Multiple sequence alignment - TraesCS2A01G536300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G536300 chr2A 100.000 4973 0 0 1 4973 750553461 750558433 0.000000e+00 9184.0
1 TraesCS2A01G536300 chr2A 82.329 249 34 2 3828 4066 750208555 750208307 1.810000e-49 207.0
2 TraesCS2A01G536300 chr2A 82.353 238 30 8 3842 4068 720584072 720583836 3.930000e-46 196.0
3 TraesCS2A01G536300 chr2A 80.632 253 39 6 3825 4067 751233988 751234240 2.360000e-43 187.0
4 TraesCS2A01G536300 chr2A 83.938 193 21 7 3840 4022 721063415 721063223 5.120000e-40 176.0
5 TraesCS2A01G536300 chr2A 85.890 163 23 0 4661 4823 721008561 721008399 1.840000e-39 174.0
6 TraesCS2A01G536300 chr2A 98.361 61 1 0 2356 2416 361381612 361381672 1.890000e-19 108.0
7 TraesCS2A01G536300 chr2A 75.000 196 49 0 2072 2267 720520376 720520181 1.910000e-14 91.6
8 TraesCS2A01G536300 chr2A 75.691 181 38 6 3050 3227 720060948 720060771 8.870000e-13 86.1
9 TraesCS2A01G536300 chr2A 77.778 108 23 1 3120 3226 52762969 52762862 1.160000e-06 65.8
10 TraesCS2A01G536300 chr2B 94.197 2533 105 25 2471 4968 758801026 758798501 0.000000e+00 3825.0
11 TraesCS2A01G536300 chr2B 95.168 1490 70 1 878 2365 758802498 758801009 0.000000e+00 2351.0
12 TraesCS2A01G536300 chr2B 92.449 1311 71 18 3687 4973 758112054 758113360 0.000000e+00 1847.0
13 TraesCS2A01G536300 chr2B 82.051 234 40 2 3483 3715 707240290 707240058 1.090000e-46 198.0
14 TraesCS2A01G536300 chr2B 82.553 235 31 7 3841 4065 707959550 707959316 1.090000e-46 198.0
15 TraesCS2A01G536300 chr2B 86.061 165 23 0 4661 4825 707462252 707462088 1.420000e-40 178.0
16 TraesCS2A01G536300 chr2B 81.498 227 32 1 3851 4067 758670797 758671023 1.420000e-40 178.0
17 TraesCS2A01G536300 chr2B 85.455 165 24 0 4661 4825 707630855 707630691 6.620000e-39 172.0
18 TraesCS2A01G536300 chr2B 84.302 172 27 0 4664 4835 707414796 707414625 8.560000e-38 169.0
19 TraesCS2A01G536300 chr2B 84.848 165 25 0 4661 4825 707690546 707690382 3.080000e-37 167.0
20 TraesCS2A01G536300 chr2B 84.906 159 23 1 591 748 758802657 758802499 5.150000e-35 159.0
21 TraesCS2A01G536300 chr2B 72.821 390 96 7 1883 2267 707464217 707463833 1.880000e-24 124.0
22 TraesCS2A01G536300 chr2B 98.361 61 1 0 2356 2416 354879216 354879156 1.890000e-19 108.0
23 TraesCS2A01G536300 chr2B 81.443 97 16 2 3132 3227 707415647 707415552 1.480000e-10 78.7
24 TraesCS2A01G536300 chr2B 94.595 37 2 0 3891 3927 707965356 707965320 1.930000e-04 58.4
25 TraesCS2A01G536300 chr2D 96.002 2226 63 18 2768 4973 619404294 619406513 0.000000e+00 3594.0
26 TraesCS2A01G536300 chr2D 95.186 1558 70 3 810 2365 619402362 619403916 0.000000e+00 2457.0
27 TraesCS2A01G536300 chr2D 90.253 277 16 3 2488 2763 619403994 619404260 7.920000e-93 351.0
28 TraesCS2A01G536300 chr2D 77.907 602 95 19 3482 4067 619568324 619568903 1.710000e-89 340.0
29 TraesCS2A01G536300 chr2D 83.884 242 16 9 275 508 619401915 619402141 5.040000e-50 209.0
30 TraesCS2A01G536300 chr2D 86.826 167 21 1 591 756 619402181 619402347 8.500000e-43 185.0
31 TraesCS2A01G536300 chr2D 84.571 175 25 2 4650 4822 585916351 585916525 6.620000e-39 172.0
32 TraesCS2A01G536300 chr2D 82.857 175 30 0 4660 4834 585893625 585893451 1.850000e-34 158.0
33 TraesCS2A01G536300 chr2D 100.000 59 0 0 2358 2416 382455935 382455993 5.260000e-20 110.0
34 TraesCS2A01G536300 chr2D 72.010 393 100 7 1880 2267 585914540 585914927 1.890000e-19 108.0
35 TraesCS2A01G536300 chr2D 87.013 77 10 0 3863 3939 12626132 12626056 2.470000e-13 87.9
36 TraesCS2A01G536300 chr2D 94.340 53 3 0 2440 2492 54074071 54074019 1.150000e-11 82.4
37 TraesCS2A01G536300 chr2D 80.412 97 17 2 3132 3227 585894506 585894411 6.910000e-09 73.1
38 TraesCS2A01G536300 chr7D 71.787 1276 316 37 1006 2265 585556503 585557750 6.210000e-84 322.0
39 TraesCS2A01G536300 chr7D 77.660 188 37 4 3046 3231 585558296 585558480 5.260000e-20 110.0
40 TraesCS2A01G536300 chr6B 72.333 900 228 18 1380 2267 675451738 675450848 3.820000e-66 263.0
41 TraesCS2A01G536300 chr6B 88.889 72 4 3 2416 2485 553059012 553059081 8.870000e-13 86.1
42 TraesCS2A01G536300 chr6B 96.078 51 2 0 2440 2490 487209522 487209572 3.190000e-12 84.2
43 TraesCS2A01G536300 chr6D 83.237 173 28 1 4654 4825 446620400 446620228 1.850000e-34 158.0
44 TraesCS2A01G536300 chr6D 88.095 126 14 1 4654 4778 467019802 467019927 1.120000e-31 148.0
45 TraesCS2A01G536300 chr6D 95.312 64 3 0 2353 2416 143978921 143978984 8.810000e-18 102.0
46 TraesCS2A01G536300 chr6D 94.643 56 3 0 2430 2485 86550862 86550917 2.470000e-13 87.9
47 TraesCS2A01G536300 chr6D 94.545 55 3 0 2439 2493 131945884 131945830 8.870000e-13 86.1
48 TraesCS2A01G536300 chr6A 85.612 139 19 1 4654 4791 593436941 593436803 1.440000e-30 145.0
49 TraesCS2A01G536300 chr6A 91.935 62 3 2 2434 2493 170907873 170907812 8.870000e-13 86.1
50 TraesCS2A01G536300 chr7B 78.495 186 39 1 3046 3231 654917753 654917937 2.430000e-23 121.0
51 TraesCS2A01G536300 chr7B 90.141 71 5 2 2416 2485 64413078 64413009 1.910000e-14 91.6
52 TraesCS2A01G536300 chr7B 87.324 71 7 2 2416 2485 64413034 64413103 4.130000e-11 80.5
53 TraesCS2A01G536300 chr7A 77.005 187 40 3 3046 3231 675588886 675589070 2.450000e-18 104.0
54 TraesCS2A01G536300 chr5A 82.677 127 11 9 2361 2485 404235385 404235268 8.810000e-18 102.0
55 TraesCS2A01G536300 chr3B 91.892 74 4 2 2343 2416 530257571 530257500 8.810000e-18 102.0
56 TraesCS2A01G536300 chr3B 89.873 79 3 5 2360 2434 728502948 728502871 4.100000e-16 97.1
57 TraesCS2A01G536300 chr3B 85.526 76 9 2 2416 2489 581079143 581079068 1.480000e-10 78.7
58 TraesCS2A01G536300 chr1B 94.118 68 3 1 2349 2416 154165050 154165116 8.810000e-18 102.0
59 TraesCS2A01G536300 chr1D 92.647 68 5 0 2349 2416 46311345 46311278 1.140000e-16 99.0
60 TraesCS2A01G536300 chr1D 96.000 50 2 0 2440 2489 46311286 46311335 1.150000e-11 82.4
61 TraesCS2A01G536300 chr1A 90.411 73 4 3 2416 2485 41366817 41366745 5.300000e-15 93.5
62 TraesCS2A01G536300 chr1A 89.041 73 5 2 2416 2485 41366770 41366842 2.470000e-13 87.9
63 TraesCS2A01G536300 chr1A 89.062 64 6 1 2428 2490 23309953 23309890 1.480000e-10 78.7
64 TraesCS2A01G536300 chr5B 73.494 249 54 8 3829 4066 532239680 532239927 3.190000e-12 84.2
65 TraesCS2A01G536300 chr5B 92.727 55 4 0 2440 2494 518315762 518315708 4.130000e-11 80.5
66 TraesCS2A01G536300 chr5D 75.138 181 41 2 3505 3685 438443063 438442887 1.150000e-11 82.4
67 TraesCS2A01G536300 chr4A 86.111 72 9 1 2416 2487 664232492 664232422 5.340000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G536300 chr2A 750553461 750558433 4972 False 9184.000000 9184 100.000000 1 4973 1 chr2A.!!$F2 4972
1 TraesCS2A01G536300 chr2B 758798501 758802657 4156 True 2111.666667 3825 91.423667 591 4968 3 chr2B.!!$R9 4377
2 TraesCS2A01G536300 chr2B 758112054 758113360 1306 False 1847.000000 1847 92.449000 3687 4973 1 chr2B.!!$F1 1286
3 TraesCS2A01G536300 chr2D 619401915 619406513 4598 False 1359.200000 3594 90.430200 275 4973 5 chr2D.!!$F4 4698
4 TraesCS2A01G536300 chr2D 619568324 619568903 579 False 340.000000 340 77.907000 3482 4067 1 chr2D.!!$F2 585
5 TraesCS2A01G536300 chr7D 585556503 585558480 1977 False 216.000000 322 74.723500 1006 3231 2 chr7D.!!$F1 2225
6 TraesCS2A01G536300 chr6B 675450848 675451738 890 True 263.000000 263 72.333000 1380 2267 1 chr6B.!!$R1 887

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.033228 GATGTGAGATGAGAGGCGGG 59.967 60.000 0.00 0.00 0.00 6.13 F
244 245 0.105778 GATGAGAGGCGGGGAAGAAG 59.894 60.000 0.00 0.00 0.00 2.85 F
568 575 0.249784 CGCATCTGACCTCAGGGATG 60.250 60.000 0.00 0.00 43.91 3.51 F
569 576 0.534652 GCATCTGACCTCAGGGATGC 60.535 60.000 15.30 15.30 42.73 3.91 F
1707 1718 0.245539 CCGTCGTGTACCAGACCATT 59.754 55.000 10.87 0.00 34.10 3.16 F
2001 2012 0.739112 GGAGAGTGGAAGCGCTGAAG 60.739 60.000 12.58 0.00 0.00 3.02 F
3162 3213 2.441410 TGAAGATATTGTGGCCGCAAA 58.559 42.857 33.81 22.57 31.63 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1102 1110 0.179089 CCATCCTTGGAGACGAGCAG 60.179 60.000 0.00 0.0 46.92 4.24 R
