Multiple sequence alignment - TraesCS2A01G537900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G537900 chr2A 100.000 5200 0 0 1 5200 751206455 751211654 0.000000e+00 9603.0
1 TraesCS2A01G537900 chr2A 87.971 3317 337 35 962 4243 751236787 751240076 0.000000e+00 3858.0
2 TraesCS2A01G537900 chr2A 88.135 3270 328 34 1008 4243 751267219 751270462 0.000000e+00 3834.0
3 TraesCS2A01G537900 chr2A 88.965 1758 158 23 2505 4243 751233149 751234889 0.000000e+00 2139.0
4 TraesCS2A01G537900 chr2A 82.931 1986 251 55 2289 4244 719730712 719728785 0.000000e+00 1709.0
5 TraesCS2A01G537900 chr2A 87.290 1487 172 8 1008 2478 751288144 751289629 0.000000e+00 1683.0
6 TraesCS2A01G537900 chr2A 86.385 1513 176 20 967 2451 751231641 751233151 0.000000e+00 1626.0
7 TraesCS2A01G537900 chr2A 84.949 392 43 7 4297 4680 751235032 751235415 2.940000e-102 383.0
8 TraesCS2A01G537900 chr2A 96.386 83 2 1 622 703 413323718 413323800 9.080000e-28 135.0
9 TraesCS2A01G537900 chr2A 91.304 92 6 2 616 706 751207160 751207070 1.970000e-24 124.0
10 TraesCS2A01G537900 chr2A 84.252 127 13 5 2499 2619 751268554 751268679 3.290000e-22 117.0
11 TraesCS2A01G537900 chr2B 93.339 4519 212 37 700 5163 759344550 759349034 0.000000e+00 6595.0
12 TraesCS2A01G537900 chr2B 87.776 3354 342 40 921 4238 759439034 759442355 0.000000e+00 3860.0
13 TraesCS2A01G537900 chr2B 82.897 1988 252 57 2289 4244 706732009 706730078 0.000000e+00 1707.0
14 TraesCS2A01G537900 chr2B 82.771 1985 250 60 2294 4244 706923939 706922013 0.000000e+00 1687.0
15 TraesCS2A01G537900 chr2B 90.860 186 17 0 361 546 759344262 759344447 3.110000e-62 250.0
16 TraesCS2A01G537900 chr2D 87.583 3326 340 44 962 4244 619700893 619704188 0.000000e+00 3786.0
17 TraesCS2A01G537900 chr2D 93.029 1750 109 11 2499 4239 619664420 619666165 0.000000e+00 2543.0
18 TraesCS2A01G537900 chr2D 91.994 1324 93 5 1120 2431 619663094 619664416 0.000000e+00 1845.0
19 TraesCS2A01G537900 chr2D 83.362 1767 210 49 2505 4244 585687837 585686128 0.000000e+00 1557.0
20 TraesCS2A01G537900 chr2D 88.757 676 35 18 4486 5132 619666412 619667075 0.000000e+00 789.0
21 TraesCS2A01G537900 chr2D 89.796 392 24 5 155 545 619626554 619626930 6.050000e-134 488.0
22 TraesCS2A01G537900 chr2D 94.505 91 5 0 774 864 619634061 619634151 1.950000e-29 141.0
23 TraesCS2A01G537900 chr2D 94.444 90 4 1 615 703 382442509 382442420 2.530000e-28 137.0
24 TraesCS2A01G537900 chr2D 96.296 81 3 0 621 701 382442421 382442501 3.270000e-27 134.0
25 TraesCS2A01G537900 chr2D 82.166 157 11 8 2 154 619625293 619625436 9.150000e-23 119.0
26 TraesCS2A01G537900 chr2D 75.796 157 25 10 710 862 619700622 619700769 3.360000e-07 67.6
27 TraesCS2A01G537900 chrUn 87.223 1487 173 8 1008 2478 337511517 337513002 0.000000e+00 1677.0
28 TraesCS2A01G537900 chrUn 84.252 127 13 5 2499 2619 337512853 337512978 3.290000e-22 117.0
29 TraesCS2A01G537900 chr4A 95.238 84 2 1 622 703 460740124 460740041 1.170000e-26 132.0
30 TraesCS2A01G537900 chr1B 93.407 91 3 1 615 702 95298214 95298304 1.170000e-26 132.0
31 TraesCS2A01G537900 chr1D 91.667 96 5 3 608 701 86902041 86902135 4.230000e-26 130.0
32 TraesCS2A01G537900 chr1D 92.308 91 4 3 611 701 418174313 418174400 5.470000e-25 126.0
33 TraesCS2A01G537900 chr1A 88.119 101 10 2 615 714 3384983 3385082 9.150000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G537900 chr2A 751206455 751211654 5199 False 9603.000000 9603 100.0000 1 5200 1 chr2A.!!$F2 5199
1 TraesCS2A01G537900 chr2A 751231641 751240076 8435 False 2001.500000 3858 87.0675 962 4680 4 chr2A.!!$F4 3718
2 TraesCS2A01G537900 chr2A 751267219 751270462 3243 False 1975.500000 3834 86.1935 1008 4243 2 chr2A.!!$F5 3235
3 TraesCS2A01G537900 chr2A 719728785 719730712 1927 True 1709.000000 1709 82.9310 2289 4244 1 chr2A.!!$R1 1955
4 TraesCS2A01G537900 chr2A 751288144 751289629 1485 False 1683.000000 1683 87.2900 1008 2478 1 chr2A.!!$F3 1470
5 TraesCS2A01G537900 chr2B 759439034 759442355 3321 False 3860.000000 3860 87.7760 921 4238 1 chr2B.!!$F1 3317
6 TraesCS2A01G537900 chr2B 759344262 759349034 4772 False 3422.500000 6595 92.0995 361 5163 2 chr2B.!!$F2 4802
7 TraesCS2A01G537900 chr2B 706730078 706732009 1931 True 1707.000000 1707 82.8970 2289 4244 1 chr2B.!!$R1 1955
8 TraesCS2A01G537900 chr2B 706922013 706923939 1926 True 1687.000000 1687 82.7710 2294 4244 1 chr2B.!!$R2 1950
9 TraesCS2A01G537900 chr2D 619700622 619704188 3566 False 1926.800000 3786 81.6895 710 4244 2 chr2D.!!$F5 3534
10 TraesCS2A01G537900 chr2D 619663094 619667075 3981 False 1725.666667 2543 91.2600 1120 5132 3 chr2D.!!$F4 4012
11 TraesCS2A01G537900 chr2D 585686128 585687837 1709 True 1557.000000 1557 83.3620 2505 4244 1 chr2D.!!$R2 1739
12 TraesCS2A01G537900 chr2D 619625293 619626930 1637 False 303.500000 488 85.9810 2 545 2 chr2D.!!$F3 543
13 TraesCS2A01G537900 chrUn 337511517 337513002 1485 False 897.000000 1677 85.7375 1008 2619 2 chrUn.!!$F1 1611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 1371 0.179081 ACCGCCGCCTTTATCTTCTC 60.179 55.0 0.00 0.0 0.00 2.87 F
872 2035 0.534203 GCGTTTCCCTCCACACAGAA 60.534 55.0 0.00 0.0 0.00 3.02 F
1263 5483 0.251634 CTTCTCCTGGGAAGCTGGTC 59.748 60.0 10.61 0.0 36.68 4.02 F
2353 6750 0.236187 TACGACAAACACAATGCCGC 59.764 50.0 0.00 0.0 0.00 6.53 F
2355 6752 0.593518 CGACAAACACAATGCCGCAA 60.594 50.0 0.00 0.0 0.00 4.85 F
2357 6754 0.743688 ACAAACACAATGCCGCAAGA 59.256 45.0 0.00 0.0 43.02 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1094 5314 0.737715 ATTGTCCGAGACGAGCTTGC 60.738 55.000 0.00 0.00 34.95 4.01 R
2082 6306 1.024271 AATCGCAATTACGGCTGCAT 58.976 45.000 0.50 0.00 38.52 3.96 R
2910 7501 0.535335 TCCCGAGCATGTTGTAGTCC 59.465 55.000 0.00 0.00 0.00 3.85 R
3592 8195 0.890683 AAGCTTTACCTGGTGCATGC 59.109 50.000 11.82 11.82 0.00 4.06 R
3779 8385 1.115467 AGTCCATGACGAGATGGGAC 58.885 55.000 14.76 11.89 42.95 4.46 R
4356 8966 1.207329 AGACCCATTGACTAACCGAGC 59.793 52.381 0.00 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 61 9.824534 ACAAAATAAAGTGAAAAACAAAAGCAG 57.175 25.926 0.00 0.00 0.00 4.24
236 1358 0.734942 AGTTAATGACGTCACCGCCG 60.735 55.000 22.71 0.00 37.70 6.46
237 1359 2.095847 TTAATGACGTCACCGCCGC 61.096 57.895 22.71 0.00 37.70 6.53
244 1366 2.522638 CGTCACCGCCGCCTTTATC 61.523 63.158 0.00 0.00 0.00 1.75
246 1368 0.743345 GTCACCGCCGCCTTTATCTT 60.743 55.000 0.00 0.00 0.00 2.40
247 1369 0.461339 TCACCGCCGCCTTTATCTTC 60.461 55.000 0.00 0.00 0.00 2.87
