.73 3.23 0.00 2.27
117 118 4.284860 TCGATCCGCATGCTCCGG 62.285 66.667 17.13 10.05 46.88 5.14
118 119 2.732468 CTCGATCCGCATGCTCCG 60.732 66.667 17.13 13.01 0.00 4.63
119 120 2.356793 CCTCGATCCGCATGCTCC 60.357 66.667 17.13 0.86 0.00 4.70
120 121 1.663074 GTCCTCGATCCGCATGCTC 60.663 63.158 17.13 5.70 0.00 4.26
121 122 2.419198 GTCCTCGATCCGCATGCT 59.581 61.111 17.13 0.00 0.00 3.79
122 123 3.032609 CGTCCTCGATCCGCATGC 61.033 66.667 7.91 7.91 39.71 4.06
123 124 1.371022 CTCGTCCTCGATCCGCATG 60.371 63.158 0.00 0.00 45.21 4.06
124 125 3.034878 CTCGTCCTCGATCCGCAT 58.965 61.111 0.00 0.00 45.21 4.73
125 126 3.889044 GCTCGTCCTCGATCCGCA 61.889 66.667 0.00 0.00 45.21 5.69
126 127 4.965858 CGCTCGTCCTCGATCCGC 62.966 72.222 0.00 0.00 45.21 5.54
127 128 3.230005 CTCGCTCGTCCTCGATCCG 62.230 68.421 0.00 0.00 45.21 4.18
128 129 2.634777 CTCGCTCGTCCTCGATCC 59.365 66.667 0.00 0.00 45.21 3.36
129 130 2.051703 GCTCGCTCGTCCTCGATC 60.052 66.667 0.00 0.00 45.21 3.69
130 131 2.515057 AGCTCGCTCGTCCTCGAT 60.515 61.111 0.00 0.00 45.21 3.59
131 132 3.500642 CAGCTCGCTCGTCCTCGA 61.501 66.667 0.00 0.00 44.12 4.04
132 133 4.544689 CCAGCTCGCTCGTCCTCG 62.545 72.222 0.00 0.00 38.55 4.63
133 134 4.200283 CCCAGCTCGCTCGTCCTC 62.200 72.222 0.00 0.00 0.00 3.71
158 159 0.435388 TAAACACATGCGCACGTACG 59.565 50.000 14.90 15.01 0.00 3.67
159 160 1.458064 ACTAAACACATGCGCACGTAC 59.542 47.619 14.90 0.00 0.00 3.67
160 161 1.785768 ACTAAACACATGCGCACGTA 58.214 45.000 14.90 0.00 0.00 3.57
161 162 0.941542 AACTAAACACATGCGCACGT 59.058 45.000 14.90 8.29 0.00 4.49
162 163 1.194547 AGAACTAAACACATGCGCACG 59.805 47.619 14.90 7.29 0.00 5.34
163 164 2.969443 AGAACTAAACACATGCGCAC 57.031 45.000 14.90 0.00 0.00 5.34
164 165 2.616376 ACAAGAACTAAACACATGCGCA 59.384 40.909 14.96 14.96 0.00 6.09
165 166 3.268013 ACAAGAACTAAACACATGCGC 57.732 42.857 0.00 0.00 0.00 6.09
166 167 9.210426 GATTTATACAAGAACTAAACACATGCG 57.790 33.333 0.00 0.00 0.00 4.73
167 168 9.503427 GGATTTATACAAGAACTAAACACATGC 57.497 33.333 0.00 0.00 0.00 4.06
169 170 9.185680 GGGGATTTATACAAGAACTAAACACAT 57.814 33.333 0.00 0.00 0.00 3.21
170 171 8.387813 AGGGGATTTATACAAGAACTAAACACA 58.612 33.333 0.00 0.00 0.00 3.72
171 172 8.803397 AGGGGATTTATACAAGAACTAAACAC 57.197 34.615 0.00 0.00 0.00 3.32
172 173 7.767198 CGAGGGGATTTATACAAGAACTAAACA 59.233 37.037 0.00 0.00 0.00 2.83
173 174 7.767659 ACGAGGGGATTTATACAAGAACTAAAC 59.232 37.037 0.00 0.00 0.00 2.01
174 175 7.767198 CACGAGGGGATTTATACAAGAACTAAA 59.233 37.037 0.00 0.00 0.00 1.85
175 176 7.093201 ACACGAGGGGATTTATACAAGAACTAA 60.093 37.037 0.00 0.00 0.00 2.24
176 177 6.381994 ACACGAGGGGATTTATACAAGAACTA 59.618 38.462 0.00 0.00 0.00 2.24
177 178 5.189145 ACACGAGGGGATTTATACAAGAACT 59.811 40.000 0.00 0.00 0.00 3.01
178 179 5.425630 ACACGAGGGGATTTATACAAGAAC 58.574 41.667 0.00 0.00 0.00 3.01
179 180 5.687166 ACACGAGGGGATTTATACAAGAA 57.313 39.130 0.00 0.00 0.00 2.52