1606 1617 0.320771 CAGTACAGCTTGGCTCCGTT 60.321 55.000 0.00 0.0 36.40 4.44 R
1707 1718 0.986019 ACCTGTCCCCTGTGTTGACA 60.986 55.000 0.00 0.0 37.45 3.58 R
1869 1880 1.218047 GCCACACGAGCCATAGACA 59.782 57.895 0.00 0.0 0.00 3.41 R
2891 2939 1.377202 CAGGCATGCTACAACCGGT 60.377 57.895 18.92 0.0 0.00 5.28 R
3267 3318 1.742761 ATCAGACCACAATTCTGGCG 58.257 50.000 0.00 0.0 40.87 5.69 R
4586 4675 0.755327 AAGGGGCAGTTTGGTCACAC 60.755 55.000 0.00 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.796764 GGAAGCTTCTGGATCCTGG 57.203 57.895 25.05 8.65 0.00 4.45
19 20 1.207791 GGAAGCTTCTGGATCCTGGA 58.792 55.000 25.05 9.10 0.00 3.86
20 21 1.140652 GGAAGCTTCTGGATCCTGGAG 59.859 57.143 25.05 20.22 0.00 3.86
21 22 0.545646 AAGCTTCTGGATCCTGGAGC 59.454 55.000 34.14 34.14 43.94 4.70
22 23 1.148048 GCTTCTGGATCCTGGAGCC 59.852 63.158 32.22 23.92 39.62 4.70
23 24 1.630126 GCTTCTGGATCCTGGAGCCA 61.630 60.000 32.22 30.21 46.41 4.75
26 27 3.473647 TGGATCCTGGAGCCAGCG 61.474 66.667 28.93 5.03 43.58 5.18
27 28 4.925861 GGATCCTGGAGCCAGCGC 62.926 72.222 25.55 0.00 42.35 5.92
28 29 4.925861 GATCCTGGAGCCAGCGCC 62.926 72.222 11.07 5.35 42.35 6.53
74 75 2.809601 CGTGAGGTTCGCCGGAAG 60.810 66.667 5.05 0.00 43.66 3.46
79 80 2.202892 GGTTCGCCGGAAGCCTAG 60.203 66.667 5.05 0.00 43.24 3.02
80 81 2.890961 GTTCGCCGGAAGCCTAGC 60.891 66.667 5.05 0.00 38.78 3.42
81 82 4.157120 TTCGCCGGAAGCCTAGCC 62.157 66.667 5.05 0.00 38.78 3.93
84 85 4.109675 GCCGGAAGCCTAGCCCAA 62.110 66.667 5.05 0.00 34.35 4.12
85 86 2.674754 CCGGAAGCCTAGCCCAAA 59.325 61.111 0.00 0.00 0.00 3.28
86 87 1.227383 CCGGAAGCCTAGCCCAAAT 59.773 57.895 0.00 0.00 0.00 2.32
87 88 1.103398 CCGGAAGCCTAGCCCAAATG 61.103 60.000 0.00 0.00 0.00 2.32
88 89 0.394352 CGGAAGCCTAGCCCAAATGT 60.394 55.000 0.00 0.00 0.00 2.71
89 90 1.393603 GGAAGCCTAGCCCAAATGTC 58.606 55.000 0.00 0.00 0.00 3.06
90 91 1.340991 GGAAGCCTAGCCCAAATGTCA 60.341 52.381 0.00 0.00 0.00 3.58
91 92 2.019984 GAAGCCTAGCCCAAATGTCAG 58.980 52.381 0.00 0.00 0.00 3.51
92 93 1.289160 AGCCTAGCCCAAATGTCAGA 58.711 50.000 0.00 0.00 0.00 3.27
93 94 1.849039 AGCCTAGCCCAAATGTCAGAT 59.151 47.619 0.00 0.00 0.00 2.90
94 95 2.158696 AGCCTAGCCCAAATGTCAGATC 60.159 50.000 0.00 0.00 0.00 2.75
95 96 2.856222 CCTAGCCCAAATGTCAGATCC 58.144 52.381 0.00 0.00 0.00 3.36
96 97 2.487934 CTAGCCCAAATGTCAGATCCG 58.512 52.381 0.00 0.00 0.00 4.18
97 98 0.911769 AGCCCAAATGTCAGATCCGA 59.088 50.000 0.00 0.00 0.00 4.55
98 99 1.134280 AGCCCAAATGTCAGATCCGAG 60.134 52.381 0.00 0.00 0.00 4.63
99 100 1.407437 GCCCAAATGTCAGATCCGAGT 60.407 52.381 0.00 0.00 0.00 4.18
100 101 2.941415 GCCCAAATGTCAGATCCGAGTT 60.941 50.000 0.00 0.00 0.00 3.01
101 102 2.679837 CCCAAATGTCAGATCCGAGTTG 59.320 50.000 0.00 0.00 0.00 3.16
102 103 2.679837 CCAAATGTCAGATCCGAGTTGG 59.320 50.000 0.00 0.00 40.09 3.77
115 116 5.799827 TCCGAGTTGGAATTTTGGATTTT 57.200 34.783 0.00 0.00 46.38 1.82
116 117 5.778862 TCCGAGTTGGAATTTTGGATTTTC 58.221 37.500 0.00 0.00 46.38 2.29
117 118 4.929211 CCGAGTTGGAATTTTGGATTTTCC 59.071 41.667 0.00 0.00 42.00 3.13
118 119 5.510520 CCGAGTTGGAATTTTGGATTTTCCA 60.511 40.000 0.00 0.00 45.39 3.53
131 132 6.902771 TGGATTTTCCAAGGTAAAATTCGA 57.097 33.333 0.00 0.00 45.00 3.71
132 133 7.291411 TGGATTTTCCAAGGTAAAATTCGAA 57.709 32.000 0.00 0.00 45.00 3.71
133 134 7.727181 TGGATTTTCCAAGGTAAAATTCGAAA 58.273 30.769 0.00 0.00 45.00 3.46
134 135 7.870445 TGGATTTTCCAAGGTAAAATTCGAAAG 59.130 33.333 0.00 0.00 45.00 2.62
135 136 7.870954 GGATTTTCCAAGGTAAAATTCGAAAGT 59.129 33.333 0.00 0.00 36.82 2.66
136 137 9.902196 GATTTTCCAAGGTAAAATTCGAAAGTA 57.098 29.630 0.00 0.00 36.82 2.24
139 140 9.902196 TTTCCAAGGTAAAATTCGAAAGTATTC 57.098 29.630 0.00 0.00 30.38 1.75
140 141 8.624367 TCCAAGGTAAAATTCGAAAGTATTCA 57.376 30.769 0.00 0.00 35.15 2.57
141 142 9.069082 TCCAAGGTAAAATTCGAAAGTATTCAA 57.931 29.630 0.00 0.00 35.15 2.69
142 143 9.124807 CCAAGGTAAAATTCGAAAGTATTCAAC 57.875 33.333 0.00 0.00 35.15 3.18
143 144 9.893305 CAAGGTAAAATTCGAAAGTATTCAACT 57.107 29.630 0.00 0.00 41.49 3.16
145 146 9.280174 AGGTAAAATTCGAAAGTATTCAACTCA 57.720 29.630 0.00 0.00 37.50 3.41
146 147 9.543018 GGTAAAATTCGAAAGTATTCAACTCAG 57.457 33.333 0.00 0.00 37.50 3.35
152 153 8.833231 TTCGAAAGTATTCAACTCAGAATTCT 57.167 30.769 0.88 0.88 37.50 2.40
153 154 8.244494 TCGAAAGTATTCAACTCAGAATTCTG 57.756 34.615 26.56 26.56 37.50 3.02
154 155 7.872993 TCGAAAGTATTCAACTCAGAATTCTGT 59.127 33.333 29.80 13.25 37.50 3.41
155 156 7.954248 CGAAAGTATTCAACTCAGAATTCTGTG 59.046 37.037 29.80 28.70 37.50 3.66
157 158 7.897575 AGTATTCAACTCAGAATTCTGTGTC 57.102 36.000 32.27 22.24 46.26 3.67
158 159 5.852738 ATTCAACTCAGAATTCTGTGTCG 57.147 39.130 32.27 25.56 46.26 4.35
159 160 3.059884 TCAACTCAGAATTCTGTGTCGC 58.940 45.455 32.27 0.00 46.26 5.19
160 161 1.702886 ACTCAGAATTCTGTGTCGCG 58.297 50.000 28.83 16.66 44.48 5.87
161 162 1.269723 ACTCAGAATTCTGTGTCGCGA 59.730 47.619 28.83 3.71 44.48 5.87
162 163 2.288213 ACTCAGAATTCTGTGTCGCGAA 60.288 45.455 28.83 11.83 44.48 4.70
163 164 2.058798 TCAGAATTCTGTGTCGCGAAC 58.941 47.619 29.80 12.37 44.12 3.95
164 165 1.126846 CAGAATTCTGTGTCGCGAACC 59.873 52.381 24.65 4.58 39.09 3.62
165 166 1.144969 GAATTCTGTGTCGCGAACCA 58.855 50.000 12.06 9.81 0.00 3.67
166 167 1.126846 GAATTCTGTGTCGCGAACCAG 59.873 52.381 23.34 23.34 0.00 4.00
167 168 1.291877 ATTCTGTGTCGCGAACCAGC 61.292 55.000 24.11 8.76 0.00 4.85
168 169 2.356313 CTGTGTCGCGAACCAGCT 60.356 61.111 12.06 0.00 34.40 4.24
169 170 2.355837 TGTGTCGCGAACCAGCTC 60.356 61.111 12.06 0.00 34.40 4.09
170 171 2.355837 GTGTCGCGAACCAGCTCA 60.356 61.111 12.06 0.00 34.40 4.26
171 172 2.049156 TGTCGCGAACCAGCTCAG 60.049 61.111 12.06 0.00 34.40 3.35
172 173 2.258591 GTCGCGAACCAGCTCAGA 59.741 61.111 12.06 0.00 34.40 3.27
173 174 1.372997 GTCGCGAACCAGCTCAGAA 60.373 57.895 12.06 0.00 34.40 3.02
174 175 1.372997 TCGCGAACCAGCTCAGAAC 60.373 57.895 6.20 0.00 34.40 3.01
175 176 1.373497 CGCGAACCAGCTCAGAACT 60.373 57.895 0.00 0.00 34.40 3.01
176 177 0.946221 CGCGAACCAGCTCAGAACTT 60.946 55.000 0.00 0.00 34.40 2.66
177 178 0.514691 GCGAACCAGCTCAGAACTTG 59.485 55.000 0.00 0.00 0.00 3.16
178 179 1.151668 CGAACCAGCTCAGAACTTGG 58.848 55.000 0.00 0.00 36.76 3.61
179 180 1.541233 CGAACCAGCTCAGAACTTGGT 60.541 52.381 0.00 0.00 45.47 3.67
180 181 2.288825 CGAACCAGCTCAGAACTTGGTA 60.289 50.000 0.00 0.00 42.86 3.25
181 182 3.740115 GAACCAGCTCAGAACTTGGTAA 58.260 45.455 0.00 0.00 42.86 2.85
182 183 3.857157 ACCAGCTCAGAACTTGGTAAA 57.143 42.857 0.00 0.00 41.92 2.01
183 184 4.164843 ACCAGCTCAGAACTTGGTAAAA 57.835 40.909 0.00 0.00 41.92 1.52
184 185 4.729868 ACCAGCTCAGAACTTGGTAAAAT 58.270 39.130 0.00 0.00 41.92 1.82
185 186 4.762251 ACCAGCTCAGAACTTGGTAAAATC 59.238 41.667 0.00 0.00 41.92 2.17
186 187 4.761739 CCAGCTCAGAACTTGGTAAAATCA 59.238 41.667 0.00 0.00 0.00 2.57
187 188 5.241506 CCAGCTCAGAACTTGGTAAAATCAA 59.758 40.000 0.00 0.00 0.00 2.57
188 189 6.239008 CCAGCTCAGAACTTGGTAAAATCAAA 60.239 38.462 0.00 0.00 0.00 2.69
189 190 6.638468 CAGCTCAGAACTTGGTAAAATCAAAC 59.362 38.462 0.00 0.00 0.00 2.93
190 191 6.547510 AGCTCAGAACTTGGTAAAATCAAACT 59.452 34.615 0.00 0.00 0.00 2.66
191 192 6.638468 GCTCAGAACTTGGTAAAATCAAACTG 59.362 38.462 0.00 0.00 0.00 3.16
192 193 6.503524 TCAGAACTTGGTAAAATCAAACTGC 58.496 36.000 0.00 0.00 0.00 4.40
193 194 6.096141 TCAGAACTTGGTAAAATCAAACTGCA 59.904 34.615 0.00 0.00 0.00 4.41
194 195 6.756074 CAGAACTTGGTAAAATCAAACTGCAA 59.244 34.615 0.00 0.00 0.00 4.08
195 196 6.980397 AGAACTTGGTAAAATCAAACTGCAAG 59.020 34.615 0.00 0.00 42.29 4.01
196 197 6.463995 ACTTGGTAAAATCAAACTGCAAGA 57.536 33.333 0.00 0.00 37.43 3.02
197 198 6.507023 ACTTGGTAAAATCAAACTGCAAGAG 58.493 36.000 0.00 0.00 37.43 2.85
198 199 5.452078 TGGTAAAATCAAACTGCAAGAGG 57.548 39.130 0.00 0.00 37.43 3.69
199 200 4.280677 TGGTAAAATCAAACTGCAAGAGGG 59.719 41.667 0.00 0.00 37.43 4.30