249 1371 0.179081 ACCGCCGCCTTTATCTTCTC 60.179 55.000 0.00 0.00 0.00 2.87
289 1411 2.432628 CGAACCAGTCCGGCACTC 60.433 66.667 0.00 0.00 39.03 3.51
333 1455 1.000866 GCTGATTTCCCTTGGCCCT 59.999 57.895 0.00 0.00 0.00 5.19
553 1710 5.477607 ACTACTTGTACAGTTGTATGCCA 57.522 39.130 0.00 0.00 39.41 4.92
587 1744 0.588252 GCCTGCTGTACACAACACAG 59.412 55.000 0.00 0.00 45.08 3.66
593 1750 3.878086 CTGTACACAACACAGCGAAAT 57.122 42.857 0.00 0.00 37.22 2.17
594 1751 4.209452 CTGTACACAACACAGCGAAATT 57.791 40.909 0.00 0.00 37.22 1.82
596 1753 3.375610 TGTACACAACACAGCGAAATTGT 59.624 39.130 0.00 0.00 35.69 2.71
631 1788 5.537188 ACGTAGTAGAAGATACTACCTCCG 58.463 45.833 15.85 9.28 44.14 4.63
632 1789 5.069781 ACGTAGTAGAAGATACTACCTCCGT 59.930 44.000 15.85 9.76 44.14 4.69
635 1792 5.375773 AGTAGAAGATACTACCTCCGTTCC 58.624 45.833 0.00 0.00 42.34 3.62
637 1794 4.607239 AGAAGATACTACCTCCGTTCCAA 58.393 43.478 0.00 0.00 0.00 3.53
638 1795 5.021458 AGAAGATACTACCTCCGTTCCAAA 58.979 41.667 0.00 0.00 0.00 3.28
639 1796 5.661759 AGAAGATACTACCTCCGTTCCAAAT 59.338 40.000 0.00 0.00 0.00 2.32
640 1797 5.952347 AGATACTACCTCCGTTCCAAATT 57.048 39.130 0.00 0.00 0.00 1.82
642 1799 6.814043 AGATACTACCTCCGTTCCAAATTAC 58.186 40.000 0.00 0.00 0.00 1.89
644 1801 5.082251 ACTACCTCCGTTCCAAATTACTC 57.918 43.478 0.00 0.00 0.00 2.59
645 1802 2.968675 ACCTCCGTTCCAAATTACTCG 58.031 47.619 0.00 0.00 0.00 4.18
646 1803 2.301009 ACCTCCGTTCCAAATTACTCGT 59.699 45.455 0.00 0.00 0.00 4.18
647 1804 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
648 1805 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
650 1807 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
651 1808 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
652 1809 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
654 1811 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
657 1814 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
658 1815 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
659 1816 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
660 1817 6.849588 AATTACTCGTCGTGGTTTTAGTTT 57.150 33.333 0.00 0.00 0.00 2.66
662 1819 3.784338 ACTCGTCGTGGTTTTAGTTTGA 58.216 40.909 0.00 0.00 0.00 2.69
663 1820 4.183101 ACTCGTCGTGGTTTTAGTTTGAA 58.817 39.130 0.00 0.00 0.00 2.69
664 1821 4.033243 ACTCGTCGTGGTTTTAGTTTGAAC 59.967 41.667 0.00 0.00 0.00 3.18
665 1822 4.183101 TCGTCGTGGTTTTAGTTTGAACT 58.817 39.130 1.60 1.60 42.91 3.01
667 1824 5.809562 TCGTCGTGGTTTTAGTTTGAACTAA 59.190 36.000 11.28 11.28 46.58 2.24
677 1834 4.525411 AGTTTGAACTAAAACCACGACG 57.475 40.909 0.00 0.00 40.26 5.12
678 1835 4.183101 AGTTTGAACTAAAACCACGACGA 58.817 39.130 0.00 0.00 40.26 4.20
679 1836 4.269363 AGTTTGAACTAAAACCACGACGAG 59.731 41.667 0.00 0.00 40.26 4.18
680 1837 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
684 1841 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
686 1843 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
687 1844 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
688 1845 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
689 1846 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
690 1847 3.934068 ACCACGACGAGTAATTTGGAAT 58.066 40.909 0.00 0.00 0.00 3.01
691 1848 3.682858 ACCACGACGAGTAATTTGGAATG 59.317 43.478 0.00 0.00 0.00 2.67
692 1849 3.063452 CCACGACGAGTAATTTGGAATGG 59.937 47.826 0.00 0.00 0.00 3.16
693 1850 3.930229 CACGACGAGTAATTTGGAATGGA 59.070 43.478 0.00 0.00 0.00 3.41
694 1851 4.032900 CACGACGAGTAATTTGGAATGGAG 59.967 45.833 0.00 0.00 0.00 3.86
696 1853 3.877508 GACGAGTAATTTGGAATGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
697 1854 3.521937 ACGAGTAATTTGGAATGGAGGGA 59.478 43.478 0.00 0.00 0.00 4.20
698 1855 4.130118 CGAGTAATTTGGAATGGAGGGAG 58.870 47.826 0.00 0.00 0.00 4.30
707 1864 5.796502 TGGAATGGAGGGAGTATTTCTTT 57.203 39.130 0.00 0.00 0.00 2.52
711 1868 4.993705 TGGAGGGAGTATTTCTTTGTGT 57.006 40.909 0.00 0.00 0.00 3.72
714 1872 5.163141 TGGAGGGAGTATTTCTTTGTGTGAA 60.163 40.000 0.00 0.00 0.00 3.18
771 1934 2.169832 TACTCACTCTTGCACCTTGC 57.830 50.000 0.00 0.00 45.29 4.01
786 1949 1.203052 CCTTGCATTGTGTGGTCATCC 59.797 52.381 0.00 0.00 0.00 3.51
821 1984 6.484540 CAAATGTGATTGACTGATGAGCTAC 58.515 40.000 0.00 0.00 31.84 3.58
859 2022 1.458827 CAGAAGTCAGAGCAGCGTTTC 59.541 52.381 0.00 0.00 0.00 2.78
864 2027 1.743252 CAGAGCAGCGTTTCCCTCC 60.743 63.158 0.00 0.00 0.00 4.30
867 2030 2.281484 GCAGCGTTTCCCTCCACA 60.281 61.111 0.00 0.00 0.00 4.17
868 2031 2.617274 GCAGCGTTTCCCTCCACAC 61.617 63.158 0.00 0.00 0.00 3.82
869 2032 1.227823 CAGCGTTTCCCTCCACACA 60.228 57.895 0.00 0.00 0.00 3.72
870 2033 1.071471 AGCGTTTCCCTCCACACAG 59.929 57.895 0.00 0.00 0.00 3.66
871 2034 1.070786 GCGTTTCCCTCCACACAGA 59.929 57.895 0.00 0.00 0.00 3.41
872 2035 0.534203 GCGTTTCCCTCCACACAGAA 60.534 55.000 0.00 0.00 0.00 3.02
874 2037 1.070134 CGTTTCCCTCCACACAGAAGA 59.930 52.381 0.00 0.00 0.00 2.87
914 2090 4.802248 GCAATCGATCCCTAAGCATCTTCT 60.802 45.833 0.00 0.00 0.00 2.85
917 2093 3.070159 TCGATCCCTAAGCATCTTCTTGG 59.930 47.826 0.00 0.00 0.00 3.61
919 2095 2.200081 TCCCTAAGCATCTTCTTGGCT 58.800 47.619 0.00 0.00 40.14 4.75
966 2142 3.754850 TCATTTGATCTTCACAGCACAGG 59.245 43.478 0.00 0.00 0.00 4.00
986 5200 1.723220 CATGAGGCATATGCGAGAGG 58.277 55.000 21.04 7.20 43.26 3.69
1021 5241 1.257743 GGCTCCCCTCCAAGTTTTTC 58.742 55.000 0.00 0.00 0.00 2.29
1263 5483 0.251634 CTTCTCCTGGGAAGCTGGTC 59.748 60.000 10.61 0.00 36.68 4.02
1288 5508 0.666577 CAACAACTCCGACCTCGTCC 60.667 60.000 0.00 0.00 37.74 4.79
1404 5624 0.409092 TGGTCATCCAGTTGCCCAAT 59.591 50.000 0.00 0.00 39.03 3.16
1407 5627 0.409092 TCATCCAGTTGCCCAATGGT 59.591 50.000 0.00 0.00 35.51 3.55
1734 5958 1.182667 TGACATTCACCGTCTCCGAT 58.817 50.000 0.00 0.00 35.63 4.18
1918 6142 1.267806 CAGTTCCGAAATGCAACTGCT 59.732 47.619 2.95 0.00 42.66 4.24
1936 6160 1.271379 GCTTCAGTGGGTTTGAGCCTA 60.271 52.381 0.00 0.00 36.53 3.93
2013 6237 4.201920 GGTGGCGATAATTTCTTGACCTTC 60.202 45.833 0.00 0.00 0.00 3.46
2082 6306 0.321346 TCGACCAATGCAGAGCAGAA 59.679 50.000 0.00 0.00 43.65 3.02
2152 6376 1.374631 GGCAGCACGTCTGATGACA 60.375 57.895 16.09 0.00 41.92 3.58
2228 6458 1.255667 GGCGAGAACCTGTACCTCCA 61.256 60.000 0.00 0.00 0.00 3.86
2230 6460 2.029623 GCGAGAACCTGTACCTCCATA 58.970 52.381 0.00 0.00 0.00 2.74
2348 6745 8.346300 TGACACAATAATTACGACAAACACAAT 58.654 29.630 0.00 0.00 0.00 2.71
2349 6746 8.500837 ACACAATAATTACGACAAACACAATG 57.499 30.769 0.00 0.00 0.00 2.82