180 181 5.895534 AGTACACGAGGGGATTTATACAAGA 59.104 40.000 0.00 0.00 0.00 3.02
181 182 5.983720 CAGTACACGAGGGGATTTATACAAG 59.016 44.000 0.00 0.00 0.00 3.16
182 183 5.682990 GCAGTACACGAGGGGATTTATACAA 60.683 44.000 0.00 0.00 0.00 2.41
183 184 4.202182 GCAGTACACGAGGGGATTTATACA 60.202 45.833 0.00 0.00 0.00 2.29
184 185 4.038883 AGCAGTACACGAGGGGATTTATAC 59.961 45.833 0.00 0.00 0.00 1.47
185 186 4.220724 AGCAGTACACGAGGGGATTTATA 58.779 43.478 0.00 0.00 0.00 0.98
186 187 3.039011 AGCAGTACACGAGGGGATTTAT 58.961 45.455 0.00 0.00 0.00 1.40
187 188 2.429610 GAGCAGTACACGAGGGGATTTA 59.570 50.000 0.00 0.00 0.00 1.40
188 189 1.207329 GAGCAGTACACGAGGGGATTT 59.793 52.381 0.00 0.00 0.00 2.17
189 190 0.824759 GAGCAGTACACGAGGGGATT 59.175 55.000 0.00 0.00 0.00 3.01
190 191 1.384989 CGAGCAGTACACGAGGGGAT 61.385 60.000 0.00 0.00 33.84 3.85
191 192 2.044555 CGAGCAGTACACGAGGGGA 61.045 63.158 0.00 0.00 33.84 4.81
192 193 2.490217 CGAGCAGTACACGAGGGG 59.510 66.667 0.00 0.00 33.84 4.79
193 194 2.341101 ACCGAGCAGTACACGAGGG 61.341 63.158 0.00 0.00 33.84 4.30
194 195 1.154016 CACCGAGCAGTACACGAGG 60.154 63.158 0.00 0.00 33.84 4.63
195 196 0.729478 CACACCGAGCAGTACACGAG 60.729 60.000 0.00 0.00 33.84 4.18
196 197 1.284715 CACACCGAGCAGTACACGA 59.715 57.895 0.00 0.00 33.84 4.35
197 198 2.372690 GCACACCGAGCAGTACACG 61.373 63.158 0.00 0.00 0.00 4.49
198 199 2.372690 CGCACACCGAGCAGTACAC 61.373 63.158 0.00 0.00 40.02 2.90
199 200 2.049526 CGCACACCGAGCAGTACA 60.050 61.111 0.00 0.00 40.02 2.90
200 201 2.257371 TCGCACACCGAGCAGTAC 59.743 61.111 0.00 0.00 41.89 2.73
207 208 1.452953 AACTCAGAGTCGCACACCGA 61.453 55.000 2.72 0.00 45.15 4.69
208 209 1.007271 AACTCAGAGTCGCACACCG 60.007 57.895 2.72 0.00 38.61 4.94
209 210 1.560860 GCAACTCAGAGTCGCACACC 61.561 60.000 8.74 0.00 0.00 4.16
210 211 1.560860 GGCAACTCAGAGTCGCACAC 61.561 60.000 15.50 0.00 0.00 3.82
211 212 1.300931 GGCAACTCAGAGTCGCACA 60.301 57.895 15.50 0.00 0.00 4.57
212 213 2.375766 CGGCAACTCAGAGTCGCAC 61.376 63.158 15.50 4.14 0.00 5.34
213 214 2.049156 CGGCAACTCAGAGTCGCA 60.049 61.111 15.50 0.00 0.00 5.10
214 215 1.803519 CTCGGCAACTCAGAGTCGC 60.804 63.158 4.75 4.75 33.17 5.19
215 216 1.803519 GCTCGGCAACTCAGAGTCG 60.804 63.158 2.72 3.58 38.93 4.18
216 217 0.108424 ATGCTCGGCAACTCAGAGTC 60.108 55.000 2.72 0.00 43.62 3.36
217 218 0.390866 CATGCTCGGCAACTCAGAGT 60.391 55.000 0.00 0.00 43.62 3.24
218 219 0.390866 ACATGCTCGGCAACTCAGAG 60.391 55.000 2.68 0.00 43.62 3.35
219 220 0.894835 TACATGCTCGGCAACTCAGA 59.105 50.000 2.68 0.00 43.62 3.27
220 221 1.134995 TCTACATGCTCGGCAACTCAG 60.135 52.381 2.68 0.00 43.62 3.35
221 222 0.894835 TCTACATGCTCGGCAACTCA 59.105 50.000 2.68 0.00 43.62 3.41
222 223 1.281899 GTCTACATGCTCGGCAACTC 58.718 55.000 2.68 0.00 43.62 3.01
223 224 0.608130 TGTCTACATGCTCGGCAACT 59.392 50.000 2.68 0.00 43.62 3.16
224 225 1.656652 ATGTCTACATGCTCGGCAAC 58.343 50.000 2.68 0.00 43.62 4.17
