Multiple sequence alignment - TraesCS2A01G537200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G537200 chr2A 100.000 6401 0 0 1 6401 751011829 751018229 0.000000e+00 11821.0
1 TraesCS2A01G537200 chr2A 97.128 3203 83 7 3198 6399 751048489 751051683 0.000000e+00 5397.0
2 TraesCS2A01G537200 chr2A 87.479 1789 150 26 3131 4876 751173277 751175034 0.000000e+00 1995.0
3 TraesCS2A01G537200 chr2A 86.735 1372 160 13 1508 2863 751037310 751038675 0.000000e+00 1506.0
4 TraesCS2A01G537200 chr2A 87.959 1063 119 5 1508 2566 751171971 751173028 0.000000e+00 1245.0
5 TraesCS2A01G537200 chr2A 81.384 1402 190 46 3141 4496 719737927 719736551 0.000000e+00 1077.0
6 TraesCS2A01G537200 chr2A 93.351 737 34 6 3543 4264 751055333 751056069 0.000000e+00 1075.0
7 TraesCS2A01G537200 chr2A 83.953 430 63 2 4568 4996 751057216 751057640 2.150000e-109 407.0
8 TraesCS2A01G537200 chr2A 93.277 119 8 0 1 119 25350711 25350593 6.600000e-40 176.0
9 TraesCS2A01G537200 chr5A 98.123 1385 22 3 5020 6401 475790842 475792225 0.000000e+00 2410.0
10 TraesCS2A01G537200 chr5A 97.174 1380 35 3 5022 6399 588580314 588581691 0.000000e+00 2329.0
11 TraesCS2A01G537200 chr1D 97.395 1382 31 4 5022 6401 253514340 253512962 0.000000e+00 2348.0
12 TraesCS2A01G537200 chr1D 97.055 1392 29 3 5019 6399 308900040 308901430 0.000000e+00 2333.0
13 TraesCS2A01G537200 chr1A 96.307 1381 28 3 5021 6399 586905506 586904147 0.000000e+00 2246.0
14 TraesCS2A01G537200 chr1A 97.776 1079 21 3 5019 6094 292070969 292069891 0.000000e+00 1857.0
15 TraesCS2A01G537200 chr1A 95.636 275 7 2 6125 6399 292069924 292069655 2.740000e-118 436.0
16 TraesCS2A01G537200 chr4D 95.043 1392 38 5 5011 6399 196577511 196576148 0.000000e+00 2159.0
17 TraesCS2A01G537200 chr4D 94.152 1385 37 8 5021 6399 497737788 497736442 0.000000e+00 2069.0
18 TraesCS2A01G537200 chr5D 94.942 1384 45 8 5021 6399 66240793 66239430 0.000000e+00 2145.0
19 TraesCS2A01G537200 chr4A 94.820 1390 45 12 5020 6399 597299562 597300934 0.000000e+00 2143.0
20 TraesCS2A01G537200 chr4A 92.742 124 8 1 1 123 617910373 617910496 1.830000e-40 178.0
21 TraesCS2A01G537200 chr2B 85.998 1664 187 26 1508 3133 758896495 758898150 0.000000e+00 1740.0
22 TraesCS2A01G537200 chr2B 89.039 1259 114 13 3198 4439 758898313 758899564 0.000000e+00 1539.0
23 TraesCS2A01G537200 chr2B 85.900 1383 155 25 3149 4496 706790898 706789521 0.000000e+00 1437.0
24 TraesCS2A01G537200 chr2B 82.445 1669 244 27 1504 3133 706792754 706791096 0.000000e+00 1413.0
25 TraesCS2A01G537200 chr2B 80.910 1582 251 32 1268 2820 758666090 758667649 0.000000e+00 1201.0
26 TraesCS2A01G537200 chr2B 80.162 1361 231 26 1463 2798 707242645 707241299 0.000000e+00 981.0
27 TraesCS2A01G537200 chr2B 87.665 454 46 3 4555 5004 758899670 758900117 2.650000e-143 520.0
28 TraesCS2A01G537200 chr2B 74.094 745 149 34 3704 4438 706731247 706730537 3.800000e-67 267.0
29 TraesCS2A01G537200 chr2B 79.147 211 22 12 982 1188 706792886 706792694 6.740000e-25 126.0
30 TraesCS2A01G537200 chr2B 86.735 98 10 2 4568 4664 706921043 706920948 8.780000e-19 106.0
31 TraesCS2A01G537200 chr2B 97.619 42 1 0 540 581 758599302 758599343 8.900000e-09 73.1
32 TraesCS2A01G537200 chr2B 88.889 54 5 1 1090 1143 758796475 758796423 1.490000e-06 65.8
33 TraesCS2A01G537200 chr2B 100.000 30 0 0 557 586 706793358 706793329 8.970000e-04 56.5
34 TraesCS2A01G537200 chr2B 96.875 32 0 1 559 590 757908616 757908586 1.200000e-02 52.8
35 TraesCS2A01G537200 chr2B 96.774 31 1 0 557 587 758673664 758673694 1.200000e-02 52.8
36 TraesCS2A01G537200 chr2D 89.073 1327 129 5 1535 2849 619573158 619574480 0.000000e+00 1633.0
37 TraesCS2A01G537200 chr2D 89.232 1263 112 14 3198 4442 619575040 619576296 0.000000e+00 1557.0
38 TraesCS2A01G537200 chr2D 82.524 1339 203 18 1534 2863 585696165 585694849 0.000000e+00 1147.0
39 TraesCS2A01G537200 chr2D 81.053 1462 240 20 1384 2820 619565913 619567362 0.000000e+00 1131.0
40 TraesCS2A01G537200 chr2D 81.540 1403 187 45 3140 4495 585694366 585692989 0.000000e+00 1090.0
41 TraesCS2A01G537200 chr2D 81.734 1292 215 17 1534 2817 585740440 585739162 0.000000e+00 1059.0
42 TraesCS2A01G537200 chr2D 82.493 1011 136 18 3240 4232 585738381 585737394 0.000000e+00 848.0
43 TraesCS2A01G537200 chr2D 81.943 875 136 12 1474 2333 585756441 585755574 0.000000e+00 721.0
44 TraesCS2A01G537200 chr2D 88.274 452 48 1 4570 5021 619576413 619576859 2.630000e-148 536.0
45 TraesCS2A01G537200 chr2D 89.041 292 19 6 848 1138 619565330 619565609 3.670000e-92 350.0
46 TraesCS2A01G537200 chr2D 77.674 430 60 23 4568 4996 585684761 585684367 4.990000e-56 230.0
47 TraesCS2A01G537200 chr2D 86.179 123 11 4 3009 3127 619574689 619574809 1.870000e-25 128.0
48 TraesCS2A01G537200 chr2D 78.704 216 24 13 989 1188 585740620 585740411 2.420000e-24 124.0
49 TraesCS2A01G537200 chr2D 98.039 51 1 0 540 590 619565008 619565058 8.840000e-14 89.8
50 TraesCS2A01G537200 chr2D 100.000 29 0 0 559 587 585741055 585741027 3.000000e-03 54.7
51 TraesCS2A01G537200 chr3B 93.443 122 8 0 1 122 222147106 222146985 1.420000e-41 182.0
52 TraesCS2A01G537200 chr3B 93.388 121 8 0 1 121 124779958 124779838 5.100000e-41 180.0
53 TraesCS2A01G537200 chr3B 92.623 122 9 0 1 122 704288711 704288590 6.600000e-40 176.0
54 TraesCS2A01G537200 chr1B 92.683 123 8 1 1 123 188259786 188259665 6.600000e-40 176.0
55 TraesCS2A01G537200 chr7B 93.162 117 8 0 3 119 351929705 351929821 8.530000e-39 172.0
56 TraesCS2A01G537200 chr5B 92.500 120 9 0 1 120 50496695 50496814 8.530000e-39 172.0
57 TraesCS2A01G537200 chr3A 91.870 123 10 0 1 123 580560501 580560623 8.530000e-39 172.0
58 TraesCS2A01G537200 chr7A 100.000 32 0 0 4511 4542 635689544 635689513 6.930000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G537200 chr2A 751011829 751018229 6400 False 11821.000000 11821 100.000000 1 6401 1 chr2A.!!$F1 6400
1 TraesCS2A01G537200 chr2A 751048489 751057640 9151 False 2293.000000 5397 91.477333 3198 6399 3 chr2A.!!$F3 3201
2 TraesCS2A01G537200 chr2A 751171971 751175034 3063 False 1620.000000 1995 87.719000 1508 4876 2 chr2A.!!$F4 3368
3 TraesCS2A01G537200 chr2A 751037310 751038675 1365 False 1506.000000 1506 86.735000 1508 2863 1 chr2A.!!$F2 1355
4 TraesCS2A01G537200 chr2A 719736551 719737927 1376 True 1077.000000 1077 81.384000 3141 4496 1 chr2A.!!$R2 1355
5 TraesCS2A01G537200 chr5A 475790842 475792225 1383 False 2410.000000 2410 98.123000 5020 6401 1 chr5A.!!$F1 1381
6 TraesCS2A01G537200 chr5A 588580314 588581691 1377 False 2329.000000 2329 97.174000 5022 6399 1 chr5A.!!$F2 1377
7 TraesCS2A01G537200 chr1D 253512962 253514340 1378 True 2348.000000 2348 97.395000 5022 6401 1 chr1D.!!$R1 1379
8 TraesCS2A01G537200 chr1D 308900040 308901430 1390 False 2333.000000 2333 97.055000 5019 6399 1 chr1D.!!$F1 1380
9 TraesCS2A01G537200 chr1A 586904147 586905506 1359 True 2246.000000 2246 96.307000 5021 6399 1 chr1A.!!$R1 1378
10 TraesCS2A01G537200 chr1A 292069655 292070969 1314 True 1146.500000 1857 96.706000 5019 6399 2 chr1A.!!$R2 1380
11 TraesCS2A01G537200 chr4D 196576148 196577511 1363 True 2159.000000 2159 95.043000 5011 6399 1 chr4D.!!$R1 1388
12 TraesCS2A01G537200 chr4D 497736442 497737788 1346 True 2069.000000 2069 94.152000 5021 6399 1 chr4D.!!$R2 1378
13 TraesCS2A01G537200 chr5D 66239430 66240793 1363 True 2145.000000 2145 94.942000 5021 6399 1 chr5D.!!$R1 1378
14 TraesCS2A01G537200 chr4A 597299562 597300934 1372 False 2143.000000 2143 94.820000 5020 6399 1 chr4A.!!$F1 1379
15 TraesCS2A01G537200 chr2B 758896495 758900117 3622 False 1266.333333 1740 87.567333 1508 5004 3 chr2B.!!$F4 3496
16 TraesCS2A01G537200 chr2B 758666090 758667649 1559 False 1201.000000 1201 80.910000 1268 2820 1 chr2B.!!$F2 1552
17 TraesCS2A01G537200 chr2B 707241299 707242645 1346 True 981.000000 981 80.162000 1463 2798 1 chr2B.!!$R3 1335
18 TraesCS2A01G537200 chr2B 706789521 706793358 3837 True 758.125000 1437 86.873000 557 4496 4 chr2B.!!$R6 3939
19 TraesCS2A01G537200 chr2B 706730537 706731247 710 True 267.000000 267 74.094000 3704 4438 1 chr2B.!!$R1 734