2350 6747 7.114247 ACACAATAATTACGACAAACACAATGC 59.886 33.333 0.00 0.00 0.00 3.56
2351 6748 6.584563 ACAATAATTACGACAAACACAATGCC 59.415 34.615 0.00 0.00 0.00 4.40
2352 6749 2.672188 TTACGACAAACACAATGCCG 57.328 45.000 0.00 0.00 0.00 5.69
2353 6750 0.236187 TACGACAAACACAATGCCGC 59.764 50.000 0.00 0.00 0.00 6.53
2354 6751 1.009108 CGACAAACACAATGCCGCA 60.009 52.632 0.00 0.00 0.00 5.69
2355 6752 0.593518 CGACAAACACAATGCCGCAA 60.594 50.000 0.00 0.00 0.00 4.85
2356 6753 1.130955 GACAAACACAATGCCGCAAG 58.869 50.000 0.00 0.00 0.00 4.01
2357 6754 0.743688 ACAAACACAATGCCGCAAGA 59.256 45.000 0.00 0.00 43.02 3.02
2358 6755 1.135915 ACAAACACAATGCCGCAAGAA 59.864 42.857 0.00 0.00 43.02 2.52
2359 6756 2.200067 CAAACACAATGCCGCAAGAAA 58.800 42.857 0.00 0.00 43.02 2.52
2360 6757 2.801679 CAAACACAATGCCGCAAGAAAT 59.198 40.909 0.00 0.00 43.02 2.17
2361 6758 2.068837 ACACAATGCCGCAAGAAATG 57.931 45.000 0.00 0.00 43.02 2.32
2373 6770 4.713854 GCAAGAAATGCGTGTCAAATTT 57.286 36.364 0.00 0.00 46.87 1.82
2374 6771 5.081888 GCAAGAAATGCGTGTCAAATTTT 57.918 34.783 0.00 0.00 46.87 1.82
2375 6772 4.899616 GCAAGAAATGCGTGTCAAATTTTG 59.100 37.500 2.59 2.59 46.87 2.44
2376 6773 5.276773 GCAAGAAATGCGTGTCAAATTTTGA 60.277 36.000 7.74 7.74 46.87 2.69
2377 6774 6.703857 CAAGAAATGCGTGTCAAATTTTGAA 58.296 32.000 13.21 0.00 42.15 2.69
2378 6775 6.900568 AGAAATGCGTGTCAAATTTTGAAA 57.099 29.167 13.21 5.65 42.15 2.69
2379 6776 6.936374 AGAAATGCGTGTCAAATTTTGAAAG 58.064 32.000 13.21 8.85 42.15 2.62
2380 6777 4.713854 ATGCGTGTCAAATTTTGAAAGC 57.286 36.364 13.21 16.96 42.15 3.51
2381 6778 3.515630 TGCGTGTCAAATTTTGAAAGCA 58.484 36.364 22.38 22.38 42.15 3.91
2382 6779 4.118410 TGCGTGTCAAATTTTGAAAGCAT 58.882 34.783 22.38 0.00 42.15 3.79
2383 6780 4.208873 TGCGTGTCAAATTTTGAAAGCATC 59.791 37.500 22.38 9.48 42.15 3.91
2384 6781 4.208873 GCGTGTCAAATTTTGAAAGCATCA 59.791 37.500 13.21 3.94 42.15 3.07
2385 6782 5.107375 GCGTGTCAAATTTTGAAAGCATCAT 60.107 36.000 13.21 0.00 42.15 2.45
2386 6783 6.519315 CGTGTCAAATTTTGAAAGCATCATC 58.481 36.000 13.21 0.00 42.15 2.92
2387 6784 6.400303 CGTGTCAAATTTTGAAAGCATCATCC 60.400 38.462 13.21 0.00 42.15 3.51
2388 6785 6.647895 GTGTCAAATTTTGAAAGCATCATCCT 59.352 34.615 13.21 0.00 42.15 3.24
2389 6786 6.869913 TGTCAAATTTTGAAAGCATCATCCTC 59.130 34.615 13.21 0.00 42.15 3.71
2390 6787 7.095270 GTCAAATTTTGAAAGCATCATCCTCT 58.905 34.615 13.21 0.00 42.15 3.69
2391 6788 7.601508 GTCAAATTTTGAAAGCATCATCCTCTT 59.398 33.333 13.21 0.00 42.15 2.85
2392 6789 7.601130 TCAAATTTTGAAAGCATCATCCTCTTG 59.399 33.333 9.36 0.00 38.03 3.02
2393 6790 5.395682 TTTTGAAAGCATCATCCTCTTGG 57.604 39.130 0.00 0.00 38.03 3.61
2415 6812 9.859427 CTTGGATTATATTTTTGTCTTTCTGCA 57.141 29.630 0.00 0.00 0.00 4.41
2416 6813 9.859427 TTGGATTATATTTTTGTCTTTCTGCAG 57.141 29.630 7.63 7.63 0.00 4.41
2417 6814 9.023962 TGGATTATATTTTTGTCTTTCTGCAGT 57.976 29.630 14.67 0.00 0.00 4.40
2418 6815 9.860898 GGATTATATTTTTGTCTTTCTGCAGTT 57.139 29.630 14.67 0.00 0.00 3.16
2421 6818 9.897744 TTATATTTTTGTCTTTCTGCAGTTGAG 57.102 29.630 14.67 10.16 0.00 3.02
2422 6819 5.895636 TTTTTGTCTTTCTGCAGTTGAGA 57.104 34.783 14.67 12.30 0.00 3.27
2423 6820 5.895636 TTTTGTCTTTCTGCAGTTGAGAA 57.104 34.783 14.67 11.79 0.00 2.87
2424 6821 5.895636 TTTGTCTTTCTGCAGTTGAGAAA 57.104 34.783 14.67 16.37 37.15 2.52
2425 6822 4.882671 TGTCTTTCTGCAGTTGAGAAAC 57.117 40.909 14.67 6.21 35.07 2.78
2426 6823 4.260985 TGTCTTTCTGCAGTTGAGAAACA 58.739 39.130 14.67 8.46 35.07 2.83
2427 6824 4.333649 TGTCTTTCTGCAGTTGAGAAACAG 59.666 41.667 14.67 0.00 35.07 3.16
2428 6825 4.572389 GTCTTTCTGCAGTTGAGAAACAGA 59.428 41.667 14.67 0.00 35.07 3.41
2429 6826 4.813161 TCTTTCTGCAGTTGAGAAACAGAG 59.187 41.667 14.67 0.00 38.51 3.35
2430 6827 3.827008 TCTGCAGTTGAGAAACAGAGT 57.173 42.857 14.67 0.00 32.65 3.24
2431 6828 4.937201 TCTGCAGTTGAGAAACAGAGTA 57.063 40.909 14.67 0.00 32.65 2.59
2432 6829 5.276461 TCTGCAGTTGAGAAACAGAGTAA 57.724 39.130 14.67 0.00 32.65 2.24
2433 6830 5.858381 TCTGCAGTTGAGAAACAGAGTAAT 58.142 37.500 14.67 0.00 32.65 1.89
2434 6831 5.698089 TCTGCAGTTGAGAAACAGAGTAATG 59.302 40.000 14.67 0.00 32.65 1.90
2435 6832 5.368145 TGCAGTTGAGAAACAGAGTAATGT 58.632 37.500 0.00 0.00 33.96 2.71
2436 6833 6.521162 TGCAGTTGAGAAACAGAGTAATGTA 58.479 36.000 0.00 0.00 31.70 2.29
2437 6834 7.161404 TGCAGTTGAGAAACAGAGTAATGTAT 58.839 34.615 0.00 0.00 31.70 2.29
2438 6835 7.331934 TGCAGTTGAGAAACAGAGTAATGTATC 59.668 37.037 0.00 0.00 31.70 2.24
2439 6836 7.463383 GCAGTTGAGAAACAGAGTAATGTATCG 60.463 40.741 0.00 0.00 31.70 2.92
2440 6837 7.755373 CAGTTGAGAAACAGAGTAATGTATCGA 59.245 37.037 0.00 0.00 31.70 3.59
2441 6838 8.304596 AGTTGAGAAACAGAGTAATGTATCGAA 58.695 33.333 0.00 0.00 31.70 3.71
2442 6839 8.587950 GTTGAGAAACAGAGTAATGTATCGAAG 58.412 37.037 0.00 0.00 31.70 3.79
2443 6840 8.051901 TGAGAAACAGAGTAATGTATCGAAGA 57.948 34.615 0.00 0.00 33.89 2.87
2444 6841 8.687242 TGAGAAACAGAGTAATGTATCGAAGAT 58.313 33.333 0.00 0.00 34.44 2.40
2445 6842 9.522804 GAGAAACAGAGTAATGTATCGAAGATT 57.477 33.333 0.00 0.00 34.44 2.40
2446 6843 9.307121 AGAAACAGAGTAATGTATCGAAGATTG 57.693 33.333 0.00 0.00 34.44 2.67
2447 6844 9.088512 GAAACAGAGTAATGTATCGAAGATTGT 57.911 33.333 0.00 0.00 34.44 2.71
2449 6846 9.517609 AACAGAGTAATGTATCGAAGATTGTAC 57.482 33.333 0.00 0.00 34.44 2.90
2450 6847 8.904834 ACAGAGTAATGTATCGAAGATTGTACT 58.095 33.333 0.00 0.00 45.12 2.73
2451 6848 9.388346 CAGAGTAATGTATCGAAGATTGTACTC 57.612 37.037 13.43 13.43 45.12 2.59
2452 6849 8.569641 AGAGTAATGTATCGAAGATTGTACTCC 58.430 37.037 15.89 5.29 45.12 3.85
2453 6850 7.659186 AGTAATGTATCGAAGATTGTACTCCC 58.341 38.462 0.00 0.00 45.12 4.30
2454 6851 6.479972 AATGTATCGAAGATTGTACTCCCA 57.520 37.500 0.00 0.00 45.12 4.37
2455 6852 5.515797 TGTATCGAAGATTGTACTCCCAG 57.484 43.478 0.00 0.00 45.12 4.45
2456 6853 5.198207 TGTATCGAAGATTGTACTCCCAGA 58.802 41.667 0.00 0.00 45.12 3.86
2457 6854 5.655090 TGTATCGAAGATTGTACTCCCAGAA 59.345 40.000 0.00 0.00 45.12 3.02
2458 6855 5.677319 ATCGAAGATTGTACTCCCAGAAA 57.323 39.130 0.00 0.00 45.12 2.52
2459 6856 5.677319 TCGAAGATTGTACTCCCAGAAAT 57.323 39.130 0.00 0.00 0.00 2.17
2460 6857 5.419542 TCGAAGATTGTACTCCCAGAAATG 58.580 41.667 0.00 0.00 0.00 2.32
2461 6858 4.572389 CGAAGATTGTACTCCCAGAAATGG 59.428 45.833 0.00 0.00 0.00 3.16
2462 6859 3.891049 AGATTGTACTCCCAGAAATGGC 58.109 45.455 0.00 0.00 0.00 4.40
2463 6860 3.525199 AGATTGTACTCCCAGAAATGGCT 59.475 43.478 0.00 0.00 0.00 4.75