225 226 2.009051 CAATGTCTACATGCTCGGCAA 58.991 47.619 2.68 0.00 43.62 4.52
226 227 1.066215 ACAATGTCTACATGCTCGGCA 60.066 47.619 1.01 1.01 44.86 5.69
227 228 1.656652 ACAATGTCTACATGCTCGGC 58.343 50.000 0.00 0.00 36.56 5.54
228 229 5.005779 GTCTTTACAATGTCTACATGCTCGG 59.994 44.000 0.00 0.00 36.56 4.63
229 230 5.576774 TGTCTTTACAATGTCTACATGCTCG 59.423 40.000 0.00 0.00 36.56 5.03
230 231 6.968131 TGTCTTTACAATGTCTACATGCTC 57.032 37.500 0.00 0.00 36.56 4.26
231 232 7.661437 TCTTTGTCTTTACAATGTCTACATGCT 59.339 33.333 0.00 0.00 44.85 3.79
232 233 7.806690 TCTTTGTCTTTACAATGTCTACATGC 58.193 34.615 0.00 0.00 44.85 4.06
233 234 9.817365 CTTCTTTGTCTTTACAATGTCTACATG 57.183 33.333 0.00 0.00 44.85 3.21
234 235 9.778741 TCTTCTTTGTCTTTACAATGTCTACAT 57.221 29.630 0.00 0.00 44.85 2.29
235 236 9.778741 ATCTTCTTTGTCTTTACAATGTCTACA 57.221 29.630 0.00 0.00 44.85 2.74
240 241 9.014297 CCCTAATCTTCTTTGTCTTTACAATGT 57.986 33.333 0.00 0.00 44.85 2.71
241 242 9.014297 ACCCTAATCTTCTTTGTCTTTACAATG 57.986 33.333 0.00 0.00 44.85 2.82
242 243 9.588096 AACCCTAATCTTCTTTGTCTTTACAAT 57.412 29.630 0.00 0.00 44.85 2.71
243 244 8.846211 CAACCCTAATCTTCTTTGTCTTTACAA 58.154 33.333 0.00 0.00 43.85 2.41
244 245 7.447238 CCAACCCTAATCTTCTTTGTCTTTACA 59.553 37.037 0.00 0.00 0.00 2.41
245 246 7.575155 GCCAACCCTAATCTTCTTTGTCTTTAC 60.575 40.741 0.00 0.00 0.00 2.01
246 247 6.433093 GCCAACCCTAATCTTCTTTGTCTTTA 59.567 38.462 0.00 0.00 0.00 1.85
247 248 5.243954 GCCAACCCTAATCTTCTTTGTCTTT 59.756 40.000 0.00 0.00 0.00 2.52
248 249 4.767409 GCCAACCCTAATCTTCTTTGTCTT 59.233 41.667 0.00 0.00 0.00 3.01
249 250 4.336280 GCCAACCCTAATCTTCTTTGTCT 58.664 43.478 0.00 0.00 0.00 3.41
250 251 3.127030 CGCCAACCCTAATCTTCTTTGTC 59.873 47.826 0.00 0.00 0.00 3.18
251 252 3.081804 CGCCAACCCTAATCTTCTTTGT 58.918 45.455 0.00 0.00 0.00 2.83
252 253 3.081804 ACGCCAACCCTAATCTTCTTTG 58.918 45.455 0.00 0.00 0.00 2.77
253 254 3.081804 CACGCCAACCCTAATCTTCTTT 58.918 45.455 0.00 0.00 0.00 2.52
254 255 2.618045 CCACGCCAACCCTAATCTTCTT 60.618 50.000 0.00 0.00 0.00 2.52
255 256 1.065418 CCACGCCAACCCTAATCTTCT 60.065 52.381 0.00 0.00 0.00 2.85
256 257 1.379527 CCACGCCAACCCTAATCTTC 58.620 55.000 0.00 0.00 0.00 2.87
257 258 0.034477 CCCACGCCAACCCTAATCTT 60.034 55.000 0.00 0.00 0.00 2.40
258 259 1.607612 CCCACGCCAACCCTAATCT 59.392 57.895 0.00 0.00 0.00 2.40
259 260 2.119029 GCCCACGCCAACCCTAATC 61.119 63.158 0.00 0.00 0.00 1.75
260 261 2.044352 GCCCACGCCAACCCTAAT 60.044 61.111 0.00 0.00 0.00 1.73
294 295 4.847516 GATTTTTCGGGCCGGCGC 62.848 66.667 32.10 32.10 0.00 6.53
295 296 4.187810 GGATTTTTCGGGCCGGCG 62.188 66.667 27.98 7.85 0.00 6.46
296 297 2.348104 AAGGATTTTTCGGGCCGGC 61.348 57.895 27.98 21.18 0.00 6.13
297 298 1.248101 ACAAGGATTTTTCGGGCCGG 61.248 55.000 27.98 8.09 0.00 6.13
298 299 0.109319 CACAAGGATTTTTCGGGCCG 60.109 55.000 22.51 22.51 0.00 6.13
299 300 0.966179 ACACAAGGATTTTTCGGGCC 59.034 50.000 0.00 0.00 0.00 5.80