20 TraesCS2A01G537200 chr2D 585692989 585696165 3176 True 1118.500000 1147 82.032000 1534 4495 2 chr2D.!!$R3 2961
21 TraesCS2A01G537200 chr2D 619573158 619576859 3701 False 963.500000 1633 88.189500 1535 5021 4 chr2D.!!$F2 3486
22 TraesCS2A01G537200 chr2D 585755574 585756441 867 True 721.000000 721 81.943000 1474 2333 1 chr2D.!!$R2 859
23 TraesCS2A01G537200 chr2D 619565008 619567362 2354 False 523.600000 1131 89.377667 540 2820 3 chr2D.!!$F1 2280
24 TraesCS2A01G537200 chr2D 585737394 585741055 3661 True 521.425000 1059 85.732750 559 4232 4 chr2D.!!$R4 3673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
643 785 0.102481 CTGCTGCATGCTGAAATCCC 59.898 55.0 26.71 9.35 42.27 3.85 F
1360 1702 0.032403 GCAAGCCACACATGCAGAAA 59.968 50.0 0.00 0.00 39.81 2.52 F
2161 2525 0.180406 ATGGTGTATTGGTCTCCGCC 59.820 55.0 0.00 0.00 0.00 6.13 F
2163 2527 0.180406 GGTGTATTGGTCTCCGCCAT 59.820 55.0 0.00 0.00 38.48 4.40 F
2385 2749 0.321034 TGATCGCTATGCCTCATGCC 60.321 55.0 0.00 0.00 40.16 4.40 F
3284 4179 0.392193 CGCTGAAGATTGCACTCCCT 60.392 55.0 0.00 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2276 2640 0.179084 CCATACCCGTGTAGTGCAGG 60.179 60.000 0.0 0.0 0.00 4.85 R
3264 4159 1.372087 GGGAGTGCAATCTTCAGCGG 61.372 60.000 14.6 0.0 0.00 5.52 R
3420 4315 0.035317 TGGTGCTTGCCTGTCAGTAG 59.965 55.000 0.0 0.0 0.00 2.57 R
3584 4487 0.460987 CTACGCCAAAGCCTCCTCTG 60.461 60.000 0.0 0.0 34.57 3.35 R
3857 4767 4.752661 TTGTTGGGCAAGTATTCGTAAC 57.247 40.909 0.0 0.0 32.52 2.50 R
6007 6952 6.186957 TCAATAGCCTAATTTGACCACACAT 58.813 36.000 0.0 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.610637 GGCACGGCCCGTATAATAA 57.389 52.632 9.25 0.00 44.06 1.40
32 33 2.103537 GGCACGGCCCGTATAATAAT 57.896 50.000 9.25 0.00 44.06 1.28
33 34 2.004733 GGCACGGCCCGTATAATAATC 58.995 52.381 9.25 0.00 44.06 1.75
34 35 2.613474 GGCACGGCCCGTATAATAATCA 60.613 50.000 9.25 0.00 44.06 2.57
35 36 3.267483 GCACGGCCCGTATAATAATCAT 58.733 45.455 9.25 0.00 38.32 2.45
36 37 3.063452 GCACGGCCCGTATAATAATCATG 59.937 47.826 9.25 0.00 38.32 3.07
37 38 3.063452 CACGGCCCGTATAATAATCATGC 59.937 47.826 9.25 0.00 38.32 4.06
38 39 2.612212 CGGCCCGTATAATAATCATGCC 59.388 50.000 0.00 0.00 0.00 4.40
39 40 3.681594 CGGCCCGTATAATAATCATGCCT 60.682 47.826 0.00 0.00 34.25 4.75
40 41 3.877508 GGCCCGTATAATAATCATGCCTC 59.122 47.826 0.00 0.00 33.64 4.70
41 42 3.555956 GCCCGTATAATAATCATGCCTCG 59.444 47.826 0.00 0.00 0.00 4.63
42 43 4.119862 CCCGTATAATAATCATGCCTCGG 58.880 47.826 0.00 0.00 35.02 4.63
43 44 3.555956 CCGTATAATAATCATGCCTCGGC 59.444 47.826 0.00 0.00 42.35 5.54
44 45 3.242944 CGTATAATAATCATGCCTCGGCG 59.757 47.826 0.00 0.00 45.51 6.46
45 46 2.093306 TAATAATCATGCCTCGGCGG 57.907 50.000 7.21 0.00 45.51 6.13
46 47 0.606401 AATAATCATGCCTCGGCGGG 60.606 55.000 7.21 1.99 45.51 6.13
69 70 2.589540 CCAGGCCAGGCACGATTA 59.410 61.111 15.19 0.00 0.00 1.75
70 71 1.077787 CCAGGCCAGGCACGATTAA 60.078 57.895 15.19 0.00 0.00 1.40
71 72 1.097547 CCAGGCCAGGCACGATTAAG 61.098 60.000 15.19 0.00 0.00 1.85
72 73 0.107703 CAGGCCAGGCACGATTAAGA 60.108 55.000 15.19 0.00 0.00 2.10
73 74 0.839946 AGGCCAGGCACGATTAAGAT 59.160 50.000 15.19 0.00 0.00 2.40
74 75 0.947244 GGCCAGGCACGATTAAGATG 59.053 55.000 15.19 0.00 0.00 2.90
75 76 0.947244 GCCAGGCACGATTAAGATGG 59.053 55.000 6.55 0.00 0.00 3.51
76 77 1.597742 CCAGGCACGATTAAGATGGG 58.402 55.000 0.00 0.00 0.00 4.00
77 78 0.947244 CAGGCACGATTAAGATGGGC 59.053 55.000 0.00 0.00 0.00 5.36
78 79 0.179018 AGGCACGATTAAGATGGGCC 60.179 55.000 9.09 9.09 40.18 5.80
79 80 1.507141 GGCACGATTAAGATGGGCCG 61.507 60.000 0.00 0.00 0.00 6.13
80 81 0.814010 GCACGATTAAGATGGGCCGT 60.814 55.000 0.00 0.00 0.00 5.68
81 82 0.937304 CACGATTAAGATGGGCCGTG 59.063 55.000 1.02 0.00 40.70 4.94
82 83 0.814010 ACGATTAAGATGGGCCGTGC 60.814 55.000 1.02 0.00 0.00 5.34
119 120 3.421567 CCCCTTTGGCCAGCTATAC 57.578 57.895 5.11 0.00 0.00 1.47
120 121 0.550914 CCCCTTTGGCCAGCTATACA 59.449 55.000 5.11 0.00 0.00 2.29
121 122 1.145738 CCCCTTTGGCCAGCTATACAT 59.854 52.381 5.11 0.00 0.00 2.29
122 123 2.508526 CCCTTTGGCCAGCTATACATC 58.491 52.381 5.11 0.00 0.00 3.06
123 124 2.107204 CCCTTTGGCCAGCTATACATCT 59.893 50.000 5.11 0.00 0.00 2.90
124 125 3.435601 CCCTTTGGCCAGCTATACATCTT 60.436 47.826 5.11 0.00 0.00 2.40
125 126 4.210331 CCTTTGGCCAGCTATACATCTTT 58.790 43.478 5.11 0.00 0.00 2.52
126 127 4.037208 CCTTTGGCCAGCTATACATCTTTG 59.963 45.833 5.11 0.00 0.00 2.77
127 128 3.931907 TGGCCAGCTATACATCTTTGT 57.068 42.857 0.00 0.00 39.98 2.83
128 129 3.544684 TGGCCAGCTATACATCTTTGTG 58.455 45.455 0.00 0.00 36.53 3.33
129 130 3.199727 TGGCCAGCTATACATCTTTGTGA 59.800 43.478 0.00 0.00 36.53 3.58
130 131 3.812053 GGCCAGCTATACATCTTTGTGAG 59.188 47.826 0.00 0.00 36.53 3.51
131 132 3.249559 GCCAGCTATACATCTTTGTGAGC 59.750 47.826 0.00 6.70 42.28 4.26
132 133 4.445453 CCAGCTATACATCTTTGTGAGCA 58.555 43.478 13.73 0.00 43.41 4.26
133 134 5.061853 CCAGCTATACATCTTTGTGAGCAT 58.938 41.667 13.73 1.89 43.41 3.79
134 135 5.530171 CCAGCTATACATCTTTGTGAGCATT 59.470 40.000 13.73 0.00 43.41 3.56
135 136 6.039047 CCAGCTATACATCTTTGTGAGCATTT 59.961 38.462 13.73 0.00 43.41 2.32
136 137 7.415989 CCAGCTATACATCTTTGTGAGCATTTT 60.416 37.037 13.73 0.00 43.41 1.82
137 138 7.972277 CAGCTATACATCTTTGTGAGCATTTTT 59.028 33.333 13.73 0.00 43.41 1.94
158 159 7.856145 TTTTTGAATGTGTGTTAGCCATTTT 57.144 28.000 0.00 0.00 0.00 1.82
159 160 7.856145 TTTTGAATGTGTGTTAGCCATTTTT 57.144 28.000 0.00 0.00 0.00 1.94
160 161 7.475771 TTTGAATGTGTGTTAGCCATTTTTC 57.524 32.000 0.00 0.00 0.00 2.29
161 162 6.154203 TGAATGTGTGTTAGCCATTTTTCA 57.846 33.333 0.00 0.00 0.00 2.69
162 163 6.577103 TGAATGTGTGTTAGCCATTTTTCAA 58.423 32.000 0.00 0.00 0.00 2.69
163 164 7.044181 TGAATGTGTGTTAGCCATTTTTCAAA 58.956 30.769 0.00 0.00 0.00 2.69
164 165 7.714377 TGAATGTGTGTTAGCCATTTTTCAAAT 59.286 29.630 0.00 0.00 0.00 2.32
165 166 9.202273 GAATGTGTGTTAGCCATTTTTCAAATA 57.798 29.630 0.00 0.00 0.00 1.40
166 167 9.553064 AATGTGTGTTAGCCATTTTTCAAATAA 57.447 25.926 0.00 0.00 0.00 1.40
167 168 8.948631 TGTGTGTTAGCCATTTTTCAAATAAA 57.051 26.923 0.00 0.00 0.00 1.40
168 169 9.553064 TGTGTGTTAGCCATTTTTCAAATAAAT 57.447 25.926 0.00 0.00 0.00 1.40
169 170 9.810231 GTGTGTTAGCCATTTTTCAAATAAATG 57.190 29.630 0.00 0.00 40.81 2.32
170 171 9.553064 TGTGTTAGCCATTTTTCAAATAAATGT 57.447 25.926 0.00 0.00 39.97 2.71
224 225 7.924103 AAAACACGGACATATTTTCTGAAAC 57.076 32.000 1.58 0.00 0.00 2.78
225 226 6.627395 AACACGGACATATTTTCTGAAACA 57.373 33.333 1.58 0.00 0.00 2.83
226 227 5.997385 ACACGGACATATTTTCTGAAACAC 58.003 37.500 1.58 0.00 0.00 3.32
227 228 5.763204 ACACGGACATATTTTCTGAAACACT 59.237 36.000 1.58 0.00 0.00 3.55
228 229 6.932400 ACACGGACATATTTTCTGAAACACTA 59.068 34.615 1.58 0.00 0.00 2.74
229 230 7.117812 ACACGGACATATTTTCTGAAACACTAG 59.882 37.037 1.58 0.00 0.00 2.57
230 231 7.330946 CACGGACATATTTTCTGAAACACTAGA 59.669 37.037 1.58 0.00 0.00 2.43
231 232 8.041323 ACGGACATATTTTCTGAAACACTAGAT 58.959 33.333 1.58 0.00 0.00 1.98
232 233 8.883731 CGGACATATTTTCTGAAACACTAGATT 58.116 33.333 1.58 0.00 0.00 2.40
263 264 8.703823 AAATACGACGTACATTTCTTTTGAAC 57.296 30.769 10.41 0.00 38.30 3.18
264 265 5.978934 ACGACGTACATTTCTTTTGAACT 57.021 34.783 0.00 0.00 38.30 3.01
265 266 8.746922 ATACGACGTACATTTCTTTTGAACTA 57.253 30.769 10.41 0.00 38.30 2.24
266 267 6.870517 ACGACGTACATTTCTTTTGAACTAC 58.129 36.000 0.00 0.00 38.30 2.73
267 268 6.476380 ACGACGTACATTTCTTTTGAACTACA 59.524 34.615 0.00 0.00 38.30 2.74
268 269 6.784227 CGACGTACATTTCTTTTGAACTACAC 59.216 38.462 0.00 0.00 38.30 2.90
269 270 7.515528 CGACGTACATTTCTTTTGAACTACACA 60.516 37.037 0.00 0.00 38.30 3.72
270 271 7.976826 ACGTACATTTCTTTTGAACTACACAA 58.023 30.769 0.00 0.00 38.30 3.33
271 272 8.452534 ACGTACATTTCTTTTGAACTACACAAA 58.547 29.630 0.00 0.00 38.30 2.83
272 273 8.730427 CGTACATTTCTTTTGAACTACACAAAC 58.270 33.333 0.00 0.00 38.30 2.93
273 274 9.562583 GTACATTTCTTTTGAACTACACAAACA 57.437 29.630 0.00 0.00 38.30 2.83
275 276 9.651913 ACATTTCTTTTGAACTACACAAACATT 57.348 25.926 0.00 0.00 38.30 2.71
337 338 9.705290 ATATTTTAAAAGTTGGCGAACATTCTT 57.295 25.926 14.35 4.00 34.17 2.52