2464 6861 4.721776 AGATTGTACTCCCAGAAATGGCTA 59.278 41.667 0.00 0.00 0.00 3.93
2465 6862 4.487714 TTGTACTCCCAGAAATGGCTAG 57.512 45.455 0.00 0.00 0.00 3.42
2466 6863 3.719871 TGTACTCCCAGAAATGGCTAGA 58.280 45.455 0.00 0.00 0.00 2.43
2467 6864 4.298626 TGTACTCCCAGAAATGGCTAGAT 58.701 43.478 0.00 0.00 0.00 1.98
2468 6865 3.853355 ACTCCCAGAAATGGCTAGATG 57.147 47.619 0.00 0.00 0.00 2.90
2469 6866 2.158696 ACTCCCAGAAATGGCTAGATGC 60.159 50.000 0.00 0.00 41.94 3.91
2470 6867 1.202687 TCCCAGAAATGGCTAGATGCG 60.203 52.381 0.00 0.00 44.05 4.73
2471 6868 1.233019 CCAGAAATGGCTAGATGCGG 58.767 55.000 0.00 0.00 44.05 5.69
2472 6869 1.475751 CCAGAAATGGCTAGATGCGGT 60.476 52.381 0.00 0.00 44.05 5.68
2473 6870 2.292267 CAGAAATGGCTAGATGCGGTT 58.708 47.619 0.00 0.00 44.05 4.44
2474 6871 3.466836 CAGAAATGGCTAGATGCGGTTA 58.533 45.455 0.00 0.00 44.05 2.85
2475 6872 3.496130 CAGAAATGGCTAGATGCGGTTAG 59.504 47.826 0.00 0.00 44.05 2.34
2476 6873 2.550830 AATGGCTAGATGCGGTTAGG 57.449 50.000 0.00 0.00 44.05 2.69
2477 6874 1.717032 ATGGCTAGATGCGGTTAGGA 58.283 50.000 0.00 0.00 44.05 2.94
2478 6875 1.491668 TGGCTAGATGCGGTTAGGAA 58.508 50.000 0.00 0.00 44.05 3.36
2479 6876 1.412710 TGGCTAGATGCGGTTAGGAAG 59.587 52.381 0.00 0.00 44.05 3.46
2480 6877 1.687123 GGCTAGATGCGGTTAGGAAGA 59.313 52.381 0.00 0.00 44.05 2.87
2481 6878 2.300437 GGCTAGATGCGGTTAGGAAGAT 59.700 50.000 0.00 0.00 44.05 2.40
2482 6879 3.321497 GCTAGATGCGGTTAGGAAGATG 58.679 50.000 0.00 0.00 0.00 2.90
2483 6880 3.005897 GCTAGATGCGGTTAGGAAGATGA 59.994 47.826 0.00 0.00 0.00 2.92
2484 6881 4.322349 GCTAGATGCGGTTAGGAAGATGAT 60.322 45.833 0.00 0.00 0.00 2.45
2485 6882 4.000331 AGATGCGGTTAGGAAGATGATG 58.000 45.455 0.00 0.00 0.00 3.07
2486 6883 3.389329 AGATGCGGTTAGGAAGATGATGT 59.611 43.478 0.00 0.00 0.00 3.06
2487 6884 4.588951 AGATGCGGTTAGGAAGATGATGTA 59.411 41.667 0.00 0.00 0.00 2.29
2488 6885 4.054780 TGCGGTTAGGAAGATGATGTAC 57.945 45.455 0.00 0.00 0.00 2.90
2489 6886 3.704566 TGCGGTTAGGAAGATGATGTACT 59.295 43.478 0.00 0.00 0.00 2.73
2490 6887 4.051922 GCGGTTAGGAAGATGATGTACTG 58.948 47.826 0.00 0.00 0.00 2.74
2491 6888 4.202121 GCGGTTAGGAAGATGATGTACTGA 60.202 45.833 0.00 0.00 0.00 3.41
2492 6889 5.509840 GCGGTTAGGAAGATGATGTACTGAT 60.510 44.000 0.00 0.00 0.00 2.90
2493 6890 6.153067 CGGTTAGGAAGATGATGTACTGATC 58.847 44.000 0.00 0.00 0.00 2.92
2494 6891 6.239036 CGGTTAGGAAGATGATGTACTGATCA 60.239 42.308 0.00 0.00 36.78 2.92
2495 6892 7.151308 GGTTAGGAAGATGATGTACTGATCAG 58.849 42.308 21.37 21.37 35.81 2.90
2496 6893 7.201956 GGTTAGGAAGATGATGTACTGATCAGT 60.202 40.741 30.11 30.11 45.02 3.41
2497 6894 6.159299 AGGAAGATGATGTACTGATCAGTG 57.841 41.667 33.76 9.51 42.52 3.66
2498 6895 5.896106 AGGAAGATGATGTACTGATCAGTGA 59.104 40.000 33.76 21.91 42.52 3.41
2499 6896 6.554228 AGGAAGATGATGTACTGATCAGTGAT 59.446 38.462 33.76 25.07 42.52 3.06
2500 6897 6.867816 GGAAGATGATGTACTGATCAGTGATC 59.132 42.308 33.76 29.96 42.52 2.92
2501 6898 6.973460 AGATGATGTACTGATCAGTGATCA 57.027 37.500 33.02 33.02 45.35 2.92
2502 6899 6.747125 AGATGATGTACTGATCAGTGATCAC 58.253 40.000 33.32 27.96 43.11 3.06
2503 6900 4.925068 TGATGTACTGATCAGTGATCACG 58.075 43.478 33.76 24.14 43.11 4.35
2526 7098 5.341407 ACAAACACAACACTTGCAAAAAG 57.659 34.783 0.00 0.00 0.00 2.27
2648 7232 7.588497 TGCTAGTATTCTGATACTCACATGT 57.412 36.000 0.00 0.00 43.94 3.21
2910 7501 1.531149 ACTGCAACGGACAATTTCTCG 59.469 47.619 0.00 0.00 0.00 4.04
3030 7624 8.578308 TTGTTCAATTCAAGAATGATGTGTTC 57.422 30.769 0.00 0.00 34.96 3.18
3120 7719 2.159827 GCCGACGAGTTCAGAAATGAAC 60.160 50.000 12.12 12.12 46.11 3.18
3183 7782 3.466836 CTTCTTGGTTACTGCACTCACA 58.533 45.455 0.00 0.00 0.00 3.58
3277 7876 1.135915 CTCTCATGGTCAAGTCTCCCG 59.864 57.143 0.00 0.00 0.00 5.14
3409 8011 8.519799 TCAAGGTAATTAAAGGAATAGCAAGG 57.480 34.615 0.00 0.00 0.00 3.61
3555 8158 2.517959 TGGAGGAAATGAGCAACAAGG 58.482 47.619 0.00 0.00 0.00 3.61
3577 8180 2.177580 CACTGTCCGCGTTGTTGGT 61.178 57.895 4.92 0.00 0.00 3.67
3592 8195 7.396419 GCGTTGTTGGTACATAGTAAGTAATG 58.604 38.462 0.00 0.00 39.30 1.90
3593 8196 7.396419 CGTTGTTGGTACATAGTAAGTAATGC 58.604 38.462 0.00 0.00 39.30 3.56
3655 8261 8.734386 CAGCTTAACTAATTCTGTTTCTTGGAT 58.266 33.333 2.73 0.00 0.00 3.41
3779 8385 2.618053 AGCGGGTTAAAGATCAGTTCG 58.382 47.619 0.00 0.00 0.00 3.95
4350 8960 5.360144 CCTCTTGATGAATTTTCTGCATCCT 59.640 40.000 0.00 0.00 38.06 3.24
4356 8966 5.571784 TGAATTTTCTGCATCCTAGCTTG 57.428 39.130 0.00 0.00 34.99 4.01
4383 8993 4.506802 GGTTAGTCAATGGGTCTGGAACTT 60.507 45.833 0.00 0.00 0.00 2.66
4502 9186 5.260424 ACACATGTATTAATTCAGGTGGCA 58.740 37.500 30.37 6.51 46.13 4.92
4585 9269 9.575868 TTAGGGTATAAGACATTGTTTGAAACA 57.424 29.630 6.66 6.66 40.21 2.83
4622 9306 0.179179 GGGTCGTAGTACAGCGTGTC 60.179 60.000 0.38 2.70 0.00 3.67
4662 9357 2.236690 CGTCGCTTTGAAATTCTGCTG 58.763 47.619 0.00 0.00 0.00 4.41
4711 9406 6.374613 CCATTATGAGATGCTATGCTGAATGT 59.625 38.462 0.00 0.00 0.00 2.71
4712 9407 6.796705 TTATGAGATGCTATGCTGAATGTG 57.203 37.500 0.00 0.00 0.00 3.21
4768 9468 6.376978 GCAGCATGTTCTGACCATTATATTC 58.623 40.000 4.68 0.00 39.31 1.75
4895 9595 7.823745 ATTATTAGCAAAATACACTCCCCAG 57.176 36.000 0.00 0.00 0.00 4.45
4953 9685 4.610945 CTGCTTTCGAGAAATGGTTTGTT 58.389 39.130 0.00 0.00 0.00 2.83
4959 9691 7.858879 GCTTTCGAGAAATGGTTTGTTAAGTAA 59.141 33.333 0.00 0.00 0.00 2.24
4991 9723 1.686115 GGTATTTGCAGGCCATGTCCT 60.686 52.381 5.01 0.00 36.78 3.85
5021 9753 7.927683 ATGAGAGATCCCTAAATTCTTCAGA 57.072 36.000 0.00 0.00 0.00 3.27
5022 9754 7.358770 TGAGAGATCCCTAAATTCTTCAGAG 57.641 40.000 0.00 0.00 0.00 3.35
5023 9755 6.326064 TGAGAGATCCCTAAATTCTTCAGAGG 59.674 42.308 0.00 0.00 0.00 3.69
5024 9756 5.071653 AGAGATCCCTAAATTCTTCAGAGGC 59.928 44.000 0.00 0.00 0.00 4.70
5026 9758 4.494091 TCCCTAAATTCTTCAGAGGCTG 57.506 45.455 0.00 0.00 0.00 4.85
5027 9759 4.104086 TCCCTAAATTCTTCAGAGGCTGA 58.896 43.478 0.00 0.00 38.87 4.26
5029 9761 4.820716 CCCTAAATTCTTCAGAGGCTGATG 59.179 45.833 0.00 1.34 40.39 3.07
5030 9762 5.435291 CCTAAATTCTTCAGAGGCTGATGT 58.565 41.667 0.00 0.00 40.39 3.06
5031 9763 5.526846 CCTAAATTCTTCAGAGGCTGATGTC 59.473 44.000 0.00 0.00 40.39 3.06
5032 9764 3.557228 ATTCTTCAGAGGCTGATGTCC 57.443 47.619 0.00 0.00 40.39 4.02
5033 9765 1.942776 TCTTCAGAGGCTGATGTCCA 58.057 50.000 0.00 0.00 40.39 4.02
5034 9766 2.475155 TCTTCAGAGGCTGATGTCCAT 58.525 47.619 0.00 0.00 40.39 3.41
5035 9767 2.169978 TCTTCAGAGGCTGATGTCCATG 59.830 50.000 0.00 0.00 40.39 3.66
