Multiple sequence alignment - TraesCS2A01G537400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G537400 chr2A 100.000 3086 0 0 1 3086 751092221 751095306 0.000000e+00 5699.0
1 TraesCS2A01G537400 chr2A 98.039 51 1 0 2948 2998 751095121 751095171 4.240000e-14 89.8
2 TraesCS2A01G537400 chr2A 98.039 51 1 0 2901 2951 751095168 751095218 4.240000e-14 89.8
3 TraesCS2A01G537400 chrUn 93.229 1595 91 10 921 2504 282353360 282354948 0.000000e+00 2331.0
4 TraesCS2A01G537400 chrUn 89.602 452 38 5 2495 2945 374006986 374007429 1.610000e-157 566.0
5 TraesCS2A01G537400 chrUn 83.571 280 27 6 1739 2018 374007578 374007838 8.550000e-61 244.0
6 TraesCS2A01G537400 chr2B 93.229 1595 91 10 921 2504 758942943 758941355 0.000000e+00 2331.0
7 TraesCS2A01G537400 chr2B 90.875 1611 97 23 921 2490 759172509 759174110 0.000000e+00 2115.0
8 TraesCS2A01G537400 chr2B 86.262 313 37 5 2644 2951 759174372 759174683 4.930000e-88 335.0
9 TraesCS2A01G537400 chr2B 92.143 140 9 1 294 433 758975789 758975652 2.430000e-46 196.0
10 TraesCS2A01G537400 chr2B 87.919 149 5 4 3 142 759170281 759170425 2.460000e-36 163.0
11 TraesCS2A01G537400 chr2B 72.860 479 101 24 1206 1659 30418075 30417601 1.490000e-28 137.0
12 TraesCS2A01G537400 chr2B 85.938 128 8 3 722 839 758893928 758894055 8.980000e-26 128.0
13 TraesCS2A01G537400 chr2D 90.631 1569 98 24 873 2413 619598314 619599861 0.000000e+00 2037.0
14 TraesCS2A01G537400 chr2D 87.839 1143 88 20 1840 2951 619602852 619603974 0.000000e+00 1293.0
15 TraesCS2A01G537400 chr2D 90.780 282 25 1 76 356 619597674 619597955 2.910000e-100 375.0
16 TraesCS2A01G537400 chr2D 95.333 150 6 1 668 817 619598152 619598300 1.430000e-58 237.0
17 TraesCS2A01G537400 chr2D 89.888 178 8 4 470 638 619597975 619598151 1.440000e-53 220.0
18 TraesCS2A01G537400 chr2D 73.524 593 124 25 1200 1765 13856394 13856980 8.730000e-46 195.0
19 TraesCS2A01G537400 chr2D 91.603 131 10 1 2953 3082 619603928 619604058 2.440000e-41 180.0
20 TraesCS2A01G537400 chr2D 72.713 634 132 36 1206 1808 18269632 18269009 1.140000e-39 174.0
21 TraesCS2A01G537400 chr2D 71.599 588 132 28 1206 1764 18257170 18256589 8.980000e-26 128.0
22 TraesCS2A01G537400 chr6A 71.821 582 136 23 1128 1691 594661422 594661993 1.150000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G537400 chr2A 751092221 751095306 3085 False 1959.533333 5699 98.692667 1 3086 3 chr2A.!!$F1 3085
1 TraesCS2A01G537400 chrUn 282353360 282354948 1588 False 2331.000000 2331 93.229000 921 2504 1 chrUn.!!$F1 1583
2 TraesCS2A01G537400 chrUn 374006986 374007838 852 False 405.000000 566 86.586500 1739 2945 2 chrUn.!!$F2 1206
3 TraesCS2A01G537400 chr2B 758941355 758942943 1588 True 2331.000000 2331 93.229000 921 2504 1 chr2B.!!$R2 1583
4 TraesCS2A01G537400 chr2B 759170281 759174683 4402 False 871.000000 2115 88.352000 3 2951 3 chr2B.!!$F2 2948
5 TraesCS2A01G537400 chr2D 619597674 619604058 6384 False 723.666667 2037 91.012333 76 3082 6 chr2D.!!$F2 3006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
847 2142 0.109532 TTGTTGGTGGAAGATGGCGA 59.89 50.0 0.0 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2758 8005 0.030235 CCGGATATTCTCGTGTCGCA 59.97 55.0 0.0 0.0 0.0 5.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.530161 AGGCTAGAGGCAGGATTAATGTAG 59.470 45.833 5.83 0.00 44.01 2.74
45 46 6.292150 GCTAGAGGCAGGATTAATGTAGTTT 58.708 40.000 0.00 0.00 41.35 2.66
46 47 6.768381 GCTAGAGGCAGGATTAATGTAGTTTT 59.232 38.462 0.00 0.00 41.35 2.43
47 48 7.283354 GCTAGAGGCAGGATTAATGTAGTTTTT 59.717 37.037 0.00 0.00 41.35 1.94
48 49 7.631717 AGAGGCAGGATTAATGTAGTTTTTC 57.368 36.000 0.00 0.00 0.00 2.29
126 135 5.467063 GTGGTAATCTAGCTGTATTTCTGCC 59.533 44.000 0.00 0.00 41.02 4.85
147 156 4.335315 GCCACGAGGAAAACATTATGATCA 59.665 41.667 1.86 0.00 36.89 2.92
151 160 7.645340 CCACGAGGAAAACATTATGATCAATTC 59.355 37.037 0.00 0.00 36.89 2.17
162 171 2.887337 TGATCAATTCGTTGCGCTCTA 58.113 42.857 9.73 0.00 0.00 2.43
274 284 5.802465 TGGATTTGCAATATTTTTCTGCCA 58.198 33.333 0.00 0.00 35.13 4.92
292 302 6.237901 TCTGCCATAATGTGTTAACAACTCT 58.762 36.000 10.51 0.00 40.46 3.24
357 367 6.245115 TGCAGATTTGTACAAGTCATGAAG 57.755 37.500 26.90 14.76 30.52 3.02
