Multiple sequence alignment - TraesCS2A01G535100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G535100 chr2A 100.000 4359 0 0 1 4359 750210801 750206443 0.000000e+00 8050.0
1 TraesCS2A01G535100 chr2A 91.914 742 56 4 1943 2682 749971809 749972548 0.000000e+00 1035.0
2 TraesCS2A01G535100 chr2A 87.802 787 78 10 1175 1957 749970260 749971032 0.000000e+00 905.0
3 TraesCS2A01G535100 chr2A 82.667 825 128 9 1938 2750 720224772 720223951 0.000000e+00 717.0
4 TraesCS2A01G535100 chr2A 85.306 490 64 5 2004 2487 721063674 721063187 2.340000e-137 499.0
5 TraesCS2A01G535100 chr2A 83.840 526 65 10 2678 3200 750047414 750047922 2.360000e-132 483.0
6 TraesCS2A01G535100 chr2A 78.220 427 80 10 1356 1777 720225709 720225291 1.200000e-65 261.0
7 TraesCS2A01G535100 chr2A 92.982 171 9 2 976 1145 749970096 749970264 3.370000e-61 246.0
8 TraesCS2A01G535100 chr2A 82.609 161 26 2 3198 3357 750232496 750232337 1.630000e-29 141.0
9 TraesCS2A01G535100 chr2A 92.188 64 5 0 1946 2009 721064825 721064762 1.670000e-14 91.6
10 TraesCS2A01G535100 chr2D 95.336 3066 118 12 976 4024 619146463 619149520 0.000000e+00 4846.0
11 TraesCS2A01G535100 chr2D 95.562 338 15 0 4022 4359 619163845 619164182 3.830000e-150 542.0
12 TraesCS2A01G535100 chr2D 81.423 253 43 2 1528 1777 586055526 586055777 2.060000e-48 204.0
13 TraesCS2A01G535100 chr2B 92.699 2972 176 9 1396 4359 756636551 756639489 0.000000e+00 4248.0
14 TraesCS2A01G535100 chr2B 91.630 2485 189 11 1887 4359 756969064 756971541 0.000000e+00 3419.0
15 TraesCS2A01G535100 chr2B 88.037 2190 215 30 1175 3354 756705384 756707536 0.000000e+00 2549.0
16 TraesCS2A01G535100 chr2B 89.308 636 62 5 1175 1809 756968312 756968942 0.000000e+00 793.0
17 TraesCS2A01G535100 chr2B 83.313 809 107 15 1943 2745 707959871 707959085 0.000000e+00 721.0
18 TraesCS2A01G535100 chr2B 82.002 839 126 15 1927 2749 707656929 707656100 0.000000e+00 689.0
19 TraesCS2A01G535100 chr2B 96.571 175 6 0 976 1150 756636189 756636363 1.530000e-74 291.0
20 TraesCS2A01G535100 chr2B 92.893 197 9 1 1175 1366 756636354 756636550 9.230000e-72 281.0
21 TraesCS2A01G535100 chr2B 93.529 170 9 1 976 1145 756705221 756705388 7.240000e-63 252.0
22 TraesCS2A01G535100 chr2B 90.341 176 13 3 976 1150 756968149 756968321 1.220000e-55 228.0
23 TraesCS2A01G535100 chr2B 81.853 259 43 2 1522 1777 707622103 707621846 9.490000e-52 215.0
24 TraesCS2A01G535100 chr4A 98.479 986 13 2 1 984 612952413 612953398 0.000000e+00 1736.0
25 TraesCS2A01G535100 chr4A 98.564 975 14 0 1 975 603518452 603517478 0.000000e+00 1724.0
26 TraesCS2A01G535100 chr1A 98.770 976 12 0 1 976 523862860 523863835 0.000000e+00 1736.0
27 TraesCS2A01G535100 chr5A 98.770 976 11 1 1 975 11330446 11331421 0.000000e+00 1735.0