300 301 1.067846 GGACACAAGGATTTTTCGGGC 60.068 52.381 0.00 0.00 0.00 6.13
301 302 2.030274 GTGGACACAAGGATTTTTCGGG 60.030 50.000 0.00 0.00 0.00 5.14
302 303 2.884639 AGTGGACACAAGGATTTTTCGG 59.115 45.455 5.14 0.00 0.00 4.30
303 304 5.181245 ACATAGTGGACACAAGGATTTTTCG 59.819 40.000 5.14 0.00 0.00 3.46
304 305 6.575162 ACATAGTGGACACAAGGATTTTTC 57.425 37.500 5.14 0.00 0.00 2.29
305 306 6.549364 TGAACATAGTGGACACAAGGATTTTT 59.451 34.615 5.14 0.00 0.00 1.94
306 307 6.068010 TGAACATAGTGGACACAAGGATTTT 58.932 36.000 5.14 0.00 0.00 1.82
307 308 5.630121 TGAACATAGTGGACACAAGGATTT 58.370 37.500 5.14 0.00 0.00 2.17
308 309 5.241403 TGAACATAGTGGACACAAGGATT 57.759 39.130 5.14 0.00 0.00 3.01
309 310 4.908601 TGAACATAGTGGACACAAGGAT 57.091 40.909 5.14 0.00 0.00 3.24
310 311 4.532126 AGATGAACATAGTGGACACAAGGA 59.468 41.667 5.14 0.00 0.00 3.36
311 312 4.836825 AGATGAACATAGTGGACACAAGG 58.163 43.478 5.14 0.00 0.00 3.61
312 313 4.872691 GGAGATGAACATAGTGGACACAAG 59.127 45.833 5.14 0.00 0.00 3.16
313 314 4.532126 AGGAGATGAACATAGTGGACACAA 59.468 41.667 5.14 0.00 0.00 3.33
314 315 4.096681 AGGAGATGAACATAGTGGACACA 58.903 43.478 5.14 0.00 0.00 3.72
315 316 4.744795 AGGAGATGAACATAGTGGACAC 57.255 45.455 0.00 0.00 0.00 3.67
316 317 5.485353 AGAAAGGAGATGAACATAGTGGACA 59.515 40.000 0.00 0.00 0.00 4.02
317 318 5.983540 AGAAAGGAGATGAACATAGTGGAC 58.016 41.667 0.00 0.00 0.00 4.02
318 319 6.441924 AGAAGAAAGGAGATGAACATAGTGGA 59.558 38.462 0.00 0.00 0.00 4.02
319 320 6.648192 AGAAGAAAGGAGATGAACATAGTGG 58.352 40.000 0.00 0.00 0.00 4.00
320 321 8.558973 AAAGAAGAAAGGAGATGAACATAGTG 57.441 34.615 0.00 0.00 0.00 2.74
321 322 8.601546 AGAAAGAAGAAAGGAGATGAACATAGT 58.398 33.333 0.00 0.00 0.00 2.12
322 323 9.447157 AAGAAAGAAGAAAGGAGATGAACATAG 57.553 33.333 0.00 0.00 0.00 2.23
323 324 9.224267 CAAGAAAGAAGAAAGGAGATGAACATA 57.776 33.333 0.00 0.00 0.00 2.29
324 325 7.723172 ACAAGAAAGAAGAAAGGAGATGAACAT 59.277 33.333 0.00 0.00 0.00 2.71
325 326 7.056635 ACAAGAAAGAAGAAAGGAGATGAACA 58.943 34.615 0.00 0.00 0.00 3.18
326 327 7.503521 ACAAGAAAGAAGAAAGGAGATGAAC 57.496 36.000 0.00 0.00 0.00 3.18
327 328 7.041780 CGAACAAGAAAGAAGAAAGGAGATGAA 60.042 37.037 0.00 0.00 0.00 2.57
328 329 6.425114 CGAACAAGAAAGAAGAAAGGAGATGA 59.575 38.462 0.00 0.00 0.00 2.92
329 330 6.425114 TCGAACAAGAAAGAAGAAAGGAGATG 59.575 38.462 0.00 0.00 0.00 2.90
330 331 6.525629 TCGAACAAGAAAGAAGAAAGGAGAT 58.474 36.000 0.00 0.00 0.00 2.75
331 332 5.914033 TCGAACAAGAAAGAAGAAAGGAGA 58.086 37.500 0.00 0.00 0.00 3.71
332 333 5.333721 GCTCGAACAAGAAAGAAGAAAGGAG 60.334 44.000 0.00 0.00 0.00 3.69
333 334 4.511826 GCTCGAACAAGAAAGAAGAAAGGA 59.488 41.667 0.00 0.00 0.00 3.36
334 335 4.609336 CGCTCGAACAAGAAAGAAGAAAGG 60.609 45.833 0.00 0.00 0.00 3.11
335 336 4.209288 TCGCTCGAACAAGAAAGAAGAAAG 59.791 41.667 0.00 0.00 0.00 2.62
336 337 4.116961 TCGCTCGAACAAGAAAGAAGAAA 58.883 39.130 0.00 0.00 0.00 2.52
337 338 3.713288 TCGCTCGAACAAGAAAGAAGAA 58.287 40.909 0.00 0.00 0.00 2.52