200 201 4.321974 GGTAAAATCAAACTGCAAGAGGGG 60.322 45.833 0.00 0.00 37.43 4.79
201 202 1.928868 AATCAAACTGCAAGAGGGGG 58.071 50.000 0.00 0.00 37.43 5.40
202 203 1.075601 ATCAAACTGCAAGAGGGGGA 58.924 50.000 0.00 0.00 37.43 4.81
203 204 0.850100 TCAAACTGCAAGAGGGGGAA 59.150 50.000 0.00 0.00 37.43 3.97
204 205 1.216678 TCAAACTGCAAGAGGGGGAAA 59.783 47.619 0.00 0.00 37.43 3.13
205 206 2.038659 CAAACTGCAAGAGGGGGAAAA 58.961 47.619 0.00 0.00 37.43 2.29
206 207 2.634453 CAAACTGCAAGAGGGGGAAAAT 59.366 45.455 0.00 0.00 37.43 1.82
207 208 2.222227 ACTGCAAGAGGGGGAAAATC 57.778 50.000 0.00 0.00 37.43 2.17
208 209 1.713078 ACTGCAAGAGGGGGAAAATCT 59.287 47.619 0.00 0.00 37.43 2.40
209 210 2.291217 ACTGCAAGAGGGGGAAAATCTC 60.291 50.000 0.00 0.00 37.43 2.75
210 211 1.340017 TGCAAGAGGGGGAAAATCTCG 60.340 52.381 0.00 0.00 33.16 4.04
211 212 1.065418 GCAAGAGGGGGAAAATCTCGA 60.065 52.381 0.00 0.00 33.16 4.04
212 213 2.618045 GCAAGAGGGGGAAAATCTCGAA 60.618 50.000 0.00 0.00 33.16 3.71
213 214 3.891049 CAAGAGGGGGAAAATCTCGAAT 58.109 45.455 0.00 0.00 33.16 3.34
214 215 4.273318 CAAGAGGGGGAAAATCTCGAATT 58.727 43.478 0.00 0.00 33.16 2.17
215 216 4.157849 AGAGGGGGAAAATCTCGAATTC 57.842 45.455 0.00 0.00 33.16 2.17
216 217 2.872858 GAGGGGGAAAATCTCGAATTCG 59.127 50.000 21.78 21.78 41.45 3.34
229 230 4.900635 TCGAATTCGAGATGTGAGATGA 57.099 40.909 25.96 0.00 44.22 2.92
230 231 4.853268 TCGAATTCGAGATGTGAGATGAG 58.147 43.478 25.96 0.00 44.22 2.90
231 232 4.576463 TCGAATTCGAGATGTGAGATGAGA 59.424 41.667 25.96 0.00 44.22 3.27
232 233 4.911033 CGAATTCGAGATGTGAGATGAGAG 59.089 45.833 23.29 0.00 43.02 3.20
233 234 4.852134 ATTCGAGATGTGAGATGAGAGG 57.148 45.455 0.00 0.00 0.00 3.69
234 235 1.952990 TCGAGATGTGAGATGAGAGGC 59.047 52.381 0.00 0.00 0.00 4.70
235 236 1.334870 CGAGATGTGAGATGAGAGGCG 60.335 57.143 0.00 0.00 0.00 5.52
236 237 1.000385 GAGATGTGAGATGAGAGGCGG 60.000 57.143 0.00 0.00 0.00 6.13
237 238 0.033228 GATGTGAGATGAGAGGCGGG 59.967 60.000 0.00 0.00 0.00 6.13
238 239 1.406065 ATGTGAGATGAGAGGCGGGG 61.406 60.000 0.00 0.00 0.00 5.73
239 240 1.758514 GTGAGATGAGAGGCGGGGA 60.759 63.158 0.00 0.00 0.00 4.81
240 241 1.001631 TGAGATGAGAGGCGGGGAA 59.998 57.895 0.00 0.00 0.00 3.97
241 242 1.045350 TGAGATGAGAGGCGGGGAAG 61.045 60.000 0.00 0.00 0.00 3.46
242 243 0.757188 GAGATGAGAGGCGGGGAAGA 60.757 60.000 0.00 0.00 0.00 2.87
243 244 0.325671 AGATGAGAGGCGGGGAAGAA 60.326 55.000 0.00 0.00 0.00 2.52
244 245 0.105778 GATGAGAGGCGGGGAAGAAG 59.894 60.000 0.00 0.00 0.00 2.85
245 246 0.325671 ATGAGAGGCGGGGAAGAAGA 60.326 55.000 0.00 0.00 0.00 2.87
246 247 0.325671 TGAGAGGCGGGGAAGAAGAT 60.326 55.000 0.00 0.00 0.00 2.40
247 248 0.105778 GAGAGGCGGGGAAGAAGATG 59.894 60.000 0.00 0.00 0.00 2.90
248 249 1.147153 GAGGCGGGGAAGAAGATGG 59.853 63.158 0.00 0.00 0.00 3.51
249 250 1.616628 AGGCGGGGAAGAAGATGGT 60.617 57.895 0.00 0.00 0.00 3.55
250 251 1.208165 AGGCGGGGAAGAAGATGGTT 61.208 55.000 0.00 0.00 0.00 3.67
251 252 0.323451 GGCGGGGAAGAAGATGGTTT 60.323 55.000 0.00 0.00 0.00 3.27
252 253 1.545841 GCGGGGAAGAAGATGGTTTT 58.454 50.000 0.00 0.00 0.00 2.43
253 254 2.619590 GGCGGGGAAGAAGATGGTTTTA 60.620 50.000 0.00 0.00 0.00 1.52
254 255 3.288092 GCGGGGAAGAAGATGGTTTTAT 58.712 45.455 0.00 0.00 0.00 1.40
255 256 3.315470 GCGGGGAAGAAGATGGTTTTATC 59.685 47.826 0.00 0.00 0.00 1.75
256 257 4.781934 CGGGGAAGAAGATGGTTTTATCT 58.218 43.478 0.00 0.00 39.03 1.98
266 267 7.823745 AAGATGGTTTTATCTTCACACAAGT 57.176 32.000 0.00 0.00 42.22 3.16
267 268 7.440523 AGATGGTTTTATCTTCACACAAGTC 57.559 36.000 0.00 0.00 33.74 3.01
268 269 7.227156 AGATGGTTTTATCTTCACACAAGTCT 58.773 34.615 0.00 0.00 33.74 3.24
269 270 6.618287 TGGTTTTATCTTCACACAAGTCTG 57.382 37.500 0.00 0.00 0.00 3.51
270 271 6.119536 TGGTTTTATCTTCACACAAGTCTGT 58.880 36.000 0.00 0.00 35.63 3.41
271 272 6.260050 TGGTTTTATCTTCACACAAGTCTGTC 59.740 38.462 0.00 0.00 31.64 3.51
272 273 6.293462 GGTTTTATCTTCACACAAGTCTGTCC 60.293 42.308 0.00 0.00 31.64 4.02
273 274 5.808366 TTATCTTCACACAAGTCTGTCCT 57.192 39.130 0.00 0.00 31.64 3.85
276 277 2.910688 TCACACAAGTCTGTCCTTCC 57.089 50.000 0.00 0.00 31.64 3.46
288 289 7.496346 AGTCTGTCCTTCCAAGTTTATATGA 57.504 36.000 0.00 0.00 0.00 2.15
289 290 7.331791 AGTCTGTCCTTCCAAGTTTATATGAC 58.668 38.462 0.00 0.00 0.00 3.06
297 298 5.118990 TCCAAGTTTATATGACTGCAGAGC 58.881 41.667 23.35 12.52 0.00 4.09
317 318 4.320870 AGCCAATTTCAAGCAGGAATTTG 58.679 39.130 13.59 13.59 37.64 2.32
329 330 6.303903 AGCAGGAATTTGAATGGCTTATTT 57.696 33.333 0.00 0.00 0.00 1.40
330 331 6.110707 AGCAGGAATTTGAATGGCTTATTTG 58.889 36.000 0.00 0.00 0.00 2.32
333 336 6.036735 CAGGAATTTGAATGGCTTATTTGCAG 59.963 38.462 0.00 0.00 34.04 4.41
357 360 7.768120 CAGCTAAGAGGAACAAATACTCTTCAT 59.232 37.037 6.22 0.00 45.65 2.57
367 370 6.939551 CAAATACTCTTCATTTGTGGCTTG 57.060 37.500 0.00 0.00 38.17 4.01
368 371 5.649782 AATACTCTTCATTTGTGGCTTGG 57.350 39.130 0.00 0.00 0.00 3.61
369 372 2.242043 ACTCTTCATTTGTGGCTTGGG 58.758 47.619 0.00 0.00 0.00 4.12
370 373 2.242043 CTCTTCATTTGTGGCTTGGGT 58.758 47.619 0.00 0.00 0.00 4.51
371 374 2.229784 CTCTTCATTTGTGGCTTGGGTC 59.770 50.000 0.00 0.00 0.00 4.46
372 375 1.273327 CTTCATTTGTGGCTTGGGTCC 59.727 52.381 0.00 0.00 0.00 4.46
373 376 0.482446 TCATTTGTGGCTTGGGTCCT 59.518 50.000 0.00 0.00 0.00 3.85
407 410 7.868415 CGTTGATAATAGTCTAGCTTTTAGCCT 59.132 37.037 0.00 0.00 43.77 4.58
436 439 1.807142 GCCTGCTTCAGTCAACCTTAC 59.193 52.381 0.00 0.00 0.00 2.34
437 440 2.551071 GCCTGCTTCAGTCAACCTTACT 60.551 50.000 0.00 0.00 0.00 2.24
438 441 3.330267 CCTGCTTCAGTCAACCTTACTC 58.670 50.000 0.00 0.00 0.00 2.59
439 442 3.330267 CTGCTTCAGTCAACCTTACTCC 58.670 50.000 0.00 0.00 0.00 3.85
441 444 2.038557 GCTTCAGTCAACCTTACTCCCA 59.961 50.000 0.00 0.00 0.00 4.37
444 447 2.496070 TCAGTCAACCTTACTCCCATCG 59.504 50.000 0.00 0.00 0.00 3.84
445 448 1.207329 AGTCAACCTTACTCCCATCGC 59.793 52.381 0.00 0.00 0.00 4.58
446 449 1.066430 GTCAACCTTACTCCCATCGCA 60.066 52.381 0.00 0.00 0.00 5.10
447 450 1.207089 TCAACCTTACTCCCATCGCAG 59.793 52.381 0.00 0.00 0.00 5.18
449 452 0.824759 ACCTTACTCCCATCGCAGTC 59.175 55.000 0.00 0.00 0.00 3.51
450 453 1.115467 CCTTACTCCCATCGCAGTCT 58.885 55.000 0.00 0.00 0.00 3.24
451 454 1.067821 CCTTACTCCCATCGCAGTCTC 59.932 57.143 0.00 0.00 0.00 3.36
461 464 2.711978 TCGCAGTCTCTCTAGGCTTA 57.288 50.000 0.00 0.00 34.68 3.09
471 474 6.998673 AGTCTCTCTAGGCTTATCTCTTTCTC 59.001 42.308 0.00 0.00 32.20 2.87
530 537 7.530010 TTACAGTAGTAAAAGTACGCAGTAGG 58.470 38.462 0.00 0.00 39.50 3.18
531 538 7.362056 TTACAGTAGTAAAAGTACGCAGTAGGG 60.362 40.741 0.00 0.00 39.50 3.53
558 565 5.171476 ACTATATAATGTGGCGCATCTGAC 58.829 41.667 14.82 0.00 36.67 3.51
560 567 0.541392 TAATGTGGCGCATCTGACCT 59.459 50.000 14.82 0.00 36.67 3.85
561 568 0.745845 AATGTGGCGCATCTGACCTC 60.746 55.000 14.82 0.00 36.67 3.85
562 569 1.902765 ATGTGGCGCATCTGACCTCA 61.903 55.000 10.83 0.00 30.67 3.86
563 570 1.812922 GTGGCGCATCTGACCTCAG 60.813 63.158 10.83 0.00 45.08 3.35
564 571 2.202987 GGCGCATCTGACCTCAGG 60.203 66.667 10.83 0.00 43.91 3.86
565 572 2.202987 GCGCATCTGACCTCAGGG 60.203 66.667 0.30 0.00 43.91 4.45
566 573 2.725312 GCGCATCTGACCTCAGGGA 61.725 63.158 0.30 0.00 43.91 4.20
567 574 2.037620 GCGCATCTGACCTCAGGGAT 62.038 60.000 0.30 0.00 43.91 3.85
568 575 0.249784 CGCATCTGACCTCAGGGATG 60.250 60.000 0.00 0.00 43.91 3.51
569 576 0.534652 GCATCTGACCTCAGGGATGC 60.535 60.000 15.30 15.30 42.73 3.91
570 577 0.249784 CATCTGACCTCAGGGATGCG 60.250 60.000 0.00 0.00 43.91 4.73
571 578 2.037620 ATCTGACCTCAGGGATGCGC 62.038 60.000 0.00 0.00 43.91 6.09
572 579 2.685017 TGACCTCAGGGATGCGCT 60.685 61.111 9.73 0.00 36.25 5.92
573 580 2.107953 GACCTCAGGGATGCGCTC 59.892 66.667 9.73 3.37 36.25 5.03
574 581 3.781770 GACCTCAGGGATGCGCTCG 62.782 68.421 9.73 0.00 36.25 5.03
575 582 3.842923 CCTCAGGGATGCGCTCGT 61.843 66.667 9.73 0.00 33.58 4.18
576 583 2.584418 CTCAGGGATGCGCTCGTG 60.584 66.667 9.73 10.34 0.00 4.35
577 584 4.819761 TCAGGGATGCGCTCGTGC 62.820 66.667 9.73 0.00 0.00 5.34