28 TraesCS2A01G535100 chr5A 98.564 975 13 1 1 975 554124261 554123288 0.000000e+00 1722.0
29 TraesCS2A01G535100 chr5A 77.363 455 68 20 3901 4333 690951652 690952093 2.030000e-58 237.0
30 TraesCS2A01G535100 chr3A 98.667 975 13 0 1 975 35942926 35941952 0.000000e+00 1729.0
31 TraesCS2A01G535100 chr3A 98.564 975 14 0 1 975 722518510 722517536 0.000000e+00 1724.0
32 TraesCS2A01G535100 chr6A 98.569 978 12 2 1 978 601976786 601975811 0.000000e+00 1727.0
33 TraesCS2A01G535100 chr7A 98.272 984 16 1 1 984 603145983 603145001 0.000000e+00 1722.0
34 TraesCS2A01G535100 chr7A 80.165 484 61 18 3898 4359 547105116 547104646 3.250000e-86 329.0
35 TraesCS2A01G535100 chrUn 84.915 822 114 8 1940 2755 74781483 74782300 0.000000e+00 822.0
36 TraesCS2A01G535100 chrUn 76.471 459 71 16 3901 4336 126938003 126937559 9.490000e-52 215.0
37 TraesCS2A01G535100 chr6D 76.122 557 115 12 1234 1781 446622030 446621483 4.290000e-70 276.0
38 TraesCS2A01G535100 chr4B 77.243 457 65 21 3901 4333 653415518 653415077 9.430000e-57 231.0
39 TraesCS2A01G535100 chr4B 84.034 119 18 1 3901 4018 653382305 653382187 3.560000e-21 113.0
40 TraesCS2A01G535100 chr7D 78.415 366 43 17 3898 4241 448868733 448869084 5.710000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G535100 chr2A 750206443 750210801 4358 True 8050.000000 8050 100.000000 1 4359 1 chr2A.!!$R1 4358
1 TraesCS2A01G535100 chr2A 749970096 749972548 2452 False 728.666667 1035 90.899333 976 2682 3 chr2A.!!$F2 1706
2 TraesCS2A01G535100 chr2A 720223951 720225709 1758 True 489.000000 717 80.443500 1356 2750 2 chr2A.!!$R3 1394
3 TraesCS2A01G535100 chr2A 750047414 750047922 508 False 483.000000 483 83.840000 2678 3200 1 chr2A.!!$F1 522
4 TraesCS2A01G535100 chr2A 721063187 721064825 1638 True 295.300000 499 88.747000 1946 2487 2 chr2A.!!$R4 541
5 TraesCS2A01G535100 chr2D 619146463 619149520 3057 False 4846.000000 4846 95.336000 976 4024 1 chr2D.!!$F2 3048
6 TraesCS2A01G535100 chr2B 756636189 756639489 3300 False 1606.666667 4248 94.054333 976 4359 3 chr2B.!!$F1 3383
7 TraesCS2A01G535100 chr2B 756968149 756971541 3392 False 1480.000000 3419 90.426333 976 4359 3 chr2B.!!$F3 3383
8 TraesCS2A01G535100 chr2B 756705221 756707536 2315 False 1400.500000 2549 90.783000 976 3354 2 chr2B.!!$F2 2378
9 TraesCS2A01G535100 chr2B 707959085 707959871 786 True 721.000000 721 83.313000 1943 2745 1 chr2B.!!$R3 802
10 TraesCS2A01G535100 chr2B 707656100 707656929 829 True 689.000000 689 82.002000 1927 2749 1 chr2B.!!$R2 822
11 TraesCS2A01G535100 chr4A 612952413 612953398 985 False 1736.000000 1736 98.479000 1 984 1 chr4A.!!$F1 983
12 TraesCS2A01G535100 chr4A 603517478 603518452 974 True 1724.000000 1724 98.564000 1 975 1 chr4A.!!$R1 974