358 368 5.181811 TGCAGATTTGTACAAGTCATGAAGG 59.818 40.000 26.90 13.17 30.52 3.46
359 369 5.392380 GCAGATTTGTACAAGTCATGAAGGG 60.392 44.000 26.90 11.84 30.52 3.95
360 370 5.707298 CAGATTTGTACAAGTCATGAAGGGT 59.293 40.000 26.90 6.64 30.52 4.34
363 373 4.431416 TGTACAAGTCATGAAGGGTTGT 57.569 40.909 14.75 14.75 35.56 3.32
364 374 5.554437 TGTACAAGTCATGAAGGGTTGTA 57.446 39.130 13.31 13.31 33.50 2.41
367 377 5.241403 ACAAGTCATGAAGGGTTGTATGA 57.759 39.130 0.00 0.00 29.63 2.15
369 379 5.013079 ACAAGTCATGAAGGGTTGTATGAGA 59.987 40.000 0.00 0.00 30.86 3.27
415 805 9.887629 ACTCCATTATTGAGATGATATAAGCAG 57.112 33.333 0.07 0.00 33.95 4.24
432 822 7.832503 ATAAGCAGAATTGTTTTATGTTGCC 57.167 32.000 0.00 0.00 0.00 4.52
433 823 5.212532 AGCAGAATTGTTTTATGTTGCCA 57.787 34.783 0.00 0.00 0.00 4.92
434 824 4.990426 AGCAGAATTGTTTTATGTTGCCAC 59.010 37.500 0.00 0.00 0.00 5.01
435 825 4.749099 GCAGAATTGTTTTATGTTGCCACA 59.251 37.500 0.00 0.00 37.31 4.17
436 826 5.107375 GCAGAATTGTTTTATGTTGCCACAG 60.107 40.000 0.00 0.00 35.94 3.66
437 827 5.984926 CAGAATTGTTTTATGTTGCCACAGT 59.015 36.000 0.00 0.00 35.94 3.55
438 828 7.144661 CAGAATTGTTTTATGTTGCCACAGTA 58.855 34.615 0.00 0.00 35.94 2.74
439 829 7.114811 CAGAATTGTTTTATGTTGCCACAGTAC 59.885 37.037 0.00 0.00 35.94 2.73
440 830 4.475763 TGTTTTATGTTGCCACAGTACG 57.524 40.909 0.00 0.00 35.94 3.67
441 831 4.127907 TGTTTTATGTTGCCACAGTACGA 58.872 39.130 0.00 0.00 35.94 3.43
442 832 4.024725 TGTTTTATGTTGCCACAGTACGAC 60.025 41.667 0.00 0.00 35.94 4.34
443 833 3.388345 TTATGTTGCCACAGTACGACA 57.612 42.857 0.00 0.00 35.94 4.35
444 834 1.795768 ATGTTGCCACAGTACGACAG 58.204 50.000 0.00 0.00 35.94 3.51
445 835 0.249699 TGTTGCCACAGTACGACAGG 60.250 55.000 0.00 0.00 0.00 4.00
446 836 0.949105 GTTGCCACAGTACGACAGGG 60.949 60.000 0.00 0.00 0.00 4.45
447 837 1.404479 TTGCCACAGTACGACAGGGT 61.404 55.000 0.00 0.00 0.00 4.34
448 838 0.540133 TGCCACAGTACGACAGGGTA 60.540 55.000 0.00 0.00 0.00 3.69
449 839 0.604578 GCCACAGTACGACAGGGTAA 59.395 55.000 0.00 0.00 0.00 2.85
450 840 1.206371 GCCACAGTACGACAGGGTAAT 59.794 52.381 0.00 0.00 0.00 1.89
451 841 2.354403 GCCACAGTACGACAGGGTAATT 60.354 50.000 0.00 0.00 0.00 1.40
452 842 3.119029 GCCACAGTACGACAGGGTAATTA 60.119 47.826 0.00 0.00 0.00 1.40
453 843 4.621274 GCCACAGTACGACAGGGTAATTAA 60.621 45.833 0.00 0.00 0.00 1.40
454 844 5.667466 CCACAGTACGACAGGGTAATTAAT 58.333 41.667 0.00 0.00 0.00 1.40
455 845 6.683610 GCCACAGTACGACAGGGTAATTAATA 60.684 42.308 0.00 0.00 0.00 0.98
456 846 6.698766 CCACAGTACGACAGGGTAATTAATAC 59.301 42.308 0.00 0.00 0.00 1.89
457 847 6.415867 CACAGTACGACAGGGTAATTAATACG 59.584 42.308 0.00 0.00 35.19 3.06
458 848 6.095440 ACAGTACGACAGGGTAATTAATACGT 59.905 38.462 0.00 0.00 35.19 3.57
459 849 6.415867 CAGTACGACAGGGTAATTAATACGTG 59.584 42.308 0.00 0.00 35.19 4.49
488 878 5.864474 GTCCCATACTCTAGATTATTGTGCG 59.136 44.000 0.01 0.00 0.00 5.34
529 1518 8.390354 CGATCAGTGCAATTTTAAATGTCTAGA 58.610 33.333 0.00 0.00 0.00 2.43
590 1587 5.012664 GGGTTAACCTCCAAAATTTCATGGT 59.987 40.000 23.69 4.56 37.94 3.55
649 1648 7.062022 CGAAAACCCGTAAGAAAAACAAAAAGA 59.938 33.333 0.00 0.00 43.02 2.52
651 1650 7.821595 AACCCGTAAGAAAAACAAAAAGAAG 57.178 32.000 0.00 0.00 43.02 2.85
656 1655 9.349145 CCGTAAGAAAAACAAAAAGAAGAGAAA 57.651 29.630 0.00 0.00 43.02 2.52
773 1772 3.565516 GTTTGCGGATTGGAGAAGTTTC 58.434 45.455 0.00 0.00 0.00 2.78
793 2088 8.266392 AGTTTCATTTTGTTTGAATCTGCAAA 57.734 26.923 0.00 0.00 33.83 3.68
819 2114 1.418637 TGGTAGTTGTTGGACCTGGAC 59.581 52.381 0.00 0.00 34.13 4.02
827 2122 1.352622 TTGGACCTGGACCTGTTGCT 61.353 55.000 16.02 0.00 0.00 3.91
839 2134 1.480137 CCTGTTGCTTTGTTGGTGGAA 59.520 47.619 0.00 0.00 0.00 3.53
840 2135 2.481795 CCTGTTGCTTTGTTGGTGGAAG 60.482 50.000 0.00 0.00 0.00 3.46
841 2136 2.426738 CTGTTGCTTTGTTGGTGGAAGA 59.573 45.455 0.00 0.00 0.00 2.87
842 2137 3.030291 TGTTGCTTTGTTGGTGGAAGAT 58.970 40.909 0.00 0.00 0.00 2.40
843 2138 3.181477 TGTTGCTTTGTTGGTGGAAGATG 60.181 43.478 0.00 0.00 0.00 2.90
844 2139 1.962807 TGCTTTGTTGGTGGAAGATGG 59.037 47.619 0.00 0.00 0.00 3.51
845 2140 1.337167 GCTTTGTTGGTGGAAGATGGC 60.337 52.381 0.00 0.00 0.00 4.40