587 594 4.987419 GCTCGTGCGTTTGACAAA 57.013 50.000 0.00 0.00 0.00 2.83
588 595 3.228085 GCTCGTGCGTTTGACAAAA 57.772 47.368 1.27 0.00 0.00 2.44
589 596 1.112459 GCTCGTGCGTTTGACAAAAG 58.888 50.000 9.22 9.22 0.00 2.27
622 629 2.962569 CCTTCGCCGTCTCACTCA 59.037 61.111 0.00 0.00 0.00 3.41
626 633 1.864711 CTTCGCCGTCTCACTCAAAAA 59.135 47.619 0.00 0.00 0.00 1.94
644 651 2.532250 AATCCACCAAGAATCCCCAC 57.468 50.000 0.00 0.00 0.00 4.61
648 655 1.633432 CCACCAAGAATCCCCACTGTA 59.367 52.381 0.00 0.00 0.00 2.74
653 660 4.292306 ACCAAGAATCCCCACTGTAGATTT 59.708 41.667 2.62 0.00 30.52 2.17
660 667 6.732896 ATCCCCACTGTAGATTTGTAGTAG 57.267 41.667 0.00 0.00 0.00 2.57
664 671 4.142227 CCACTGTAGATTTGTAGTAGCGGT 60.142 45.833 0.00 0.00 0.00 5.68
674 682 8.092687 AGATTTGTAGTAGCGGTTTTTCTTCTA 58.907 33.333 0.00 0.00 0.00 2.10
675 683 8.611654 ATTTGTAGTAGCGGTTTTTCTTCTAA 57.388 30.769 0.00 0.00 0.00 2.10
677 685 5.630680 TGTAGTAGCGGTTTTTCTTCTAACG 59.369 40.000 0.00 0.00 0.00 3.18
686 694 6.149633 GGTTTTTCTTCTAACGTGCATCATT 58.850 36.000 0.00 0.00 0.00 2.57
687 695 6.088085 GGTTTTTCTTCTAACGTGCATCATTG 59.912 38.462 0.00 0.00 0.00 2.82
694 702 4.994217 TCTAACGTGCATCATTGTTGAAGA 59.006 37.500 0.00 0.00 34.96 2.87
698 706 4.153986 CGTGCATCATTGTTGAAGACTTC 58.846 43.478 8.34 8.34 34.96 3.01
702 710 4.153117 GCATCATTGTTGAAGACTTCGAGT 59.847 41.667 10.56 0.00 34.96 4.18
704 712 6.670927 GCATCATTGTTGAAGACTTCGAGTAC 60.671 42.308 10.56 6.66 34.96 2.73
715 723 6.287589 AGACTTCGAGTACCATTTGAGAAT 57.712 37.500 0.00 0.00 0.00 2.40
728 736 1.817357 TGAGAATGCCTTGTCAGCAG 58.183 50.000 0.00 0.00 44.90 4.24
735 743 1.610038 TGCCTTGTCAGCAGTGATTTG 59.390 47.619 0.00 0.00 34.69 2.32
742 750 3.578282 TGTCAGCAGTGATTTGGTCTAGA 59.422 43.478 0.00 0.00 34.36 2.43
756 764 2.703007 GGTCTAGATCCTTGCTGTCCAT 59.297 50.000 0.00 0.00 0.00 3.41
757 765 3.135530 GGTCTAGATCCTTGCTGTCCATT 59.864 47.826 0.00 0.00 0.00 3.16
759 767 4.033009 TCTAGATCCTTGCTGTCCATTCA 58.967 43.478 0.00 0.00 0.00 2.57
760 768 3.947612 AGATCCTTGCTGTCCATTCAT 57.052 42.857 0.00 0.00 0.00 2.57
761 769 4.246712 AGATCCTTGCTGTCCATTCATT 57.753 40.909 0.00 0.00 0.00 2.57
763 771 5.950023 AGATCCTTGCTGTCCATTCATTAT 58.050 37.500 0.00 0.00 0.00 1.28
764 772 7.083062 AGATCCTTGCTGTCCATTCATTATA 57.917 36.000 0.00 0.00 0.00 0.98
765 773 6.939163 AGATCCTTGCTGTCCATTCATTATAC 59.061 38.462 0.00 0.00 0.00 1.47
766 774 5.056480 TCCTTGCTGTCCATTCATTATACG 58.944 41.667 0.00 0.00 0.00 3.06
768 776 4.071961 TGCTGTCCATTCATTATACGCT 57.928 40.909 0.00 0.00 0.00 5.07
770 778 4.058124 GCTGTCCATTCATTATACGCTGA 58.942 43.478 0.00 0.00 0.00 4.26
771 779 4.511454 GCTGTCCATTCATTATACGCTGAA 59.489 41.667 0.00 0.00 35.95 3.02
772 780 5.007626 GCTGTCCATTCATTATACGCTGAAA 59.992 40.000 0.00 0.00 35.20 2.69
773 781 6.603237 TGTCCATTCATTATACGCTGAAAG 57.397 37.500 0.00 0.00 35.20 2.62
774 782 6.345298 TGTCCATTCATTATACGCTGAAAGA 58.655 36.000 0.00 0.00 35.20 2.52
775 783 6.992123 TGTCCATTCATTATACGCTGAAAGAT 59.008 34.615 0.00 0.00 35.20 2.40
776 784 7.041848 TGTCCATTCATTATACGCTGAAAGATG 60.042 37.037 0.00 0.00 35.20 2.90
777 785 7.171508 GTCCATTCATTATACGCTGAAAGATGA 59.828 37.037 0.00 0.00 35.20 2.92
778 786 7.714813 TCCATTCATTATACGCTGAAAGATGAA 59.285 33.333 0.00 0.00 35.20 2.57
779 787 8.509690 CCATTCATTATACGCTGAAAGATGAAT 58.490 33.333 0.00 0.00 41.07 2.57
780 788 9.539139 CATTCATTATACGCTGAAAGATGAATC 57.461 33.333 5.87 0.00 39.43 2.52
781 789 8.893219 TTCATTATACGCTGAAAGATGAATCT 57.107 30.769 0.00 0.00 39.22 2.40
782 790 8.526218 TCATTATACGCTGAAAGATGAATCTC 57.474 34.615 0.00 0.00 35.76 2.75
783 791 6.993175 TTATACGCTGAAAGATGAATCTCG 57.007 37.500 0.00 0.00 35.76 4.04
784 792 3.510388 ACGCTGAAAGATGAATCTCGA 57.490 42.857 5.63 0.00 35.76 4.04
785 793 3.182967 ACGCTGAAAGATGAATCTCGAC 58.817 45.455 5.63 0.00 35.76 4.20
786 794 3.119316 ACGCTGAAAGATGAATCTCGACT 60.119 43.478 5.63 0.00 35.76 4.18
787 795 3.862267 CGCTGAAAGATGAATCTCGACTT 59.138 43.478 0.00 0.00 35.76 3.01
788 796 4.328440 CGCTGAAAGATGAATCTCGACTTT 59.672 41.667 0.00 0.00 35.76 2.66
789 797 5.558307 GCTGAAAGATGAATCTCGACTTTG 58.442 41.667 0.00 0.00 35.76 2.77
790 798 5.349817 GCTGAAAGATGAATCTCGACTTTGA 59.650 40.000 0.00 0.00 35.76 2.69
791 799 6.671879 GCTGAAAGATGAATCTCGACTTTGAC 60.672 42.308 0.00 0.00 35.76 3.18
792 800 6.223120 TGAAAGATGAATCTCGACTTTGACA 58.777 36.000 0.00 0.00 35.76 3.58
793 801 6.875726 TGAAAGATGAATCTCGACTTTGACAT 59.124 34.615 0.00 0.00 35.76 3.06
794 802 6.900568 AAGATGAATCTCGACTTTGACATC 57.099 37.500 0.00 0.00 35.76 3.06
795 803 5.355596 AGATGAATCTCGACTTTGACATCC 58.644 41.667 0.00 0.00 35.13 3.51
796 804 4.808414 TGAATCTCGACTTTGACATCCT 57.192 40.909 0.00 0.00 0.00 3.24
797 805 5.914898 TGAATCTCGACTTTGACATCCTA 57.085 39.130 0.00 0.00 0.00 2.94
798 806 5.651530 TGAATCTCGACTTTGACATCCTAC 58.348 41.667 0.00 0.00 0.00 3.18
799 807 5.185056 TGAATCTCGACTTTGACATCCTACA 59.815 40.000 0.00 0.00 0.00 2.74
800 808 5.860941 ATCTCGACTTTGACATCCTACAT 57.139 39.130 0.00 0.00 0.00 2.29
801 809 5.661056 TCTCGACTTTGACATCCTACATT 57.339 39.130 0.00 0.00 0.00 2.71
802 810 6.037786 TCTCGACTTTGACATCCTACATTT 57.962 37.500 0.00 0.00 0.00 2.32
803 811 6.100004 TCTCGACTTTGACATCCTACATTTC 58.900 40.000 0.00 0.00 0.00 2.17
804 812 5.789521 TCGACTTTGACATCCTACATTTCA 58.210 37.500 0.00 0.00 0.00 2.69
805 813 6.406370 TCGACTTTGACATCCTACATTTCAT 58.594 36.000 0.00 0.00 0.00 2.57
806 814 7.552459 TCGACTTTGACATCCTACATTTCATA 58.448 34.615 0.00 0.00 0.00 2.15
807 815 8.204160 TCGACTTTGACATCCTACATTTCATAT 58.796 33.333 0.00 0.00 0.00 1.78
808 816 8.830580 CGACTTTGACATCCTACATTTCATATT 58.169 33.333 0.00 0.00 0.00 1.28
926 934 1.374758 GAGAACCGTGTGCCTCAGG 60.375 63.158 0.00 0.00 0.00 3.86
961 969 8.565896 TCAAATCATCCTTGTATATGTATGCC 57.434 34.615 0.00 0.00 0.00 4.40
991 999 4.966787 GGGGGCTGGCACACGAAA 62.967 66.667 5.62 0.00 0.00 3.46
1004 1012 1.006832 CACGAAAGAGGCGTAATGGG 58.993 55.000 0.00 0.00 40.44 4.00
1009 1017 2.256117 AAGAGGCGTAATGGGTATGC 57.744 50.000 0.00 0.00 43.08 3.14
1095 1103 2.285743 GGGAAGCCACTCTCCCCT 60.286 66.667 0.00 0.00 36.43 4.79
1101 1109 1.997874 GCCACTCTCCCCTGGTGAT 60.998 63.158 0.00 0.00 33.32 3.06
1102 1110 1.977293 GCCACTCTCCCCTGGTGATC 61.977 65.000 0.00 0.00 33.32 2.92
1104 1112 0.829333 CACTCTCCCCTGGTGATCTG 59.171 60.000 0.00 0.00 33.32 2.90
1119 1127 1.686052 GATCTGCTCGTCTCCAAGGAT 59.314 52.381 0.00 0.00 0.00 3.24
1311 1319 1.251527 ACCTCGTGCTGTCGGATTCT 61.252 55.000 0.00 0.00 0.00 2.40
1319 1327 0.807667 CTGTCGGATTCTGAAGGCCG 60.808 60.000 21.47 21.47 44.83 6.13
1322 1330 1.524621 CGGATTCTGAAGGCCGCAT 60.525 57.895 17.61 0.00 37.08 4.73
1413 1421 1.192803 GGAACTTGGTCCTCCGGTCT 61.193 60.000 0.00 0.00 34.56 3.85
1606 1617 1.951895 GCATGCAGATGGTCACTTGGA 60.952 52.381 14.21 0.00 0.00 3.53
1674 1685 2.285069 TCCGGTGGCACATACCCT 60.285 61.111 20.82 0.00 44.52 4.34
1707 1718 0.245539 CCGTCGTGTACCAGACCATT 59.754 55.000 10.87 0.00 34.10 3.16
1749 1760 4.375272 TCTACCTAATGTACTCGGTCTCG 58.625 47.826 0.00 0.00 37.82 4.04
1869 1880 3.476419 CCCTCCGGCGGTTATGGT 61.476 66.667 27.32 0.00 0.00 3.55
1995 2006 4.069232 TGCCGGAGAGTGGAAGCG 62.069 66.667 5.05 0.00 0.00 4.68
2001 2012 0.739112 GGAGAGTGGAAGCGCTGAAG 60.739 60.000 12.58 0.00 0.00 3.02
2365 2378 6.992664 AATCATCCAGCAGAGATAAGTACT 57.007 37.500 0.00 0.00 0.00 2.73
2366 2379 6.588719 ATCATCCAGCAGAGATAAGTACTC 57.411 41.667 0.00 0.00 34.95 2.59
2367 2380 4.830046 TCATCCAGCAGAGATAAGTACTCC 59.170 45.833 0.00 0.00 35.27 3.85
2368 2381 3.567397 TCCAGCAGAGATAAGTACTCCC 58.433 50.000 0.00 0.00 35.27 4.30
2369 2382 3.205507 TCCAGCAGAGATAAGTACTCCCT 59.794 47.826 0.00 0.00 35.27 4.20
2371 2384 3.572255 CAGCAGAGATAAGTACTCCCTCC 59.428 52.174 0.00 0.00 35.27 4.30
2376 2389 5.826737 CAGAGATAAGTACTCCCTCCGTAAA 59.173 44.000 0.00 0.00 35.27 2.01
2379 2392 6.430007 AGATAAGTACTCCCTCCGTAAAGAA 58.570 40.000 0.00 0.00 0.00 2.52
2382 2395 8.773033 ATAAGTACTCCCTCCGTAAAGAAATA 57.227 34.615 0.00 0.00 0.00 1.40