13 TraesCS2A01G535100 chr1A 523862860 523863835 975 False 1736.000000 1736 98.770000 1 976 1 chr1A.!!$F1 975
14 TraesCS2A01G535100 chr5A 11330446 11331421 975 False 1735.000000 1735 98.770000 1 975 1 chr5A.!!$F1 974
15 TraesCS2A01G535100 chr5A 554123288 554124261 973 True 1722.000000 1722 98.564000 1 975 1 chr5A.!!$R1 974
16 TraesCS2A01G535100 chr3A 35941952 35942926 974 True 1729.000000 1729 98.667000 1 975 1 chr3A.!!$R1 974
17 TraesCS2A01G535100 chr3A 722517536 722518510 974 True 1724.000000 1724 98.564000 1 975 1 chr3A.!!$R2 974
18 TraesCS2A01G535100 chr6A 601975811 601976786 975 True 1727.000000 1727 98.569000 1 978 1 chr6A.!!$R1 977
19 TraesCS2A01G535100 chr7A 603145001 603145983 982 True 1722.000000 1722 98.272000 1 984 1 chr7A.!!$R2 983
20 TraesCS2A01G535100 chrUn 74781483 74782300 817 False 822.000000 822 84.915000 1940 2755 1 chrUn.!!$F1 815
21 TraesCS2A01G535100 chr6D 446621483 446622030 547 True 276.000000 276 76.122000 1234 1781 1 chr6D.!!$R1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 661 0.883814 GCACTGTGCTCTGCTCTTGT 60.884 55.000 24.68 0.0 40.96 3.16 F
1406 1489 0.810648 TGATTGGACGCATTTCTGCC 59.189 50.000 0.00 0.0 46.07 4.85 F
2835 5203 1.065551 GCCAAGTGTTCGTTTTCTGCT 59.934 47.619 0.00 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 1839 1.119684 ACTTTGCCAAAACCTCCACC 58.880 50.0 0.00 0.00 0.00 4.61 R
2882 5253 0.678684 TCCGAGTGCATCCTGTCGTA 60.679 55.0 0.00 0.00 0.00 3.43 R
4001 6386 0.110056 GTTCAGCTCGGTGCACATTG 60.110 55.0 20.43 7.94 45.94 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
431 434 2.119029 TCGGTGATGAGATCGGCGT 61.119 57.895 6.85 0.00 0.00 5.68
658 661 0.883814 GCACTGTGCTCTGCTCTTGT 60.884 55.000 24.68 0.00 40.96 3.16
1015 1020 5.880887 GGAAGGAGTACATAAAAGGAAGGTG 59.119 44.000 0.00 0.00 0.00 4.00
1149 1193 4.702131 CCATGTCTTAACTTTCCCAGAAGG 59.298 45.833 0.00 0.00 0.00 3.46
1150 1194 5.514834 CCATGTCTTAACTTTCCCAGAAGGA 60.515 44.000 0.00 0.00 45.68 3.36
1161 1205 4.034285 TCCCAGAAGGAGAATTTTCACC 57.966 45.455 0.00 0.00 40.93 4.02
1162 1206 3.092301 CCCAGAAGGAGAATTTTCACCC 58.908 50.000 3.52 0.00 38.52 4.61
1163 1207 2.749621 CCAGAAGGAGAATTTTCACCCG 59.250 50.000 3.52 0.00 38.52 5.28
1164 1208 2.162408 CAGAAGGAGAATTTTCACCCGC 59.838 50.000 3.52 0.00 38.52 6.13
1165 1209 2.159382 GAAGGAGAATTTTCACCCGCA 58.841 47.619 3.52 0.00 38.52 5.69
1166 1210 2.286365 AGGAGAATTTTCACCCGCAA 57.714 45.000 3.52 0.00 38.52 4.85
1167 1211 2.807676 AGGAGAATTTTCACCCGCAAT 58.192 42.857 3.52 0.00 38.52 3.56
1168 1212 3.165071 AGGAGAATTTTCACCCGCAATT 58.835 40.909 3.52 0.00 38.52 2.32
1169 1213 3.578282 AGGAGAATTTTCACCCGCAATTT 59.422 39.130 3.52 0.00 38.52 1.82