5036 9768 1.576577 TCAGAGGCTGATGTCCATGT 58.423 50.000 0.00 0.00 35.39 3.21
5037 9769 1.483827 TCAGAGGCTGATGTCCATGTC 59.516 52.381 0.00 0.00 35.39 3.06
5038 9770 0.835941 AGAGGCTGATGTCCATGTCC 59.164 55.000 0.00 0.00 0.00 4.02
5061 9793 2.875296 ACAGGCTCCTTATGTGCAAAA 58.125 42.857 0.00 0.00 35.15 2.44
5062 9794 2.821969 ACAGGCTCCTTATGTGCAAAAG 59.178 45.455 0.00 0.00 35.15 2.27
5069 9801 4.819769 TCCTTATGTGCAAAAGAATTGCC 58.180 39.130 10.34 3.37 44.32 4.52
5072 9804 3.598019 ATGTGCAAAAGAATTGCCGAT 57.402 38.095 10.34 0.46 44.32 4.18
5116 9848 5.662208 ACCTCATCTTTCAGAGTCTGATGAT 59.338 40.000 23.23 23.01 40.39 2.45
5117 9849 6.156602 ACCTCATCTTTCAGAGTCTGATGATT 59.843 38.462 23.23 10.70 40.39 2.57
5159 9891 7.651808 AGTGTTGATTTCTCATGGTACTTTTG 58.348 34.615 0.00 0.00 0.00 2.44
5163 9895 8.564574 GTTGATTTCTCATGGTACTTTTGTGTA 58.435 33.333 0.00 0.00 0.00 2.90
5164 9896 8.862325 TGATTTCTCATGGTACTTTTGTGTAT 57.138 30.769 0.00 0.00 0.00 2.29
5165 9897 8.946085 TGATTTCTCATGGTACTTTTGTGTATC 58.054 33.333 0.00 0.00 0.00 2.24
5166 9898 7.681939 TTTCTCATGGTACTTTTGTGTATCC 57.318 36.000 0.00 0.00 0.00 2.59
5167 9899 6.367374 TCTCATGGTACTTTTGTGTATCCA 57.633 37.500 0.00 0.00 32.52 3.41
5168 9900 6.406370 TCTCATGGTACTTTTGTGTATCCAG 58.594 40.000 0.00 0.00 31.97 3.86
5169 9901 6.013725 TCTCATGGTACTTTTGTGTATCCAGT 60.014 38.462 0.00 0.00 31.97 4.00
5170 9902 5.937540 TCATGGTACTTTTGTGTATCCAGTG 59.062 40.000 0.00 0.00 31.97 3.66
5171 9903 5.298989 TGGTACTTTTGTGTATCCAGTGT 57.701 39.130 0.00 0.00 0.00 3.55
5172 9904 5.302360 TGGTACTTTTGTGTATCCAGTGTC 58.698 41.667 0.00 0.00 0.00 3.67
5173 9905 5.163290 TGGTACTTTTGTGTATCCAGTGTCA 60.163 40.000 0.00 0.00 0.00 3.58
5174 9906 5.408604 GGTACTTTTGTGTATCCAGTGTCAG 59.591 44.000 0.00 0.00 0.00 3.51
5175 9907 3.815401 ACTTTTGTGTATCCAGTGTCAGC 59.185 43.478 0.00 0.00 0.00 4.26
5176 9908 2.472695 TTGTGTATCCAGTGTCAGCC 57.527 50.000 0.00 0.00 0.00 4.85
5177 9909 0.246360 TGTGTATCCAGTGTCAGCCG 59.754 55.000 0.00 0.00 0.00 5.52
5178 9910 0.460284 GTGTATCCAGTGTCAGCCGG 60.460 60.000 0.00 0.00 0.00 6.13
5179 9911 0.902984 TGTATCCAGTGTCAGCCGGT 60.903 55.000 1.90 0.00 0.00 5.28
5180 9912 0.460284 GTATCCAGTGTCAGCCGGTG 60.460 60.000 1.90 0.00 0.00 4.94
5181 9913 1.613317 TATCCAGTGTCAGCCGGTGG 61.613 60.000 1.90 0.00 0.00 4.61
5193 9925 4.379243 CGGTGGCTGAGAAGGCGT 62.379 66.667 0.00 0.00 37.15 5.68
5194 9926 2.978824 GGTGGCTGAGAAGGCGTA 59.021 61.111 0.00 0.00 37.15 4.42
5195 9927 1.522569 GGTGGCTGAGAAGGCGTAT 59.477 57.895 0.00 0.00 37.15 3.06
5196 9928 0.750850 GGTGGCTGAGAAGGCGTATA 59.249 55.000 0.00 0.00 37.15 1.47
5197 9929 1.138266 GGTGGCTGAGAAGGCGTATAA 59.862 52.381 0.00 0.00 37.15 0.98
5198 9930 2.419574 GGTGGCTGAGAAGGCGTATAAA 60.420 50.000 0.00 0.00 37.15 1.40
5199 9931 3.467803 GTGGCTGAGAAGGCGTATAAAT 58.532 45.455 0.00 0.00 37.15 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 46 7.664082 TCACATTTTCTGCTTTTGTTTTTCA 57.336 28.000 0.00 0.00 0.00 2.69
140 145 2.729862 GCGACTCGCGTCAACAGT 60.730 61.111 7.85 0.35 44.55 3.55
227 1349 0.743345 AAGATAAAGGCGGCGGTGAC 60.743 55.000 9.78 0.00 0.00 3.67
228 1350 0.461339 GAAGATAAAGGCGGCGGTGA 60.461 55.000 9.78 0.00 0.00 4.02
236 1358 4.130857 GGTAAGGCTGAGAAGATAAAGGC 58.869 47.826 0.00 0.00 35.57 4.35
237 1359 5.104735 ACAGGTAAGGCTGAGAAGATAAAGG 60.105 44.000 0.00 0.00 0.00 3.11
240 1362 4.383118 GCACAGGTAAGGCTGAGAAGATAA 60.383 45.833 0.00 0.00 0.00 1.75
241 1363 3.133003 GCACAGGTAAGGCTGAGAAGATA 59.867 47.826 0.00 0.00 0.00 1.98
244 1366 1.677217 GGCACAGGTAAGGCTGAGAAG 60.677 57.143 0.00 0.00 0.00 2.85
246 1368 0.545309 AGGCACAGGTAAGGCTGAGA 60.545 55.000 0.00 0.00 39.39 3.27
247 1369 0.107945 GAGGCACAGGTAAGGCTGAG 60.108 60.000 0.00 0.00 41.09 3.35
249 1371 1.078143 GGAGGCACAGGTAAGGCTG 60.078 63.158 0.00 0.00 41.09 4.85
276 1398 2.187946 GATGGAGTGCCGGACTGG 59.812 66.667 5.05 0.00 42.50 4.00
312 1434 2.418083 GCCAAGGGAAATCAGCGGG 61.418 63.158 0.00 0.00 0.00 6.13
440 1563 4.295119 GCTCGTGGTGACGGTGGT 62.295 66.667 0.00 0.00 46.11 4.16
495 1618 6.663734 AGAACAGAAAAGGGGATAATGGTAG 58.336 40.000 0.00 0.00 0.00 3.18
587 1744 1.200020 AGCAGGCTACAACAATTTCGC 59.800 47.619 0.00 0.00 0.00 4.70
593 1750 2.559668 ACTACGTAGCAGGCTACAACAA 59.440 45.455 25.91 10.62 46.69 2.83
594 1751 2.165167 ACTACGTAGCAGGCTACAACA 58.835 47.619 25.91 12.36 46.69 3.33
596 1753 3.877559 TCTACTACGTAGCAGGCTACAA 58.122 45.455 25.91 14.97 46.69 2.41
598 1755 4.125703 TCTTCTACTACGTAGCAGGCTAC 58.874 47.826 22.40 19.03 43.87 3.58
610 1767 6.426633 GGAACGGAGGTAGTATCTTCTACTAC 59.573 46.154 12.14 12.14 45.47 2.73
612 1769 5.104193 TGGAACGGAGGTAGTATCTTCTACT 60.104 44.000 0.00 0.00 39.85 2.57
613 1770 5.128919 TGGAACGGAGGTAGTATCTTCTAC 58.871 45.833 0.00 0.00 39.40 2.59
614 1771 5.378230 TGGAACGGAGGTAGTATCTTCTA 57.622 43.478 0.00 0.00 0.00 2.10
615 1772 4.246712 TGGAACGGAGGTAGTATCTTCT 57.753 45.455 0.00 0.00 0.00 2.85
616 1773 4.996788 TTGGAACGGAGGTAGTATCTTC 57.003 45.455 0.00 0.00 0.00 2.87
617 1774 5.952347 ATTTGGAACGGAGGTAGTATCTT 57.048 39.130 0.00 0.00 0.00 2.40
618 1775 5.952347 AATTTGGAACGGAGGTAGTATCT 57.048 39.130 0.00 0.00 0.00 1.98
619 1776 6.814043 AGTAATTTGGAACGGAGGTAGTATC 58.186 40.000 0.00 0.00 0.00 2.24
620 1777 6.460676 CGAGTAATTTGGAACGGAGGTAGTAT 60.461 42.308 0.00 0.00 0.00 2.12
621 1778 5.163622 CGAGTAATTTGGAACGGAGGTAGTA 60.164 44.000 0.00 0.00 0.00 1.82
622 1779 4.381292 CGAGTAATTTGGAACGGAGGTAGT 60.381 45.833 0.00 0.00 0.00 2.73
623 1780 4.110482 CGAGTAATTTGGAACGGAGGTAG 58.890 47.826 0.00 0.00 0.00 3.18
624 1781 3.511146 ACGAGTAATTTGGAACGGAGGTA 59.489 43.478 0.00 0.00 0.00 3.08
627 1784 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
628 1785 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
630 1787 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
631 1788 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
632 1789 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
635 1792 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
637 1794 6.479660 TCAAACTAAAACCACGACGAGTAATT 59.520 34.615 0.00 1.08 0.00 1.40
638 1795 5.984926 TCAAACTAAAACCACGACGAGTAAT 59.015 36.000 0.00 0.00 0.00 1.89
639 1796 5.347342 TCAAACTAAAACCACGACGAGTAA 58.653 37.500 0.00 0.00 0.00 2.24
640 1797 4.930963 TCAAACTAAAACCACGACGAGTA 58.069 39.130 0.00 0.00 0.00 2.59
642 1799 4.269363 AGTTCAAACTAAAACCACGACGAG 59.731 41.667 0.00 0.00 37.52 4.18