846 2141 0.958091 TTTGTTGGTGGAAGATGGCG 59.042 50.000 0.00 0.00 0.00 5.69
847 2142 0.109532 TTGTTGGTGGAAGATGGCGA 59.890 50.000 0.00 0.00 0.00 5.54
848 2143 0.321564 TGTTGGTGGAAGATGGCGAG 60.322 55.000 0.00 0.00 0.00 5.03
849 2144 1.377202 TTGGTGGAAGATGGCGAGC 60.377 57.895 0.00 0.00 0.00 5.03
850 2145 2.123248 TTGGTGGAAGATGGCGAGCA 62.123 55.000 0.00 0.00 0.00 4.26
851 2146 1.377202 GGTGGAAGATGGCGAGCAA 60.377 57.895 0.00 0.00 0.00 3.91
852 2147 0.960364 GGTGGAAGATGGCGAGCAAA 60.960 55.000 0.00 0.00 0.00 3.68
853 2148 1.098050 GTGGAAGATGGCGAGCAAAT 58.902 50.000 0.00 0.00 0.00 2.32
854 2149 1.097232 TGGAAGATGGCGAGCAAATG 58.903 50.000 0.00 0.00 0.00 2.32
855 2150 1.098050 GGAAGATGGCGAGCAAATGT 58.902 50.000 0.00 0.00 0.00 2.71
856 2151 2.288666 GGAAGATGGCGAGCAAATGTA 58.711 47.619 0.00 0.00 0.00 2.29
857 2152 2.880890 GGAAGATGGCGAGCAAATGTAT 59.119 45.455 0.00 0.00 0.00 2.29
858 2153 3.304257 GGAAGATGGCGAGCAAATGTATG 60.304 47.826 0.00 0.00 0.00 2.39
859 2154 3.198409 AGATGGCGAGCAAATGTATGA 57.802 42.857 0.00 0.00 0.00 2.15
860 2155 3.544684 AGATGGCGAGCAAATGTATGAA 58.455 40.909 0.00 0.00 0.00 2.57
861 2156 3.562973 AGATGGCGAGCAAATGTATGAAG 59.437 43.478 0.00 0.00 0.00 3.02
862 2157 1.401552 TGGCGAGCAAATGTATGAAGC 59.598 47.619 0.00 0.00 0.00 3.86
863 2158 1.672881 GGCGAGCAAATGTATGAAGCT 59.327 47.619 0.00 0.00 38.43 3.74
864 2159 2.540361 GGCGAGCAAATGTATGAAGCTG 60.540 50.000 0.00 0.00 35.36 4.24
865 2160 2.540361 GCGAGCAAATGTATGAAGCTGG 60.540 50.000 0.00 0.00 35.36 4.85
866 2161 2.938451 CGAGCAAATGTATGAAGCTGGA 59.062 45.455 0.00 0.00 35.36 3.86
944 2396 3.119291 CTCGCTTCGCTCATAACATCTT 58.881 45.455 0.00 0.00 0.00 2.40
947 2399 3.553511 CGCTTCGCTCATAACATCTTCTT 59.446 43.478 0.00 0.00 0.00 2.52
1170 2648 1.664873 CTGGCTGAGATCACACATGG 58.335 55.000 0.00 0.00 0.00 3.66
1287 2765 1.227089 CTCGCCTTCACCATCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
1337 2819 2.738521 CTGCTCACGACCAACCCG 60.739 66.667 0.00 0.00 0.00 5.28
1557 3042 1.227973 GGCAAAGGGGCTCCTATCG 60.228 63.158 4.93 0.00 44.07 2.92
1697 3182 6.634805 TCTCAAGTATGAAGAGATTGTGTCC 58.365 40.000 0.00 0.00 34.49 4.02
1739 3224 2.394563 GCTCGCAAGCTTCCTGGAC 61.395 63.158 0.00 0.00 45.55 4.02
1932 6991 3.778619 TGGGTGAACCATATGAGCG 57.221 52.632 3.65 0.00 46.80 5.03
1934 6993 1.557371 TGGGTGAACCATATGAGCGAA 59.443 47.619 3.65 0.00 46.80 4.70
1987 7046 4.082517 GGAGGAAAAGTTCAAAGGATCTGC 60.083 45.833 0.00 0.00 0.00 4.26
2002 7061 3.569701 GGATCTGCTCTAGAGTTCTGAGG 59.430 52.174 20.75 4.48 39.20 3.86
2077 7141 8.360390 TGATGTATCATGAAGTCTATGTACACC 58.640 37.037 0.00 0.00 31.46 4.16
2117 7181 1.072266 TGTTTATGGTGACCTGGCCT 58.928 50.000 3.32 0.00 0.00 5.19
2138 7202 4.439563 CCTTTGTGAAAAGTTAGTTGCGGT 60.440 41.667 0.00 0.00 0.00 5.68
2139 7203 5.220892 CCTTTGTGAAAAGTTAGTTGCGGTA 60.221 40.000 0.00 0.00 0.00 4.02
2140 7204 5.814764 TTGTGAAAAGTTAGTTGCGGTAA 57.185 34.783 0.00 0.00 0.00 2.85
2196 7260 8.548880 AAGAGCAATATACTAGTCCCTTTGTA 57.451 34.615 0.00 0.00 0.00 2.41
2197 7261 7.953752 AGAGCAATATACTAGTCCCTTTGTAC 58.046 38.462 0.00 0.00 0.00 2.90
2198 7262 7.015389 AGAGCAATATACTAGTCCCTTTGTACC 59.985 40.741 0.00 0.00 0.00 3.34
2199 7263 6.042897 AGCAATATACTAGTCCCTTTGTACCC 59.957 42.308 0.00 0.00 0.00 3.69
2232 7308 9.887629 TTGATATCAAAATGTTACCAATTGCAT 57.112 25.926 15.82 0.00 32.11 3.96
2266 7342 4.458642 CACACCAATACAATGTCATGACCA 59.541 41.667 22.85 11.43 0.00 4.02
2278 7354 2.744202 GTCATGACCAAGTCGAAGCATT 59.256 45.455 15.31 0.00 34.95 3.56
2473 7550 5.009010 GTGCAATATTTAGTCCCACATCAGG 59.991 44.000 0.00 0.00 0.00 3.86
2492 7569 2.096248 GGACTAGAGGTGGAGTGTGAG 58.904 57.143 0.00 0.00 0.00 3.51
2499 7576 0.877071 GGTGGAGTGTGAGCAACATG 59.123 55.000 0.00 0.00 41.97 3.21
2506 7751 4.568359 GGAGTGTGAGCAACATGTATAGTG 59.432 45.833 0.00 0.00 41.97 2.74
2530 7775 3.195610 AGTCTCCGCACATCAATAAGTGA 59.804 43.478 0.00 0.00 41.67 3.41
2547 7792 2.025226 AGTGATGGGTACGAGAAGAGGA 60.025 50.000 0.00 0.00 0.00 3.71
2554 7799 3.129113 GGGTACGAGAAGAGGAAGAGAAC 59.871 52.174 0.00 0.00 0.00 3.01
2617 7862 4.988598 AAGGACGCGGGTGTGCAG 62.989 66.667 10.96 0.00 31.86 4.41
2721 7968 7.001674 TCTTGCCCAGTAAATTGTTTAGAAGA 58.998 34.615 0.00 0.00 0.00 2.87