2384 2397 8.773033 AAGTACTCCCTCCGTAAAGAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
2386 2399 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
2389 2402 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2395 2408 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
2396 2409 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
2409 2422 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2479 2492 8.649973 AACGCTCTTATATTTTTCTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
2480 2493 7.210873 ACGCTCTTATATTTTTCTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
2508 2521 9.191995 GTACAAAACAGGGAAATTTTAGACATG 57.808 33.333 0.00 0.00 0.00 3.21
2891 2939 4.523943 AGCAATTTAGTGAAGATTGTGCCA 59.476 37.500 0.00 0.00 34.19 4.92
2961 3009 8.690884 TCTGGAAATGTGAGTAGAAAGATAGAG 58.309 37.037 0.00 0.00 0.00 2.43
3028 3076 6.942576 AGTTCTAATCAGTTAAGTGCCAATGT 59.057 34.615 5.35 0.00 0.00 2.71
3089 3140 5.352284 AGAAACTGATGCTACGATACTTGG 58.648 41.667 0.00 0.00 0.00 3.61
3142 3193 9.594478 AATTCAGATTTTCCGTTTGTTAGTTTT 57.406 25.926 0.00 0.00 0.00 2.43
3162 3213 2.441410 TGAAGATATTGTGGCCGCAAA 58.559 42.857 33.81 22.57 31.63 3.68
3267 3318 4.386711 GGCAAGTAGGGTACAATATGTCC 58.613 47.826 0.00 0.00 0.00 4.02
3753 3814 9.260002 ACAAAATTCTCAATGTTGACCATAAAC 57.740 29.630 6.21 0.00 38.17 2.01
3754 3815 9.480053 CAAAATTCTCAATGTTGACCATAAACT 57.520 29.630 0.00 0.00 38.17 2.66
3859 3923 6.070656 ACAAGAAAAGATGTCCTTGATTGGA 58.929 36.000 0.00 0.00 39.28 3.53
4088 4162 2.498885 TCATGTGCTGAGCAGTGTCTAT 59.501 45.455 7.71 0.00 40.08 1.98
4211 4286 6.016024 TGTTCTCAATGCTAGTGAAATGCTTT 60.016 34.615 0.00 0.00 0.00 3.51
4294 4373 8.208224 TGTTAAAAAGTGAGGACAGTTATGAGA 58.792 33.333 0.00 0.00 38.53 3.27
4298 4377 8.697507 AAAAGTGAGGACAGTTATGAGAAAAT 57.302 30.769 0.00 0.00 38.53 1.82
4302 4381 8.571336 AGTGAGGACAGTTATGAGAAAATTTTG 58.429 33.333 8.47 0.00 0.00 2.44
4495 4574 1.551452 TTAAATCCCCCAAAGCCACG 58.449 50.000 0.00 0.00 0.00 4.94
4504 4583 1.089920 CCAAAGCCACGGATCTTCAG 58.910 55.000 0.00 0.00 0.00 3.02
4841 4933 5.841957 AAGTATCATGGAATGCTTGAACC 57.158 39.130 0.00 0.00 46.21 3.62
4937 5030 1.275856 TGGAAATGCAATGGAACTGGC 59.724 47.619 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.140652 CTCCAGGATCCAGAAGCTTCC 59.859 57.143 22.81 7.34 0.00 3.46
1 2 1.474855 GCTCCAGGATCCAGAAGCTTC 60.475 57.143 19.11 19.11 0.00 3.86
2 3 0.545646 GCTCCAGGATCCAGAAGCTT 59.454 55.000 15.82 0.00 0.00 3.74
3 4 1.344191 GGCTCCAGGATCCAGAAGCT 61.344 60.000 23.40 0.00 0.00 3.74
4 5 1.148048 GGCTCCAGGATCCAGAAGC 59.852 63.158 15.82 17.69 0.00 3.86
5 6 0.469070 CTGGCTCCAGGATCCAGAAG 59.531 60.000 29.30 7.96 45.57 2.85
6 7 1.630126 GCTGGCTCCAGGATCCAGAA 61.630 60.000 34.93 5.67 45.57 3.02
7 8 2.068821 GCTGGCTCCAGGATCCAGA 61.069 63.158 34.93 9.45 45.57 3.86
8 9 2.509916 GCTGGCTCCAGGATCCAG 59.490 66.667 28.93 28.93 45.51 3.86
9 10 3.473647 CGCTGGCTCCAGGATCCA 61.474 66.667 15.82 11.75 43.77 3.41
10 11 4.925861 GCGCTGGCTCCAGGATCC 62.926 72.222 16.89 2.48 43.77 3.36
11 12 4.925861 GGCGCTGGCTCCAGGATC 62.926 72.222 16.89 0.61 43.77 3.36
57 58 2.809601 CTTCCGGCGAACCTCACG 60.810 66.667 9.30 0.00 0.00 4.35
58 59 3.119096 GCTTCCGGCGAACCTCAC 61.119 66.667 9.30 0.00 0.00 3.51
59 60 4.388499 GGCTTCCGGCGAACCTCA 62.388 66.667 9.30 0.00 42.94 3.86
60 61 2.630592 CTAGGCTTCCGGCGAACCTC 62.631 65.000 9.30 0.00 42.94 3.85
61 62 2.682494 TAGGCTTCCGGCGAACCT 60.682 61.111 9.30 11.76 42.94 3.50
62 63 2.202892 CTAGGCTTCCGGCGAACC 60.203 66.667 9.30 3.64 42.94 3.62
63 64 2.890961 GCTAGGCTTCCGGCGAAC 60.891 66.667 9.30 0.00 42.94 3.95
64 65 4.157120 GGCTAGGCTTCCGGCGAA 62.157 66.667 9.30 0.00 42.94 4.70
67 68 2.911221 ATTTGGGCTAGGCTTCCGGC 62.911 60.000 16.80 0.00 40.90 6.13
68 69 1.103398 CATTTGGGCTAGGCTTCCGG 61.103 60.000 16.80 0.00 0.00 5.14
69 70 0.394352 ACATTTGGGCTAGGCTTCCG 60.394 55.000 16.80 4.20 0.00 4.30
70 71 1.340991 TGACATTTGGGCTAGGCTTCC 60.341 52.381 16.80 0.00 0.00 3.46
71 72 2.019984 CTGACATTTGGGCTAGGCTTC 58.980 52.381 16.80 0.56 0.00 3.86
72 73 1.635487 TCTGACATTTGGGCTAGGCTT 59.365 47.619 16.80 0.00 0.00 4.35
73 74 1.289160 TCTGACATTTGGGCTAGGCT 58.711 50.000 16.80 0.00 0.00 4.58
74 75 2.225467 GATCTGACATTTGGGCTAGGC 58.775 52.381 8.00 8.00 0.00 3.93
75 76 2.808202 CGGATCTGACATTTGGGCTAGG 60.808 54.545 0.00 0.00 0.00 3.02
76 77 2.103094 TCGGATCTGACATTTGGGCTAG 59.897 50.000 0.00 0.00 0.00 3.42
77 78 2.103094 CTCGGATCTGACATTTGGGCTA 59.897 50.000 0.00 0.00 0.00 3.93
78 79 0.911769 TCGGATCTGACATTTGGGCT 59.088 50.000 0.00 0.00 0.00 5.19
79 80 1.303309 CTCGGATCTGACATTTGGGC 58.697 55.000 0.00 0.00 0.00 5.36
80 81 2.679837 CAACTCGGATCTGACATTTGGG 59.320 50.000 0.00 0.00 0.00 4.12
81 82 2.679837 CCAACTCGGATCTGACATTTGG 59.320 50.000 15.63 15.63 36.56 3.28
82 83 3.599343 TCCAACTCGGATCTGACATTTG 58.401 45.455 0.00 4.70 39.64 2.32
83 84 3.981071 TCCAACTCGGATCTGACATTT 57.019 42.857 0.00 0.00 39.64 2.32
84 85 3.981071 TTCCAACTCGGATCTGACATT 57.019 42.857 0.00 0.00 45.80 2.71
85 86 4.494091 AATTCCAACTCGGATCTGACAT 57.506 40.909 0.00 0.00 45.80 3.06
86 87 3.981071 AATTCCAACTCGGATCTGACA 57.019 42.857 0.00 0.00 45.80 3.58
87 88 4.142600 CCAAAATTCCAACTCGGATCTGAC 60.143 45.833 0.00 0.00 45.80 3.51
88 89 4.009675 CCAAAATTCCAACTCGGATCTGA 58.990 43.478 3.71 3.71 45.80 3.27
89 90 4.009675 TCCAAAATTCCAACTCGGATCTG 58.990 43.478 0.00 0.00 45.80 2.90
90 91 4.301072 TCCAAAATTCCAACTCGGATCT 57.699 40.909 0.00 0.00 45.80 2.75
91 92 5.582689 AATCCAAAATTCCAACTCGGATC 57.417 39.130 0.00 0.00 45.80 3.36
92 93 6.358974 AAAATCCAAAATTCCAACTCGGAT 57.641 33.333 0.00 0.00 45.80 4.18
93 94 5.279256 GGAAAATCCAAAATTCCAACTCGGA 60.279 40.000 0.00 0.00 41.80 4.55
94 95 4.929211 GGAAAATCCAAAATTCCAACTCGG 59.071 41.667 0.00 0.00 41.80 4.63
108 109 6.902771 TCGAATTTTACCTTGGAAAATCCA 57.097 33.333 0.00 0.00 46.61 3.41
109 110 7.870954 ACTTTCGAATTTTACCTTGGAAAATCC 59.129 33.333 0.00 0.00 35.86 3.01
110 111 8.812147 ACTTTCGAATTTTACCTTGGAAAATC 57.188 30.769 0.00 0.00 35.86 2.17
113 114 9.902196 GAATACTTTCGAATTTTACCTTGGAAA 57.098 29.630 0.00 0.00 32.03 3.13
114 115 9.069082 TGAATACTTTCGAATTTTACCTTGGAA 57.931 29.630 0.00 0.00 34.39 3.53
115 116 8.624367 TGAATACTTTCGAATTTTACCTTGGA 57.376 30.769 0.00 0.00 34.39 3.53
116 117 9.124807 GTTGAATACTTTCGAATTTTACCTTGG 57.875 33.333 0.00 0.00 34.39 3.61
117 118 9.893305 AGTTGAATACTTTCGAATTTTACCTTG 57.107 29.630 0.00 0.00 31.29 3.61
119 120 9.280174 TGAGTTGAATACTTTCGAATTTTACCT 57.720 29.630 0.00 0.00 37.17 3.08
120 121 9.543018 CTGAGTTGAATACTTTCGAATTTTACC 57.457 33.333 0.00 0.00 37.17 2.85
126 127 9.442047 AGAATTCTGAGTTGAATACTTTCGAAT 57.558 29.630 7.30 0.00 37.17 3.34
127 128 8.712363 CAGAATTCTGAGTTGAATACTTTCGAA 58.288 33.333 28.13 0.00 46.59 3.71
128 129 7.872993 ACAGAATTCTGAGTTGAATACTTTCGA 59.127 33.333 36.15 0.00 46.59 3.71
129 130 7.954248 CACAGAATTCTGAGTTGAATACTTTCG 59.046 37.037 36.15 8.88 46.59 3.46
130 131 8.778358 ACACAGAATTCTGAGTTGAATACTTTC 58.222 33.333 36.15 0.00 43.51 2.62
131 132 8.682936 ACACAGAATTCTGAGTTGAATACTTT 57.317 30.769 36.15 10.94 43.51 2.66
132 133 7.116948 CGACACAGAATTCTGAGTTGAATACTT 59.883 37.037 33.15 14.27 45.74 2.24
133 134 6.587990 CGACACAGAATTCTGAGTTGAATACT 59.412 38.462 33.15 14.84 45.74 2.12
134 135 6.670927 GCGACACAGAATTCTGAGTTGAATAC 60.671 42.308 37.30 24.15 45.74 1.89
135 136 5.348724 GCGACACAGAATTCTGAGTTGAATA 59.651 40.000 37.30 0.00 45.74 1.75
136 137 4.153117 GCGACACAGAATTCTGAGTTGAAT 59.847 41.667 37.30 19.74 45.74 2.57
137 138 3.494626 GCGACACAGAATTCTGAGTTGAA 59.505 43.478 37.30 0.00 45.74 2.69
138 139 3.059884 GCGACACAGAATTCTGAGTTGA 58.940 45.455 37.30 0.00 45.74 3.18
139 140 2.159920 CGCGACACAGAATTCTGAGTTG 60.160 50.000 36.15 34.15 45.42 3.16
140 141 2.061773 CGCGACACAGAATTCTGAGTT 58.938 47.619 36.15 21.29 45.42 3.01
142 143 1.982612 TCGCGACACAGAATTCTGAG 58.017 50.000 36.15 30.67 46.59 3.35
143 144 2.058798 GTTCGCGACACAGAATTCTGA 58.941 47.619 36.15 13.71 46.59 3.27