338 339 7.835634 TTTTAAAAGTTGGCGAACATTCTTT 57.164 28.000 14.35 9.51 36.15 2.52
339 340 7.835634 TTTAAAAGTTGGCGAACATTCTTTT 57.164 28.000 14.35 12.86 41.64 2.27
340 341 8.928270 TTTAAAAGTTGGCGAACATTCTTTTA 57.072 26.923 14.35 11.98 40.53 1.52
341 342 8.928270 TTAAAAGTTGGCGAACATTCTTTTAA 57.072 26.923 14.35 16.28 43.44 1.52
342 343 6.822073 AAAGTTGGCGAACATTCTTTTAAC 57.178 33.333 14.35 0.00 33.19 2.01
343 344 5.508200 AGTTGGCGAACATTCTTTTAACA 57.492 34.783 14.35 0.00 34.17 2.41
344 345 5.278604 AGTTGGCGAACATTCTTTTAACAC 58.721 37.500 14.35 0.00 34.17 3.32
345 346 5.067283 AGTTGGCGAACATTCTTTTAACACT 59.933 36.000 14.35 0.00 34.17 3.55
346 347 4.854399 TGGCGAACATTCTTTTAACACTG 58.146 39.130 0.00 0.00 0.00 3.66
347 348 3.668656 GGCGAACATTCTTTTAACACTGC 59.331 43.478 0.00 0.00 0.00 4.40
348 349 4.286910 GCGAACATTCTTTTAACACTGCA 58.713 39.130 0.00 0.00 0.00 4.41
349 350 4.917415 GCGAACATTCTTTTAACACTGCAT 59.083 37.500 0.00 0.00 0.00 3.96
350 351 6.083630 GCGAACATTCTTTTAACACTGCATA 58.916 36.000 0.00 0.00 0.00 3.14
351 352 6.580791 GCGAACATTCTTTTAACACTGCATAA 59.419 34.615 0.00 0.00 0.00 1.90
352 353 7.114247 GCGAACATTCTTTTAACACTGCATAAA 59.886 33.333 0.00 0.00 0.00 1.40
353 354 8.417176 CGAACATTCTTTTAACACTGCATAAAC 58.583 33.333 0.00 0.00 0.00 2.01
354 355 9.243637 GAACATTCTTTTAACACTGCATAAACA 57.756 29.630 0.00 0.00 0.00 2.83
355 356 9.593134 AACATTCTTTTAACACTGCATAAACAA 57.407 25.926 0.00 0.00 0.00 2.83
356 357 9.762933 ACATTCTTTTAACACTGCATAAACAAT 57.237 25.926 0.00 0.00 0.00 2.71
385 386 9.869844 TTTTAAACTGTCACAAACATGTTTTTG 57.130 25.926 24.96 24.96 38.72 2.44
386 387 6.479095 AAACTGTCACAAACATGTTTTTGG 57.521 33.333 28.29 18.66 40.25 3.28
387 388 5.398603 ACTGTCACAAACATGTTTTTGGA 57.601 34.783 28.29 19.56 40.25 3.53
388 389 5.788450 ACTGTCACAAACATGTTTTTGGAA 58.212 33.333 28.29 18.97 40.25 3.53
389 390 6.226787 ACTGTCACAAACATGTTTTTGGAAA 58.773 32.000 28.29 17.21 40.25 3.13
390 391 6.147000 ACTGTCACAAACATGTTTTTGGAAAC 59.853 34.615 28.29 21.60 40.25 2.78
401 402 5.771602 GTTTTTGGAAACACGTGAACATT 57.228 34.783 25.01 11.22 43.65 2.71
402 403 6.159419 GTTTTTGGAAACACGTGAACATTT 57.841 33.333 25.01 12.25 43.65 2.32
403 404 6.594886 GTTTTTGGAAACACGTGAACATTTT 58.405 32.000 25.01 11.84 43.65 1.82
404 405 6.787085 TTTTGGAAACACGTGAACATTTTT 57.213 29.167 25.01 11.05 42.67 1.94
405 406 7.884816 TTTTGGAAACACGTGAACATTTTTA 57.115 28.000 25.01 2.84 42.67 1.52
406 407 7.884816 TTTGGAAACACGTGAACATTTTTAA 57.115 28.000 25.01 8.48 42.67 1.52
407 408 7.884816 TTGGAAACACGTGAACATTTTTAAA 57.115 28.000 25.01 7.51 42.67 1.52
408 409 7.884816 TGGAAACACGTGAACATTTTTAAAA 57.115 28.000 25.01 0.00 33.40 1.52
409 410 8.306680 TGGAAACACGTGAACATTTTTAAAAA 57.693 26.923 25.01 15.38 33.40 1.94
410 411 8.436200 TGGAAACACGTGAACATTTTTAAAAAG 58.564 29.630 25.01 12.24 33.40 2.27
411 412 8.436970 GGAAACACGTGAACATTTTTAAAAAGT 58.563 29.630 25.01 12.77 0.00 2.66
412 413 9.800299 GAAACACGTGAACATTTTTAAAAAGTT 57.200 25.926 25.01 18.74 0.00 2.66
413 414 9.587461 AAACACGTGAACATTTTTAAAAAGTTG 57.413 25.926 25.01 17.28 0.00 3.16
414 415 7.230914 ACACGTGAACATTTTTAAAAAGTTGC 58.769 30.769 25.01 16.37 0.00 4.17
415 416 6.403777 CACGTGAACATTTTTAAAAAGTTGCG 59.596 34.615 22.16 23.28 0.00 4.85
416 417 5.893726 CGTGAACATTTTTAAAAAGTTGCGG 59.106 36.000 22.16 10.89 0.00 5.69
417 418 6.237595 CGTGAACATTTTTAAAAAGTTGCGGA 60.238 34.615 22.16 1.61 0.00 5.54
418 419 7.457060 GTGAACATTTTTAAAAAGTTGCGGAA 58.543 30.769 22.16 0.00 0.00 4.30
419 420 7.958025 GTGAACATTTTTAAAAAGTTGCGGAAA 59.042 29.630 22.16 0.44 0.00 3.13
420 421 8.171840 TGAACATTTTTAAAAAGTTGCGGAAAG 58.828 29.630 22.16 7.20 0.00 2.62
421 422 7.835634 ACATTTTTAAAAAGTTGCGGAAAGA 57.164 28.000 17.72 0.00 0.00 2.52
422 423 8.257830 ACATTTTTAAAAAGTTGCGGAAAGAA 57.742 26.923 17.72 0.00 0.00 2.52
423 424 8.888716 ACATTTTTAAAAAGTTGCGGAAAGAAT 58.111 25.926 17.72 0.00 0.00 2.40
424 425 9.715123 CATTTTTAAAAAGTTGCGGAAAGAATT 57.285 25.926 17.72 0.00 0.00 2.17
431 432 7.835634 AAAGTTGCGGAAAGAATTTTTAACA 57.164 28.000 0.00 0.00 39.27 2.41
432 433 7.463469 AAGTTGCGGAAAGAATTTTTAACAG 57.537 32.000 0.00 0.00 39.27 3.16
433 434 6.569780 AGTTGCGGAAAGAATTTTTAACAGT 58.430 32.000 0.00 0.00 39.27 3.55
434 435 6.475402 AGTTGCGGAAAGAATTTTTAACAGTG 59.525 34.615 0.00 0.00 39.27 3.66
435 436 4.742659 TGCGGAAAGAATTTTTAACAGTGC 59.257 37.500 0.00 0.00 39.27 4.40
436 437 4.149922 GCGGAAAGAATTTTTAACAGTGCC 59.850 41.667 0.00 0.00 39.27 5.01
437 438 5.528870 CGGAAAGAATTTTTAACAGTGCCT 58.471 37.500 0.00 0.00 39.27 4.75
438 439 6.674066 CGGAAAGAATTTTTAACAGTGCCTA 58.326 36.000 0.00 0.00 39.27 3.93
439 440 6.801862 CGGAAAGAATTTTTAACAGTGCCTAG 59.198 38.462 0.00 0.00 39.27 3.02
440 441 7.308348 CGGAAAGAATTTTTAACAGTGCCTAGA 60.308 37.037 0.00 0.00 39.27 2.43
441 442 8.357402 GGAAAGAATTTTTAACAGTGCCTAGAA 58.643 33.333 0.00 0.00 39.27 2.10
442 443 9.744468 GAAAGAATTTTTAACAGTGCCTAGAAA 57.256 29.630 0.00 0.00 39.27 2.52
535 536 4.983671 AAAAATCTAAAGGATGCGACCC 57.016 40.909 0.00 0.00 34.45 4.46
536 537 2.240493 AATCTAAAGGATGCGACCCG 57.760 50.000 0.00 0.00 34.45 5.28
537 538 0.393077 ATCTAAAGGATGCGACCCGG 59.607 55.000 0.00 0.00 32.69 5.73
538 539 1.887707 CTAAAGGATGCGACCCGGC 60.888 63.158 0.00 0.00 0.00 6.13
613 719 1.450905 GTCGCTGTACTTGTGAACGAC 59.549 52.381 0.00 0.00 41.12 4.34
614 720 0.429736 CGCTGTACTTGTGAACGACG 59.570 55.000 0.00 0.00 0.00 5.12
617 723 0.935831 TGTACTTGTGAACGACGGCG 60.936 55.000 10.39 10.39 44.79 6.46
618 724 0.661187 GTACTTGTGAACGACGGCGA 60.661 55.000 22.49 0.00 41.64 5.54
620 726 1.282248 ACTTGTGAACGACGGCGATG 61.282 55.000 22.49 7.88 41.64 3.84
622 728 2.809601 GTGAACGACGGCGATGCT 60.810 61.111 22.49 0.00 41.64 3.79
623 729 2.809174 TGAACGACGGCGATGCTG 60.809 61.111 22.49 0.00 41.64 4.41
624 730 4.210304 GAACGACGGCGATGCTGC 62.210 66.667 22.49 0.00 38.71 5.25
643 785 0.102481 CTGCTGCATGCTGAAATCCC 59.898 55.000 26.71 9.35 42.27 3.85
655 797 6.012658 TGCTGAAATCCCGAATATTTATGC 57.987 37.500 0.00 0.00 0.00 3.14
661 803 4.974645 TCCCGAATATTTATGCCAGTCT 57.025 40.909 0.00 0.00 0.00 3.24
662 804 5.304686 TCCCGAATATTTATGCCAGTCTT 57.695 39.130 0.00 0.00 0.00 3.01
679 825 5.239306 CCAGTCTTGTGTTAATTTCTCTGCA 59.761 40.000 0.00 0.00 0.00 4.41
699 845 1.034838 TGCCGTGCAGGTCAAAGTTT 61.035 50.000 5.57 0.00 43.70 2.66
701 847 1.308998 CCGTGCAGGTCAAAGTTTCT 58.691 50.000 5.57 0.00 34.51 2.52
706 852 3.319122 GTGCAGGTCAAAGTTTCTGGATT 59.681 43.478 0.00 0.00 30.82 3.01
738 892 6.511444 GCACATATTTCTTCATGAGAGACTGC 60.511 42.308 0.00 0.00 35.37 4.40
775 929 4.157817 CTGCAAGCAATTCGGCAC 57.842 55.556 0.00 0.00 35.83 5.01
776 930 1.286570 CTGCAAGCAATTCGGCACA 59.713 52.632 0.00 0.00 35.83 4.57
777 931 0.731514 CTGCAAGCAATTCGGCACAG 60.732 55.000 0.00 0.00 35.83 3.66
778 932 2.090524 GCAAGCAATTCGGCACAGC 61.091 57.895 0.00 0.00 35.83 4.40
779 933 1.444895 CAAGCAATTCGGCACAGCC 60.445 57.895 0.00 0.00 46.75 4.85
788 942 2.521708 GGCACAGCCCAGTTTGGT 60.522 61.111 0.00 0.00 44.06 3.67
789 943 2.564721 GGCACAGCCCAGTTTGGTC 61.565 63.158 0.00 0.00 44.06 4.02
790 944 2.908073 GCACAGCCCAGTTTGGTCG 61.908 63.158 0.00 0.00 35.17 4.79
794 948 2.594592 GCCCAGTTTGGTCGTGCT 60.595 61.111 0.00 0.00 35.17 4.40
798 952 0.307760 CCAGTTTGGTCGTGCTTGAC 59.692 55.000 0.86 0.86 38.17 3.18
824 978 3.420943 GCAACACAGCCACGACTT 58.579 55.556 0.00 0.00 0.00 3.01
826 980 0.592247 GCAACACAGCCACGACTTTG 60.592 55.000 0.00 0.00 0.00 2.77
827 981 0.732571 CAACACAGCCACGACTTTGT 59.267 50.000 0.00 0.00 32.03 2.83
835 989 1.878102 GCCACGACTTTGTCCTGTGAT 60.878 52.381 0.00 0.00 29.68 3.06
839 993 4.330074 CCACGACTTTGTCCTGTGATATTC 59.670 45.833 0.00 0.00 29.68 1.75
840 994 4.929211 CACGACTTTGTCCTGTGATATTCA 59.071 41.667 0.00 0.00 29.68 2.57
845 999 7.148423 CGACTTTGTCCTGTGATATTCATTTGA 60.148 37.037 0.00 0.00 0.00 2.69
887 1041 2.031516 CACGGAGACCAGCAGCAAG 61.032 63.158 0.00 0.00 0.00 4.01
888 1042 3.123620 CGGAGACCAGCAGCAAGC 61.124 66.667 0.00 0.00 46.19 4.01
908 1062 5.961396 AGCAATGCTGAATAATCATCTCC 57.039 39.130 7.07 0.00 37.57 3.71
909 1063 4.765856 AGCAATGCTGAATAATCATCTCCC 59.234 41.667 7.07 0.00 37.57 4.30