1170 1214 4.040339 AGGAGAATTTTCACCCGCAATTTT 59.960 37.500 3.52 0.00 38.52 1.82
1171 1215 4.754618 GGAGAATTTTCACCCGCAATTTTT 59.245 37.500 0.00 0.00 32.58 1.94
1305 1354 1.201429 CCACCTGCCCTGGTAGTTCT 61.201 60.000 0.52 0.00 38.45 3.01
1321 1370 7.895975 GGTAGTTCTGGTTAAGAAATAACGT 57.104 36.000 0.00 0.00 44.62 3.99
1406 1489 0.810648 TGATTGGACGCATTTCTGCC 59.189 50.000 0.00 0.00 46.07 4.85
1431 1514 3.741344 CGACAAGAAAACCAGTCCAGTAG 59.259 47.826 0.00 0.00 0.00 2.57
1494 1577 3.023832 TGCATAGTCTTCGTCTGGATGA 58.976 45.455 0.00 0.00 0.00 2.92
1599 1691 5.886609 TGTCCTAATCAACAGGAAAATGGA 58.113 37.500 0.00 0.00 43.78 3.41
1602 1694 6.094186 GTCCTAATCAACAGGAAAATGGAGAC 59.906 42.308 0.00 0.00 43.78 3.36
1747 1839 1.101331 GGATTCCAGCTTGCTTGGAG 58.899 55.000 0.00 0.00 45.00 3.86
1941 3188 3.035942 CTCGGTTGAAAAAGTTTGCTCG 58.964 45.455 0.00 0.00 0.00 5.03
2012 4352 6.287589 AGTAAGAGTTCTGGACAAGGTATG 57.712 41.667 0.00 0.00 0.00 2.39
2057 4397 2.297880 TCTCATTGCAAAACTGCAGCAT 59.702 40.909 15.27 0.00 46.21 3.79
2826 5194 2.719798 CAAGTCTTTGCCAAGTGTTCG 58.280 47.619 0.00 0.00 0.00 3.95
2835 5203 1.065551 GCCAAGTGTTCGTTTTCTGCT 59.934 47.619 0.00 0.00 0.00 4.24
2846 5214 3.128589 TCGTTTTCTGCTGAGTGCTTTTT 59.871 39.130 0.00 0.00 43.37 1.94
2877 5248 1.074889 GGTTTAGGAGGGTCTTTGCCA 59.925 52.381 0.00 0.00 0.00 4.92
2882 5253 0.178990 GGAGGGTCTTTGCCAAGTGT 60.179 55.000 0.00 0.00 0.00 3.55
3025 5397 3.328931 GCCTGGAGATTATGGGAAGATGA 59.671 47.826 0.00 0.00 0.00 2.92
3030 5402 7.508296 CCTGGAGATTATGGGAAGATGAAAAAT 59.492 37.037 0.00 0.00 0.00 1.82
3031 5403 9.578576 CTGGAGATTATGGGAAGATGAAAAATA 57.421 33.333 0.00 0.00 0.00 1.40
3085 5457 0.895100 TGCCCACTTCATGAGGTTGC 60.895 55.000 17.59 17.59 0.00 4.17
3088 5460 1.608055 CCACTTCATGAGGTTGCACA 58.392 50.000 7.91 0.00 0.00 4.57
3272 5644 6.152379 GGAGAAAATGAGTTCCACAAATGAC 58.848 40.000 0.00 0.00 0.00 3.06
3344 5716 8.054152 TGTGCATGAATTTTAGTGTACATCAT 57.946 30.769 0.00 0.00 33.36 2.45
3591 5964 0.118346 TTCAGGTTAGGAGGAGGCCA 59.882 55.000 5.01 0.00 0.00 5.36
3880 6265 3.769844 TGTTTCTCAGGGGTACTCTGATC 59.230 47.826 15.92 9.93 40.07 2.92
3887 6272 3.117701 CAGGGGTACTCTGATCTCTCTCA 60.118 52.174 9.99 0.00 34.36 3.27
3978 6363 5.654603 AGTAACCACTCGACATGATACAA 57.345 39.130 0.00 0.00 0.00 2.41
4001 6386 1.218854 GCATGCAATTGGGGTGGAC 59.781 57.895 14.21 0.00 0.00 4.02
4002 6387 1.543065 GCATGCAATTGGGGTGGACA 61.543 55.000 14.21 0.00 0.00 4.02
4015 6400 1.965930 TGGACAATGTGCACCGAGC 60.966 57.895 15.69 0.00 45.96 5.03
4062 6447 2.709934 AGCAGATACATGATGGGAGCTT 59.290 45.455 0.00 0.00 0.00 3.74
4098 6483 8.912988 AGTGTGAACATTGATAAGGAAAGAAAA 58.087 29.630 0.00 0.00 0.00 2.29