644 1801 4.525411 AGTTCAAACTAAAACCACGACG 57.475 40.909 0.00 0.00 37.52 5.12
654 1811 5.809562 TCGTCGTGGTTTTAGTTCAAACTAA 59.190 36.000 10.53 10.53 46.58 2.24
657 1814 4.033243 ACTCGTCGTGGTTTTAGTTCAAAC 59.967 41.667 0.00 0.00 36.12 2.93
658 1815 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
659 1816 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
660 1817 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
662 1819 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
663 1820 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
664 1821 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
665 1822 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
667 1824 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
668 1825 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
669 1826 3.389925 TTCCAAATTACTCGTCGTGGT 57.610 42.857 0.00 0.00 0.00 4.16
670 1827 3.063452 CCATTCCAAATTACTCGTCGTGG 59.937 47.826 0.00 0.00 0.00 4.94
671 1828 3.930229 TCCATTCCAAATTACTCGTCGTG 59.070 43.478 0.00 0.00 0.00 4.35
673 1830 3.555956 CCTCCATTCCAAATTACTCGTCG 59.444 47.826 0.00 0.00 0.00 5.12
674 1831 3.877508 CCCTCCATTCCAAATTACTCGTC 59.122 47.826 0.00 0.00 0.00 4.20
676 1833 4.130118 CTCCCTCCATTCCAAATTACTCG 58.870 47.826 0.00 0.00 0.00 4.18
677 1834 5.117406 ACTCCCTCCATTCCAAATTACTC 57.883 43.478 0.00 0.00 0.00 2.59
678 1835 6.848562 ATACTCCCTCCATTCCAAATTACT 57.151 37.500 0.00 0.00 0.00 2.24
679 1836 7.780271 AGAAATACTCCCTCCATTCCAAATTAC 59.220 37.037 0.00 0.00 0.00 1.89
680 1837 7.882755 AGAAATACTCCCTCCATTCCAAATTA 58.117 34.615 0.00 0.00 0.00 1.40
684 1841 5.796502 AAGAAATACTCCCTCCATTCCAA 57.203 39.130 0.00 0.00 0.00 3.53
686 1843 5.358160 CACAAAGAAATACTCCCTCCATTCC 59.642 44.000 0.00 0.00 0.00 3.01
687 1844 5.946377 ACACAAAGAAATACTCCCTCCATTC 59.054 40.000 0.00 0.00 0.00 2.67
688 1845 5.711976 CACACAAAGAAATACTCCCTCCATT 59.288 40.000 0.00 0.00 0.00 3.16
689 1846 5.014123 TCACACAAAGAAATACTCCCTCCAT 59.986 40.000 0.00 0.00 0.00 3.41
690 1847 4.349636 TCACACAAAGAAATACTCCCTCCA 59.650 41.667 0.00 0.00 0.00 3.86
691 1848 4.906618 TCACACAAAGAAATACTCCCTCC 58.093 43.478 0.00 0.00 0.00 4.30
692 1849 5.998363 AGTTCACACAAAGAAATACTCCCTC 59.002 40.000 0.00 0.00 0.00 4.30
693 1850 5.941788 AGTTCACACAAAGAAATACTCCCT 58.058 37.500 0.00 0.00 0.00 4.20
694 1851 5.181433 GGAGTTCACACAAAGAAATACTCCC 59.819 44.000 0.00 0.00 33.23 4.30
696 1853 6.659776 GTGGAGTTCACACAAAGAAATACTC 58.340 40.000 0.00 0.00 45.39 2.59
697 1854 6.619801 GTGGAGTTCACACAAAGAAATACT 57.380 37.500 0.00 0.00 45.39 2.12
771 1934 2.002586 GTCTCGGATGACCACACAATG 58.997 52.381 0.00 0.00 35.59 2.82
786 1949 2.084610 TCACATTTGCAGGAGTCTCG 57.915 50.000 0.00 0.00 0.00 4.04
821 1984 5.925969 ACTTCTGTGTGGTTTTTGTTGAAAG 59.074 36.000 0.00 0.00 0.00 2.62
859 2022 1.185618 TCGGTCTTCTGTGTGGAGGG 61.186 60.000 0.00 0.00 0.00 4.30
864 2027 0.389166 GAGCCTCGGTCTTCTGTGTG 60.389 60.000 0.00 0.00 0.00 3.82
867 2030 2.344203 CGGAGCCTCGGTCTTCTGT 61.344 63.158 0.00 0.00 0.00 3.41
868 2031 1.388065 ATCGGAGCCTCGGTCTTCTG 61.388 60.000 0.00 0.00 0.00 3.02
869 2032 1.076632 ATCGGAGCCTCGGTCTTCT 60.077 57.895 0.00 0.00 0.00 2.85
870 2033 1.360911 GATCGGAGCCTCGGTCTTC 59.639 63.158 0.00 0.00 37.31 2.87
871 2034 0.970937 TTGATCGGAGCCTCGGTCTT 60.971 55.000 10.26 0.00 40.58 3.01
872 2035 1.379977 TTGATCGGAGCCTCGGTCT 60.380 57.895 10.26 0.00 40.58 3.85
874 2037 3.082579 GCTTGATCGGAGCCTCGGT 62.083 63.158 9.17 0.00 34.06 4.69
900 2076 2.295885 CAGCCAAGAAGATGCTTAGGG 58.704 52.381 0.00 0.00 31.77 3.53
903 2079 2.795231 AGCAGCCAAGAAGATGCTTA 57.205 45.000 0.00 0.00 46.46 3.09
914 2090 0.478072 TTTTCAGAGGGAGCAGCCAA 59.522 50.000 0.00 0.00 38.95 4.52
936 2112 5.582953 TGTGAAGATCAAATGAAGGGGATT 58.417 37.500 0.00 0.00 0.00 3.01
942 2118 5.366829 TGTGCTGTGAAGATCAAATGAAG 57.633 39.130 0.00 0.00 0.00 3.02
944 2120 3.754850 CCTGTGCTGTGAAGATCAAATGA 59.245 43.478 0.00 0.00 0.00 2.57
946 2122 2.490903 GCCTGTGCTGTGAAGATCAAAT 59.509 45.455 0.00 0.00 33.53 2.32
966 2142 1.077123 CTCTCGCATATGCCTCATGC 58.923 55.000 21.77 0.00 44.31 4.06
986 5200 2.027653 GGAGCCATACCTATTCAGCCTC 60.028 54.545 0.00 0.00 0.00 4.70
1021 5241 3.260380 AGACAAATCAGTGACAGGAGGAG 59.740 47.826 0.00 0.00 0.00 3.69
1093 5313 1.806461 TTGTCCGAGACGAGCTTGCT 61.806 55.000 0.00 0.00 34.95 3.91
1094 5314 0.737715 ATTGTCCGAGACGAGCTTGC 60.738 55.000 0.00 0.00 34.95 4.01
1263 5483 1.219522 GGTCGGAGTTGTTGGTCACG 61.220 60.000 0.00 0.00 0.00 4.35
1288 5508 1.298014 GGCCTTGGGAGTCAGACAG 59.702 63.158 2.66 0.00 0.00 3.51
1407 5627 2.461300 AGCTCTGCCATAGGTCTGTA 57.539 50.000 0.00 0.00 0.00 2.74
1414 5634 2.492012 GTGATGGAAGCTCTGCCATAG 58.508 52.381 9.35 0.00 44.60 2.23
1774 5998 1.265905 CCACGCCAGAAACCTAAACAC 59.734 52.381 0.00 0.00 0.00 3.32
1918 6142 3.420893 CATTAGGCTCAAACCCACTGAA 58.579 45.455 0.00 0.00 0.00 3.02
1936 6160 4.263506 CCCTCTGGAGAAGTTAACACCATT 60.264 45.833 8.61 0.00 0.00 3.16
2082 6306 1.024271 AATCGCAATTACGGCTGCAT 58.976 45.000 0.50 0.00 38.52 3.96
2228 6458 7.612065 TGTATACCTGTTGAACTGGCTATAT 57.388 36.000 19.46 12.71 40.43 0.86
2230 6460 5.950544 TGTATACCTGTTGAACTGGCTAT 57.049 39.130 19.46 16.79 40.43 2.97
2352 6749 5.276773 TCAAAATTTGACACGCATTTCTTGC 60.277 36.000 4.03 0.00 40.45 4.01
2353 6750 6.271396 TCAAAATTTGACACGCATTTCTTG 57.729 33.333 4.03 0.00 34.08 3.02
2354 6751 6.900568 TTCAAAATTTGACACGCATTTCTT 57.099 29.167 8.06 0.00 39.87 2.52
2355 6752 6.509997 GCTTTCAAAATTTGACACGCATTTCT 60.510 34.615 8.06 0.00 39.87 2.52
2356 6753 5.616785 GCTTTCAAAATTTGACACGCATTTC 59.383 36.000 8.06 0.00 39.87 2.17
2357 6754 5.064452 TGCTTTCAAAATTTGACACGCATTT 59.936 32.000 16.49 0.00 39.87 2.32
2358 6755 4.569966 TGCTTTCAAAATTTGACACGCATT 59.430 33.333 16.49 0.00 39.87 3.56
2359 6756 4.118410 TGCTTTCAAAATTTGACACGCAT 58.882 34.783 16.49 0.00 39.87 4.73
2360 6757 3.515630 TGCTTTCAAAATTTGACACGCA 58.484 36.364 16.49 16.49 39.87 5.24
2361 6758 4.208873 TGATGCTTTCAAAATTTGACACGC 59.791 37.500 8.06 11.11 39.87 5.34
2362 6759 5.886715 TGATGCTTTCAAAATTTGACACG 57.113 34.783 8.06 1.32 39.87 4.49
2363 6760 6.647895 AGGATGATGCTTTCAAAATTTGACAC 59.352 34.615 8.06 1.78 39.87 3.67
2364 6761 6.761312 AGGATGATGCTTTCAAAATTTGACA 58.239 32.000 8.06 4.05 39.87 3.58
2365 6762 7.095270 AGAGGATGATGCTTTCAAAATTTGAC 58.905 34.615 8.06 0.00 39.87 3.18
2366 6763 7.235935 AGAGGATGATGCTTTCAAAATTTGA 57.764 32.000 4.03 4.03 38.03 2.69
2367 6764 7.148474 CCAAGAGGATGATGCTTTCAAAATTTG 60.148 37.037 0.00 0.00 38.03 2.32