945 1102 7.013942 GGTTTTGTGTCACTTACCTTTCCTATT 59.986 37.037 4.27 0.00 0.00 1.73
950 1107 9.802039 TGTGTCACTTACCTTTCCTATTATTTT 57.198 29.630 4.27 0.00 0.00 1.82
999 1174 0.179189 GCGTGCTTATGTGACAAGCC 60.179 55.000 6.79 0.00 46.32 4.35
1000 1175 1.155889 CGTGCTTATGTGACAAGCCA 58.844 50.000 6.79 0.00 46.32 4.75
1057 1242 4.251268 GGCTTTCTACCTCGTGTATTTGT 58.749 43.478 0.00 0.00 0.00 2.83
1058 1243 4.694037 GGCTTTCTACCTCGTGTATTTGTT 59.306 41.667 0.00 0.00 0.00 2.83
1059 1244 5.180680 GGCTTTCTACCTCGTGTATTTGTTT 59.819 40.000 0.00 0.00 0.00 2.83
1060 1245 6.077838 GCTTTCTACCTCGTGTATTTGTTTG 58.922 40.000 0.00 0.00 0.00 2.93
1061 1246 6.293244 GCTTTCTACCTCGTGTATTTGTTTGT 60.293 38.462 0.00 0.00 0.00 2.83
1062 1247 6.533819 TTCTACCTCGTGTATTTGTTTGTG 57.466 37.500 0.00 0.00 0.00 3.33
1138 1332 4.517285 TGTGCAGAAAGAAGGCCTAATAG 58.483 43.478 5.16 0.00 0.00 1.73
1151 1345 3.947910 CCTAATAGGCATTTGGGCATG 57.052 47.619 0.00 0.00 46.44 4.06
1152 1346 3.499338 CCTAATAGGCATTTGGGCATGA 58.501 45.455 0.00 0.00 46.44 3.07
1154 1348 2.761786 ATAGGCATTTGGGCATGACT 57.238 45.000 0.00 0.00 45.23 3.41
1155 1349 2.057137 TAGGCATTTGGGCATGACTC 57.943 50.000 0.00 0.00 38.18 3.36
1156 1350 0.333993 AGGCATTTGGGCATGACTCT 59.666 50.000 0.00 0.00 38.18 3.24
1157 1351 1.188863 GGCATTTGGGCATGACTCTT 58.811 50.000 0.00 0.00 42.77 2.85
1158 1352 1.135721 GGCATTTGGGCATGACTCTTC 59.864 52.381 0.00 0.00 42.77 2.87
1159 1353 2.097825 GCATTTGGGCATGACTCTTCT 58.902 47.619 0.00 0.00 0.00 2.85
1160 1354 2.098770 GCATTTGGGCATGACTCTTCTC 59.901 50.000 0.00 0.00 0.00 2.87
1161 1355 2.496899 TTTGGGCATGACTCTTCTCC 57.503 50.000 0.00 0.00 0.00 3.71
1163 1357 1.274703 TGGGCATGACTCTTCTCCCC 61.275 60.000 0.00 0.00 32.88 4.81
1164 1358 1.144936 GGCATGACTCTTCTCCCCG 59.855 63.158 0.00 0.00 0.00 5.73
1165 1359 1.617947 GGCATGACTCTTCTCCCCGT 61.618 60.000 0.00 0.00 0.00 5.28
1166 1360 0.250513 GCATGACTCTTCTCCCCGTT 59.749 55.000 0.00 0.00 0.00 4.44
1167 1361 1.339151 GCATGACTCTTCTCCCCGTTT 60.339 52.381 0.00 0.00 0.00 3.60
1168 1362 2.876079 GCATGACTCTTCTCCCCGTTTT 60.876 50.000 0.00 0.00 0.00 2.43
1169 1363 2.543777 TGACTCTTCTCCCCGTTTTG 57.456 50.000 0.00 0.00 0.00 2.44
1170 1364 1.766496 TGACTCTTCTCCCCGTTTTGT 59.234 47.619 0.00 0.00 0.00 2.83
1171 1365 2.224209 TGACTCTTCTCCCCGTTTTGTC 60.224 50.000 0.00 0.00 0.00 3.18
1172 1366 1.071857 ACTCTTCTCCCCGTTTTGTCC 59.928 52.381 0.00 0.00 0.00 4.02
1173 1367 1.348036 CTCTTCTCCCCGTTTTGTCCT 59.652 52.381 0.00 0.00 0.00 3.85
1174 1368 1.346722 TCTTCTCCCCGTTTTGTCCTC 59.653 52.381 0.00 0.00 0.00 3.71
1175 1369 0.399075 TTCTCCCCGTTTTGTCCTCC 59.601 55.000 0.00 0.00 0.00 4.30
1176 1370 0.473117 TCTCCCCGTTTTGTCCTCCT 60.473 55.000 0.00 0.00 0.00 3.69
1177 1371 0.321653 CTCCCCGTTTTGTCCTCCTG 60.322 60.000 0.00 0.00 0.00 3.86
1178 1372 1.057851 TCCCCGTTTTGTCCTCCTGT 61.058 55.000 0.00 0.00 0.00 4.00
1179 1373 0.179001 CCCCGTTTTGTCCTCCTGTT 60.179 55.000 0.00 0.00 0.00 3.16
1180 1374 1.072648 CCCCGTTTTGTCCTCCTGTTA 59.927 52.381 0.00 0.00 0.00 2.41
1181 1375 2.290705 CCCCGTTTTGTCCTCCTGTTAT 60.291 50.000 0.00 0.00 0.00 1.89
1182 1376 3.418047 CCCGTTTTGTCCTCCTGTTATT 58.582 45.455 0.00 0.00 0.00 1.40
1183 1377 3.190535 CCCGTTTTGTCCTCCTGTTATTG 59.809 47.826 0.00 0.00 0.00 1.90
1184 1378 3.190535 CCGTTTTGTCCTCCTGTTATTGG 59.809 47.826 0.00 0.00 0.00 3.16
1185 1379 3.818773 CGTTTTGTCCTCCTGTTATTGGT 59.181 43.478 0.00 0.00 0.00 3.67
1186 1380 4.277423 CGTTTTGTCCTCCTGTTATTGGTT 59.723 41.667 0.00 0.00 0.00 3.67
1187 1381 5.221165 CGTTTTGTCCTCCTGTTATTGGTTT 60.221 40.000 0.00 0.00 0.00 3.27
1188 1382 6.016943 CGTTTTGTCCTCCTGTTATTGGTTTA 60.017 38.462 0.00 0.00 0.00 2.01
1189 1383 6.887626 TTTGTCCTCCTGTTATTGGTTTAC 57.112 37.500 0.00 0.00 0.00 2.01
1190 1384 4.913784 TGTCCTCCTGTTATTGGTTTACC 58.086 43.478 0.00 0.00 0.00 2.85
1191 1385 4.600111 TGTCCTCCTGTTATTGGTTTACCT 59.400 41.667 0.00 0.00 36.82 3.08
1192 1386 4.941873 GTCCTCCTGTTATTGGTTTACCTG 59.058 45.833 0.00 0.00 36.82 4.00
1193 1387 4.847512 TCCTCCTGTTATTGGTTTACCTGA 59.152 41.667 0.00 0.00 36.82 3.86
1194 1388 4.941873 CCTCCTGTTATTGGTTTACCTGAC 59.058 45.833 0.00 0.00 36.82 3.51
1195 1389 5.514136 CCTCCTGTTATTGGTTTACCTGACA 60.514 44.000 0.00 0.09 36.82 3.58
1196 1390 5.942961 TCCTGTTATTGGTTTACCTGACAA 58.057 37.500 0.00 0.00 36.82 3.18
1197 1391 5.766174 TCCTGTTATTGGTTTACCTGACAAC 59.234 40.000 0.00 1.08 36.82 3.32
1198 1392 5.533154 CCTGTTATTGGTTTACCTGACAACA 59.467 40.000 0.00 5.06 36.82 3.33
1199 1393 6.039941 CCTGTTATTGGTTTACCTGACAACAA 59.960 38.462 0.00 0.00 36.82 2.83
1200 1394 7.033530 TGTTATTGGTTTACCTGACAACAAG 57.966 36.000 0.00 0.00 36.82 3.16
1201 1395 4.584327 ATTGGTTTACCTGACAACAAGC 57.416 40.909 0.00 0.00 36.82 4.01
1202 1396 3.290948 TGGTTTACCTGACAACAAGCT 57.709 42.857 0.00 0.00 36.82 3.74
1203 1397 3.211045 TGGTTTACCTGACAACAAGCTC 58.789 45.455 0.00 0.00 36.82 4.09
1204 1398 2.552743 GGTTTACCTGACAACAAGCTCC 59.447 50.000 0.00 0.00 0.00 4.70
1205 1399 2.163818 TTACCTGACAACAAGCTCCG 57.836 50.000 0.00 0.00 0.00 4.63
1206 1400 1.045407 TACCTGACAACAAGCTCCGT 58.955 50.000 0.00 0.00 0.00 4.69
1207 1401 0.532862 ACCTGACAACAAGCTCCGTG 60.533 55.000 0.00 0.00 0.00 4.94
1208 1402 0.249868 CCTGACAACAAGCTCCGTGA 60.250 55.000 0.00 0.00 0.00 4.35
1209 1403 1.609061 CCTGACAACAAGCTCCGTGAT 60.609 52.381 0.00 0.00 0.00 3.06
1210 1404 2.353704 CCTGACAACAAGCTCCGTGATA 60.354 50.000 0.00 0.00 0.00 2.15
1211 1405 2.926200 CTGACAACAAGCTCCGTGATAG 59.074 50.000 0.00 0.00 0.00 2.08
1212 1406 2.299013 TGACAACAAGCTCCGTGATAGT 59.701 45.455 0.00 0.00 0.00 2.12
1213 1407 2.668457 GACAACAAGCTCCGTGATAGTG 59.332 50.000 0.00 0.00 0.00 2.74
1214 1408 2.002586 CAACAAGCTCCGTGATAGTGG 58.997 52.381 0.00 0.00 0.00 4.00
1215 1409 1.557099 ACAAGCTCCGTGATAGTGGA 58.443 50.000 0.00 0.00 0.00 4.02
1216 1410 1.204941 ACAAGCTCCGTGATAGTGGAC 59.795 52.381 0.00 0.00 0.00 4.02
1217 1411 1.204704 CAAGCTCCGTGATAGTGGACA 59.795 52.381 0.00 0.00 0.00 4.02
1218 1412 1.107114 AGCTCCGTGATAGTGGACAG 58.893 55.000 0.00 0.00 0.00 3.51
1219 1413 0.103208 GCTCCGTGATAGTGGACAGG 59.897 60.000 0.00 0.00 0.00 4.00
1220 1414 1.475403 CTCCGTGATAGTGGACAGGT 58.525 55.000 0.00 0.00 0.00 4.00
1221 1415 1.405821 CTCCGTGATAGTGGACAGGTC 59.594 57.143 0.00 0.00 0.00 3.85
1222 1416 1.005569 TCCGTGATAGTGGACAGGTCT 59.994 52.381 0.00 0.00 0.00 3.85
1223 1417 1.135139 CCGTGATAGTGGACAGGTCTG 59.865 57.143 0.00 0.00 0.00 3.51
1246 1440 0.674895 AAATCCACGCAGAGACCAGC 60.675 55.000 0.00 0.00 0.00 4.85
1329 1671 8.167392 ACAGCTATCTACAACTAGTGGATCTAT 58.833 37.037 3.64 0.00 44.13 1.98
1350 1692 2.530460 ATTATCTTGGGCAAGCCACA 57.470 45.000 13.87 5.82 38.28 4.17
1351 1693 1.544724 TTATCTTGGGCAAGCCACAC 58.455 50.000 13.87 0.00 38.28 3.82
1353 1695 0.251922 ATCTTGGGCAAGCCACACAT 60.252 50.000 13.87 1.37 38.28 3.21
1354 1696 1.180456 TCTTGGGCAAGCCACACATG 61.180 55.000 13.87 4.65 38.28 3.21
1356 1698 3.304721 GGGCAAGCCACACATGCA 61.305 61.111 13.87 0.00 41.80 3.96
1357 1699 2.260434 GGCAAGCCACACATGCAG 59.740 61.111 6.14 0.00 41.80 4.41
1358 1700 2.270257 GGCAAGCCACACATGCAGA 61.270 57.895 6.14 0.00 41.80 4.26
1360 1702 0.032403 GCAAGCCACACATGCAGAAA 59.968 50.000 0.00 0.00 39.81 2.52
1361 1703 1.538634 GCAAGCCACACATGCAGAAAA 60.539 47.619 0.00 0.00 39.81 2.29
1362 1704 2.129607 CAAGCCACACATGCAGAAAAC 58.870 47.619 0.00 0.00 0.00 2.43
1363 1705 1.401761 AGCCACACATGCAGAAAACA 58.598 45.000 0.00 0.00 0.00 2.83
1364 1706 1.965643 AGCCACACATGCAGAAAACAT 59.034 42.857 0.00 0.00 0.00 2.71
1384 1726 3.520187 CAGAATTGCAAACCCAGCC 57.480 52.632 1.71 0.00 0.00 4.85
1385 1727 0.680618 CAGAATTGCAAACCCAGCCA 59.319 50.000 1.71 0.00 0.00 4.75
1386 1728 1.070445 CAGAATTGCAAACCCAGCCAA 59.930 47.619 1.71 0.00 0.00 4.52
1387 1729 1.767681 AGAATTGCAAACCCAGCCAAA 59.232 42.857 1.71 0.00 0.00 3.28
1430 1772 6.043938 TCCAACCAATGTTCCTACTTTCTAGT 59.956 38.462 0.00 0.00 33.56 2.57
1431 1773 7.236019 TCCAACCAATGTTCCTACTTTCTAGTA 59.764 37.037 0.00 0.00 32.04 1.82
1432 1774 7.549488 CCAACCAATGTTCCTACTTTCTAGTAG 59.451 40.741 5.54 5.54 41.92 2.57
1433 1775 8.095169 CAACCAATGTTCCTACTTTCTAGTAGT 58.905 37.037 10.47 5.76 41.35 2.73