2750 7997 4.586884 TCTAGTCAGTGTAGACCGTGATT 58.413 43.478 0.00 0.00 39.34 2.57
2755 8002 1.135373 AGTGTAGACCGTGATTGCGAG 60.135 52.381 0.00 0.00 0.00 5.03
2756 8003 0.885879 TGTAGACCGTGATTGCGAGT 59.114 50.000 0.00 0.00 0.00 4.18
2757 8004 1.271379 TGTAGACCGTGATTGCGAGTT 59.729 47.619 0.00 0.00 0.00 3.01
2758 8005 2.288579 TGTAGACCGTGATTGCGAGTTT 60.289 45.455 0.00 0.00 0.00 2.66
2759 8006 1.148310 AGACCGTGATTGCGAGTTTG 58.852 50.000 0.00 0.00 0.00 2.93
2760 8007 0.452784 GACCGTGATTGCGAGTTTGC 60.453 55.000 0.00 0.00 0.00 3.68
2771 8018 1.060713 CGAGTTTGCGACACGAGAAT 58.939 50.000 4.33 0.00 43.74 2.40
2784 8031 1.962100 ACGAGAATATCCGGTTCTCCC 59.038 52.381 21.37 5.25 45.52 4.30
2834 8083 8.238631 GCCAAAAGGTACATAAAATCGAGTTAA 58.761 33.333 0.00 0.00 0.00 2.01
2847 8096 4.859304 TCGAGTTAAGTAGTTTCTGGCA 57.141 40.909 0.00 0.00 0.00 4.92
2887 8136 4.101448 GCTGGCGTCTCCACCCAT 62.101 66.667 0.00 0.00 40.72 4.00
2902 8151 0.183014 CCCATGAGCAGGAGAGCAAT 59.817 55.000 0.00 0.00 36.85 3.56
2904 8153 1.676529 CCATGAGCAGGAGAGCAATTG 59.323 52.381 0.00 0.00 36.85 2.32
2911 8160 2.494870 GCAGGAGAGCAATTGTTTGGAT 59.505 45.455 7.40 0.00 33.22 3.41
2945 8194 0.171231 GATCTTGCACCGGAAAAGGC 59.829 55.000 9.46 4.00 33.69 4.35
2946 8195 1.586154 ATCTTGCACCGGAAAAGGCG 61.586 55.000 9.46 0.00 33.69 5.52
2947 8196 2.203224 TTGCACCGGAAAAGGCGA 60.203 55.556 9.46 0.07 33.69 5.54
2948 8197 1.791103 CTTGCACCGGAAAAGGCGAA 61.791 55.000 9.46 0.88 33.69 4.70
2949 8198 1.175983 TTGCACCGGAAAAGGCGAAT 61.176 50.000 9.46 0.00 33.69 3.34
2950 8199 1.175983 TGCACCGGAAAAGGCGAATT 61.176 50.000 9.46 0.00 33.69 2.17
2951 8200 0.732538 GCACCGGAAAAGGCGAATTG 60.733 55.000 9.46 0.00 33.69 2.32
2952 8201 0.596082 CACCGGAAAAGGCGAATTGT 59.404 50.000 9.46 0.00 33.69 2.71
2953 8202 1.000717 CACCGGAAAAGGCGAATTGTT 60.001 47.619 9.46 0.00 33.69 2.83
2954 8203 1.684450 ACCGGAAAAGGCGAATTGTTT 59.316 42.857 9.46 0.00 33.69 2.83
2955 8204 2.058057 CCGGAAAAGGCGAATTGTTTG 58.942 47.619 0.00 0.00 0.00 2.93
2956 8205 2.058057 CGGAAAAGGCGAATTGTTTGG 58.942 47.619 0.00 0.00 0.00 3.28
2957 8206 2.287909 CGGAAAAGGCGAATTGTTTGGA 60.288 45.455 0.00 0.00 0.00 3.53
2958 8207 3.613910 CGGAAAAGGCGAATTGTTTGGAT 60.614 43.478 0.00 0.00 0.00 3.41
2959 8208 3.926527 GGAAAAGGCGAATTGTTTGGATC 59.073 43.478 0.00 0.00 0.00 3.36
2960 8209 3.592898 AAAGGCGAATTGTTTGGATCC 57.407 42.857 4.20 4.20 0.00 3.36
2961 8210 2.514458 AGGCGAATTGTTTGGATCCT 57.486 45.000 14.23 0.00 0.00 3.24
2962 8211 2.369394 AGGCGAATTGTTTGGATCCTC 58.631 47.619 14.23 4.34 0.00 3.71
2963 8212 2.025887 AGGCGAATTGTTTGGATCCTCT 60.026 45.455 14.23 0.00 0.00 3.69
2964 8213 2.755103 GGCGAATTGTTTGGATCCTCTT 59.245 45.455 14.23 0.00 0.00 2.85
2965 8214 3.428045 GGCGAATTGTTTGGATCCTCTTG 60.428 47.826 14.23 0.00 0.00 3.02
2966 8215 3.762779 CGAATTGTTTGGATCCTCTTGC 58.237 45.455 14.23 0.00 0.00 4.01
2967 8216 3.428045 CGAATTGTTTGGATCCTCTTGCC 60.428 47.826 14.23 0.00 0.00 4.52
2968 8217 2.978156 TTGTTTGGATCCTCTTGCCT 57.022 45.000 14.23 0.00 0.00 4.75
2969 8218 2.978156 TGTTTGGATCCTCTTGCCTT 57.022 45.000 14.23 0.00 0.00 4.35
2970 8219 3.243359 TGTTTGGATCCTCTTGCCTTT 57.757 42.857 14.23 0.00 0.00 3.11
2971 8220 2.892852 TGTTTGGATCCTCTTGCCTTTG 59.107 45.455 14.23 0.00 0.00 2.77
2972 8221 2.893489 GTTTGGATCCTCTTGCCTTTGT 59.107 45.455 14.23 0.00 0.00 2.83
2973 8222 2.205022 TGGATCCTCTTGCCTTTGTG 57.795 50.000 14.23 0.00 0.00 3.33
2974 8223 1.704628 TGGATCCTCTTGCCTTTGTGA 59.295 47.619 14.23 0.00 0.00 3.58
2975 8224 2.309755 TGGATCCTCTTGCCTTTGTGAT 59.690 45.455 14.23 0.00 0.00 3.06
2976 8225 2.948315 GGATCCTCTTGCCTTTGTGATC 59.052 50.000 3.84 0.00 0.00 2.92
2977 8226 3.371380 GGATCCTCTTGCCTTTGTGATCT 60.371 47.826 3.84 0.00 0.00 2.75
2978 8227 3.795688 TCCTCTTGCCTTTGTGATCTT 57.204 42.857 0.00 0.00 0.00 2.40
2979 8228 3.415212 TCCTCTTGCCTTTGTGATCTTG 58.585 45.455 0.00 0.00 0.00 3.02
2980 8229 2.094854 CCTCTTGCCTTTGTGATCTTGC 60.095 50.000 0.00 0.00 0.00 4.01
2981 8230 2.555325 CTCTTGCCTTTGTGATCTTGCA 59.445 45.455 0.00 0.00 0.00 4.08
2982 8231 3.159472 TCTTGCCTTTGTGATCTTGCAT 58.841 40.909 0.00 0.00 0.00 3.96
2983 8232 3.192001 TCTTGCCTTTGTGATCTTGCATC 59.808 43.478 0.00 0.00 0.00 3.91