4149 6534 3.515901 GGACTACCTCTCACAATCAAGGT 59.484 47.826 0.00 0.00 44.24 3.50
4175 6560 7.891183 ACTGCTAGTGTCTTGTAACTAAATG 57.109 36.000 0.00 0.00 0.00 2.32
4204 6589 5.073691 TCTGAGAAGGAATGGAGAAAGGTTT 59.926 40.000 0.00 0.00 0.00 3.27
4231 6616 2.026822 AGAAGTGCTTGGTCTATGGGTG 60.027 50.000 0.00 0.00 0.00 4.61
4252 6637 3.773667 TGATCTTCCAACTGAGCTCAGAT 59.226 43.478 42.76 32.15 46.59 2.90
4300 6685 0.031994 ACCACGGCATTTGAAGCAAC 59.968 50.000 0.00 0.00 0.00 4.17
4341 6726 2.062971 ATCCAGAAGATTGGCGCATT 57.937 45.000 10.83 0.00 38.16 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
252 255 4.436998 GTCGGCCCTCGTCCTGTG 62.437 72.222 0.00 0.00 40.32 3.66
281 284 7.095229 GCATCTTATATAGTGCGATGGTTTTGA 60.095 37.037 0.00 0.00 33.79 2.69
658 661 2.023791 TGCCTATATATACCCCCTCGCA 60.024 50.000 0.00 0.00 0.00 5.10
692 695 1.900981 CGGTTCATGCCACCAACCA 60.901 57.895 12.32 0.00 39.79 3.67
1015 1020 9.422196 GAATGTCGTGTATATTTAAACAAGAGC 57.578 33.333 0.00 0.00 35.31 4.09
1149 1193 5.922739 AAAAATTGCGGGTGAAAATTCTC 57.077 34.783 0.00 0.00 0.00 2.87
1168 1212 2.999185 ATGGCCTTCTGGGAGAAAAA 57.001 45.000 3.32 0.00 33.19 1.94
1169 1213 2.357154 GCTATGGCCTTCTGGGAGAAAA 60.357 50.000 3.32 0.00 33.19 2.29
1170 1214 1.212935 GCTATGGCCTTCTGGGAGAAA 59.787 52.381 3.32 0.00 33.19 2.52
1171 1215 0.839946 GCTATGGCCTTCTGGGAGAA 59.160 55.000 3.32 0.00 37.23 2.87
1172 1216 0.030705 AGCTATGGCCTTCTGGGAGA 60.031 55.000 3.32 0.00 39.73 3.71
1173 1217 1.622811 CTAGCTATGGCCTTCTGGGAG 59.377 57.143 3.32 0.00 39.73 4.30
1174 1218 1.062121 ACTAGCTATGGCCTTCTGGGA 60.062 52.381 3.32 0.00 39.73 4.37
1175 1219 1.428869 ACTAGCTATGGCCTTCTGGG 58.571 55.000 3.32 0.00 39.73 4.45
1176 1220 3.643792 AGTAACTAGCTATGGCCTTCTGG 59.356 47.826 3.32 0.04 39.73 3.86
1177 1221 4.946478 AGTAACTAGCTATGGCCTTCTG 57.054 45.455 3.32 0.00 39.73 3.02
1178 1222 7.619512 AAATAGTAACTAGCTATGGCCTTCT 57.380 36.000 3.32 0.00 39.73 2.85
1179 1223 8.678593 AAAAATAGTAACTAGCTATGGCCTTC 57.321 34.615 3.32 0.00 39.73 3.46
1207 1256 8.819974 CATTGGCCATTATTGTTAATTCAAGAC 58.180 33.333 6.09 0.00 0.00 3.01
1217 1266 7.499321 CAAATATGCATTGGCCATTATTGTT 57.501 32.000 6.09 0.00 40.13 2.83
1305 1354 8.806146 ACCTAGACTAACGTTATTTCTTAACCA 58.194 33.333 19.31 5.92 37.49 3.67
1406 1489 1.525619 GGACTGGTTTTCTTGTCGACG 59.474 52.381 11.62 0.00 0.00 5.12
1431 1514 8.543774 ACATGATATAATGGGGAGTACAATCTC 58.456 37.037 0.00 0.00 31.46 2.75
1517 1600 8.567285 AGATGTCGAAAACAAGAGGATATTTT 57.433 30.769 0.00 0.00 42.37 1.82
1599 1691 6.887002 AGTTTCTTCTGGTTTTTCTTCTGTCT 59.113 34.615 0.00 0.00 0.00 3.41
1602 1694 7.088589 TCAGTTTCTTCTGGTTTTTCTTCTG 57.911 36.000 0.00 0.00 36.25 3.02
1747 1839 1.119684 ACTTTGCCAAAACCTCCACC 58.880 50.000 0.00 0.00 0.00 4.61