338 339 3.243434 ACTCGCTCGAACAAGAAAGAAGA 60.243 43.478 0.00 0.00 0.00 2.87
339 340 3.053455 ACTCGCTCGAACAAGAAAGAAG 58.947 45.455 0.00 0.00 0.00 2.85
340 341 2.794910 CACTCGCTCGAACAAGAAAGAA 59.205 45.455 0.00 0.00 0.00 2.52
341 342 2.034179 TCACTCGCTCGAACAAGAAAGA 59.966 45.455 0.00 0.00 0.00 2.52
342 343 2.394708 TCACTCGCTCGAACAAGAAAG 58.605 47.619 0.00 0.00 0.00 2.62
343 344 2.394708 CTCACTCGCTCGAACAAGAAA 58.605 47.619 0.00 0.00 0.00 2.52
344 345 1.930817 GCTCACTCGCTCGAACAAGAA 60.931 52.381 0.00 0.00 0.00 2.52
345 346 0.387367 GCTCACTCGCTCGAACAAGA 60.387 55.000 0.00 0.00 0.00 3.02
346 347 0.387878 AGCTCACTCGCTCGAACAAG 60.388 55.000 0.00 0.00 34.57 3.16
347 348 0.664466 CAGCTCACTCGCTCGAACAA 60.664 55.000 0.00 0.00 38.41 2.83
348 349 1.081175 CAGCTCACTCGCTCGAACA 60.081 57.895 0.00 0.00 38.41 3.18
349 350 0.796491 CTCAGCTCACTCGCTCGAAC 60.796 60.000 0.00 0.00 38.41 3.95
350 351 0.955919 TCTCAGCTCACTCGCTCGAA 60.956 55.000 0.00 0.00 38.41 3.71
351 352 1.365368 CTCTCAGCTCACTCGCTCGA 61.365 60.000 0.00 0.00 38.41 4.04
352 353 1.062365 CTCTCAGCTCACTCGCTCG 59.938 63.158 0.00 0.00 38.41 5.03
353 354 0.378257 CTCTCTCAGCTCACTCGCTC 59.622 60.000 0.00 0.00 38.41 5.03
354 355 0.035534 TCTCTCTCAGCTCACTCGCT 60.036 55.000 0.00 0.00 41.90 4.93
355 356 0.378257 CTCTCTCTCAGCTCACTCGC 59.622 60.000 0.00 0.00 0.00 5.03
356 357 1.935873 CTCTCTCTCTCAGCTCACTCG 59.064 57.143 0.00 0.00 0.00 4.18
357 358 3.201290 CTCTCTCTCTCTCAGCTCACTC 58.799 54.545 0.00 0.00 0.00 3.51
358 359 2.681976 GCTCTCTCTCTCTCAGCTCACT 60.682 54.545 0.00 0.00 0.00 3.41
359 360 1.672881 GCTCTCTCTCTCTCAGCTCAC 59.327 57.143 0.00 0.00 0.00 3.51
360 361 1.743431 CGCTCTCTCTCTCTCAGCTCA 60.743 57.143 0.00 0.00 0.00 4.26
361 362 0.940126 CGCTCTCTCTCTCTCAGCTC 59.060 60.000 0.00 0.00 0.00 4.09
362 363 1.097547 GCGCTCTCTCTCTCTCAGCT 61.098 60.000 0.00 0.00 0.00 4.24
363 364 1.356624 GCGCTCTCTCTCTCTCAGC 59.643 63.158 0.00 0.00 0.00 4.26
364 365 0.659427 CTGCGCTCTCTCTCTCTCAG 59.341 60.000 9.73 0.00 0.00 3.35
365 366 1.375853 GCTGCGCTCTCTCTCTCTCA 61.376 60.000 9.73 0.00 0.00 3.27
366 367 1.097547 AGCTGCGCTCTCTCTCTCTC 61.098 60.000 9.73 0.00 30.62 3.20
367 368 0.180171 TAGCTGCGCTCTCTCTCTCT 59.820 55.000 9.73 0.00 40.44 3.10
368 369 0.588252 CTAGCTGCGCTCTCTCTCTC 59.412 60.000 9.73 0.00 40.44 3.20
369 370 0.819259 CCTAGCTGCGCTCTCTCTCT 60.819 60.000 9.73 0.00 40.44 3.10
370 371 1.654220 CCTAGCTGCGCTCTCTCTC 59.346 63.158 9.73 0.00 40.44 3.20
371 372 2.489275 GCCTAGCTGCGCTCTCTCT 61.489 63.158 9.73 0.73 40.44 3.10
372 373 2.027460 GCCTAGCTGCGCTCTCTC 59.973 66.667 9.73 0.00 40.44 3.20
373 374 3.535962 GGCCTAGCTGCGCTCTCT 61.536 66.667 9.73 5.37 40.44 3.10
374 375 3.788616 CTGGCCTAGCTGCGCTCTC 62.789 68.421 9.73 0.00 40.44 3.20
375 376 3.847602 CTGGCCTAGCTGCGCTCT 61.848 66.667 9.73 8.56 40.44 4.09
376 377 4.906792 CCTGGCCTAGCTGCGCTC 62.907 72.222 9.73 0.00 40.44 5.03