145 146 1.270094 TGGTTCGCGACACAGAATTCT 60.270 47.619 9.15 0.88 0.00 2.40
146 147 1.126846 CTGGTTCGCGACACAGAATTC 59.873 52.381 26.55 0.00 31.87 2.17
147 148 1.148310 CTGGTTCGCGACACAGAATT 58.852 50.000 26.55 0.00 31.87 2.17
148 149 1.291877 GCTGGTTCGCGACACAGAAT 61.292 55.000 31.79 0.00 31.87 2.40
149 150 1.954146 GCTGGTTCGCGACACAGAA 60.954 57.895 31.79 7.57 31.87 3.02
150 151 2.355837 GCTGGTTCGCGACACAGA 60.356 61.111 31.79 8.30 31.87 3.41
151 152 2.356313 AGCTGGTTCGCGACACAG 60.356 61.111 26.39 26.39 34.40 3.66
152 153 2.355837 GAGCTGGTTCGCGACACA 60.356 61.111 9.15 10.31 34.40 3.72
153 154 2.355837 TGAGCTGGTTCGCGACAC 60.356 61.111 9.15 10.65 34.40 3.67
154 155 2.049156 CTGAGCTGGTTCGCGACA 60.049 61.111 9.15 3.19 34.40 4.35
155 156 1.372997 TTCTGAGCTGGTTCGCGAC 60.373 57.895 9.15 3.93 34.40 5.19
156 157 1.372997 GTTCTGAGCTGGTTCGCGA 60.373 57.895 3.71 3.71 34.40 5.87
157 158 0.946221 AAGTTCTGAGCTGGTTCGCG 60.946 55.000 0.00 0.00 34.40 5.87
158 159 0.514691 CAAGTTCTGAGCTGGTTCGC 59.485 55.000 0.00 0.00 0.00 4.70
159 160 1.151668 CCAAGTTCTGAGCTGGTTCG 58.848 55.000 0.00 0.00 0.00 3.95
160 161 2.262423 ACCAAGTTCTGAGCTGGTTC 57.738 50.000 0.00 0.00 0.00 3.62
161 162 3.857157 TTACCAAGTTCTGAGCTGGTT 57.143 42.857 16.22 0.00 0.00 3.67
162 163 3.857157 TTTACCAAGTTCTGAGCTGGT 57.143 42.857 15.63 15.63 0.00 4.00
163 164 4.761739 TGATTTTACCAAGTTCTGAGCTGG 59.238 41.667 0.00 2.08 0.00 4.85
164 165 5.947228 TGATTTTACCAAGTTCTGAGCTG 57.053 39.130 0.00 0.00 0.00 4.24
165 166 6.547510 AGTTTGATTTTACCAAGTTCTGAGCT 59.452 34.615 0.00 0.00 0.00 4.09
166 167 6.638468 CAGTTTGATTTTACCAAGTTCTGAGC 59.362 38.462 0.00 0.00 0.00 4.26
167 168 6.638468 GCAGTTTGATTTTACCAAGTTCTGAG 59.362 38.462 0.00 0.00 0.00 3.35
168 169 6.096141 TGCAGTTTGATTTTACCAAGTTCTGA 59.904 34.615 0.00 0.00 0.00 3.27
169 170 6.272318 TGCAGTTTGATTTTACCAAGTTCTG 58.728 36.000 0.00 0.00 0.00 3.02
170 171 6.463995 TGCAGTTTGATTTTACCAAGTTCT 57.536 33.333 0.00 0.00 0.00 3.01
171 172 6.978080 TCTTGCAGTTTGATTTTACCAAGTTC 59.022 34.615 0.00 0.00 32.52 3.01
172 173 6.872920 TCTTGCAGTTTGATTTTACCAAGTT 58.127 32.000 0.00 0.00 32.52 2.66
173 174 6.461509 CCTCTTGCAGTTTGATTTTACCAAGT 60.462 38.462 0.00 0.00 32.52 3.16
174 175 5.922544 CCTCTTGCAGTTTGATTTTACCAAG 59.077 40.000 0.00 0.00 0.00 3.61
175 176 5.221422 CCCTCTTGCAGTTTGATTTTACCAA 60.221 40.000 0.00 0.00 0.00 3.67
176 177 4.280677 CCCTCTTGCAGTTTGATTTTACCA 59.719 41.667 0.00 0.00 0.00 3.25
177 178 4.321974 CCCCTCTTGCAGTTTGATTTTACC 60.322 45.833 0.00 0.00 0.00 2.85
178 179 4.321974 CCCCCTCTTGCAGTTTGATTTTAC 60.322 45.833 0.00 0.00 0.00 2.01
179 180 3.831911 CCCCCTCTTGCAGTTTGATTTTA 59.168 43.478 0.00 0.00 0.00 1.52
180 181 2.634453 CCCCCTCTTGCAGTTTGATTTT 59.366 45.455 0.00 0.00 0.00 1.82
181 182 2.158325 TCCCCCTCTTGCAGTTTGATTT 60.158 45.455 0.00 0.00 0.00 2.17
182 183 1.428912 TCCCCCTCTTGCAGTTTGATT 59.571 47.619 0.00 0.00 0.00 2.57
183 184 1.075601 TCCCCCTCTTGCAGTTTGAT 58.924 50.000 0.00 0.00 0.00 2.57
184 185 0.850100 TTCCCCCTCTTGCAGTTTGA 59.150 50.000 0.00 0.00 0.00 2.69
185 186 1.703411 TTTCCCCCTCTTGCAGTTTG 58.297 50.000 0.00 0.00 0.00 2.93
186 187 2.470057 TTTTCCCCCTCTTGCAGTTT 57.530 45.000 0.00 0.00 0.00 2.66
187 188 2.110721 AGATTTTCCCCCTCTTGCAGTT 59.889 45.455 0.00 0.00 0.00 3.16
188 189 1.713078 AGATTTTCCCCCTCTTGCAGT 59.287 47.619 0.00 0.00 0.00 4.40
189 190 2.373224 GAGATTTTCCCCCTCTTGCAG 58.627 52.381 0.00 0.00 0.00 4.41
190 191 1.340017 CGAGATTTTCCCCCTCTTGCA 60.340 52.381 0.00 0.00 0.00 4.08
191 192 1.065418 TCGAGATTTTCCCCCTCTTGC 60.065 52.381 0.00 0.00 0.00 4.01
192 193 3.350219 TTCGAGATTTTCCCCCTCTTG 57.650 47.619 0.00 0.00 0.00 3.02
193 194 4.527944 GAATTCGAGATTTTCCCCCTCTT 58.472 43.478 0.00 0.00 0.00 2.85
194 195 3.432326 CGAATTCGAGATTTTCCCCCTCT 60.432 47.826 23.29 0.00 43.02 3.69
195 196 2.872858 CGAATTCGAGATTTTCCCCCTC 59.127 50.000 23.29 0.00 43.02 4.30
196 197 2.504175 TCGAATTCGAGATTTTCCCCCT 59.496 45.455 25.96 0.00 44.22 4.79
197 198 2.914059 TCGAATTCGAGATTTTCCCCC 58.086 47.619 25.96 0.00 44.22 5.40
209 210 4.853268 TCTCATCTCACATCTCGAATTCG 58.147 43.478 21.78 21.78 41.45 3.34
210 211 5.221880 CCTCTCATCTCACATCTCGAATTC 58.778 45.833 0.00 0.00 0.00 2.17
211 212 4.501229 GCCTCTCATCTCACATCTCGAATT 60.501 45.833 0.00 0.00 0.00 2.17
212 213 3.005684 GCCTCTCATCTCACATCTCGAAT 59.994 47.826 0.00 0.00 0.00 3.34
213 214 2.360483 GCCTCTCATCTCACATCTCGAA 59.640 50.000 0.00 0.00 0.00 3.71
214 215 1.952990 GCCTCTCATCTCACATCTCGA 59.047 52.381 0.00 0.00 0.00 4.04
215 216 1.334870 CGCCTCTCATCTCACATCTCG 60.335 57.143 0.00 0.00 0.00 4.04
216 217 1.000385 CCGCCTCTCATCTCACATCTC 60.000 57.143 0.00 0.00 0.00 2.75
217 218 1.039068 CCGCCTCTCATCTCACATCT 58.961 55.000 0.00 0.00 0.00 2.90
218 219 0.033228 CCCGCCTCTCATCTCACATC 59.967 60.000 0.00 0.00 0.00 3.06
219 220 1.406065 CCCCGCCTCTCATCTCACAT 61.406 60.000 0.00 0.00 0.00 3.21
220 221 2.060383 CCCCGCCTCTCATCTCACA 61.060 63.158 0.00 0.00 0.00 3.58
221 222 1.330655 TTCCCCGCCTCTCATCTCAC 61.331 60.000 0.00 0.00 0.00 3.51
222 223 1.001631 TTCCCCGCCTCTCATCTCA 59.998 57.895 0.00 0.00 0.00 3.27
223 224 0.757188 TCTTCCCCGCCTCTCATCTC 60.757 60.000 0.00 0.00 0.00 2.75
224 225 0.325671 TTCTTCCCCGCCTCTCATCT 60.326 55.000 0.00 0.00 0.00 2.90
225 226 0.105778 CTTCTTCCCCGCCTCTCATC 59.894 60.000 0.00 0.00 0.00 2.92
226 227 0.325671 TCTTCTTCCCCGCCTCTCAT 60.326 55.000 0.00 0.00 0.00 2.90
227 228 0.325671 ATCTTCTTCCCCGCCTCTCA 60.326 55.000 0.00 0.00 0.00 3.27
228 229 0.105778 CATCTTCTTCCCCGCCTCTC 59.894 60.000 0.00 0.00 0.00 3.20
229 230 1.341156 CCATCTTCTTCCCCGCCTCT 61.341 60.000 0.00 0.00 0.00 3.69
230 231 1.147153 CCATCTTCTTCCCCGCCTC 59.853 63.158 0.00 0.00 0.00 4.70
231 232 1.208165 AACCATCTTCTTCCCCGCCT 61.208 55.000 0.00 0.00 0.00 5.52
232 233 0.323451 AAACCATCTTCTTCCCCGCC 60.323 55.000 0.00 0.00 0.00 6.13
233 234 1.545841 AAAACCATCTTCTTCCCCGC 58.454 50.000 0.00 0.00 0.00 6.13
234 235 4.781934 AGATAAAACCATCTTCTTCCCCG 58.218 43.478 0.00 0.00 30.93 5.73
242 243 7.721399 AGACTTGTGTGAAGATAAAACCATCTT 59.279 33.333 0.00 0.00 45.75 2.40
243 244 7.173907 CAGACTTGTGTGAAGATAAAACCATCT 59.826 37.037 0.00 0.00 36.83 2.90
244 245 7.041098 ACAGACTTGTGTGAAGATAAAACCATC 60.041 37.037 4.91 0.00 35.83 3.51
245 246 6.772716 ACAGACTTGTGTGAAGATAAAACCAT 59.227 34.615 4.91 0.00 35.83 3.55
246 247 6.119536 ACAGACTTGTGTGAAGATAAAACCA 58.880 36.000 4.91 0.00 35.83 3.67
247 248 6.293462 GGACAGACTTGTGTGAAGATAAAACC 60.293 42.308 4.91 0.00 37.76 3.27
248 249 6.483640 AGGACAGACTTGTGTGAAGATAAAAC 59.516 38.462 4.91 0.00 37.76 2.43
249 250 6.591935 AGGACAGACTTGTGTGAAGATAAAA 58.408 36.000 4.91 0.00 37.76 1.52
250 251 6.174720 AGGACAGACTTGTGTGAAGATAAA 57.825 37.500 4.91 0.00 37.76 1.40
251 252 5.808366 AGGACAGACTTGTGTGAAGATAA 57.192 39.130 4.91 0.00 37.76 1.75
252 253 5.279506 GGAAGGACAGACTTGTGTGAAGATA 60.280 44.000 4.91 0.00 37.76 1.98
253 254 4.503991 GGAAGGACAGACTTGTGTGAAGAT 60.504 45.833 4.91 0.00 37.76 2.40
254 255 3.181465 GGAAGGACAGACTTGTGTGAAGA 60.181 47.826 4.91 0.00 37.76 2.87
255 256 3.134458 GGAAGGACAGACTTGTGTGAAG 58.866 50.000 4.91 0.00 37.76 3.02
256 257 2.503765 TGGAAGGACAGACTTGTGTGAA 59.496 45.455 4.91 0.00 37.76 3.18
257 258 2.115427 TGGAAGGACAGACTTGTGTGA 58.885 47.619 4.91 0.00 37.76 3.58
258 259 2.620251 TGGAAGGACAGACTTGTGTG 57.380 50.000 0.00 0.00 37.76 3.82
259 260 2.505819 ACTTGGAAGGACAGACTTGTGT 59.494 45.455 0.00 0.00 37.76 3.72
260 261 3.199880 ACTTGGAAGGACAGACTTGTG 57.800 47.619 0.00 0.00 37.76 3.33
261 262 3.933861 AACTTGGAAGGACAGACTTGT 57.066 42.857 0.00 0.00 41.18 3.16
262 263 7.824289 TCATATAAACTTGGAAGGACAGACTTG 59.176 37.037 0.00 0.00 0.00 3.16
263 264 7.824779 GTCATATAAACTTGGAAGGACAGACTT 59.175 37.037 0.00 0.00 0.00 3.01
264 265 7.181125 AGTCATATAAACTTGGAAGGACAGACT 59.819 37.037 0.00 0.00 0.00 3.24
265 266 7.278868 CAGTCATATAAACTTGGAAGGACAGAC 59.721 40.741 0.00 0.00 0.00 3.51