2984 8233 1.469703 TGCCTTTGTGATCTTGCATCG 59.530 47.619 0.00 0.00 0.00 3.84
2985 8234 1.202222 GCCTTTGTGATCTTGCATCGG 60.202 52.381 0.00 0.00 0.00 4.18
2986 8235 2.358957 CCTTTGTGATCTTGCATCGGA 58.641 47.619 0.00 0.00 0.00 4.55
2987 8236 2.749076 CCTTTGTGATCTTGCATCGGAA 59.251 45.455 0.00 0.00 0.00 4.30
2988 8237 3.191162 CCTTTGTGATCTTGCATCGGAAA 59.809 43.478 0.00 0.00 0.00 3.13
2989 8238 4.321156 CCTTTGTGATCTTGCATCGGAAAA 60.321 41.667 0.00 0.00 0.00 2.29
2990 8239 4.424061 TTGTGATCTTGCATCGGAAAAG 57.576 40.909 0.00 0.00 0.00 2.27
2991 8240 2.749076 TGTGATCTTGCATCGGAAAAGG 59.251 45.455 0.00 0.00 0.00 3.11
2992 8241 1.745087 TGATCTTGCATCGGAAAAGGC 59.255 47.619 0.00 0.00 0.00 4.35
3004 8253 3.437741 TCGGAAAAGGCGAATTAGGTTTC 59.562 43.478 0.00 0.00 0.00 2.78
3007 8256 4.457949 GGAAAAGGCGAATTAGGTTTCTGA 59.542 41.667 0.00 0.00 0.00 3.27
3012 8261 5.070685 AGGCGAATTAGGTTTCTGAAAAGT 58.929 37.500 4.09 0.00 0.00 2.66
3018 8267 7.307751 CGAATTAGGTTTCTGAAAAGTGCTACA 60.308 37.037 4.09 0.00 0.00 2.74
3026 8275 8.770828 GTTTCTGAAAAGTGCTACATGTAACTA 58.229 33.333 10.00 0.00 0.00 2.24
3040 8289 9.809096 CTACATGTAACTACTCACTTTCATCAT 57.191 33.333 7.06 0.00 0.00 2.45
3055 8304 4.271696 TCATCATCACAGGTCGTTTTCT 57.728 40.909 0.00 0.00 0.00 2.52
3077 8326 2.434884 AAGTCAGGTGGCATCGCG 60.435 61.111 0.00 0.00 0.00 5.87
3082 8331 4.508128 AGGTGGCATCGCGTACCG 62.508 66.667 5.77 0.00 39.99 4.02
3083 8332 4.807039 GGTGGCATCGCGTACCGT 62.807 66.667 5.77 0.00 38.35 4.83
3084 8333 2.812178 GTGGCATCGCGTACCGTT 60.812 61.111 5.77 0.00 38.35 4.44
3085 8334 2.811747 TGGCATCGCGTACCGTTG 60.812 61.111 5.77 9.22 39.14 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.166919 ACATTAATCCTGCCTCTAGCCTTT 59.833 41.667 0.00 0.00 42.71 3.11
27 28 9.140286 GAAAAGAAAAACTACATTAATCCTGCC 57.860 33.333 0.00 0.00 0.00 4.85
74 75 1.176527 CGTGGTGAGCAATCCCAAAT 58.823 50.000 0.00 0.00 0.00 2.32
126 135 7.374228 CGAATTGATCATAATGTTTTCCTCGTG 59.626 37.037 0.00 0.00 0.00 4.35
147 156 5.796350 ATTTAGTTAGAGCGCAACGAATT 57.204 34.783 11.47 5.50 0.00 2.17
151 160 7.690637 TCAAAAATATTTAGTTAGAGCGCAACG 59.309 33.333 11.47 0.00 0.00 4.10
187 196 6.174049 GTCTTAAGGCCAGACATTCTAAGTT 58.826 40.000 15.12 0.00 40.50 2.66
246 255 9.628746 GCAGAAAAATATTGCAAATCCAATTTT 57.371 25.926 1.71 8.31 36.80 1.82
249 258 6.885376 TGGCAGAAAAATATTGCAAATCCAAT 59.115 30.769 1.71 0.00 39.54 3.16
338 348 6.016276 ACAACCCTTCATGACTTGTACAAATC 60.016 38.462 10.07 10.07 0.00 2.17
357 367 6.817765 TGAAAGTTGATTCTCATACAACCC 57.182 37.500 0.00 0.00 42.98 4.11
358 368 8.273780 AGATGAAAGTTGATTCTCATACAACC 57.726 34.615 0.00 0.00 42.98 3.77
406 796 9.533253 GGCAACATAAAACAATTCTGCTTATAT 57.467 29.630 0.00 0.00 0.00 0.86
407 797 8.526978 TGGCAACATAAAACAATTCTGCTTATA 58.473 29.630 0.00 0.00 46.17 0.98
409 799 6.753180 TGGCAACATAAAACAATTCTGCTTA 58.247 32.000 0.00 0.00 46.17 3.09
411 801 5.212532 TGGCAACATAAAACAATTCTGCT 57.787 34.783 0.00 0.00 46.17 4.24
427 817 0.949105 CCCTGTCGTACTGTGGCAAC 60.949 60.000 0.00 0.00 0.00 4.17
428 818 1.369692 CCCTGTCGTACTGTGGCAA 59.630 57.895 0.00 0.00 0.00 4.52
429 819 0.540133 TACCCTGTCGTACTGTGGCA 60.540 55.000 0.00 0.00 0.00 4.92
430 820 0.604578 TTACCCTGTCGTACTGTGGC 59.395 55.000 0.00 0.00 0.00 5.01
431 821 3.604875 AATTACCCTGTCGTACTGTGG 57.395 47.619 0.00 0.00 0.00 4.17
432 822 6.415867 CGTATTAATTACCCTGTCGTACTGTG 59.584 42.308 0.00 0.00 0.00 3.66
433 823 6.095440 ACGTATTAATTACCCTGTCGTACTGT 59.905 38.462 0.00 0.00 0.00 3.55
434 824 6.415867 CACGTATTAATTACCCTGTCGTACTG 59.584 42.308 0.00 0.00 0.00 2.74
435 825 6.460123 CCACGTATTAATTACCCTGTCGTACT 60.460 42.308 0.00 0.00 0.00 2.73
436 826 5.687285 CCACGTATTAATTACCCTGTCGTAC 59.313 44.000 0.00 0.00 0.00 3.67
437 827 5.359576 ACCACGTATTAATTACCCTGTCGTA 59.640 40.000 0.00 0.00 0.00 3.43
438 828 4.160252 ACCACGTATTAATTACCCTGTCGT 59.840 41.667 0.00 0.00 0.00 4.34
439 829 4.505191 CACCACGTATTAATTACCCTGTCG 59.495 45.833 0.00 0.00 0.00 4.35
440 830 4.271776 GCACCACGTATTAATTACCCTGTC 59.728 45.833 0.00 0.00 0.00 3.51
441 831 4.193865 GCACCACGTATTAATTACCCTGT 58.806 43.478 0.00 0.00 0.00 4.00
442 832 3.246699 CGCACCACGTATTAATTACCCTG 59.753 47.826 0.00 0.00 36.87 4.45