379 380 4.479993 AAGCCTGGCCTAGCTGCG 62.480 66.667 19.08 0.00 39.87 5.18
380 381 2.827642 CAAGCCTGGCCTAGCTGC 60.828 66.667 19.08 7.52 39.87 5.25
381 382 2.124403 CCAAGCCTGGCCTAGCTG 60.124 66.667 19.08 13.14 39.87 4.24
389 390 0.249573 CTTGTTGTTGCCAAGCCTGG 60.250 55.000 0.00 0.00 46.65 4.45
390 391 0.746063 TCTTGTTGTTGCCAAGCCTG 59.254 50.000 0.00 0.00 39.30 4.85
391 392 1.708341 ATCTTGTTGTTGCCAAGCCT 58.292 45.000 0.00 0.00 39.30 4.58
392 393 2.137523 CAATCTTGTTGTTGCCAAGCC 58.862 47.619 0.00 0.00 39.30 4.35
393 394 2.796593 GTCAATCTTGTTGTTGCCAAGC 59.203 45.455 0.00 0.00 39.30 4.01
394 395 3.383761 GGTCAATCTTGTTGTTGCCAAG 58.616 45.455 0.00 0.00 40.51 3.61
395 396 2.223688 CGGTCAATCTTGTTGTTGCCAA 60.224 45.455 0.00 0.00 0.00 4.52
396 397 1.336440 CGGTCAATCTTGTTGTTGCCA 59.664 47.619 0.00 0.00 0.00 4.92
397 398 1.606668 TCGGTCAATCTTGTTGTTGCC 59.393 47.619 0.00 0.00 0.00 4.52
398 399 2.918131 GCTCGGTCAATCTTGTTGTTGC 60.918 50.000 0.00 0.00 0.00 4.17
399 400 2.549754 AGCTCGGTCAATCTTGTTGTTG 59.450 45.455 0.00 0.00 0.00 3.33
400 401 2.549754 CAGCTCGGTCAATCTTGTTGTT 59.450 45.455 0.00 0.00 0.00 2.83
401 402 2.146342 CAGCTCGGTCAATCTTGTTGT 58.854 47.619 0.00 0.00 0.00 3.32
402 403 1.135859 GCAGCTCGGTCAATCTTGTTG 60.136 52.381 0.00 0.00 0.00 3.33
403 404 1.160137 GCAGCTCGGTCAATCTTGTT 58.840 50.000 0.00 0.00 0.00 2.83
404 405 0.674895 GGCAGCTCGGTCAATCTTGT 60.675 55.000 0.00 0.00 0.00 3.16
405 406 0.674581 TGGCAGCTCGGTCAATCTTG 60.675 55.000 0.00 0.00 0.00 3.02
406 407 0.036732 TTGGCAGCTCGGTCAATCTT 59.963 50.000 0.00 0.00 0.00 2.40
463 469 5.345702 AGTTAGACGCGCTGTTAATAATGA 58.654 37.500 5.73 0.00 0.00 2.57
490 496 1.618837 AGCGACCAGAGCTAGTTCAAA 59.381 47.619 9.43 0.00 44.05 2.69
492 498 1.743958 GTAGCGACCAGAGCTAGTTCA 59.256 52.381 9.43 0.00 46.42 3.18
499 505 0.317436 CAGATCGTAGCGACCAGAGC 60.317 60.000 0.00 0.00 39.18 4.09
501 507 0.107361 TCCAGATCGTAGCGACCAGA 60.107 55.000 0.00 0.00 39.18 3.86
503 509 0.738975 CTTCCAGATCGTAGCGACCA 59.261 55.000 0.00 0.00 39.18 4.02
504 510 1.002251 CTCTTCCAGATCGTAGCGACC 60.002 57.143 0.00 0.00 39.18 4.79
508 514 0.663688 TCGCTCTTCCAGATCGTAGC 59.336 55.000 0.00 0.00 35.57 3.58
515 521 2.687425 CTCATTCTCTCGCTCTTCCAGA 59.313 50.000 0.00 0.00 0.00 3.86
517 523 2.728007 TCTCATTCTCTCGCTCTTCCA 58.272 47.619 0.00 0.00 0.00 3.53
554 560 6.493189 TCATGGTTTGGATGCTAGTACATA 57.507 37.500 0.00 0.00 0.00 2.29
556 562 4.769688 CTCATGGTTTGGATGCTAGTACA 58.230 43.478 0.00 0.00 0.00 2.90
560 566 1.600957 CGCTCATGGTTTGGATGCTAG 59.399 52.381 0.00 0.00 0.00 3.42
572 578 1.807165 CGACACAGACCGCTCATGG 60.807 63.158 0.00 0.00 0.00 3.66
590 596 3.098636 GGAAATTACGAGTTCATTGCGC 58.901 45.455 0.00 0.00 31.71 6.09
615 621 3.206150 CCATACATGGTCGGAGAAAAGG 58.794 50.000 0.00 0.00 43.05 3.11
700 706 2.230508 GTCACTTGTCCGGTCTGATGTA 59.769 50.000 0.00 0.00 0.00 2.29
701 707 1.000955 GTCACTTGTCCGGTCTGATGT 59.999 52.381 0.00 0.00 0.00 3.06