266 267 7.331026 CAGTCATATAAACTTGGAAGGACAGA 58.669 38.462 0.00 0.00 0.00 3.41
267 268 6.037610 GCAGTCATATAAACTTGGAAGGACAG 59.962 42.308 0.00 0.00 0.00 3.51
268 269 5.880332 GCAGTCATATAAACTTGGAAGGACA 59.120 40.000 0.00 0.00 0.00 4.02
269 270 5.880332 TGCAGTCATATAAACTTGGAAGGAC 59.120 40.000 0.00 0.00 0.00 3.85
270 271 6.061022 TGCAGTCATATAAACTTGGAAGGA 57.939 37.500 0.00 0.00 0.00 3.36
271 272 6.115446 TCTGCAGTCATATAAACTTGGAAGG 58.885 40.000 14.67 0.00 0.00 3.46
272 273 6.238320 GCTCTGCAGTCATATAAACTTGGAAG 60.238 42.308 14.67 0.00 0.00 3.46
273 274 5.586243 GCTCTGCAGTCATATAAACTTGGAA 59.414 40.000 14.67 0.00 0.00 3.53
276 277 4.877823 TGGCTCTGCAGTCATATAAACTTG 59.122 41.667 14.67 0.00 0.00 3.16
288 289 1.271656 GCTTGAAATTGGCTCTGCAGT 59.728 47.619 14.67 0.00 0.00 4.40
289 290 1.271379 TGCTTGAAATTGGCTCTGCAG 59.729 47.619 7.63 7.63 0.00 4.41
297 298 6.128117 CCATTCAAATTCCTGCTTGAAATTGG 60.128 38.462 13.18 8.49 42.96 3.16
317 318 5.505173 TCTTAGCTGCAAATAAGCCATTC 57.495 39.130 1.02 0.00 41.82 2.67
329 330 5.046304 AGAGTATTTGTTCCTCTTAGCTGCA 60.046 40.000 1.02 0.00 31.64 4.41
330 331 5.423886 AGAGTATTTGTTCCTCTTAGCTGC 58.576 41.667 0.00 0.00 31.64 5.25
333 336 8.499403 AATGAAGAGTATTTGTTCCTCTTAGC 57.501 34.615 0.00 0.00 43.64 3.09
357 360 1.152567 CCAGGACCCAAGCCACAAA 60.153 57.895 0.00 0.00 0.00 2.83
361 364 2.310930 AAAAGCCAGGACCCAAGCCA 62.311 55.000 0.00 0.00 0.00 4.75
362 365 1.533994 AAAAGCCAGGACCCAAGCC 60.534 57.895 0.00 0.00 0.00 4.35
363 366 1.866853 CGAAAAGCCAGGACCCAAGC 61.867 60.000 0.00 0.00 0.00 4.01
364 367 0.537371 ACGAAAAGCCAGGACCCAAG 60.537 55.000 0.00 0.00 0.00 3.61
365 368 0.106419 AACGAAAAGCCAGGACCCAA 60.106 50.000 0.00 0.00 0.00 4.12
366 369 0.821711 CAACGAAAAGCCAGGACCCA 60.822 55.000 0.00 0.00 0.00 4.51
367 370 0.536460 TCAACGAAAAGCCAGGACCC 60.536 55.000 0.00 0.00 0.00 4.46
368 371 1.534729 ATCAACGAAAAGCCAGGACC 58.465 50.000 0.00 0.00 0.00 4.46
369 372 4.965119 ATTATCAACGAAAAGCCAGGAC 57.035 40.909 0.00 0.00 0.00 3.85
370 373 5.741011 ACTATTATCAACGAAAAGCCAGGA 58.259 37.500 0.00 0.00 0.00 3.86
371 374 5.817816 AGACTATTATCAACGAAAAGCCAGG 59.182 40.000 0.00 0.00 0.00 4.45
372 375 6.910536 AGACTATTATCAACGAAAAGCCAG 57.089 37.500 0.00 0.00 0.00 4.85
373 376 6.479001 GCTAGACTATTATCAACGAAAAGCCA 59.521 38.462 0.00 0.00 0.00 4.75
407 410 1.455402 TGAAGCAGGCCACAGCAAA 60.455 52.632 5.01 0.00 42.56 3.68
415 418 0.538287 AAGGTTGACTGAAGCAGGCC 60.538 55.000 0.00 0.00 39.07 5.19
420 423 2.038557 TGGGAGTAAGGTTGACTGAAGC 59.961 50.000 0.00 0.00 0.00 3.86
436 439 1.879380 CTAGAGAGACTGCGATGGGAG 59.121 57.143 0.00 0.00 37.67 4.30
437 440 1.477740 CCTAGAGAGACTGCGATGGGA 60.478 57.143 0.00 0.00 0.00 4.37
438 441 0.958091 CCTAGAGAGACTGCGATGGG 59.042 60.000 0.00 0.00 0.00 4.00
439 442 0.313672 GCCTAGAGAGACTGCGATGG 59.686 60.000 0.00 0.00 0.00 3.51
441 444 2.065899 AAGCCTAGAGAGACTGCGAT 57.934 50.000 0.00 0.00 0.00 4.58
444 447 4.398319 AGAGATAAGCCTAGAGAGACTGC 58.602 47.826 0.00 0.00 0.00 4.40
445 448 6.772716 AGAAAGAGATAAGCCTAGAGAGACTG 59.227 42.308 0.00 0.00 0.00 3.51
446 449 6.911308 AGAAAGAGATAAGCCTAGAGAGACT 58.089 40.000 0.00 0.00 0.00 3.24
447 450 6.998673 AGAGAAAGAGATAAGCCTAGAGAGAC 59.001 42.308 0.00 0.00 0.00 3.36
449 452 6.772716 ACAGAGAAAGAGATAAGCCTAGAGAG 59.227 42.308 0.00 0.00 0.00 3.20
450 453 6.668645 ACAGAGAAAGAGATAAGCCTAGAGA 58.331 40.000 0.00 0.00 0.00 3.10
451 454 6.959639 ACAGAGAAAGAGATAAGCCTAGAG 57.040 41.667 0.00 0.00 0.00 2.43
461 464 9.620259 ACAAAAGACTAAAACAGAGAAAGAGAT 57.380 29.630 0.00 0.00 0.00 2.75
504 511 8.186821 CCTACTGCGTACTTTTACTACTGTAAT 58.813 37.037 0.00 0.00 38.31 1.89
505 512 7.362056 CCCTACTGCGTACTTTTACTACTGTAA 60.362 40.741 0.00 0.00 36.92 2.41
507 514 5.105997 CCCTACTGCGTACTTTTACTACTGT 60.106 44.000 0.00 0.00 0.00 3.55
508 515 5.124457 TCCCTACTGCGTACTTTTACTACTG 59.876 44.000 0.00 0.00 0.00 2.74
509 516 5.256474 TCCCTACTGCGTACTTTTACTACT 58.744 41.667 0.00 0.00 0.00 2.57
510 517 5.567138 TCCCTACTGCGTACTTTTACTAC 57.433 43.478 0.00 0.00 0.00 2.73
519 526 9.947669 CATTATATAGTTATCCCTACTGCGTAC 57.052 37.037 0.00 0.00 0.00 3.67
523 530 7.711339 GCCACATTATATAGTTATCCCTACTGC 59.289 40.741 0.00 0.00 0.00 4.40
524 531 7.921214 CGCCACATTATATAGTTATCCCTACTG 59.079 40.741 0.00 0.00 0.00 2.74
525 532 7.417570 GCGCCACATTATATAGTTATCCCTACT 60.418 40.741 0.00 0.00 0.00 2.57
526 533 6.700520 GCGCCACATTATATAGTTATCCCTAC 59.299 42.308 0.00 0.00 0.00 3.18
527 534 6.381707 TGCGCCACATTATATAGTTATCCCTA 59.618 38.462 4.18 0.00 0.00 3.53
528 535 5.188948 TGCGCCACATTATATAGTTATCCCT 59.811 40.000 4.18 0.00 0.00 4.20
529 536 5.424757 TGCGCCACATTATATAGTTATCCC 58.575 41.667 4.18 0.00 0.00 3.85
530 537 6.986817 AGATGCGCCACATTATATAGTTATCC 59.013 38.462 4.18 0.00 39.84 2.59
531 538 7.706607 TCAGATGCGCCACATTATATAGTTATC 59.293 37.037 4.18 0.00 39.84 1.75
534 541 5.639506 GTCAGATGCGCCACATTATATAGTT 59.360 40.000 4.18 0.00 39.84 2.24
544 551 2.265739 GAGGTCAGATGCGCCACA 59.734 61.111 4.18 0.00 0.00 4.17
558 565 3.842923 ACGAGCGCATCCCTGAGG 61.843 66.667 11.47 0.00 0.00 3.86
560 567 4.819761 GCACGAGCGCATCCCTGA 62.820 66.667 11.47 0.00 0.00 3.86
570 577 1.112459 CTTTTGTCAAACGCACGAGC 58.888 50.000 0.00 0.00 37.42 5.03
571 578 2.101125 CACTTTTGTCAAACGCACGAG 58.899 47.619 0.00 0.00 0.00 4.18
572 579 1.792273 GCACTTTTGTCAAACGCACGA 60.792 47.619 0.00 0.00 0.00 4.35
573 580 0.565679 GCACTTTTGTCAAACGCACG 59.434 50.000 0.00 0.00 0.00 5.34
574 581 1.583404 CTGCACTTTTGTCAAACGCAC 59.417 47.619 10.64 1.48 0.00 5.34
575 582 1.201181 ACTGCACTTTTGTCAAACGCA 59.799 42.857 12.98 12.98 0.00 5.24
576 583 1.583404 CACTGCACTTTTGTCAAACGC 59.417 47.619 0.00 2.36 0.00 4.84
577 584 3.100817 CTCACTGCACTTTTGTCAAACG 58.899 45.455 0.00 0.00 0.00 3.60
578 585 3.119495 ACCTCACTGCACTTTTGTCAAAC 60.119 43.478 0.00 0.00 0.00 2.93
579 586 3.088532 ACCTCACTGCACTTTTGTCAAA 58.911 40.909 0.00 0.00 0.00 2.69
580 587 2.423185 CACCTCACTGCACTTTTGTCAA 59.577 45.455 0.00 0.00 0.00 3.18
581 588 2.016318 CACCTCACTGCACTTTTGTCA 58.984 47.619 0.00 0.00 0.00 3.58
582 589 2.017049 ACACCTCACTGCACTTTTGTC 58.983 47.619 0.00 0.00 0.00 3.18
583 590 2.017049 GACACCTCACTGCACTTTTGT 58.983 47.619 0.00 0.00 0.00 2.83
584 591 1.003545 CGACACCTCACTGCACTTTTG 60.004 52.381 0.00 0.00 0.00 2.44
585 592 1.299541 CGACACCTCACTGCACTTTT 58.700 50.000 0.00 0.00 0.00 2.27
586 593 1.160329 GCGACACCTCACTGCACTTT 61.160 55.000 0.00 0.00 0.00 2.66
587 594 1.595382 GCGACACCTCACTGCACTT 60.595 57.895 0.00 0.00 0.00 3.16
588 595 2.029666 GCGACACCTCACTGCACT 59.970 61.111 0.00 0.00 0.00 4.40
589 596 3.044305 GGCGACACCTCACTGCAC 61.044 66.667 0.00 0.00 34.51 4.57
622 629 3.582647 GTGGGGATTCTTGGTGGATTTTT 59.417 43.478 0.00 0.00 0.00 1.94
626 633 1.285962 CAGTGGGGATTCTTGGTGGAT 59.714 52.381 0.00 0.00 0.00 3.41
644 651 6.963049 AAAACCGCTACTACAAATCTACAG 57.037 37.500 0.00 0.00 0.00 2.74
648 655 6.935208 AGAAGAAAAACCGCTACTACAAATCT 59.065 34.615 0.00 0.00 0.00 2.40
653 660 5.630680 CGTTAGAAGAAAAACCGCTACTACA 59.369 40.000 0.00 0.00 0.00 2.74
660 667 2.286536 TGCACGTTAGAAGAAAAACCGC 60.287 45.455 0.00 0.00 0.00 5.68
664 671 6.734137 ACAATGATGCACGTTAGAAGAAAAA 58.266 32.000 0.00 0.00 0.00 1.94
674 682 3.565482 AGTCTTCAACAATGATGCACGTT 59.435 39.130 0.00 0.00 34.96 3.99
675 683 3.141398 AGTCTTCAACAATGATGCACGT 58.859 40.909 0.00 0.00 34.96 4.49
677 685 4.083855 TCGAAGTCTTCAACAATGATGCAC 60.084 41.667 12.99 0.00 34.96 4.57
686 694 4.866508 ATGGTACTCGAAGTCTTCAACA 57.133 40.909 12.99 2.38 0.00 3.33
687 695 5.694910 TCAAATGGTACTCGAAGTCTTCAAC 59.305 40.000 12.99 4.95 0.00 3.18
694 702 4.631813 GCATTCTCAAATGGTACTCGAAGT 59.368 41.667 0.00 0.00 42.18 3.01
698 706 3.535561 AGGCATTCTCAAATGGTACTCG 58.464 45.455 0.00 0.00 42.18 4.18
702 710 4.661222 TGACAAGGCATTCTCAAATGGTA 58.339 39.130 0.79 0.00 42.18 3.25
704 712 3.675228 GCTGACAAGGCATTCTCAAATGG 60.675 47.826 0.00 0.00 42.18 3.16
715 723 1.610038 CAAATCACTGCTGACAAGGCA 59.390 47.619 0.00 0.00 38.10 4.75