1449 1791 6.325352 TCTAGTAGTTTTTACCTCTTGGGGA 58.675 40.000 0.00 0.00 40.03 4.81
1451 1793 6.464530 AGTAGTTTTTACCTCTTGGGGAAT 57.535 37.500 0.00 0.00 37.83 3.01
1470 1812 5.221048 GGGAATACAATCCAAACCATCTTCG 60.221 44.000 0.00 0.00 41.55 3.79
1496 1838 1.368374 CTACCCCCTTCCTTTGGTCA 58.632 55.000 0.00 0.00 32.27 4.02
1550 1893 5.687166 ATACGTCCCAGTTTTTATCCTCA 57.313 39.130 0.00 0.00 0.00 3.86
1583 1926 2.893637 GCTTCTGCAACTCCGAAGATA 58.106 47.619 14.84 0.00 37.03 1.98
1693 2038 7.744087 AAACTCAAGTGCAAACTCATACATA 57.256 32.000 0.00 0.00 0.00 2.29
1738 2083 0.669318 AGCGAACATACGTGTGGGTG 60.669 55.000 17.05 6.43 38.92 4.61
1760 2106 2.748058 AAACCGCGACAGCCCAATCT 62.748 55.000 8.23 0.00 41.18 2.40
1787 2133 4.338400 GCAGTTCCTCTGGTAAGTTTGTTT 59.662 41.667 0.00 0.00 43.78 2.83
1795 2141 6.350612 CCTCTGGTAAGTTTGTTTTGACCAAA 60.351 38.462 0.00 0.00 36.56 3.28
1849 2195 1.064758 AGCACTCTTTGGACAACCACA 60.065 47.619 0.00 0.00 46.80 4.17
1855 2201 4.282195 ACTCTTTGGACAACCACAAACAAA 59.718 37.500 0.00 0.00 46.80 2.83
1878 2227 3.121030 CACTGAAGCCGCCGGAAG 61.121 66.667 7.68 0.00 0.00 3.46
1948 2297 2.974794 TGGCACTGATATATGGCAGAGT 59.025 45.455 12.05 0.00 45.49 3.24
1996 2345 3.133362 TCCCGAATATGAGTTTACCGCTT 59.867 43.478 0.00 0.00 0.00 4.68
1997 2346 3.247648 CCCGAATATGAGTTTACCGCTTG 59.752 47.826 0.00 0.00 0.00 4.01
2039 2391 4.742649 TCGTCGCCTGGAGAGCCT 62.743 66.667 0.00 0.00 34.31 4.58
2040 2392 3.764466 CGTCGCCTGGAGAGCCTT 61.764 66.667 0.00 0.00 34.31 4.35
2068 2420 9.993598 GATGACCCATCTACGAGTGACTACTCT 62.994 48.148 5.96 0.00 42.47 3.24
2160 2524 1.139058 AGATGGTGTATTGGTCTCCGC 59.861 52.381 0.00 0.00 0.00 5.54
2161 2525 0.180406 ATGGTGTATTGGTCTCCGCC 59.820 55.000 0.00 0.00 0.00 6.13
2162 2526 1.195442 TGGTGTATTGGTCTCCGCCA 61.195 55.000 0.00 0.00 35.24 5.69
2163 2527 0.180406 GGTGTATTGGTCTCCGCCAT 59.820 55.000 0.00 0.00 38.48 4.40
2180 2544 3.418995 GCCATGCATGTATCAGAGGAAT 58.581 45.455 24.58 0.00 0.00 3.01
2198 2562 3.382546 GGAATTCAGGTCCCATCATGTTG 59.617 47.826 7.93 0.00 0.00 3.33
2234 2598 0.903236 GAGGGGGCGAGTTCTACTTT 59.097 55.000 0.00 0.00 0.00 2.66
2258 2622 1.154131 CACTGTCTCTGACGGCTCG 60.154 63.158 6.46 0.00 42.17 5.03
2264 2628 3.997064 CTCTGACGGCTCGCCAAGG 62.997 68.421 8.87 0.00 35.37 3.61
2266 2630 4.373116 TGACGGCTCGCCAAGGAC 62.373 66.667 8.87 0.00 35.37 3.85
2276 2640 3.017323 CCAAGGACGCGCATGATC 58.983 61.111 5.73 0.00 0.00 2.92
2291 2655 0.902984 TGATCCTGCACTACACGGGT 60.903 55.000 0.00 0.00 34.93 5.28
2297 2661 1.752498 CTGCACTACACGGGTATGGTA 59.248 52.381 0.00 0.00 0.00 3.25
2385 2749 0.321034 TGATCGCTATGCCTCATGCC 60.321 55.000 0.00 0.00 40.16 4.40
2396 2760 4.652131 TCATGCCGCCCGTTTGGT 62.652 61.111 0.00 0.00 36.04 3.67
2455 2819 2.613977 GCCTCGATGGATATGAACCTGG 60.614 54.545 5.24 0.00 38.35 4.45
2519 2883 3.209410 GCATTGTGGTCAAGGAGATAGG 58.791 50.000 0.00 0.00 37.51 2.57
2655 3019 3.069079 ACGCTAACCTGAGTAGTCTCA 57.931 47.619 0.00 0.00 46.85 3.27
2731 3104 1.078759 GAGAAGCGTGGTGATGGTCG 61.079 60.000 0.00 0.00 0.00 4.79
2811 3189 9.710900 CCATCTTATTGCTTATACTGTGTGATA 57.289 33.333 0.00 0.00 0.00 2.15
2826 3211 7.796054 ACTGTGTGATAGATTGCCTATTAACT 58.204 34.615 0.00 0.00 38.17 2.24
2866 3264 9.639601 GGCTAATAAAATCATACCAATAAAGCC 57.360 33.333 0.00 0.00 35.91 4.35
2867 3265 9.639601 GCTAATAAAATCATACCAATAAAGCCC 57.360 33.333 0.00 0.00 0.00 5.19
2922 3336 9.567776 TTATGTTCAGTTGAAACATTCTTCCTA 57.432 29.630 6.78 0.00 35.58 2.94
2925 3339 9.567776 TGTTCAGTTGAAACATTCTTCCTAATA 57.432 29.630 0.00 0.00 35.58 0.98
2957 3380 4.800993 CCACTAAGACACATGACGAGATTC 59.199 45.833 0.00 0.00 0.00 2.52
2981 3407 5.526479 CACTGTTGGATGATCATAGGACTTG 59.474 44.000 8.54 7.30 0.00 3.16
2988 3416 6.042093 TGGATGATCATAGGACTTGGACTAAC 59.958 42.308 8.54 0.00 0.00 2.34
3001 3429 8.451748 GGACTTGGACTAACATATTTTGTTCTC 58.548 37.037 0.00 0.00 45.55 2.87
3002 3430 8.918202 ACTTGGACTAACATATTTTGTTCTCA 57.082 30.769 0.00 0.00 45.55 3.27
3006 3434 8.729756 TGGACTAACATATTTTGTTCTCACATG 58.270 33.333 0.00 0.00 45.55 3.21
3035 3488 0.811915 ACTACTACCAGCTGTGCTCG 59.188 55.000 13.81 0.00 36.40 5.03
3102 3555 6.528321 TCTCTATAATCCTGTCATTTGGCAG 58.472 40.000 5.18 5.18 46.72 4.85
3103 3556 6.100279 TCTCTATAATCCTGTCATTTGGCAGT 59.900 38.462 10.97 0.00 45.78 4.40
3107 3560 2.783135 TCCTGTCATTTGGCAGTCTTC 58.217 47.619 10.97 0.00 45.78 2.87
3108 3561 2.106338 TCCTGTCATTTGGCAGTCTTCA 59.894 45.455 10.97 0.00 45.78 3.02
3110 3563 3.128242 CCTGTCATTTGGCAGTCTTCATC 59.872 47.826 10.97 0.00 45.78 2.92
3151 3993 5.453762 CCATTTTCTTTCTCTTTTGCACCCT 60.454 40.000 0.00 0.00 0.00 4.34
3154 3996 3.897239 TCTTTCTCTTTTGCACCCTTCA 58.103 40.909 0.00 0.00 0.00 3.02
3284 4179 0.392193 CGCTGAAGATTGCACTCCCT 60.392 55.000 0.00 0.00 0.00 4.20
3315 4210 4.098055 AGTCTACTGATACTTGTGTGCG 57.902 45.455 0.00 0.00 0.00 5.34
3382 4277 6.754193 TCGATTATGTATCCAAGTGCATGTA 58.246 36.000 0.00 0.00 0.00 2.29
3468 4370 3.055240 GGGACCCATGAATTTTGCAATGA 60.055 43.478 5.33 0.00 0.00 2.57
3485 4387 5.048782 TGCAATGATAGAACAACTGGACAAC 60.049 40.000 0.00 0.00 0.00 3.32
3516 4419 9.613428 ATGGACTATACGATGAGAATTCAAAAA 57.387 29.630 8.44 0.00 36.78 1.94
3539 4442 6.600882 ATTTTGTGGATCAGCTTCAAAGAT 57.399 33.333 0.00 0.00 31.36 2.40
3600 4503 3.130160 GCAGAGGAGGCTTTGGCG 61.130 66.667 0.00 0.00 39.81 5.69
3857 4767 3.883830 TGGAGCTGAGAAGCTTCTTAG 57.116 47.619 33.14 33.14 46.36 2.18
4674 5601 2.843077 CATCAAGTGTCGTTGTGCATC 58.157 47.619 0.00 0.00 0.00 3.91
6007 6952 4.651778 AGCATTGTGGCTAGTCTTGTTTA 58.348 39.130 0.00 0.00 43.70 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.690786 TGATTATTATACGGGCCGTGC 58.309 47.619 39.80 18.18 41.39 5.34
15 16 3.063452 GCATGATTATTATACGGGCCGTG 59.937 47.826 39.80 19.97 41.39 4.94
16 17 3.267483 GCATGATTATTATACGGGCCGT 58.733 45.455 35.91 35.91 44.35 5.68
17 18 2.612212 GGCATGATTATTATACGGGCCG 59.388 50.000 27.06 27.06 0.00 6.13
18 19 3.877508 GAGGCATGATTATTATACGGGCC 59.122 47.826 0.00 0.00 39.14 5.80
19 20 3.555956 CGAGGCATGATTATTATACGGGC 59.444 47.826 0.00 0.00 0.00 6.13
20 21 4.119862 CCGAGGCATGATTATTATACGGG 58.880 47.826 0.00 0.00 34.27 5.28
21 22 3.555956 GCCGAGGCATGATTATTATACGG 59.444 47.826 9.58 0.00 41.49 4.02
22 23 3.242944 CGCCGAGGCATGATTATTATACG 59.757 47.826 15.03 0.00 42.06 3.06
23 24 3.555956 CCGCCGAGGCATGATTATTATAC 59.444 47.826 15.03 0.00 42.06 1.47
24 25 3.431626 CCCGCCGAGGCATGATTATTATA 60.432 47.826 15.03 0.00 42.06 0.98
25 26 2.632377 CCGCCGAGGCATGATTATTAT 58.368 47.619 15.03 0.00 42.06 1.28
26 27 1.338674 CCCGCCGAGGCATGATTATTA 60.339 52.381 15.03 0.00 42.06 0.98
27 28 0.606401 CCCGCCGAGGCATGATTATT 60.606 55.000 15.03 0.00 42.06 1.40
28 29 1.003355 CCCGCCGAGGCATGATTAT 60.003 57.895 15.03 0.00 42.06 1.28
29 30 2.425592 CCCGCCGAGGCATGATTA 59.574 61.111 15.03 0.00 42.06 1.75
52 53 1.077787 TTAATCGTGCCTGGCCTGG 60.078 57.895 23.89 23.89 0.00 4.45
53 54 0.107703 TCTTAATCGTGCCTGGCCTG 60.108 55.000 17.53 8.65 0.00 4.85
54 55 0.839946 ATCTTAATCGTGCCTGGCCT 59.160 50.000 17.53 0.00 0.00 5.19
55 56 0.947244 CATCTTAATCGTGCCTGGCC 59.053 55.000 17.53 6.66 0.00 5.36
56 57 0.947244 CCATCTTAATCGTGCCTGGC 59.053 55.000 12.87 12.87 0.00 4.85
57 58 1.597742 CCCATCTTAATCGTGCCTGG 58.402 55.000 0.00 0.00 0.00 4.45
58 59 0.947244 GCCCATCTTAATCGTGCCTG 59.053 55.000 0.00 0.00 0.00 4.85
59 60 0.179018 GGCCCATCTTAATCGTGCCT 60.179 55.000 0.00 0.00 34.61 4.75
60 61 1.507141 CGGCCCATCTTAATCGTGCC 61.507 60.000 0.00 0.00 0.00 5.01
61 62 0.814010 ACGGCCCATCTTAATCGTGC 60.814 55.000 0.00 0.00 0.00 5.34
62 63 0.937304 CACGGCCCATCTTAATCGTG 59.063 55.000 0.00 0.00 41.09 4.35
63 64 0.814010 GCACGGCCCATCTTAATCGT 60.814 55.000 0.00 0.00 0.00 3.73
64 65 1.507141 GGCACGGCCCATCTTAATCG 61.507 60.000 0.00 0.00 44.06 3.34
65 66 2.331265 GGCACGGCCCATCTTAATC 58.669 57.895 0.00 0.00 44.06 1.75
66 67 4.579127 GGCACGGCCCATCTTAAT 57.421 55.556 0.00 0.00 44.06 1.40
101 102 0.550914 TGTATAGCTGGCCAAAGGGG 59.449 55.000 7.01 0.00 40.85 4.79
102 103 2.107204 AGATGTATAGCTGGCCAAAGGG 59.893 50.000 7.01 0.00 37.18 3.95
103 104 3.498774 AGATGTATAGCTGGCCAAAGG 57.501 47.619 7.01 0.00 0.00 3.11
