Multiple sequence alignment - TraesCS2A01G535000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G535000 chr2A 100.000 2851 0 0 2734 5584 750195562 750198412 0.000000e+00 5265.0
1 TraesCS2A01G535000 chr2A 100.000 2414 0 0 1 2414 750192829 750195242 0.000000e+00 4458.0
2 TraesCS2A01G535000 chr2A 95.886 1191 38 6 2744 3931 778641410 778640228 0.000000e+00 1917.0
3 TraesCS2A01G535000 chr2A 95.420 1201 45 4 2734 3933 734589966 734591157 0.000000e+00 1905.0
4 TraesCS2A01G535000 chr2A 92.167 383 27 3 4309 4690 749958015 749957635 6.370000e-149 538.0
5 TraesCS2A01G535000 chr2A 86.256 422 36 6 4319 4735 750325122 750324718 6.640000e-119 438.0
6 TraesCS2A01G535000 chr2A 84.795 171 13 4 955 1116 749960132 749959966 5.790000e-35 159.0
7 TraesCS2A01G535000 chr1A 97.160 1197 32 2 2734 3930 3435794 3436988 0.000000e+00 2021.0
8 TraesCS2A01G535000 chrUn 96.653 1195 33 2 2734 3928 347917383 347918570 0.000000e+00 1978.0
9 TraesCS2A01G535000 chrUn 96.485 1195 35 2 2734 3928 347996855 347995668 0.000000e+00 1967.0
10 TraesCS2A01G535000 chrUn 86.256 422 36 6 4319 4735 327153833 327154237 6.640000e-119 438.0
11 TraesCS2A01G535000 chrUn 83.750 80 10 3 4228 4305 50872443 50872365 7.760000e-09 73.1
12 TraesCS2A01G535000 chrUn 83.750 80 10 3 4228 4305 50890355 50890277 7.760000e-09 73.1
13 TraesCS2A01G535000 chrUn 81.013 79 12 2 4228 4304 35292029 35292106 6.040000e-05 60.2
14 TraesCS2A01G535000 chrUn 81.013 79 12 2 4228 4304 319858104 319858027 6.040000e-05 60.2
15 TraesCS2A01G535000 chrUn 79.545 88 15 2 4219 4304 331092029 331092115 6.040000e-05 60.2
16 TraesCS2A01G535000 chr6A 96.494 1198 39 3 2734 3930 615705960 615704765 0.000000e+00 1977.0
17 TraesCS2A01G535000 chr6A 90.909 385 27 7 1132 1510 467154080 467154462 1.390000e-140 510.0
18 TraesCS2A01G535000 chr6A 87.500 120 13 2 1588 1706 268992689 268992571 2.710000e-28 137.0
19 TraesCS2A01G535000 chr7A 94.908 1198 59 2 2734 3931 1428413 1429608 0.000000e+00 1873.0
20 TraesCS2A01G535000 chr7A 89.119 579 36 14 1134 1706 54906451 54905894 0.000000e+00 695.0
21 TraesCS2A01G535000 chr7A 93.370 181 12 0 1134 1314 54907621 54907441 9.220000e-68 268.0
22 TraesCS2A01G535000 chr2B 94.912 1199 57 3 2734 3931 773429062 773427867 0.000000e+00 1873.0
23 TraesCS2A01G535000 chr2B 89.238 446 42 5 4296 4741 756641682 756641243 2.270000e-153 553.0
24 TraesCS2A01G535000 chr2B 90.686 408 32 3 4320 4723 756710682 756710277 6.370000e-149 538.0
25 TraesCS2A01G535000 chr2B 75.412 789 119 50 240 975 757279542 757278776 4.200000e-81 313.0
26 TraesCS2A01G535000 chr2B 87.153 288 19 7 4466 4741 757274950 757274669 1.510000e-80 311.0
27 TraesCS2A01G535000 chr2B 78.323 489 75 11 208 669 757536563 757536079 2.550000e-73 287.0
28 TraesCS2A01G535000 chr2B 85.789 190 17 7 931 1116 757532736 757532553 5.710000e-45 193.0
29 TraesCS2A01G535000 chr2B 92.424 132 10 0 985 1116 756713202 756713071 7.380000e-44 189.0
30 TraesCS2A01G535000 chr2B 89.286 140 14 1 4333 4472 757275672 757275534 2.070000e-39 174.0
31 TraesCS2A01G535000 chr2B 92.661 109 8 0 1008 1116 756644458 756644350 2.080000e-34 158.0
32 TraesCS2A01G535000 chr2B 100.000 31 0 0 2356 2386 756711135 756711105 2.170000e-04 58.4
33 TraesCS2A01G535000 chr4A 94.781 1188 60 2 2745 3932 36396364 36395179 0.000000e+00 1849.0
34 TraesCS2A01G535000 chr7D 92.814 668 23 3 1733 2394 498240788 498240140 0.000000e+00 944.0
35 TraesCS2A01G535000 chr7D 87.563 595 50 11 1116 1706 563461063 563460489 0.000000e+00 667.0
36 TraesCS2A01G535000 chr7D 95.423 284 5 2 3931 4208 498240154 498239873 3.970000e-121 446.0