702 708 1.714794 GTCACTTGTCCGGTCTGATG 58.285 55.000 0.00 0.00 0.00 3.07
728 734 0.036010 AATGACCTGCCGGAGTCTTG 60.036 55.000 5.05 0.00 34.02 3.02
855 863 2.789917 GTCATCAGCCTTGCGCAG 59.210 61.111 11.31 0.00 41.38 5.18
877 895 1.244816 GGGGCGGGTCAATTTATAGC 58.755 55.000 0.00 0.00 0.00 2.97
916 934 1.487976 CTCTATGGTGTGCTGTGGGAT 59.512 52.381 0.00 0.00 0.00 3.85
952 974 2.882777 CGCTGCTGACTGTAGGCG 60.883 66.667 0.00 0.00 0.00 5.52
953 975 3.191539 GCGCTGCTGACTGTAGGC 61.192 66.667 0.00 0.00 0.00 3.93
983 1005 3.703052 AGCCATCAATCAAAACAGGGATC 59.297 43.478 0.00 0.00 0.00 3.36
986 1008 2.675889 GCAGCCATCAATCAAAACAGGG 60.676 50.000 0.00 0.00 0.00 4.45
989 1011 1.969208 TGGCAGCCATCAATCAAAACA 59.031 42.857 11.22 0.00 0.00 2.83
990 1012 2.747396 TGGCAGCCATCAATCAAAAC 57.253 45.000 11.22 0.00 0.00 2.43
998 1060 0.681887 CACCTTCATGGCAGCCATCA 60.682 55.000 25.23 9.55 43.15 3.07
1005 1067 2.754552 GCAAGTAATCACCTTCATGGCA 59.245 45.455 0.00 0.00 40.22 4.92
1046 1108 6.150641 TGCAATCAAAATCAGAAGAGAAGAGG 59.849 38.462 0.00 0.00 0.00 3.69
1104 1171 4.179579 GAATTCCGCAGCCGCCAC 62.180 66.667 0.00 0.00 33.11 5.01
1130 1197 2.939022 GTGCACGTCCAGCTTCAC 59.061 61.111 0.00 0.00 0.00 3.18
1192 1259 5.116882 AGAAACAGAGGATTATTACCGTGC 58.883 41.667 0.00 0.00 0.00 5.34
1207 1274 5.245751 AGAGCAAGAAGATGAGAGAAACAGA 59.754 40.000 0.00 0.00 0.00 3.41
1241 3373 1.880941 ACTAGTGTCCCCCTTGATCC 58.119 55.000 0.00 0.00 0.00 3.36
1247 3379 1.891450 CGTCAGAACTAGTGTCCCCCT 60.891 57.143 0.00 0.00 0.00 4.79
1254 3386 3.489785 GGTTGTTGTCGTCAGAACTAGTG 59.510 47.826 0.00 0.00 0.00 2.74
1255 3387 3.492137 GGGTTGTTGTCGTCAGAACTAGT 60.492 47.826 0.00 0.00 0.00 2.57
1256 3388 3.057734 GGGTTGTTGTCGTCAGAACTAG 58.942 50.000 0.00 0.00 0.00 2.57
1257 3389 2.696707 AGGGTTGTTGTCGTCAGAACTA 59.303 45.455 6.60 0.00 0.00 2.24
1582 3786 6.058183 CACAAAATATAGTGAAGGGAGGGAG 58.942 44.000 0.00 0.00 37.97 4.30
1594 3803 2.297701 CGGCCAGCCACAAAATATAGT 58.702 47.619 9.78 0.00 35.37 2.12
1595 3804 2.290641 GACGGCCAGCCACAAAATATAG 59.709 50.000 9.78 0.00 35.37 1.31
1598 3807 0.963355 GGACGGCCAGCCACAAAATA 60.963 55.000 0.00 0.00 35.37 1.40
1791 4023 4.222114 CAACTTGATGCGTTTCCTTTCTC 58.778 43.478 0.00 0.00 0.00 2.87
1802 4034 5.516339 ACTTTTCTTTGAACAACTTGATGCG 59.484 36.000 0.00 0.00 0.00 4.73
1803 4035 6.311200 ACACTTTTCTTTGAACAACTTGATGC 59.689 34.615 0.00 0.00 0.00 3.91
1816 4048 5.125417 TGTTCCTTCTCCACACTTTTCTTTG 59.875 40.000 0.00 0.00 0.00 2.77
1838 4109 5.157940 ACAACTGCAGACATTCTATCTGT 57.842 39.130 23.35 4.61 44.60 3.41
1849 4120 3.623060 TCTCTGACAAAACAACTGCAGAC 59.377 43.478 23.35 0.81 0.00 3.51
1850 4121 3.872696 TCTCTGACAAAACAACTGCAGA 58.127 40.909 23.35 0.00 0.00 4.26
1859 4130 6.038714 AGTCCATCAACTTTCTCTGACAAAAC 59.961 38.462 0.00 0.00 0.00 2.43
1860 4131 6.038603 CAGTCCATCAACTTTCTCTGACAAAA 59.961 38.462 0.00 0.00 0.00 2.44
1864 4135 3.434984 GCAGTCCATCAACTTTCTCTGAC 59.565 47.826 0.00 0.00 0.00 3.51