443 833 3.460103 CGCACCACGTATTAATTACCCT 58.540 45.455 0.00 0.00 36.87 4.34
444 834 3.865224 CGCACCACGTATTAATTACCC 57.135 47.619 0.00 0.00 36.87 3.69
456 846 1.518572 GAGTATGGGACGCACCACG 60.519 63.158 0.19 0.00 44.72 4.94
457 847 1.067212 CTAGAGTATGGGACGCACCAC 59.933 57.143 0.19 0.00 44.72 4.16
458 848 1.064240 TCTAGAGTATGGGACGCACCA 60.064 52.381 0.75 0.75 46.24 4.17
459 849 1.688772 TCTAGAGTATGGGACGCACC 58.311 55.000 0.00 0.00 38.08 5.01
465 855 5.773176 TCGCACAATAATCTAGAGTATGGGA 59.227 40.000 16.88 14.45 0.00 4.37
466 856 6.025749 TCGCACAATAATCTAGAGTATGGG 57.974 41.667 16.88 12.73 0.00 4.00
468 858 8.026026 ACATCTCGCACAATAATCTAGAGTATG 58.974 37.037 13.16 9.88 0.00 2.39
535 1524 9.457436 TCATACTCCCTCCTTTTTAAAATGTAC 57.543 33.333 0.55 0.00 0.00 2.90
612 1609 6.823689 TCTTACGGGTTTTCGTCTACTAGTAT 59.176 38.462 2.33 0.00 42.82 2.12
613 1610 6.170506 TCTTACGGGTTTTCGTCTACTAGTA 58.829 40.000 1.89 1.89 42.82 1.82
623 1620 6.629182 TTTTGTTTTTCTTACGGGTTTTCG 57.371 33.333 0.00 0.00 0.00 3.46
649 1648 7.015001 ACTCCATTCAGAGCAAATTTTTCTCTT 59.985 33.333 14.07 2.19 37.39 2.85
651 1650 6.585322 CACTCCATTCAGAGCAAATTTTTCTC 59.415 38.462 8.47 8.47 37.39 2.87
656 1655 5.623824 GCATCACTCCATTCAGAGCAAATTT 60.624 40.000 0.00 0.00 37.39 1.82
657 1656 4.142227 GCATCACTCCATTCAGAGCAAATT 60.142 41.667 0.00 0.00 37.39 1.82
658 1657 3.380637 GCATCACTCCATTCAGAGCAAAT 59.619 43.478 0.00 0.00 37.39 2.32
694 1693 3.891366 ACTGGGGTTCATTTCTCTTGTTG 59.109 43.478 0.00 0.00 0.00 3.33
725 1724 3.095347 GCTGATCCCTCACCCGGAC 62.095 68.421 0.73 0.00 30.39 4.79
773 1772 6.423862 CACCTTTGCAGATTCAAACAAAATG 58.576 36.000 0.00 0.00 32.09 2.32
793 2088 1.142262 GTCCAACAACTACCACCACCT 59.858 52.381 0.00 0.00 0.00 4.00
819 2114 1.110442 TCCACCAACAAAGCAACAGG 58.890 50.000 0.00 0.00 0.00 4.00
827 2122 0.958091 CGCCATCTTCCACCAACAAA 59.042 50.000 0.00 0.00 0.00 2.83
839 2134 3.198409 TCATACATTTGCTCGCCATCT 57.802 42.857 0.00 0.00 0.00 2.90
840 2135 3.851105 GCTTCATACATTTGCTCGCCATC 60.851 47.826 0.00 0.00 0.00 3.51
841 2136 2.033801 GCTTCATACATTTGCTCGCCAT 59.966 45.455 0.00 0.00 0.00 4.40
842 2137 1.401552 GCTTCATACATTTGCTCGCCA 59.598 47.619 0.00 0.00 0.00 5.69
843 2138 1.672881 AGCTTCATACATTTGCTCGCC 59.327 47.619 0.00 0.00 0.00 5.54
844 2139 2.540361 CCAGCTTCATACATTTGCTCGC 60.540 50.000 0.00 0.00 0.00 5.03
845 2140 2.938451 TCCAGCTTCATACATTTGCTCG 59.062 45.455 0.00 0.00 0.00 5.03
846 2141 4.194640 TCTCCAGCTTCATACATTTGCTC 58.805 43.478 0.00 0.00 0.00 4.26
847 2142 4.226427 TCTCCAGCTTCATACATTTGCT 57.774 40.909 0.00 0.00 0.00 3.91
848 2143 4.577693 TCATCTCCAGCTTCATACATTTGC 59.422 41.667 0.00 0.00 0.00 3.68
849 2144 5.238868 CCTCATCTCCAGCTTCATACATTTG 59.761 44.000 0.00 0.00 0.00 2.32
850 2145 5.131642 TCCTCATCTCCAGCTTCATACATTT 59.868 40.000 0.00 0.00 0.00 2.32
851 2146 4.657504 TCCTCATCTCCAGCTTCATACATT 59.342 41.667 0.00 0.00 0.00 2.71
852 2147 4.229639 TCCTCATCTCCAGCTTCATACAT 58.770 43.478 0.00 0.00 0.00 2.29
853 2148 3.646534 TCCTCATCTCCAGCTTCATACA 58.353 45.455 0.00 0.00 0.00 2.29
854 2149 4.282957 TCATCCTCATCTCCAGCTTCATAC 59.717 45.833 0.00 0.00 0.00 2.39
855 2150 4.486839 TCATCCTCATCTCCAGCTTCATA 58.513 43.478 0.00 0.00 0.00 2.15
856 2151 3.315596 TCATCCTCATCTCCAGCTTCAT 58.684 45.455 0.00 0.00 0.00 2.57
857 2152 2.755686 TCATCCTCATCTCCAGCTTCA 58.244 47.619 0.00 0.00 0.00 3.02
858 2153 4.066490 CAATCATCCTCATCTCCAGCTTC 58.934 47.826 0.00 0.00 0.00 3.86
859 2154 3.715315 TCAATCATCCTCATCTCCAGCTT 59.285 43.478 0.00 0.00 0.00 3.74
860 2155 3.315596 TCAATCATCCTCATCTCCAGCT 58.684 45.455 0.00 0.00 0.00 4.24
861 2156 3.766068 TCAATCATCCTCATCTCCAGC 57.234 47.619 0.00 0.00 0.00 4.85
862 2157 5.866207 TCAATCAATCATCCTCATCTCCAG 58.134 41.667 0.00 0.00 0.00 3.86
863 2158 5.899631 TCAATCAATCATCCTCATCTCCA 57.100 39.130 0.00 0.00 0.00 3.86
864 2159 5.648526 CCATCAATCAATCATCCTCATCTCC 59.351 44.000 0.00 0.00 0.00 3.71
865 2160 5.124138 GCCATCAATCAATCATCCTCATCTC 59.876 44.000 0.00 0.00 0.00 2.75
866 2161 5.010933 GCCATCAATCAATCATCCTCATCT 58.989 41.667 0.00 0.00 0.00 2.90
944 2396 3.791320 AGAGGTAACCATGACTGGAAGA 58.209 45.455 0.00 0.00 46.37 2.87