2368 6765 6.877322 CCAAGAGGATGATGCTTTCAAAATTT 59.123 34.615 0.00 0.00 38.03 1.82
2369 6766 6.211986 TCCAAGAGGATGATGCTTTCAAAATT 59.788 34.615 0.00 0.00 39.61 1.82
2370 6767 5.718130 TCCAAGAGGATGATGCTTTCAAAAT 59.282 36.000 0.00 0.00 39.61 1.82
2371 6768 5.078949 TCCAAGAGGATGATGCTTTCAAAA 58.921 37.500 0.00 0.00 39.61 2.44
2372 6769 4.665451 TCCAAGAGGATGATGCTTTCAAA 58.335 39.130 0.00 0.00 39.61 2.69
2373 6770 4.305539 TCCAAGAGGATGATGCTTTCAA 57.694 40.909 0.00 0.00 39.61 2.69
2389 6786 9.859427 TGCAGAAAGACAAAAATATAATCCAAG 57.141 29.630 0.00 0.00 0.00 3.61
2390 6787 9.859427 CTGCAGAAAGACAAAAATATAATCCAA 57.141 29.630 8.42 0.00 0.00 3.53
2391 6788 9.023962 ACTGCAGAAAGACAAAAATATAATCCA 57.976 29.630 23.35 0.00 0.00 3.41
2392 6789 9.860898 AACTGCAGAAAGACAAAAATATAATCC 57.139 29.630 23.35 0.00 0.00 3.01
2395 6792 9.897744 CTCAACTGCAGAAAGACAAAAATATAA 57.102 29.630 23.35 0.00 0.00 0.98
2396 6793 9.283768 TCTCAACTGCAGAAAGACAAAAATATA 57.716 29.630 23.35 0.00 0.00 0.86
2397 6794 8.169977 TCTCAACTGCAGAAAGACAAAAATAT 57.830 30.769 23.35 0.00 0.00 1.28
2398 6795 7.566760 TCTCAACTGCAGAAAGACAAAAATA 57.433 32.000 23.35 0.00 0.00 1.40
2399 6796 6.455360 TCTCAACTGCAGAAAGACAAAAAT 57.545 33.333 23.35 0.00 0.00 1.82
2400 6797 5.895636 TCTCAACTGCAGAAAGACAAAAA 57.104 34.783 23.35 0.00 0.00 1.94
2401 6798 5.895636 TTCTCAACTGCAGAAAGACAAAA 57.104 34.783 23.35 2.14 0.00 2.44
2402 6799 5.182950 TGTTTCTCAACTGCAGAAAGACAAA 59.817 36.000 23.35 11.59 39.90 2.83
2403 6800 4.699735 TGTTTCTCAACTGCAGAAAGACAA 59.300 37.500 23.35 12.46 39.90 3.18
2404 6801 4.260985 TGTTTCTCAACTGCAGAAAGACA 58.739 39.130 23.35 12.04 39.90 3.41
2405 6802 4.572389 TCTGTTTCTCAACTGCAGAAAGAC 59.428 41.667 23.35 9.64 39.90 3.01
2406 6803 4.769688 TCTGTTTCTCAACTGCAGAAAGA 58.230 39.130 23.35 16.09 39.90 2.52
2407 6804 4.574013 ACTCTGTTTCTCAACTGCAGAAAG 59.426 41.667 23.35 13.99 39.90 2.62
2408 6805 4.517285 ACTCTGTTTCTCAACTGCAGAAA 58.483 39.130 23.35 7.39 37.50 2.52
2409 6806 4.142609 ACTCTGTTTCTCAACTGCAGAA 57.857 40.909 23.35 0.00 36.02 3.02
2410 6807 3.827008 ACTCTGTTTCTCAACTGCAGA 57.173 42.857 23.35 0.00 35.29 4.26
2411 6808 5.468072 ACATTACTCTGTTTCTCAACTGCAG 59.532 40.000 13.48 13.48 33.58 4.41
2412 6809 5.368145 ACATTACTCTGTTTCTCAACTGCA 58.632 37.500 0.00 0.00 33.58 4.41
2413 6810 5.931441 ACATTACTCTGTTTCTCAACTGC 57.069 39.130 0.00 0.00 33.58 4.40
2414 6811 7.755373 TCGATACATTACTCTGTTTCTCAACTG 59.245 37.037 0.00 0.00 33.58 3.16
2415 6812 7.827701 TCGATACATTACTCTGTTTCTCAACT 58.172 34.615 0.00 0.00 33.58 3.16
2416 6813 8.462143 TTCGATACATTACTCTGTTTCTCAAC 57.538 34.615 0.00 0.00 0.00 3.18
2417 6814 8.520351 TCTTCGATACATTACTCTGTTTCTCAA 58.480 33.333 0.00 0.00 0.00 3.02
2418 6815 8.051901 TCTTCGATACATTACTCTGTTTCTCA 57.948 34.615 0.00 0.00 0.00 3.27
2419 6816 9.522804 AATCTTCGATACATTACTCTGTTTCTC 57.477 33.333 0.00 0.00 0.00 2.87
2420 6817 9.307121 CAATCTTCGATACATTACTCTGTTTCT 57.693 33.333 0.00 0.00 0.00 2.52
2421 6818 9.088512 ACAATCTTCGATACATTACTCTGTTTC 57.911 33.333 0.00 0.00 0.00 2.78
2423 6820 9.517609 GTACAATCTTCGATACATTACTCTGTT 57.482 33.333 0.00 0.00 0.00 3.16
2424 6821 8.904834 AGTACAATCTTCGATACATTACTCTGT 58.095 33.333 0.00 0.00 0.00 3.41
2425 6822 9.388346 GAGTACAATCTTCGATACATTACTCTG 57.612 37.037 0.00 0.00 0.00 3.35
2426 6823 8.569641 GGAGTACAATCTTCGATACATTACTCT 58.430 37.037 14.88 0.00 32.25 3.24
2427 6824 7.808856 GGGAGTACAATCTTCGATACATTACTC 59.191 40.741 0.00 10.11 0.00 2.59
2428 6825 7.287005 TGGGAGTACAATCTTCGATACATTACT 59.713 37.037 0.00 0.00 0.00 2.24
2429 6826 7.431249 TGGGAGTACAATCTTCGATACATTAC 58.569 38.462 0.00 0.00 0.00 1.89
2430 6827 7.504574 TCTGGGAGTACAATCTTCGATACATTA 59.495 37.037 0.00 0.00 0.00 1.90
2431 6828 6.323996 TCTGGGAGTACAATCTTCGATACATT 59.676 38.462 0.00 0.00 0.00 2.71
2432 6829 5.833667 TCTGGGAGTACAATCTTCGATACAT 59.166 40.000 0.00 0.00 0.00 2.29
2433 6830 5.198207 TCTGGGAGTACAATCTTCGATACA 58.802 41.667 0.00 0.00 0.00 2.29
2434 6831 5.769484 TCTGGGAGTACAATCTTCGATAC 57.231 43.478 0.00 0.00 0.00 2.24
2435 6832 6.785337 TTTCTGGGAGTACAATCTTCGATA 57.215 37.500 0.00 0.00 0.00 2.92
2436 6833 5.677319 TTTCTGGGAGTACAATCTTCGAT 57.323 39.130 0.00 0.00 0.00 3.59
2437 6834 5.419542 CATTTCTGGGAGTACAATCTTCGA 58.580 41.667 0.00 0.00 0.00 3.71
2438 6835 4.572389 CCATTTCTGGGAGTACAATCTTCG 59.428 45.833 0.00 0.00 39.04 3.79
2439 6836 4.336713 GCCATTTCTGGGAGTACAATCTTC 59.663 45.833 0.00 0.00 43.36 2.87
2440 6837 4.018050 AGCCATTTCTGGGAGTACAATCTT 60.018 41.667 0.00 0.00 43.36 2.40
2441 6838 3.525199 AGCCATTTCTGGGAGTACAATCT 59.475 43.478 0.00 0.00 43.36 2.40
2442 6839 3.891049 AGCCATTTCTGGGAGTACAATC 58.109 45.455 0.00 0.00 43.36 2.67
2443 6840 4.721776 TCTAGCCATTTCTGGGAGTACAAT 59.278 41.667 0.00 0.00 43.36 2.71
2444 6841 4.101114 TCTAGCCATTTCTGGGAGTACAA 58.899 43.478 0.00 0.00 43.36 2.41
2445 6842 3.719871 TCTAGCCATTTCTGGGAGTACA 58.280 45.455 0.00 0.00 43.36 2.90
2446 6843 4.636249 CATCTAGCCATTTCTGGGAGTAC 58.364 47.826 0.00 0.00 43.36 2.73
2447 6844 3.071602 GCATCTAGCCATTTCTGGGAGTA 59.928 47.826 0.00 0.00 43.36 2.59
2448 6845 2.158696 GCATCTAGCCATTTCTGGGAGT 60.159 50.000 0.00 0.00 43.36 3.85
2449 6846 2.502295 GCATCTAGCCATTTCTGGGAG 58.498 52.381 0.00 0.00 43.36 4.30
2450 6847 1.202687 CGCATCTAGCCATTTCTGGGA 60.203 52.381 0.00 0.00 43.36 4.37
2451 6848 1.233019 CGCATCTAGCCATTTCTGGG 58.767 55.000 0.00 0.00 43.36 4.45
2452 6849 1.233019 CCGCATCTAGCCATTTCTGG 58.767 55.000 0.00 0.00 46.17 3.86
2453 6850 1.959042 ACCGCATCTAGCCATTTCTG 58.041 50.000 0.00 0.00 41.38 3.02
2454 6851 2.717639 AACCGCATCTAGCCATTTCT 57.282 45.000 0.00 0.00 41.38 2.52
2455 6852 2.808543 CCTAACCGCATCTAGCCATTTC 59.191 50.000 0.00 0.00 41.38 2.17
2456 6853 2.438021 TCCTAACCGCATCTAGCCATTT 59.562 45.455 0.00 0.00 41.38 2.32
2457 6854 2.047061 TCCTAACCGCATCTAGCCATT 58.953 47.619 0.00 0.00 41.38 3.16
2458 6855 1.717032 TCCTAACCGCATCTAGCCAT 58.283 50.000 0.00 0.00 41.38 4.40
2459 6856 1.412710 CTTCCTAACCGCATCTAGCCA 59.587 52.381 0.00 0.00 41.38 4.75
2460 6857 1.687123 TCTTCCTAACCGCATCTAGCC 59.313 52.381 0.00 0.00 41.38 3.93
2461 6858 3.005897 TCATCTTCCTAACCGCATCTAGC 59.994 47.826 0.00 0.00 40.87 3.42
2462 6859 4.855715 TCATCTTCCTAACCGCATCTAG 57.144 45.455 0.00 0.00 0.00 2.43
2463 6860 4.588951 ACATCATCTTCCTAACCGCATCTA 59.411 41.667 0.00 0.00 0.00 1.98
2464 6861 3.389329 ACATCATCTTCCTAACCGCATCT 59.611 43.478 0.00 0.00 0.00 2.90
2465 6862 3.733337 ACATCATCTTCCTAACCGCATC 58.267 45.455 0.00 0.00 0.00 3.91