1919 2371 3.242608 CGAGCAAACTTTTTCAACCGAGA 60.243 43.478 0.00 0.00 0.00 4.04
2012 4352 6.635030 ACTACTTCATTTTTGAACTCCACC 57.365 37.500 0.00 0.00 0.00 4.61
2057 4397 4.942483 CCGAGAAGTCTGACTAGGTTCTTA 59.058 45.833 11.30 0.00 31.68 2.10
2314 4670 3.587061 TCTTGGTGGAGATAAAGAAGGCA 59.413 43.478 0.00 0.00 0.00 4.75
2358 4714 2.119801 TGCTTGCTTTGAGATCCCTC 57.880 50.000 0.00 0.00 39.86 4.30
2361 4717 3.863142 ATGTTGCTTGCTTTGAGATCC 57.137 42.857 0.00 0.00 0.00 3.36
2589 4956 6.011717 TGCATATTCAGGGGACATATAACCAT 60.012 38.462 0.00 0.00 0.00 3.55
2835 5203 2.930950 AGTGTGGCTAAAAAGCACTCA 58.069 42.857 0.00 0.00 35.78 3.41
2877 5248 1.618837 AGTGCATCCTGTCGTACACTT 59.381 47.619 0.00 0.00 34.89 3.16
2882 5253 0.678684 TCCGAGTGCATCCTGTCGTA 60.679 55.000 0.00 0.00 0.00 3.43
3085 5457 1.200716 GTCCCACATGAATGCACTGTG 59.799 52.381 0.00 2.76 39.93 3.66
3088 5460 1.632409 AGAGTCCCACATGAATGCACT 59.368 47.619 0.00 0.00 0.00 4.40
3167 5539 2.157738 AGCACTGCACTTTCATTCTCC 58.842 47.619 3.30 0.00 0.00 3.71
3272 5644 3.308053 CCTTGAGCGTTGTCATACTCATG 59.692 47.826 0.00 0.00 38.84 3.07
3344 5716 2.683742 GCTTTAATGCTAGCTCCACCCA 60.684 50.000 17.23 0.00 34.57 4.51
3478 5851 4.238761 ACACTTCAGTTCGAATCGAGAA 57.761 40.909 5.24 5.60 37.14 2.87
3579 5952 2.041508 CAGGCTGGCCTCCTCCTA 60.042 66.667 11.60 0.00 46.28 2.94
3591 5964 0.401105 ATGATAGGTGGAGCCAGGCT 60.401 55.000 16.12 16.12 43.88 4.58
3691 6064 1.399714 TCGAAGGGCGTGATAGTCAT 58.600 50.000 0.00 0.00 41.80 3.06
3880 6265 1.659601 CGCATTGCTCAAGTGAGAGAG 59.340 52.381 12.54 0.20 44.74 3.20
3887 6272 1.518056 CCACACCGCATTGCTCAAGT 61.518 55.000 7.12 0.00 0.00 3.16
3978 6363 2.438411 CACCCCAATTGCATGCAAAAT 58.562 42.857 34.84 23.91 39.55 1.82
4001 6386 0.110056 GTTCAGCTCGGTGCACATTG 60.110 55.000 20.43 7.94 45.94 2.82
4002 6387 0.534877 TGTTCAGCTCGGTGCACATT 60.535 50.000 20.43 0.00 45.94 2.71
4010 6395 1.089112 TGCATCAATGTTCAGCTCGG 58.911 50.000 0.00 0.00 0.00 4.63
4015 6400 4.870221 TCTCGATTGCATCAATGTTCAG 57.130 40.909 0.00 0.00 33.90 3.02
4062 6447 5.436175 TCAATGTTCACACTCTTCCAAAGA 58.564 37.500 0.00 0.00 35.87 2.52
4098 6483 7.493971 CACATCTATCTCTCGAAGGTTTTCAAT 59.506 37.037 0.00 0.00 32.67 2.57
4149 6534 9.419297 CATTTAGTTACAAGACACTAGCAGTAA 57.581 33.333 0.00 0.00 0.00 2.24
4175 6560 5.365021 TCTCCATTCCTTCTCAGATTTCC 57.635 43.478 0.00 0.00 0.00 3.13
4204 6589 6.173339 CCATAGACCAAGCACTTCTCTTTAA 58.827 40.000 0.00 0.00 0.00 1.52
4231 6616 3.883830 TCTGAGCTCAGTTGGAAGATC 57.116 47.619 36.32 0.00 44.12 2.75
4252 6637 6.816140 TCATCATAACTCGAATACAAAGCACA 59.184 34.615 0.00 0.00 0.00 4.57
4300 6685 6.814146 GGATATGAGGCTAAATAGAGGAAACG 59.186 42.308 0.00 0.00 0.00 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.