947 2399 8.008332 TGTTATATAGAGGTAACCATGACTGGA 58.992 37.037 0.00 0.00 46.37 3.86
1170 2648 3.603532 TCACCAGCATGAATCTTCTCAC 58.396 45.455 0.00 0.00 39.69 3.51
1305 2783 2.575993 CAGAGGGCTGTCGGTGAG 59.424 66.667 0.00 0.00 37.37 3.51
1343 2825 2.225791 CTCCGATGAAGGGCACGACA 62.226 60.000 0.00 0.00 0.00 4.35
1370 2852 2.099994 GAGGAAGTCGAGGTCTCCG 58.900 63.158 0.00 0.00 0.00 4.63
1478 2960 4.577246 GGCTCGCGGCAGAGGTAG 62.577 72.222 18.87 2.61 44.01 3.18
1557 3042 1.493950 CTGAATGCATCGTCGAGGGC 61.494 60.000 9.19 11.44 0.00 5.19
1610 3095 3.456277 ACTGGAGATAATGGTCCCAGAAC 59.544 47.826 13.00 0.00 45.35 3.01
1751 3236 2.107366 CCACTCTTCTCCTCCTCTTCC 58.893 57.143 0.00 0.00 0.00 3.46
1987 7046 4.402155 AGAATGCACCTCAGAACTCTAGAG 59.598 45.833 18.49 18.49 0.00 2.43
2107 7171 2.031120 CTTTTCACAAAGGCCAGGTCA 58.969 47.619 5.01 0.00 36.48 4.02
2117 7181 4.705337 ACCGCAACTAACTTTTCACAAA 57.295 36.364 0.00 0.00 0.00 2.83
2138 7202 5.613329 ACACAAACTGATCTTTACCGGTTA 58.387 37.500 15.04 0.00 32.13 2.85
2139 7203 4.457466 ACACAAACTGATCTTTACCGGTT 58.543 39.130 15.04 0.00 33.66 4.44
2140 7204 4.081322 ACACAAACTGATCTTTACCGGT 57.919 40.909 13.98 13.98 0.00 5.28
2188 7252 9.142014 TGATATCAATATTTTGGGTACAAAGGG 57.858 33.333 1.98 0.00 46.37 3.95
2215 7291 3.685756 GCTGCATGCAATTGGTAACATTT 59.314 39.130 22.88 0.00 44.83 2.32
2266 7342 2.290641 GGTTGTGTGAATGCTTCGACTT 59.709 45.455 0.00 0.00 0.00 3.01
2302 7378 7.013369 GCCTTTCTTTGTTTTCTCTTCCTCTTA 59.987 37.037 0.00 0.00 0.00 2.10
2413 7489 6.308766 GTGCCATACATGAGTGTTTTGATTTC 59.691 38.462 0.00 0.00 39.77 2.17
2473 7550 1.474879 GCTCACACTCCACCTCTAGTC 59.525 57.143 0.00 0.00 0.00 2.59
2475 7552 1.550327 TGCTCACACTCCACCTCTAG 58.450 55.000 0.00 0.00 0.00 2.43
2477 7554 0.394565 GTTGCTCACACTCCACCTCT 59.605 55.000 0.00 0.00 0.00 3.69
2492 7569 4.372656 GGAGACTCCACTATACATGTTGC 58.627 47.826 17.10 0.00 36.28 4.17
2499 7576 2.022195 TGTGCGGAGACTCCACTATAC 58.978 52.381 21.49 11.75 35.91 1.47
2506 7751 2.890808 TATTGATGTGCGGAGACTCC 57.109 50.000 11.87 11.87 0.00 3.85
2519 7764 6.323996 TCTTCTCGTACCCATCACTTATTGAT 59.676 38.462 0.00 0.00 46.75 2.57
2530 7775 3.053544 TCTCTTCCTCTTCTCGTACCCAT 60.054 47.826 0.00 0.00 0.00 4.00
2541 7786 3.458189 CGTGTGTTGTTCTCTTCCTCTT 58.542 45.455 0.00 0.00 0.00 2.85
2547 7792 1.157870 CGGGCGTGTGTTGTTCTCTT 61.158 55.000 0.00 0.00 0.00 2.85
2612 7857 1.135199 CCATTCACATCCTTGCTGCAC 60.135 52.381 0.00 0.00 0.00 4.57
2617 7862 3.128242 CAGAAGACCATTCACATCCTTGC 59.872 47.826 0.00 0.00 0.00 4.01
2622 7867 7.373493 ACAAATTTCAGAAGACCATTCACATC 58.627 34.615 0.00 0.00 0.00 3.06
2701 7947 7.938140 TCCATCTTCTAAACAATTTACTGGG 57.062 36.000 0.00 0.00 0.00 4.45
2721 7968 5.067936 CGGTCTACACTGACTAGATTTCCAT 59.932 44.000 0.00 0.00 37.16 3.41
2750 7997 2.278923 TCGTGTCGCAAACTCGCA 60.279 55.556 5.98 0.00 42.92 5.10
2755 8002 2.034842 CGGATATTCTCGTGTCGCAAAC 60.035 50.000 0.00 0.00 0.00 2.93
2756 8003 2.190161 CGGATATTCTCGTGTCGCAAA 58.810 47.619 0.00 0.00 0.00 3.68
2757 8004 1.535226 CCGGATATTCTCGTGTCGCAA 60.535 52.381 0.00 0.00 0.00 4.85
2758 8005 0.030235 CCGGATATTCTCGTGTCGCA 59.970 55.000 0.00 0.00 0.00 5.10
2759 8006 0.030369 ACCGGATATTCTCGTGTCGC 59.970 55.000 9.46 0.00 0.00 5.19
2760 8007 2.033049 AGAACCGGATATTCTCGTGTCG 59.967 50.000 9.46 0.00 30.33 4.35
2771 8018 6.781014 GGTCATATATATGGGAGAACCGGATA 59.219 42.308 20.18 0.00 44.64 2.59
2784 8031 6.450545 CGGTGGCTGATAGGTCATATATATG 58.549 44.000 15.47 15.47 32.98 1.78
2834 8083 3.009473 ACATGATGGTGCCAGAAACTACT 59.991 43.478 0.00 0.00 0.00 2.57
2878 8127 0.979709 TCTCCTGCTCATGGGTGGAG 60.980 60.000 22.77 22.77 44.00 3.86
2886 8135 2.803030 ACAATTGCTCTCCTGCTCAT 57.197 45.000 5.05 0.00 0.00 2.90
2887 8136 2.555325 CAAACAATTGCTCTCCTGCTCA 59.445 45.455 5.05 0.00 0.00 4.26
2902 8151 2.978156 AGGCAAGAGGATCCAAACAA 57.022 45.000 15.82 0.00 33.66 2.83
2904 8153 2.893489 ACAAAGGCAAGAGGATCCAAAC 59.107 45.455 15.82 5.00 33.66 2.93
2911 8160 3.415212 CAAGATCACAAAGGCAAGAGGA 58.585 45.455 0.00 0.00 0.00 3.71
2945 8194 3.428045 GGCAAGAGGATCCAAACAATTCG 60.428 47.826 15.82 0.00 33.66 3.34
2946 8195 3.766051 AGGCAAGAGGATCCAAACAATTC 59.234 43.478 15.82 0.07 33.66 2.17
2947 8196 3.782992 AGGCAAGAGGATCCAAACAATT 58.217 40.909 15.82 0.00 33.66 2.32