104 105 4.641989 ACAAAGATGTATAGCTGGCCAAAG 59.358 41.667 7.01 0.00 38.24 2.77
105 106 4.398988 CACAAAGATGTATAGCTGGCCAAA 59.601 41.667 7.01 0.00 37.82 3.28
106 107 3.947196 CACAAAGATGTATAGCTGGCCAA 59.053 43.478 7.01 0.00 37.82 4.52
107 108 3.199727 TCACAAAGATGTATAGCTGGCCA 59.800 43.478 4.71 4.71 37.82 5.36
108 109 3.808728 TCACAAAGATGTATAGCTGGCC 58.191 45.455 0.00 0.00 37.82 5.36
109 110 3.249559 GCTCACAAAGATGTATAGCTGGC 59.750 47.826 0.00 0.00 41.28 4.85
110 111 4.445453 TGCTCACAAAGATGTATAGCTGG 58.555 43.478 0.00 0.00 43.25 4.85
111 112 6.615264 AATGCTCACAAAGATGTATAGCTG 57.385 37.500 0.00 0.00 43.25 4.24
112 113 7.636150 AAAATGCTCACAAAGATGTATAGCT 57.364 32.000 13.34 0.00 43.25 3.32
134 135 7.856145 AAAATGGCTAACACACATTCAAAAA 57.144 28.000 0.00 0.00 34.00 1.94
135 136 7.550551 TGAAAAATGGCTAACACACATTCAAAA 59.449 29.630 0.00 0.00 34.00 2.44
136 137 7.044181 TGAAAAATGGCTAACACACATTCAAA 58.956 30.769 0.00 0.00 34.00 2.69
137 138 6.577103 TGAAAAATGGCTAACACACATTCAA 58.423 32.000 0.00 0.00 34.00 2.69
138 139 6.154203 TGAAAAATGGCTAACACACATTCA 57.846 33.333 0.00 0.00 34.00 2.57
139 140 7.475771 TTTGAAAAATGGCTAACACACATTC 57.524 32.000 0.00 0.00 34.00 2.67
140 141 9.553064 TTATTTGAAAAATGGCTAACACACATT 57.447 25.926 0.00 0.00 36.46 2.71
141 142 9.553064 TTTATTTGAAAAATGGCTAACACACAT 57.447 25.926 0.00 0.00 0.00 3.21
142 143 8.948631 TTTATTTGAAAAATGGCTAACACACA 57.051 26.923 0.00 0.00 0.00 3.72
143 144 9.810231 CATTTATTTGAAAAATGGCTAACACAC 57.190 29.630 0.00 0.00 39.55 3.82
144 145 9.553064 ACATTTATTTGAAAAATGGCTAACACA 57.447 25.926 11.86 0.00 44.80 3.72
199 200 7.976734 TGTTTCAGAAAATATGTCCGTGTTTTT 59.023 29.630 0.00 0.00 0.00 1.94
200 201 7.434013 GTGTTTCAGAAAATATGTCCGTGTTTT 59.566 33.333 0.00 0.00 0.00 2.43
201 202 6.915843 GTGTTTCAGAAAATATGTCCGTGTTT 59.084 34.615 0.00 0.00 0.00 2.83
202 203 6.262273 AGTGTTTCAGAAAATATGTCCGTGTT 59.738 34.615 0.00 0.00 0.00 3.32
203 204 5.763204 AGTGTTTCAGAAAATATGTCCGTGT 59.237 36.000 0.00 0.00 0.00 4.49
204 205 6.241207 AGTGTTTCAGAAAATATGTCCGTG 57.759 37.500 0.00 0.00 0.00 4.94
205 206 7.383687 TCTAGTGTTTCAGAAAATATGTCCGT 58.616 34.615 0.00 0.00 0.00 4.69
206 207 7.827819 TCTAGTGTTTCAGAAAATATGTCCG 57.172 36.000 0.00 0.00 0.00 4.79
237 238 9.161684 GTTCAAAAGAAATGTACGTCGTATTTT 57.838 29.630 8.59 11.38 0.00 1.82
238 239 8.553696 AGTTCAAAAGAAATGTACGTCGTATTT 58.446 29.630 8.59 7.08 0.00 1.40
239 240 8.080083 AGTTCAAAAGAAATGTACGTCGTATT 57.920 30.769 8.59 0.00 0.00 1.89
240 241 7.647907 AGTTCAAAAGAAATGTACGTCGTAT 57.352 32.000 8.59 0.00 0.00 3.06
241 242 7.647318 TGTAGTTCAAAAGAAATGTACGTCGTA 59.353 33.333 0.00 0.00 0.00 3.43
242 243 5.978934 AGTTCAAAAGAAATGTACGTCGT 57.021 34.783 2.21 2.21 0.00 4.34
243 244 6.784227 GTGTAGTTCAAAAGAAATGTACGTCG 59.216 38.462 0.00 0.00 0.00 5.12
244 245 7.623770 TGTGTAGTTCAAAAGAAATGTACGTC 58.376 34.615 0.00 0.00 0.00 4.34
245 246 7.542534 TGTGTAGTTCAAAAGAAATGTACGT 57.457 32.000 0.00 0.00 0.00 3.57
246 247 8.730427 GTTTGTGTAGTTCAAAAGAAATGTACG 58.270 33.333 0.00 0.00 36.71 3.67
247 248 9.562583 TGTTTGTGTAGTTCAAAAGAAATGTAC 57.437 29.630 0.00 0.00 36.71 2.90
249 250 9.651913 AATGTTTGTGTAGTTCAAAAGAAATGT 57.348 25.926 0.00 0.00 36.71 2.71
311 312 9.705290 AAGAATGTTCGCCAACTTTTAAAATAT 57.295 25.926 0.09 0.00 31.66 1.28
312 313 9.535878 AAAGAATGTTCGCCAACTTTTAAAATA 57.464 25.926 0.09 0.00 33.23 1.40
313 314 8.432110 AAAGAATGTTCGCCAACTTTTAAAAT 57.568 26.923 0.09 0.00 33.23 1.82
314 315 7.835634 AAAGAATGTTCGCCAACTTTTAAAA 57.164 28.000 0.00 0.00 33.23 1.52
315 316 7.835634 AAAAGAATGTTCGCCAACTTTTAAA 57.164 28.000 0.00 0.00 36.89 1.52
316 317 8.809478 GTTAAAAGAATGTTCGCCAACTTTTAA 58.191 29.630 21.23 21.23 36.89 1.52
317 318 7.974501 TGTTAAAAGAATGTTCGCCAACTTTTA 59.025 29.630 16.34 16.34 36.89 1.52
318 319 6.814146 TGTTAAAAGAATGTTCGCCAACTTTT 59.186 30.769 17.47 17.47 36.89 2.27
319 320 6.254804 GTGTTAAAAGAATGTTCGCCAACTTT 59.745 34.615 0.00 0.00 36.22 2.66
320 321 5.746721 GTGTTAAAAGAATGTTCGCCAACTT 59.253 36.000 0.00 0.00 33.17 2.66
321 322 5.067283 AGTGTTAAAAGAATGTTCGCCAACT 59.933 36.000 0.00 0.00 33.17 3.16
322 323 5.173131 CAGTGTTAAAAGAATGTTCGCCAAC 59.827 40.000 0.00 0.00 0.00 3.77
323 324 5.277825 CAGTGTTAAAAGAATGTTCGCCAA 58.722 37.500 0.00 0.00 0.00 4.52
324 325 4.791411 GCAGTGTTAAAAGAATGTTCGCCA 60.791 41.667 0.00 0.00 0.00 5.69
325 326 3.668656 GCAGTGTTAAAAGAATGTTCGCC 59.331 43.478 0.00 0.00 0.00 5.54
326 327 4.286910 TGCAGTGTTAAAAGAATGTTCGC 58.713 39.130 0.00 0.00 0.00 4.70
327 328 8.417176 GTTTATGCAGTGTTAAAAGAATGTTCG 58.583 33.333 0.00 0.00 0.00 3.95
328 329 9.243637 TGTTTATGCAGTGTTAAAAGAATGTTC 57.756 29.630 0.00 0.00 0.00 3.18
329 330 9.593134 TTGTTTATGCAGTGTTAAAAGAATGTT 57.407 25.926 0.00 0.00 0.00 2.71
330 331 9.762933 ATTGTTTATGCAGTGTTAAAAGAATGT 57.237 25.926 0.00 0.00 0.00 2.71
359 360 9.869844 CAAAAACATGTTTGTGACAGTTTAAAA 57.130 25.926 30.01 0.00 42.62 1.52
360 361 8.499162 CCAAAAACATGTTTGTGACAGTTTAAA 58.501 29.630 33.66 0.00 42.62 1.52
361 362 7.872993 TCCAAAAACATGTTTGTGACAGTTTAA 59.127 29.630 33.66 12.02 42.62 1.52
362 363 7.378966 TCCAAAAACATGTTTGTGACAGTTTA 58.621 30.769 33.66 13.11 42.62 2.01
363 364 6.226787 TCCAAAAACATGTTTGTGACAGTTT 58.773 32.000 33.66 16.36 42.62 2.66
364 365 5.788450 TCCAAAAACATGTTTGTGACAGTT 58.212 33.333 33.66 17.00 42.62 3.16
365 366 5.398603 TCCAAAAACATGTTTGTGACAGT 57.601 34.783 33.66 12.39 42.62 3.55
366 367 6.533185 GTTTCCAAAAACATGTTTGTGACAG 58.467 36.000 33.66 21.12 43.52 3.51
367 368 6.473397 GTTTCCAAAAACATGTTTGTGACA 57.527 33.333 33.66 20.86 43.52 3.58
379 380 5.771602 AATGTTCACGTGTTTCCAAAAAC 57.228 34.783 16.51 10.24 44.18 2.43
380 381 6.787085 AAAATGTTCACGTGTTTCCAAAAA 57.213 29.167 16.51 0.00 0.00 1.94
381 382 6.787085 AAAAATGTTCACGTGTTTCCAAAA 57.213 29.167 16.51 0.00 0.00 2.44
382 383 7.884816 TTAAAAATGTTCACGTGTTTCCAAA 57.115 28.000 16.51 0.00 0.00 3.28
383 384 7.884816 TTTAAAAATGTTCACGTGTTTCCAA 57.115 28.000 16.51 0.00 0.00 3.53
384 385 7.884816 TTTTAAAAATGTTCACGTGTTTCCA 57.115 28.000 16.51 8.40 0.00 3.53
385 386 8.436970 ACTTTTTAAAAATGTTCACGTGTTTCC 58.563 29.630 16.51 2.67 0.00 3.13
386 387 9.800299 AACTTTTTAAAAATGTTCACGTGTTTC 57.200 25.926 16.51 7.83 0.00 2.78
387 388 9.587461 CAACTTTTTAAAAATGTTCACGTGTTT 57.413 25.926 16.51 9.92 0.00 2.83
388 389 7.742525 GCAACTTTTTAAAAATGTTCACGTGTT 59.257 29.630 16.51 8.20 0.00 3.32
389 390 7.230914 GCAACTTTTTAAAAATGTTCACGTGT 58.769 30.769 16.51 2.76 0.00 4.49
390 391 6.403777 CGCAACTTTTTAAAAATGTTCACGTG 59.596 34.615 13.55 9.94 0.00 4.49
391 392 6.454450 CCGCAACTTTTTAAAAATGTTCACGT 60.454 34.615 23.86 14.32 0.00 4.49
392 393 5.893726 CCGCAACTTTTTAAAAATGTTCACG 59.106 36.000 13.55 19.28 0.00 4.35
393 394 6.994992 TCCGCAACTTTTTAAAAATGTTCAC 58.005 32.000 13.55 11.90 0.00 3.18
394 395 7.596749 TTCCGCAACTTTTTAAAAATGTTCA 57.403 28.000 13.55 3.12 0.00 3.18
395 396 8.384365 TCTTTCCGCAACTTTTTAAAAATGTTC 58.616 29.630 13.55 11.65 0.00 3.18
396 397 8.257830 TCTTTCCGCAACTTTTTAAAAATGTT 57.742 26.923 13.55 15.21 0.00 2.71
397 398 7.835634 TCTTTCCGCAACTTTTTAAAAATGT 57.164 28.000 13.55 10.81 0.00 2.71
398 399 9.715123 AATTCTTTCCGCAACTTTTTAAAAATG 57.285 25.926 13.55 11.05 0.00 2.32
405 406 8.722394 TGTTAAAAATTCTTTCCGCAACTTTTT 58.278 25.926 0.00 0.00 0.00 1.94
406 407 8.257830 TGTTAAAAATTCTTTCCGCAACTTTT 57.742 26.923 0.00 0.00 0.00 2.27
407 408 7.547722 ACTGTTAAAAATTCTTTCCGCAACTTT 59.452 29.630 0.00 0.00 0.00 2.66
408 409 7.010091 CACTGTTAAAAATTCTTTCCGCAACTT 59.990 33.333 0.00 0.00 0.00 2.66
409 410 6.475402 CACTGTTAAAAATTCTTTCCGCAACT 59.525 34.615 0.00 0.00 0.00 3.16
410 411 6.636443 CACTGTTAAAAATTCTTTCCGCAAC 58.364 36.000 0.00 0.00 0.00 4.17
411 412 5.233263 GCACTGTTAAAAATTCTTTCCGCAA 59.767 36.000 0.00 0.00 0.00 4.85
412 413 4.742659 GCACTGTTAAAAATTCTTTCCGCA 59.257 37.500 0.00 0.00 0.00 5.69
413 414 4.149922 GGCACTGTTAAAAATTCTTTCCGC 59.850 41.667 0.00 0.00 0.00 5.54
414 415 5.528870 AGGCACTGTTAAAAATTCTTTCCG 58.471 37.500 0.00 0.00 37.18 4.30
415 416 7.882179 TCTAGGCACTGTTAAAAATTCTTTCC 58.118 34.615 0.00 0.00 41.52 3.13
416 417 9.744468 TTTCTAGGCACTGTTAAAAATTCTTTC 57.256 29.630 0.00 0.00 41.52 2.62