2466 6863 3.845781 ACATCATCTTCCTAACCGCAT 57.154 42.857 0.00 0.00 0.00 4.73
2467 6864 3.704566 AGTACATCATCTTCCTAACCGCA 59.295 43.478 0.00 0.00 0.00 5.69
2468 6865 4.051922 CAGTACATCATCTTCCTAACCGC 58.948 47.826 0.00 0.00 0.00 5.68
2469 6866 5.515797 TCAGTACATCATCTTCCTAACCG 57.484 43.478 0.00 0.00 0.00 4.44
2470 6867 7.055667 TGATCAGTACATCATCTTCCTAACC 57.944 40.000 0.00 0.00 0.00 2.85
2471 6868 7.651304 CACTGATCAGTACATCATCTTCCTAAC 59.349 40.741 27.44 0.00 40.20 2.34
2472 6869 7.561356 TCACTGATCAGTACATCATCTTCCTAA 59.439 37.037 27.44 0.00 40.20 2.69
2473 6870 7.062957 TCACTGATCAGTACATCATCTTCCTA 58.937 38.462 27.44 0.00 40.20 2.94
2474 6871 5.896106 TCACTGATCAGTACATCATCTTCCT 59.104 40.000 27.44 0.00 40.20 3.36
2475 6872 6.154203 TCACTGATCAGTACATCATCTTCC 57.846 41.667 27.44 0.00 40.20 3.46
2476 6873 7.432059 TGATCACTGATCAGTACATCATCTTC 58.568 38.462 29.38 17.16 43.11 2.87
2477 6874 7.357429 TGATCACTGATCAGTACATCATCTT 57.643 36.000 29.38 11.49 43.11 2.40
2478 6875 6.973460 TGATCACTGATCAGTACATCATCT 57.027 37.500 29.38 12.52 43.11 2.90
2489 6886 3.740832 GTGTTTGTCGTGATCACTGATCA 59.259 43.478 22.95 16.44 45.35 2.92
2490 6887 3.740832 TGTGTTTGTCGTGATCACTGATC 59.259 43.478 22.95 11.59 39.31 2.92
2491 6888 3.727726 TGTGTTTGTCGTGATCACTGAT 58.272 40.909 22.95 0.00 0.00 2.90
2492 6889 3.172229 TGTGTTTGTCGTGATCACTGA 57.828 42.857 22.95 17.93 0.00 3.41
2493 6890 3.063316 TGTTGTGTTTGTCGTGATCACTG 59.937 43.478 22.95 16.06 0.00 3.66
2494 6891 3.063452 GTGTTGTGTTTGTCGTGATCACT 59.937 43.478 22.95 0.00 0.00 3.41
2495 6892 3.063452 AGTGTTGTGTTTGTCGTGATCAC 59.937 43.478 16.21 16.21 0.00 3.06
2496 6893 3.266636 AGTGTTGTGTTTGTCGTGATCA 58.733 40.909 0.00 0.00 0.00 2.92
2497 6894 3.944422 AGTGTTGTGTTTGTCGTGATC 57.056 42.857 0.00 0.00 0.00 2.92
2498 6895 3.730662 GCAAGTGTTGTGTTTGTCGTGAT 60.731 43.478 0.00 0.00 0.00 3.06
2499 6896 2.413502 GCAAGTGTTGTGTTTGTCGTGA 60.414 45.455 0.00 0.00 0.00 4.35
2500 6897 1.910819 GCAAGTGTTGTGTTTGTCGTG 59.089 47.619 0.00 0.00 0.00 4.35
2501 6898 1.537638 TGCAAGTGTTGTGTTTGTCGT 59.462 42.857 0.00 0.00 0.00 4.34
2502 6899 2.254918 TGCAAGTGTTGTGTTTGTCG 57.745 45.000 0.00 0.00 0.00 4.35
2503 6900 4.981389 TTTTGCAAGTGTTGTGTTTGTC 57.019 36.364 0.00 0.00 0.00 3.18
2648 7232 2.940971 GCATATCCACACAAGGCTGACA 60.941 50.000 0.00 0.00 0.00 3.58
2799 7390 1.693467 TCGAGTGTTGTCGTGCATAC 58.307 50.000 0.00 0.00 40.93 2.39
2910 7501 0.535335 TCCCGAGCATGTTGTAGTCC 59.465 55.000 0.00 0.00 0.00 3.85
3030 7624 3.308188 CCACCTTGTAACCTCCCCTAAAG 60.308 52.174 0.00 0.00 0.00 1.85
3120 7719 2.997986 GCAATTTGGCAATCAGAACCAG 59.002 45.455 0.00 0.00 34.28 4.00
3409 8011 1.564348 TGGTGGAGATAAAGAAGCCCC 59.436 52.381 0.00 0.00 0.00 5.80
3577 8180 6.587273 TGGTGCATGCATTACTTACTATGTA 58.413 36.000 25.64 0.00 0.00 2.29
3592 8195 0.890683 AAGCTTTACCTGGTGCATGC 59.109 50.000 11.82 11.82 0.00 4.06
3593 8196 4.009675 TCTTAAGCTTTACCTGGTGCATG 58.990 43.478 10.23 0.00 0.00 4.06
3644 8249 5.984926 GCTGTTTGAATCAATCCAAGAAACA 59.015 36.000 0.00 0.00 32.49 2.83
3655 8261 4.277174 ACATGTAACCGCTGTTTGAATCAA 59.723 37.500 0.00 0.00 35.87 2.57
3779 8385 1.115467 AGTCCATGACGAGATGGGAC 58.885 55.000 14.76 11.89 42.95 4.46
4248 8858 6.620678 CAGTTCACAAAATATGGAATCCGTT 58.379 36.000 0.00 0.00 0.00 4.44
4350 8960 3.521560 CATTGACTAACCGAGCAAGCTA 58.478 45.455 0.00 0.00 0.00 3.32
4356 8966 1.207329 AGACCCATTGACTAACCGAGC 59.793 52.381 0.00 0.00 0.00 5.03
4383 8993 5.240623 CCTTGTTACCAGTACAGCAATTCAA 59.759 40.000 0.00 0.00 0.00 2.69
4418 9028 3.188048 CACAGCTCAGAGAAAACATGGAC 59.812 47.826 0.00 0.00 0.00 4.02
4502 9186 0.252375 AATTCAGGGGGCACATTGCT 60.252 50.000 0.00 0.00 44.28 3.91
4585 9269 0.106719 CCATACGGCCCACATTTCCT 60.107 55.000 0.00 0.00 0.00 3.36
4662 9357 3.113043 AGGGTACAGGGTTCAGGATTAC 58.887 50.000 0.00 0.00 0.00 1.89
4723 9418 6.316390 GCTGCCAGTGTATAAAGAATAACTGT 59.684 38.462 0.00 0.00 32.75 3.55
4768 9468 6.624352 ACCATATACATGCTGCTAAAACAG 57.376 37.500 0.00 0.00 40.80 3.16
4895 9595 2.019984 GGAGCATGGATGAGAACCAAC 58.980 52.381 0.00 0.00 40.93 3.77
4953 9685 3.706600 ACCAAGCCCGACATTTACTTA 57.293 42.857 0.00 0.00 0.00 2.24
4959 9691 1.476488 GCAAATACCAAGCCCGACATT 59.524 47.619 0.00 0.00 0.00 2.71
4991 9723 8.038862 AGAATTTAGGGATCTCTCATAAGCAA 57.961 34.615 0.00 0.00 0.00 3.91
5021 9753 1.219773 ATGGACATGGACATCAGCCT 58.780 50.000 0.00 0.00 0.00 4.58
5022 9754 2.158769 TGTATGGACATGGACATCAGCC 60.159 50.000 7.55 0.00 0.00 4.85
5023 9755 3.136763 CTGTATGGACATGGACATCAGC 58.863 50.000 7.55 2.34 34.24 4.26
5024 9756 3.736720 CCTGTATGGACATGGACATCAG 58.263 50.000 7.55 12.77 38.35 2.90
5026 9758 2.105477 AGCCTGTATGGACATGGACATC 59.895 50.000 7.55 2.44 38.35 3.06
5027 9759 2.105477 GAGCCTGTATGGACATGGACAT 59.895 50.000 9.02 9.02 38.35 3.06
5029 9761 1.202698 GGAGCCTGTATGGACATGGAC 60.203 57.143 0.00 0.00 38.35 4.02
5030 9762 1.131638 GGAGCCTGTATGGACATGGA 58.868 55.000 0.00 0.00 38.35 3.41
5031 9763 1.135094 AGGAGCCTGTATGGACATGG 58.865 55.000 0.00 0.00 38.35 3.66
5032 9764 4.202398 ACATAAGGAGCCTGTATGGACATG 60.202 45.833 16.16 0.00 38.35 3.21
5033 9765 3.976654 ACATAAGGAGCCTGTATGGACAT 59.023 43.478 16.16 0.00 38.35 3.06
5034 9766 3.134623 CACATAAGGAGCCTGTATGGACA 59.865 47.826 16.16 0.00 38.35 4.02
5035 9767 3.733337 CACATAAGGAGCCTGTATGGAC 58.267 50.000 16.16 0.00 38.35 4.02
5036 9768 2.104792 GCACATAAGGAGCCTGTATGGA 59.895 50.000 16.16 0.00 38.35 3.41
5037 9769 2.158769 TGCACATAAGGAGCCTGTATGG 60.159 50.000 16.16 10.17 39.35 2.74
5038 9770 3.198409 TGCACATAAGGAGCCTGTATG 57.802 47.619 12.85 12.85 0.00 2.39
5061 9793 3.420893 TCAGACCAAAATCGGCAATTCT 58.579 40.909 0.00 0.00 0.00 2.40
5062 9794 3.848272 TCAGACCAAAATCGGCAATTC 57.152 42.857 0.00 0.00 0.00 2.17
5069 9801 8.458843 AGGTATACAAAATTCAGACCAAAATCG 58.541 33.333 5.01 0.00 0.00 3.34
5072 9804 8.698973 TGAGGTATACAAAATTCAGACCAAAA 57.301 30.769 5.01 0.00 0.00 2.44
5159 9891 0.460284 CCGGCTGACACTGGATACAC 60.460 60.000 0.00 0.00 46.17 2.90
5163 9895 2.665000 CACCGGCTGACACTGGAT 59.335 61.111 0.00 0.00 39.59 3.41
5164 9896 3.625897 CCACCGGCTGACACTGGA 61.626 66.667 0.00 0.00 39.59 3.86
5176 9908 2.298158 ATACGCCTTCTCAGCCACCG 62.298 60.000 0.00 0.00 0.00 4.94
5177 9909 0.750850 TATACGCCTTCTCAGCCACC 59.249 55.000 0.00 0.00 0.00 4.61
5178 9910 2.596904 TTATACGCCTTCTCAGCCAC 57.403 50.000 0.00 0.00 0.00 5.01
5179 9911 3.838244 ATTTATACGCCTTCTCAGCCA 57.162 42.857 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.