2948 8197 3.463048 AGGCAAGAGGATCCAAACAAT 57.537 42.857 15.82 0.00 33.66 2.71
2949 8198 2.978156 AGGCAAGAGGATCCAAACAA 57.022 45.000 15.82 0.00 33.66 2.83
2950 8199 2.892852 CAAAGGCAAGAGGATCCAAACA 59.107 45.455 15.82 0.00 33.66 2.83
2951 8200 2.893489 ACAAAGGCAAGAGGATCCAAAC 59.107 45.455 15.82 5.00 33.66 2.93
2952 8201 2.892852 CACAAAGGCAAGAGGATCCAAA 59.107 45.455 15.82 0.00 33.66 3.28
2953 8202 2.108075 TCACAAAGGCAAGAGGATCCAA 59.892 45.455 15.82 0.00 33.66 3.53
2954 8203 1.704628 TCACAAAGGCAAGAGGATCCA 59.295 47.619 15.82 0.00 33.66 3.41
2955 8204 2.496899 TCACAAAGGCAAGAGGATCC 57.503 50.000 2.48 2.48 33.66 3.36
2956 8205 3.883669 AGATCACAAAGGCAAGAGGATC 58.116 45.455 0.00 0.00 0.00 3.36
2957 8206 4.015084 CAAGATCACAAAGGCAAGAGGAT 58.985 43.478 0.00 0.00 0.00 3.24
2958 8207 3.415212 CAAGATCACAAAGGCAAGAGGA 58.585 45.455 0.00 0.00 0.00 3.71
2959 8208 2.094854 GCAAGATCACAAAGGCAAGAGG 60.095 50.000 0.00 0.00 0.00 3.69
2960 8209 2.555325 TGCAAGATCACAAAGGCAAGAG 59.445 45.455 0.00 0.00 0.00 2.85
2961 8210 2.585330 TGCAAGATCACAAAGGCAAGA 58.415 42.857 0.00 0.00 0.00 3.02
2962 8211 3.508762 GATGCAAGATCACAAAGGCAAG 58.491 45.455 0.00 0.00 34.64 4.01
2963 8212 2.095110 CGATGCAAGATCACAAAGGCAA 60.095 45.455 0.00 0.00 34.64 4.52
2964 8213 1.469703 CGATGCAAGATCACAAAGGCA 59.530 47.619 0.00 0.00 35.54 4.75
2965 8214 1.202222 CCGATGCAAGATCACAAAGGC 60.202 52.381 0.00 0.00 0.00 4.35
2966 8215 2.358957 TCCGATGCAAGATCACAAAGG 58.641 47.619 0.00 0.00 0.00 3.11
2967 8216 4.424061 TTTCCGATGCAAGATCACAAAG 57.576 40.909 0.00 0.00 0.00 2.77
2968 8217 4.321156 CCTTTTCCGATGCAAGATCACAAA 60.321 41.667 0.00 0.00 0.00 2.83
2969 8218 3.191162 CCTTTTCCGATGCAAGATCACAA 59.809 43.478 0.00 0.00 0.00 3.33
2970 8219 2.749076 CCTTTTCCGATGCAAGATCACA 59.251 45.455 0.00 0.00 0.00 3.58
2971 8220 2.478539 GCCTTTTCCGATGCAAGATCAC 60.479 50.000 0.00 0.00 0.00 3.06
2972 8221 1.745087 GCCTTTTCCGATGCAAGATCA 59.255 47.619 0.00 0.00 0.00 2.92
2973 8222 1.268234 CGCCTTTTCCGATGCAAGATC 60.268 52.381 0.00 0.00 0.00 2.75
2974 8223 0.734889 CGCCTTTTCCGATGCAAGAT 59.265 50.000 0.00 0.00 0.00 2.40
2975 8224 0.321210 TCGCCTTTTCCGATGCAAGA 60.321 50.000 0.00 0.00 0.00 3.02
2976 8225 0.521291 TTCGCCTTTTCCGATGCAAG 59.479 50.000 0.00 0.00 34.35 4.01
2977 8226 1.173043 ATTCGCCTTTTCCGATGCAA 58.827 45.000 0.00 0.00 34.35 4.08
2978 8227 1.173043 AATTCGCCTTTTCCGATGCA 58.827 45.000 0.00 0.00 34.35 3.96
2979 8228 2.287009 CCTAATTCGCCTTTTCCGATGC 60.287 50.000 0.00 0.00 34.35 3.91
2980 8229 2.943033 ACCTAATTCGCCTTTTCCGATG 59.057 45.455 0.00 0.00 34.35 3.84
2981 8230 3.277142 ACCTAATTCGCCTTTTCCGAT 57.723 42.857 0.00 0.00 34.35 4.18
2982 8231 2.773993 ACCTAATTCGCCTTTTCCGA 57.226 45.000 0.00 0.00 0.00 4.55
2983 8232 3.439129 AGAAACCTAATTCGCCTTTTCCG 59.561 43.478 0.00 0.00 34.46 4.30
2984 8233 4.457949 TCAGAAACCTAATTCGCCTTTTCC 59.542 41.667 0.00 0.00 34.46 3.13
2985 8234 5.622770 TCAGAAACCTAATTCGCCTTTTC 57.377 39.130 0.00 0.00 34.46 2.29
2986 8235 6.399639 TTTCAGAAACCTAATTCGCCTTTT 57.600 33.333 0.00 0.00 34.46 2.27
2987 8236 6.040504 ACTTTTCAGAAACCTAATTCGCCTTT 59.959 34.615 0.00 0.00 34.46 3.11
2988 8237 5.535030 ACTTTTCAGAAACCTAATTCGCCTT 59.465 36.000 0.00 0.00 34.46 4.35
2989 8238 5.048713 CACTTTTCAGAAACCTAATTCGCCT 60.049 40.000 0.00 0.00 34.46 5.52
2990 8239 5.154222 CACTTTTCAGAAACCTAATTCGCC 58.846 41.667 0.00 0.00 34.46 5.54
2991 8240 4.617223 GCACTTTTCAGAAACCTAATTCGC 59.383 41.667 0.00 0.00 34.46 4.70
2992 8241 6.002062 AGCACTTTTCAGAAACCTAATTCG 57.998 37.500 0.00 0.00 34.46 3.34
3004 8253 7.598869 TGAGTAGTTACATGTAGCACTTTTCAG 59.401 37.037 20.15 0.00 0.00 3.02
3007 8256 7.442656 AGTGAGTAGTTACATGTAGCACTTTT 58.557 34.615 20.15 7.63 30.66 2.27
3012 8261 6.988522 TGAAAGTGAGTAGTTACATGTAGCA 58.011 36.000 20.15 5.35 0.00 3.49
3018 8267 8.314021 TGTGATGATGAAAGTGAGTAGTTACAT 58.686 33.333 0.00 0.00 0.00 2.29
3026 8275 4.573900 GACCTGTGATGATGAAAGTGAGT 58.426 43.478 0.00 0.00 0.00 3.41
3040 8289 3.269538 TGGAAAGAAAACGACCTGTGA 57.730 42.857 0.00 0.00 0.00 3.58
3055 8304 1.881925 CGATGCCACCTGACTTGGAAA 60.882 52.381 0.00 0.00 36.02 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.