514 515 3.377172 CGGGTCGCATCCTTTAGATTTTT 59.623 43.478 0.00 0.00 30.59 1.94
515 516 2.943033 CGGGTCGCATCCTTTAGATTTT 59.057 45.455 0.00 0.00 30.59 1.82
516 517 2.561569 CGGGTCGCATCCTTTAGATTT 58.438 47.619 0.00 0.00 30.59 2.17
517 518 1.202651 CCGGGTCGCATCCTTTAGATT 60.203 52.381 0.00 0.00 30.59 2.40
518 519 0.393077 CCGGGTCGCATCCTTTAGAT 59.607 55.000 0.00 0.00 34.66 1.98
519 520 1.820581 CCGGGTCGCATCCTTTAGA 59.179 57.895 0.00 0.00 0.00 2.10
520 521 1.887707 GCCGGGTCGCATCCTTTAG 60.888 63.158 2.18 0.00 0.00 1.85
521 522 2.188469 GCCGGGTCGCATCCTTTA 59.812 61.111 2.18 0.00 0.00 1.85
522 523 4.796495 GGCCGGGTCGCATCCTTT 62.796 66.667 2.18 0.00 0.00 3.11
643 785 6.363577 ACACAAGACTGGCATAAATATTCG 57.636 37.500 0.00 0.00 0.00 3.34
655 797 5.239306 TGCAGAGAAATTAACACAAGACTGG 59.761 40.000 0.00 0.00 0.00 4.00
661 803 4.615682 CGGCATGCAGAGAAATTAACACAA 60.616 41.667 21.36 0.00 0.00 3.33
662 804 3.119884 CGGCATGCAGAGAAATTAACACA 60.120 43.478 21.36 0.00 0.00 3.72
679 825 0.823356 AACTTTGACCTGCACGGCAT 60.823 50.000 0.00 0.00 38.13 4.40
699 845 0.032912 ATGTGCCATGCCAATCCAGA 60.033 50.000 0.00 0.00 0.00 3.86
701 847 2.385135 ATATGTGCCATGCCAATCCA 57.615 45.000 0.00 0.00 0.00 3.41
706 852 3.363627 TGAAGAAATATGTGCCATGCCA 58.636 40.909 0.00 0.00 0.00 4.92
731 885 2.087009 CGGAAACCGTCGCAGTCTC 61.087 63.158 1.80 0.00 42.73 3.36
771 925 2.564721 GACCAAACTGGGCTGTGCC 61.565 63.158 0.00 0.00 44.12 5.01
772 926 2.908073 CGACCAAACTGGGCTGTGC 61.908 63.158 0.00 0.00 45.79 4.57
773 927 1.525995 ACGACCAAACTGGGCTGTG 60.526 57.895 0.00 0.00 45.79 3.66
774 928 1.525995 CACGACCAAACTGGGCTGT 60.526 57.895 0.00 0.00 45.79 4.40
775 929 2.908073 GCACGACCAAACTGGGCTG 61.908 63.158 0.00 0.00 45.79 4.85
776 930 2.594592 GCACGACCAAACTGGGCT 60.595 61.111 0.00 0.00 45.79 5.19
777 931 2.193536 AAGCACGACCAAACTGGGC 61.194 57.895 0.00 0.00 44.03 5.36
778 932 0.817634 TCAAGCACGACCAAACTGGG 60.818 55.000 0.00 0.00 43.37 4.45
779 933 0.307760 GTCAAGCACGACCAAACTGG 59.692 55.000 0.00 0.00 45.02 4.00
780 934 3.825812 GTCAAGCACGACCAAACTG 57.174 52.632 0.00 0.00 0.00 3.16
794 948 0.310543 GTGTTGCCTGATTGCGTCAA 59.689 50.000 0.00 0.00 36.14 3.18
798 952 1.443194 GCTGTGTTGCCTGATTGCG 60.443 57.895 0.00 0.00 0.00 4.85
819 973 6.668541 AATGAATATCACAGGACAAAGTCG 57.331 37.500 0.00 0.00 32.65 4.18
824 978 6.244654 TGGTCAAATGAATATCACAGGACAA 58.755 36.000 0.00 0.00 29.70 3.18
826 980 6.949352 ATGGTCAAATGAATATCACAGGAC 57.051 37.500 0.00 0.00 0.00 3.85
827 981 7.835682 AGAAATGGTCAAATGAATATCACAGGA 59.164 33.333 0.00 0.00 0.00 3.86
857 1011 2.017049 GTCTCCGTGGGGAATTGAATG 58.983 52.381 0.00 0.00 43.27 2.67
858 1012 1.064685 GGTCTCCGTGGGGAATTGAAT 60.065 52.381 0.00 0.00 43.27 2.57
887 1041 4.521639 TGGGAGATGATTATTCAGCATTGC 59.478 41.667 0.00 0.00 40.79 3.56
888 1042 5.533528 TGTGGGAGATGATTATTCAGCATTG 59.466 40.000 5.74 0.00 40.79 2.82
889 1043 5.533903 GTGTGGGAGATGATTATTCAGCATT 59.466 40.000 5.74 0.00 40.79 3.56
890 1044 5.068636 GTGTGGGAGATGATTATTCAGCAT 58.931 41.667 5.74 0.00 40.79 3.79
945 1102 3.118702 TCCAGTTCGCCGGACATAAAATA 60.119 43.478 5.05 0.00 0.00 1.40
950 1107 1.694844 TATCCAGTTCGCCGGACATA 58.305 50.000 5.05 0.00 33.05 2.29
999 1174 5.964958 AGTTTTGGTATTCCTGATGTGTG 57.035 39.130 0.00 0.00 34.23 3.82
1000 1175 5.243730 CCAAGTTTTGGTATTCCTGATGTGT 59.756 40.000 0.00 0.00 45.93 3.72
1057 1242 0.463620 GTTTGCTTGGAGGGCACAAA 59.536 50.000 0.00 0.00 39.55 2.83
1058 1243 0.685785 TGTTTGCTTGGAGGGCACAA 60.686 50.000 0.00 0.00 39.55 3.33
1059 1244 1.076412 TGTTTGCTTGGAGGGCACA 60.076 52.632 0.00 0.00 39.55 4.57
1060 1245 1.109323 AGTGTTTGCTTGGAGGGCAC 61.109 55.000 0.00 0.00 39.55 5.01
1061 1246 0.823356 GAGTGTTTGCTTGGAGGGCA 60.823 55.000 0.00 0.00 37.97 5.36
1062 1247 1.527433 GGAGTGTTTGCTTGGAGGGC 61.527 60.000 0.00 0.00 0.00 5.19
1117 1311 3.879892 CCTATTAGGCCTTCTTTCTGCAC 59.120 47.826 12.58 0.00 0.00 4.57
1138 1332 1.135721 GAAGAGTCATGCCCAAATGCC 59.864 52.381 0.00 0.00 0.00 4.40
1140 1334 2.686915 GGAGAAGAGTCATGCCCAAATG 59.313 50.000 0.00 0.00 0.00 2.32
1144 1338 1.274703 GGGGAGAAGAGTCATGCCCA 61.275 60.000 12.79 0.00 43.69 5.36
1146 1340 1.144936 CGGGGAGAAGAGTCATGCC 59.855 63.158 0.00 0.00 0.00 4.40
1147 1341 0.250513 AACGGGGAGAAGAGTCATGC 59.749 55.000 0.00 0.00 0.00 4.06
1149 1343 2.372172 ACAAAACGGGGAGAAGAGTCAT 59.628 45.455 0.00 0.00 0.00 3.06
1150 1344 1.766496 ACAAAACGGGGAGAAGAGTCA 59.234 47.619 0.00 0.00 0.00 3.41
1151 1345 2.414806 GACAAAACGGGGAGAAGAGTC 58.585 52.381 0.00 0.00 0.00 3.36
1152 1346 1.071857 GGACAAAACGGGGAGAAGAGT 59.928 52.381 0.00 0.00 0.00 3.24
1154 1348 1.346722 GAGGACAAAACGGGGAGAAGA 59.653 52.381 0.00 0.00 0.00 2.87
1155 1349 1.610886 GGAGGACAAAACGGGGAGAAG 60.611 57.143 0.00 0.00 0.00 2.85
1156 1350 0.399075 GGAGGACAAAACGGGGAGAA 59.601 55.000 0.00 0.00 0.00 2.87
1157 1351 0.473117 AGGAGGACAAAACGGGGAGA 60.473 55.000 0.00 0.00 0.00 3.71
1158 1352 0.321653 CAGGAGGACAAAACGGGGAG 60.322 60.000 0.00 0.00 0.00 4.30
1159 1353 1.057851 ACAGGAGGACAAAACGGGGA 61.058 55.000 0.00 0.00 0.00 4.81
1160 1354 0.179001 AACAGGAGGACAAAACGGGG 60.179 55.000 0.00 0.00 0.00 5.73
1161 1355 2.554370 TAACAGGAGGACAAAACGGG 57.446 50.000 0.00 0.00 0.00 5.28
1163 1357 3.818773 ACCAATAACAGGAGGACAAAACG 59.181 43.478 0.00 0.00 0.00 3.60
1164 1358 5.784578 AACCAATAACAGGAGGACAAAAC 57.215 39.130 0.00 0.00 0.00 2.43
1165 1359 6.265876 GGTAAACCAATAACAGGAGGACAAAA 59.734 38.462 0.00 0.00 35.64 2.44
1166 1360 5.771165 GGTAAACCAATAACAGGAGGACAAA 59.229 40.000 0.00 0.00 35.64 2.83
1167 1361 5.073965 AGGTAAACCAATAACAGGAGGACAA 59.926 40.000 1.26 0.00 38.89 3.18
1168 1362 4.600111 AGGTAAACCAATAACAGGAGGACA 59.400 41.667 1.26 0.00 38.89 4.02
1169 1363 4.941873 CAGGTAAACCAATAACAGGAGGAC 59.058 45.833 1.26 0.00 38.89 3.85
1170 1364 4.847512 TCAGGTAAACCAATAACAGGAGGA 59.152 41.667 1.26 0.00 38.89 3.71
1171 1365 4.941873 GTCAGGTAAACCAATAACAGGAGG 59.058 45.833 1.26 0.00 38.89 4.30
1172 1366 5.556915 TGTCAGGTAAACCAATAACAGGAG 58.443 41.667 1.26 0.00 38.89 3.69
1173 1367 5.570205 TGTCAGGTAAACCAATAACAGGA 57.430 39.130 1.26 0.00 38.89 3.86
1174 1368 5.533154 TGTTGTCAGGTAAACCAATAACAGG 59.467 40.000 1.26 0.00 38.89 4.00
1175 1369 6.627395 TGTTGTCAGGTAAACCAATAACAG 57.373 37.500 1.26 0.00 38.89 3.16
1176 1370 6.460399 GCTTGTTGTCAGGTAAACCAATAACA 60.460 38.462 1.26 7.22 38.89 2.41
1177 1371 5.918576 GCTTGTTGTCAGGTAAACCAATAAC 59.081 40.000 1.26 4.89 38.89 1.89
1178 1372 5.830991 AGCTTGTTGTCAGGTAAACCAATAA 59.169 36.000 1.26 0.00 38.89 1.40
1179 1373 5.381757 AGCTTGTTGTCAGGTAAACCAATA 58.618 37.500 1.26 0.00 38.89 1.90
1180 1374 4.215109 AGCTTGTTGTCAGGTAAACCAAT 58.785 39.130 1.26 0.00 38.89 3.16
1181 1375 3.626930 AGCTTGTTGTCAGGTAAACCAA 58.373 40.909 1.26 0.00 38.89 3.67
1182 1376 3.211045 GAGCTTGTTGTCAGGTAAACCA 58.789 45.455 1.26 0.00 38.89 3.67
1183 1377 2.552743 GGAGCTTGTTGTCAGGTAAACC 59.447 50.000 0.00 0.00 0.00 3.27
1184 1378 2.223377 CGGAGCTTGTTGTCAGGTAAAC 59.777 50.000 0.00 0.00 0.00 2.01
1185 1379 2.158871 ACGGAGCTTGTTGTCAGGTAAA 60.159 45.455 0.00 0.00 0.00 2.01
1186 1380 1.414919 ACGGAGCTTGTTGTCAGGTAA 59.585 47.619 0.00 0.00 0.00 2.85
1187 1381 1.045407 ACGGAGCTTGTTGTCAGGTA 58.955 50.000 0.00 0.00 0.00 3.08
1188 1382 0.532862 CACGGAGCTTGTTGTCAGGT 60.533 55.000 0.00 0.00 0.00 4.00
1189 1383 0.249868 TCACGGAGCTTGTTGTCAGG 60.250 55.000 0.00 0.00 0.00 3.86
1190 1384 1.800805 ATCACGGAGCTTGTTGTCAG 58.199 50.000 0.00 0.00 0.00 3.51
1191 1385 2.299013 ACTATCACGGAGCTTGTTGTCA 59.701 45.455 0.00 0.00 0.00 3.58
1192 1386 2.668457 CACTATCACGGAGCTTGTTGTC 59.332 50.000 0.00 0.00 0.00 3.18
1193 1387 2.612972 CCACTATCACGGAGCTTGTTGT 60.613 50.000 0.00 0.00 0.00 3.32
1194 1388 2.002586 CCACTATCACGGAGCTTGTTG 58.997 52.381 0.00 0.00 0.00 3.33
1195 1389 1.899814 TCCACTATCACGGAGCTTGTT 59.100 47.619 0.00 0.00 0.00 2.83
1196 1390 1.204941 GTCCACTATCACGGAGCTTGT 59.795 52.381 0.00 0.00 29.98 3.16
1197 1391 1.204704 TGTCCACTATCACGGAGCTTG 59.795 52.381 0.00 0.00 29.98 4.01
1198 1392 1.478510 CTGTCCACTATCACGGAGCTT 59.521 52.381 0.00 0.00 29.98 3.74
1199 1393 1.107114 CTGTCCACTATCACGGAGCT 58.893 55.000 0.00 0.00 29.98 4.09