1870 4141 7.945033 TTAAAAATGCAGTCCATCAACTTTC 57.055 32.000 0.00 0.00 31.43 2.62
1874 4148 8.243426 TCACTATTAAAAATGCAGTCCATCAAC 58.757 33.333 0.00 0.00 31.43 3.18
1981 4259 2.917933 AGTGTGCTCAGTTTGCAGTAA 58.082 42.857 0.00 0.00 41.41 2.24
1993 4271 8.438676 AACATATAACCATCTAAAGTGTGCTC 57.561 34.615 0.00 0.00 0.00 4.26
2010 4292 5.477291 TGGTTTCGGCAAAAGGAACATATAA 59.523 36.000 0.00 0.00 0.00 0.98
2011 4293 5.010933 TGGTTTCGGCAAAAGGAACATATA 58.989 37.500 0.00 0.00 0.00 0.86
2012 4294 3.829601 TGGTTTCGGCAAAAGGAACATAT 59.170 39.130 0.00 0.00 0.00 1.78
2015 4297 1.407258 CTGGTTTCGGCAAAAGGAACA 59.593 47.619 0.00 0.00 0.00 3.18
2026 4308 2.742372 CGGGCAGACTGGTTTCGG 60.742 66.667 4.26 0.00 0.00 4.30
2028 4310 2.359975 CCCGGGCAGACTGGTTTC 60.360 66.667 8.08 0.00 44.78 2.78
2042 4324 5.086058 CGTCAAAATCATAACTTGAACCCG 58.914 41.667 0.00 0.00 38.03 5.28
2094 4382 8.136165 GCTGAAAGAGTAGAACCGAATAATCTA 58.864 37.037 0.00 0.00 34.07 1.98
2100 4388 3.512680 CGCTGAAAGAGTAGAACCGAAT 58.487 45.455 0.00 0.00 34.07 3.34
2106 4394 3.693085 ACGATACCGCTGAAAGAGTAGAA 59.307 43.478 0.00 0.00 39.95 2.10
2127 4415 3.698463 CGCGGTTGACGGACACAC 61.698 66.667 0.00 0.00 44.51 3.82
2136 4424 0.455464 CATACACGTCTCGCGGTTGA 60.455 55.000 6.13 0.00 46.52 3.18
2142 4430 3.538392 GCAAAATTTCATACACGTCTCGC 59.462 43.478 0.00 0.00 0.00 5.03
2144 4432 8.667987 TTAATGCAAAATTTCATACACGTCTC 57.332 30.769 0.00 0.00 0.00 3.36
2183 4471 5.235401 GTCCGCCTTAATTTCTCATCTCTTC 59.765 44.000 0.00 0.00 0.00 2.87
2199 4487 0.608640 CCAGTCTAGTTGTCCGCCTT 59.391 55.000 0.00 0.00 0.00 4.35
2215 4503 2.376808 AAAGATGCACGAGAGACCAG 57.623 50.000 0.00 0.00 0.00 4.00
2377 4672 4.478699 TCATGTGTTAGGACTCGTTTACG 58.521 43.478 0.00 0.00 41.45 3.18
2380 4675 5.575606 CGTAATCATGTGTTAGGACTCGTTT 59.424 40.000 0.00 0.00 0.00 3.60
2381 4676 5.100259 CGTAATCATGTGTTAGGACTCGTT 58.900 41.667 0.00 0.00 0.00 3.85
2424 4725 6.742718 CGGAATGTGTATTTTGTGAGATGAAC 59.257 38.462 0.00 0.00 0.00 3.18
2426 4727 6.169800 TCGGAATGTGTATTTTGTGAGATGA 58.830 36.000 0.00 0.00 0.00 2.92
2448 4749 1.261619 GCGATTAAGACCTGCCATTCG 59.738 52.381 0.00 0.00 0.00 3.34
2449 4750 2.289002 CAGCGATTAAGACCTGCCATTC 59.711 50.000 0.00 0.00 0.00 2.67
2497 4830 8.817100 CGTTGAACACAAAAGATGCTCTATATA 58.183 33.333 0.00 0.00 0.00 0.86
2505 4838 3.042887 GTCCGTTGAACACAAAAGATGC 58.957 45.455 0.00 0.00 0.00 3.91
2538 4872 1.180907 TAAAATGCGCATGCCTTGGA 58.819 45.000 26.09 3.93 41.78 3.53
2539 4873 2.129607 GATAAAATGCGCATGCCTTGG 58.870 47.619 26.09 0.00 41.78 3.61
2540 4874 2.129607 GGATAAAATGCGCATGCCTTG 58.870 47.619 26.09 0.00 41.78 3.61
2541 4875 1.755959 TGGATAAAATGCGCATGCCTT 59.244 42.857 26.09 19.09 41.78 4.35
2542 4876 1.401761 TGGATAAAATGCGCATGCCT 58.598 45.000 26.09 13.74 41.78 4.75
2543 4877 2.443887 ATGGATAAAATGCGCATGCC 57.556 45.000 26.09 19.35 41.78 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.