728 736 4.574013 CAGCAAGGATCTAGACCAAATCAC 59.426 45.833 12.18 0.00 0.00 3.06
735 743 2.111384 TGGACAGCAAGGATCTAGACC 58.889 52.381 0.00 0.00 0.00 3.85
742 750 5.702670 CGTATAATGAATGGACAGCAAGGAT 59.297 40.000 0.00 0.00 0.00 3.24
756 764 8.893219 AGATTCATCTTTCAGCGTATAATGAA 57.107 30.769 0.00 0.00 36.44 2.57
757 765 7.327032 CGAGATTCATCTTTCAGCGTATAATGA 59.673 37.037 0.00 0.00 37.25 2.57
759 767 7.327275 GTCGAGATTCATCTTTCAGCGTATAAT 59.673 37.037 0.00 0.00 37.25 1.28
760 768 6.637254 GTCGAGATTCATCTTTCAGCGTATAA 59.363 38.462 0.00 0.00 37.25 0.98
761 769 6.017026 AGTCGAGATTCATCTTTCAGCGTATA 60.017 38.462 0.00 0.00 37.25 1.47
763 771 4.096532 AGTCGAGATTCATCTTTCAGCGTA 59.903 41.667 0.00 0.00 37.25 4.42
764 772 3.119316 AGTCGAGATTCATCTTTCAGCGT 60.119 43.478 0.00 0.00 37.25 5.07
765 773 3.443037 AGTCGAGATTCATCTTTCAGCG 58.557 45.455 0.00 0.00 37.25 5.18
766 774 5.349817 TCAAAGTCGAGATTCATCTTTCAGC 59.650 40.000 0.00 0.00 37.25 4.26
768 776 6.223120 TGTCAAAGTCGAGATTCATCTTTCA 58.777 36.000 0.00 0.00 37.25 2.69
770 778 6.314896 GGATGTCAAAGTCGAGATTCATCTTT 59.685 38.462 11.87 3.29 37.25 2.52
771 779 5.814705 GGATGTCAAAGTCGAGATTCATCTT 59.185 40.000 11.87 0.00 37.25 2.40
772 780 5.128499 AGGATGTCAAAGTCGAGATTCATCT 59.872 40.000 11.87 0.00 40.50 2.90
773 781 5.355596 AGGATGTCAAAGTCGAGATTCATC 58.644 41.667 0.00 0.00 0.00 2.92
774 782 5.350504 AGGATGTCAAAGTCGAGATTCAT 57.649 39.130 0.00 0.00 0.00 2.57
775 783 4.808414 AGGATGTCAAAGTCGAGATTCA 57.192 40.909 0.00 0.00 0.00 2.57
776 784 5.651530 TGTAGGATGTCAAAGTCGAGATTC 58.348 41.667 0.00 0.00 0.00 2.52
777 785 5.661056 TGTAGGATGTCAAAGTCGAGATT 57.339 39.130 0.00 0.00 0.00 2.40
778 786 5.860941 ATGTAGGATGTCAAAGTCGAGAT 57.139 39.130 0.00 0.00 0.00 2.75
779 787 5.661056 AATGTAGGATGTCAAAGTCGAGA 57.339 39.130 0.00 0.00 0.00 4.04
780 788 5.869344 TGAAATGTAGGATGTCAAAGTCGAG 59.131 40.000 0.00 0.00 0.00 4.04
781 789 5.789521 TGAAATGTAGGATGTCAAAGTCGA 58.210 37.500 0.00 0.00 0.00 4.20
782 790 6.668541 ATGAAATGTAGGATGTCAAAGTCG 57.331 37.500 0.00 0.00 0.00 4.18
788 796 9.850198 TCATCAAATATGAAATGTAGGATGTCA 57.150 29.630 0.00 0.00 39.49 3.58
926 934 5.591877 ACAAGGATGATTTGATTAGCTGACC 59.408 40.000 0.00 0.00 0.00 4.02
961 969 0.611896 AGCCCCCGGTGAAGAAAATG 60.612 55.000 0.00 0.00 0.00 2.32
991 999 0.396811 GGCATACCCATTACGCCTCT 59.603 55.000 0.00 0.00 39.73 3.69
1004 1012 0.106015 AATGGGGAAGCAGGGCATAC 60.106 55.000 0.00 0.00 0.00 2.39
1009 1017 1.758862 GATGAAAATGGGGAAGCAGGG 59.241 52.381 0.00 0.00 0.00 4.45
1062 1070 0.608130 TCCCCTGTGTCAGTTGATCG 59.392 55.000 0.00 0.00 0.00 3.69
1095 1103 0.611896 TGGAGACGAGCAGATCACCA 60.612 55.000 0.00 0.00 0.00 4.17
1101 1109 0.820226 CATCCTTGGAGACGAGCAGA 59.180 55.000 0.00 0.00 40.85 4.26
1102 1110 0.179089 CCATCCTTGGAGACGAGCAG 60.179 60.000 0.00 0.00 46.92 4.24
1104 1112 1.522580 GCCATCCTTGGAGACGAGC 60.523 63.158 0.00 0.00 46.92 5.03
1311 1319 2.638354 CCAAAGCATGCGGCCTTCA 61.638 57.895 13.01 0.00 46.50 3.02
1413 1421 1.588824 ATACGACTGTGCCGTTCGGA 61.589 55.000 15.69 0.00 40.95 4.55
1512 1520 2.668212 TTCCAAGCGACAAGGCGG 60.668 61.111 0.00 0.00 38.18 6.13
1606 1617 0.320771 CAGTACAGCTTGGCTCCGTT 60.321 55.000 0.00 0.00 36.40 4.44
1674 1685 1.891919 GACGGAGCTGTTGTTGCCA 60.892 57.895 0.00 0.00 0.00 4.92
1682 1693 1.863662 CTGGTACACGACGGAGCTGT 61.864 60.000 0.00 0.00 0.00 4.40
1707 1718 0.986019 ACCTGTCCCCTGTGTTGACA 60.986 55.000 0.00 0.00 37.45 3.58
1749 1760 2.202401 GCGTACGGTGAGTCGTCC 60.202 66.667 18.39 0.00 42.82 4.79
1869 1880 1.218047 GCCACACGAGCCATAGACA 59.782 57.895 0.00 0.00 0.00 3.41
1930 1941 1.815003 CTCAAACCCATCCAAGCACTC 59.185 52.381 0.00 0.00 0.00 3.51
2001 2012 4.512571 AGAAAATGATTTTTGCTGCCACAC 59.487 37.500 4.46 0.00 35.20 3.82
2341 2354 7.177568 GGAGTACTTATCTCTGCTGGATGATTA 59.822 40.741 0.00 0.00 33.06 1.75
2365 2378 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
2366 2379 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
2367 2380 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
2368 2381 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
2369 2382 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
2382 2395 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
2384 2397 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
2400 2413 9.601971 GATCTAAACGCTAGATCACTACTTTAG 57.398 37.037 21.71 8.06 45.61 1.85
2453 2466 9.099454 CCTCTGTAGAAAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
2454 2467 7.711339 CCCTCTGTAGAAAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
2455 2468 7.069578 TCCCTCTGTAGAAAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
2456 2469 7.434492 TCCCTCTGTAGAAAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
2457 2470 8.425703 ACTCCCTCTGTAGAAAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
2465 2478 7.996644 TGTTTTGTACTCCCTCTGTAGAAAAAT 59.003 33.333 9.42 0.00 41.43 1.82
2467 2480 6.891388 TGTTTTGTACTCCCTCTGTAGAAAA 58.109 36.000 0.00 0.00 39.29 2.29
2468 2481 6.463897 CCTGTTTTGTACTCCCTCTGTAGAAA 60.464 42.308 0.00 0.00 33.39 2.52
2469 2482 5.011738 CCTGTTTTGTACTCCCTCTGTAGAA 59.988 44.000 0.00 0.00 0.00 2.10
2470 2483 4.527038 CCTGTTTTGTACTCCCTCTGTAGA 59.473 45.833 0.00 0.00 0.00 2.59
2471 2484 4.322801 CCCTGTTTTGTACTCCCTCTGTAG 60.323 50.000 0.00 0.00 0.00 2.74
2474 2487 2.637872 TCCCTGTTTTGTACTCCCTCTG 59.362 50.000 0.00 0.00 0.00 3.35
2475 2488 2.986050 TCCCTGTTTTGTACTCCCTCT 58.014 47.619 0.00 0.00 0.00 3.69
2476 2489 3.782656 TTCCCTGTTTTGTACTCCCTC 57.217 47.619 0.00 0.00 0.00 4.30
2477 2490 4.741928 ATTTCCCTGTTTTGTACTCCCT 57.258 40.909 0.00 0.00 0.00 4.20
2478 2491 5.801531 AAATTTCCCTGTTTTGTACTCCC 57.198 39.130 0.00 0.00 0.00 4.30
2479 2492 8.080417 GTCTAAAATTTCCCTGTTTTGTACTCC 58.920 37.037 0.00 0.00 0.00 3.85
2480 2493 8.626526 TGTCTAAAATTTCCCTGTTTTGTACTC 58.373 33.333 0.00 0.00 0.00 2.59
2508 2521 1.755380 AGTATGTTCGCCTACAGTCCC 59.245 52.381 0.00 0.00 0.00 4.46
2763 2777 5.363580 TGCATGAAGTACCATGACTGATCTA 59.636 40.000 14.19 0.00 44.98 1.98
2819 2862 7.036996 TCACAACAGAATTTACTGCATCAAA 57.963 32.000 0.00 0.00 41.06 2.69
2891 2939 1.377202 CAGGCATGCTACAACCGGT 60.377 57.895 18.92 0.00 0.00 5.28
2951 2999 9.785982 AGGAAGGTAATTATTGCTCTATCTTTC 57.214 33.333 0.00 0.00 0.00 2.62
2961 3009 7.404671 TGAAGGAAAGGAAGGTAATTATTGC 57.595 36.000 0.00 0.00 0.00 3.56
2969 3017 5.572885 GCTTGGTATGAAGGAAAGGAAGGTA 60.573 44.000 0.00 0.00 0.00 3.08
3028 3076 1.904771 CCGTACCCCTGCTGATTGA 59.095 57.895 0.00 0.00 0.00 2.57
3049 3100 8.159344 TCAGTTTCTTCTTGATTTCCTTCTTC 57.841 34.615 0.00 0.00 0.00 2.87
3089 3140 3.431486 CCTCCAAGATCACTAGAAGCACC 60.431 52.174 0.00 0.00 0.00 5.01
3142 3193 2.121291 TTGCGGCCACAATATCTTCA 57.879 45.000 0.95 0.00 0.00 3.02
3162 3213 5.896073 ATTGGAGTCGGAGAAATTATCCT 57.104 39.130 5.05 0.00 39.69 3.24
3267 3318 1.742761 ATCAGACCACAATTCTGGCG 58.257 50.000 0.00 0.00 40.87 5.69
3387 3441 3.402628 TTCTCCACTGAAACCTACTGC 57.597 47.619 0.00 0.00 0.00 4.40
3813 3877 6.114767 TGTATTATCTTGCAGCATGAACAGA 58.885 36.000 14.55 5.66 39.69 3.41
3859 3923 8.032451 CCCTTTAATTATTTTGAACCGTGTCAT 58.968 33.333 0.00 0.00 0.00 3.06
4211 4286 9.444600 GAAAATAGTACCCAACTAAACTCATCA 57.555 33.333 0.00 0.00 43.87 3.07
4245 4324 9.660180 AACAACAGCCTTTAGTTTTTGAATTTA 57.340 25.926 0.00 0.00 0.00 1.40
4246 4325 8.560355 AACAACAGCCTTTAGTTTTTGAATTT 57.440 26.923 0.00 0.00 0.00 1.82
4298 4377 9.632807 CCGACAAATCTGGTTAATTATTCAAAA 57.367 29.630 0.00 0.00 0.00 2.44
4466 4545 7.342581 GCTTTGGGGGATTTAAATTGGAATTA 58.657 34.615 1.43 0.00 0.00 1.40
4495 4574 5.292101 CCTAATCAAACACGACTGAAGATCC 59.708 44.000 0.00 0.00 0.00 3.36
4504 4583 4.693566 TGGAACATCCTAATCAAACACGAC 59.306 41.667 0.00 0.00 37.46 4.34
4586 4675 0.755327 AAGGGGCAGTTTGGTCACAC 60.755 55.000 0.00 0.00 0.00 3.82
4841 4933 6.289064 ACTCTAGTTTTGTTTAGGTCACCAG 58.711 40.000 0.00 0.00 0.00 4.00
4937 5030 1.238439 ACCAGCAATTGTTGAGTCCG 58.762 50.000 22.31 8.60 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.