1200 1394 0.103208 CCTGTCCACTATCACGGAGC 59.897 60.000 0.00 0.00 29.98 4.70
1201 1395 1.405821 GACCTGTCCACTATCACGGAG 59.594 57.143 0.00 0.00 29.98 4.63
1202 1396 1.005569 AGACCTGTCCACTATCACGGA 59.994 52.381 0.00 0.00 0.00 4.69
1203 1397 1.135139 CAGACCTGTCCACTATCACGG 59.865 57.143 0.00 0.00 0.00 4.94
1204 1398 2.092323 TCAGACCTGTCCACTATCACG 58.908 52.381 0.00 0.00 0.00 4.35
1205 1399 4.537135 TTTCAGACCTGTCCACTATCAC 57.463 45.455 0.00 0.00 0.00 3.06
1206 1400 5.560722 TTTTTCAGACCTGTCCACTATCA 57.439 39.130 0.00 0.00 0.00 2.15
1235 1429 1.375098 GCATTCCTGCTGGTCTCTGC 61.375 60.000 9.73 10.29 45.32 4.26
1246 1440 5.747197 GCAGTTTGATTATTCAGCATTCCTG 59.253 40.000 0.00 0.00 43.17 3.86
1286 1628 2.992543 GCTGTTGCAGTAAGTCAGAGAG 59.007 50.000 0.00 0.00 39.41 3.20
1341 1683 0.032403 TTTCTGCATGTGTGGCTTGC 59.968 50.000 0.00 0.00 45.27 4.01
1366 1708 0.680618 TGGCTGGGTTTGCAATTCTG 59.319 50.000 0.00 0.00 0.00 3.02
1368 1710 2.252976 TTTGGCTGGGTTTGCAATTC 57.747 45.000 0.00 0.00 0.00 2.17
1369 1711 2.955342 ATTTGGCTGGGTTTGCAATT 57.045 40.000 0.00 0.00 0.00 2.32
1370 1712 3.172339 TCTATTTGGCTGGGTTTGCAAT 58.828 40.909 0.00 0.00 0.00 3.56
1372 1714 2.300956 TCTATTTGGCTGGGTTTGCA 57.699 45.000 0.00 0.00 0.00 4.08
1373 1715 2.094026 CCTTCTATTTGGCTGGGTTTGC 60.094 50.000 0.00 0.00 0.00 3.68
1374 1716 2.094026 GCCTTCTATTTGGCTGGGTTTG 60.094 50.000 0.00 0.00 45.26 2.93
1375 1717 2.179427 GCCTTCTATTTGGCTGGGTTT 58.821 47.619 0.00 0.00 45.26 3.27
1377 1719 3.596362 GCCTTCTATTTGGCTGGGT 57.404 52.632 0.00 0.00 45.26 4.51
1404 1746 5.892348 AGAAAGTAGGAACATTGGTTGGAT 58.108 37.500 0.00 0.00 37.36 3.41
1430 1772 7.332433 TGTATTCCCCAAGAGGTAAAAACTA 57.668 36.000 0.00 0.00 0.00 2.24
1431 1773 6.208840 TGTATTCCCCAAGAGGTAAAAACT 57.791 37.500 0.00 0.00 0.00 2.66
1432 1774 6.904463 TTGTATTCCCCAAGAGGTAAAAAC 57.096 37.500 0.00 0.00 0.00 2.43
1433 1775 6.666113 GGATTGTATTCCCCAAGAGGTAAAAA 59.334 38.462 0.00 0.00 0.00 1.94
1449 1791 6.882140 TGTACGAAGATGGTTTGGATTGTATT 59.118 34.615 0.00 0.00 0.00 1.89
1451 1793 5.795972 TGTACGAAGATGGTTTGGATTGTA 58.204 37.500 0.00 0.00 0.00 2.41
1470 1812 4.141551 CCAAAGGAAGGGGGTAGTATGTAC 60.142 50.000 0.00 0.00 0.00 2.90
1496 1838 0.610232 AGGCCTTCTTTGCTTGCGAT 60.610 50.000 0.00 0.00 0.00 4.58
1579 1922 4.332828 GTTTTGTGGGTGTTAGGCTATCT 58.667 43.478 0.00 0.00 0.00 1.98
1583 1926 1.063567 TGGTTTTGTGGGTGTTAGGCT 60.064 47.619 0.00 0.00 0.00 4.58
1653 1996 3.389983 TGAGTTTTTCGGGGAGAAGAAGA 59.610 43.478 0.00 0.00 40.40 2.87
1693 2038 4.207165 GGATGTTGTTGTACCATATGCCT 58.793 43.478 0.00 0.00 0.00 4.75
1760 2106 4.048970 ACTTACCAGAGGAACTGCTAGA 57.951 45.455 0.00 0.00 44.52 2.43
1795 2141 6.014669 AGTCTAACAAGACAAGATCAGAGCTT 60.015 38.462 8.16 0.00 41.02 3.74
1849 2195 3.490761 CGGCTTCAGTGGTGATTTTGTTT 60.491 43.478 0.00 0.00 30.85 2.83
1855 2201 1.675641 GGCGGCTTCAGTGGTGATT 60.676 57.895 0.00 0.00 30.85 2.57
1878 2227 1.137872 AGTCCAGCAGTATAGCAGCAC 59.862 52.381 0.00 0.00 36.85 4.40
1933 2282 6.233434 GTGATGGAAACTCTGCCATATATCA 58.767 40.000 0.00 0.00 44.60 2.15
1948 2297 0.474614 TGTCGGTTGGGTGATGGAAA 59.525 50.000 0.00 0.00 0.00 3.13
1996 2345 3.568007 GCATGAAGAGGTTGTTGTTACCA 59.432 43.478 0.00 0.00 38.16 3.25
1997 2346 3.568007 TGCATGAAGAGGTTGTTGTTACC 59.432 43.478 0.00 0.00 35.85 2.85
1999 2351 3.568007 GGTGCATGAAGAGGTTGTTGTTA 59.432 43.478 0.00 0.00 0.00 2.41
2013 2365 3.381983 AGGCGACGAGGTGCATGA 61.382 61.111 0.00 0.00 0.00 3.07
2039 2391 3.767131 TCACTCGTAGATGGGTCATCAAA 59.233 43.478 10.08 0.00 42.72 2.69
2040 2392 3.130516 GTCACTCGTAGATGGGTCATCAA 59.869 47.826 10.08 0.00 42.72 2.57
2068 2420 1.070786 GCTCGAGTCACCACCCAAA 59.929 57.895 15.13 0.00 0.00 3.28
2140 2504 1.139058 GCGGAGACCAATACACCATCT 59.861 52.381 0.00 0.00 0.00 2.90
2160 2524 5.067954 TGAATTCCTCTGATACATGCATGG 58.932 41.667 29.41 12.19 0.00 3.66
2161 2525 5.181433 CCTGAATTCCTCTGATACATGCATG 59.819 44.000 25.09 25.09 0.00 4.06
2162 2526 5.163120 ACCTGAATTCCTCTGATACATGCAT 60.163 40.000 2.27 0.00 0.00 3.96
2163 2527 4.164796 ACCTGAATTCCTCTGATACATGCA 59.835 41.667 2.27 0.00 0.00 3.96
2180 2544 1.075212 TGCAACATGATGGGACCTGAA 59.925 47.619 0.00 0.00 0.00 3.02
2198 2562 3.447742 CCCTCTGTTGAAAGTTGTTTGC 58.552 45.455 0.00 0.00 0.00 3.68
2208 2572 1.415672 AACTCGCCCCCTCTGTTGAA 61.416 55.000 0.00 0.00 0.00 2.69
2234 2598 2.071540 CCGTCAGAGACAGTGTACGTA 58.928 52.381 12.98 0.00 32.09 3.57
2258 2622 3.173390 GATCATGCGCGTCCTTGGC 62.173 63.158 8.43 0.00 0.00 4.52
2276 2640 0.179084 CCATACCCGTGTAGTGCAGG 60.179 60.000 0.00 0.00 0.00 4.85
2291 2655 3.054287 TCCACGCCAGGAATTTTACCATA 60.054 43.478 0.00 0.00 33.93 2.74
2385 2749 1.513160 CGCAATAACCAAACGGGCG 60.513 57.895 0.00 0.00 42.05 6.13
2396 2760 1.737236 GTCTGTGTGGCATCGCAATAA 59.263 47.619 0.00 0.00 34.92 1.40
2455 2819 5.494390 TCCTAGGGAAAAGTTAAGACCAC 57.506 43.478 9.46 0.00 0.00 4.16
2519 2883 7.750903 GTCTTCATGTTAAGCAAGGTAATGAAC 59.249 37.037 0.00 0.00 31.33 3.18
2731 3104 1.763545 GGAGGTACAGATTCTCCCCAC 59.236 57.143 4.26 0.00 40.76 4.61
2811 3189 9.686683 ACACAATCTTAAGTTAATAGGCAATCT 57.313 29.630 1.63 0.00 0.00 2.40
2852 3250 6.959639 ATTGTACTGGGCTTTATTGGTATG 57.040 37.500 0.00 0.00 0.00 2.39
2865 3263 4.704540 TGCCATGTCTTTAATTGTACTGGG 59.295 41.667 0.00 0.00 0.00 4.45
2866 3264 5.415701 ACTGCCATGTCTTTAATTGTACTGG 59.584 40.000 0.00 0.00 0.00 4.00
2867 3265 6.500684 ACTGCCATGTCTTTAATTGTACTG 57.499 37.500 0.00 0.00 0.00 2.74
2925 3339 8.879759 CGTCATGTGTCTTAGTGGTATAATTTT 58.120 33.333 0.00 0.00 0.00 1.82
2926 3340 8.255206 TCGTCATGTGTCTTAGTGGTATAATTT 58.745 33.333 0.00 0.00 0.00 1.82
2928 3342 7.284716 TCTCGTCATGTGTCTTAGTGGTATAAT 59.715 37.037 0.00 0.00 0.00 1.28
2929 3343 6.600427 TCTCGTCATGTGTCTTAGTGGTATAA 59.400 38.462 0.00 0.00 0.00 0.98
2931 3345 4.948004 TCTCGTCATGTGTCTTAGTGGTAT 59.052 41.667 0.00 0.00 0.00 2.73
2932 3346 4.329392 TCTCGTCATGTGTCTTAGTGGTA 58.671 43.478 0.00 0.00 0.00 3.25
2933 3347 3.154710 TCTCGTCATGTGTCTTAGTGGT 58.845 45.455 0.00 0.00 0.00 4.16
2936 3350 5.184096 AGTGAATCTCGTCATGTGTCTTAGT 59.816 40.000 0.00 0.00 0.00 2.24
2937 3351 5.514559 CAGTGAATCTCGTCATGTGTCTTAG 59.485 44.000 0.00 0.00 0.00 2.18
2957 3380 5.287674 AGTCCTATGATCATCCAACAGTG 57.712 43.478 12.53 0.00 0.00 3.66
2988 3416 7.188834 ACATACGCATGTGAGAACAAAATATG 58.811 34.615 14.43 9.33 43.89 1.78
3001 3429 4.503007 GGTAGTAGTGAACATACGCATGTG 59.497 45.833 1.08 4.30 44.83 3.21
3006 3434 3.114065 GCTGGTAGTAGTGAACATACGC 58.886 50.000 0.00 0.00 0.00 4.42
3035 3488 4.702131 ACTGATTTTCATGCAAGGTAGGAC 59.298 41.667 0.00 0.00 0.00 3.85
3151 3993 3.955524 TGGTTTAGGTGGAAAGGTGAA 57.044 42.857 0.00 0.00 0.00 3.18
3154 3996 5.594199 ACTATTGGTTTAGGTGGAAAGGT 57.406 39.130 0.00 0.00 0.00 3.50
3233 4123 6.767902 TCTTCTTACTGACTGCAAAAGACAAT 59.232 34.615 0.00 0.00 30.26 2.71
3264 4159 1.372087 GGGAGTGCAATCTTCAGCGG 61.372 60.000 14.60 0.00 0.00 5.52
3284 4179 4.711846 AGTATCAGTAGACTTGCCATGACA 59.288 41.667 0.00 0.00 0.00 3.58
3315 4210 3.064207 TGCGTATCCAGACAAGACAAAC 58.936 45.455 0.00 0.00 0.00 2.93
3404 4299 8.618677 CCTGTCAGTAGTTAATACGAGTTATGA 58.381 37.037 0.00 0.00 39.55 2.15
3412 4307 4.267928 GCTTGCCTGTCAGTAGTTAATACG 59.732 45.833 0.00 0.00 39.55 3.06
3420 4315 0.035317 TGGTGCTTGCCTGTCAGTAG 59.965 55.000 0.00 0.00 0.00 2.57
3468 4370 5.808366 TCAGAGTTGTCCAGTTGTTCTAT 57.192 39.130 0.00 0.00 0.00 1.98
3485 4387 6.809630 TTCTCATCGTATAGTCCATCAGAG 57.190 41.667 0.00 0.00 0.00 3.35
3516 4419 6.600882 ATCTTTGAAGCTGATCCACAAAAT 57.399 33.333 0.00 0.00 31.70 1.82
3539 4442 3.384168 ACCATCTGTAGCAGGGACAATA 58.616 45.455 0.00 0.00 31.51 1.90
3584 4487 0.460987 CTACGCCAAAGCCTCCTCTG 60.461 60.000 0.00 0.00 34.57 3.35
3628 4531 6.588756 TGCCTTTCACTACTGTAATCGTTAAG 59.411 38.462 0.00 0.00 0.00 1.85
3631 4534 4.890088 TGCCTTTCACTACTGTAATCGTT 58.110 39.130 0.00 0.00 0.00 3.85
3670 4580 6.490040 GTGCCCTACATGGTTACATAATTCAT 59.510 38.462 0.00 0.00 34.99 2.57
3857 4767 4.752661 TTGTTGGGCAAGTATTCGTAAC 57.247 40.909 0.00 0.00 32.52 2.50
6007 6952 6.186957 TCAATAGCCTAATTTGACCACACAT 58.813 36.000 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.