37 TraesCS2A01G535000 chr7D 96.018 226 7 1 1117 1342 265384204 265383981 3.180000e-97 366.0
38 TraesCS2A01G535000 chr7D 97.156 211 6 0 1132 1342 265383308 265383098 1.910000e-94 357.0
39 TraesCS2A01G535000 chr7D 85.714 259 16 12 1448 1706 265383984 265383747 2.580000e-63 254.0
40 TraesCS2A01G535000 chr7D 87.446 231 9 8 869 1085 498242494 498242270 1.200000e-61 248.0
41 TraesCS2A01G535000 chr7D 80.328 183 12 10 313 493 498242824 498242664 3.530000e-22 117.0
42 TraesCS2A01G535000 chr7D 88.372 86 6 2 737 822 498242589 498242508 3.560000e-17 100.0
43 TraesCS2A01G535000 chr2D 89.901 604 52 6 4990 5584 619166482 619165879 0.000000e+00 769.0
44 TraesCS2A01G535000 chr2D 92.701 411 30 0 4310 4720 619096428 619096018 1.340000e-165 593.0
45 TraesCS2A01G535000 chr2D 87.907 430 29 6 4406 4831 619166904 619166494 8.410000e-133 484.0
46 TraesCS2A01G535000 chr2D 87.591 274 18 8 4462 4735 619281062 619280805 2.530000e-78 303.0
47 TraesCS2A01G535000 chr2D 87.586 145 14 4 1563 1706 536930955 536931096 1.240000e-36 165.0
48 TraesCS2A01G535000 chr2D 93.939 66 4 0 1008 1073 619281939 619281874 3.560000e-17 100.0
49 TraesCS2A01G535000 chr2D 82.927 82 13 1 4740 4821 364787191 364787271 7.760000e-09 73.1
50 TraesCS2A01G535000 chr2D 96.875 32 0 1 4742 4773 241170926 241170956 1.000000e-02 52.8
51 TraesCS2A01G535000 chr3A 90.090 555 30 9 1163 1707 92271290 92271829 0.000000e+00 697.0
52 TraesCS2A01G535000 chr3A 88.246 553 36 13 1164 1706 12114315 12114848 7.890000e-178 634.0
53 TraesCS2A01G535000 chr3A 85.921 554 30 13 1163 1706 12115341 12115856 1.060000e-151 547.0
54 TraesCS2A01G535000 chr3A 88.462 52 4 1 4219 4268 10690969 10690918 1.680000e-05 62.1
55 TraesCS2A01G535000 chr5D 86.855 601 49 12 1116 1706 504719630 504719050 0.000000e+00 645.0
56 TraesCS2A01G535000 chr5D 79.814 431 48 22 5078 5500 219761202 219761601 1.530000e-70 278.0
57 TraesCS2A01G535000 chr5D 93.220 118 7 1 1 117 27836949 27836832 7.440000e-39 172.0
58 TraesCS2A01G535000 chr1D 86.288 423 40 13 1273 1689 93293339 93292929 1.430000e-120 444.0
59 TraesCS2A01G535000 chr1D 86.091 417 41 11 1273 1684 93294450 93294046 3.090000e-117 433.0
60 TraesCS2A01G535000 chr1D 76.348 816 125 43 4743 5516 354524644 354523855 5.280000e-100 375.0
61 TraesCS2A01G535000 chr1D 77.644 662 104 26 4872 5514 355002925 355002289 4.110000e-96 363.0
62 TraesCS2A01G535000 chr1D 80.709 254 37 8 5242 5493 223801152 223801395 2.660000e-43 187.0
63 TraesCS2A01G535000 chr1B 78.726 691 79 36 180 811 121013879 121014560 3.130000e-107 399.0
64 TraesCS2A01G535000 chr1B 73.671 828 117 64 4738 5514 476814006 476813229 1.560000e-55 228.0
65 TraesCS2A01G535000 chr1B 73.977 611 112 35 4879 5453 476081717 476081118 2.640000e-48 204.0
66 TraesCS2A01G535000 chr1B 89.076 119 13 0 1588 1706 24245832 24245714 1.250000e-31 148.0
67 TraesCS2A01G535000 chr1B 88.235 119 14 0 1588 1706 24253739 24253621 5.830000e-30 143.0
68 TraesCS2A01G535000 chr1B 87.395 119 15 0 1588 1706 24241526 24241408 2.710000e-28 137.0
69 TraesCS2A01G535000 chr1B 76.804 194 32 9 5264 5449 234802630 234802442 4.600000e-16 97.1
70 TraesCS2A01G535000 chr1B 85.227 88 9 3 4221 4305 667091044 667091130 2.770000e-13 87.9
71 TraesCS2A01G535000 chr5A 79.118 431 51 25 5094 5514 293412832 293413233 1.540000e-65 261.0
72 TraesCS2A01G535000 chr5A 92.373 118 8 1 1 117 512769149 512769266 3.460000e-37 167.0
73 TraesCS2A01G535000 chr5A 85.897 78 8 2 4215 4290 581300950 581301026 4.640000e-11 80.5
74 TraesCS2A01G535000 chr3B 79.771 262 39 12 5242 5500 563649107 563648857 1.600000e-40 178.0
75 TraesCS2A01G535000 chr3B 96.970 33 1 0 4743 4775 598198702 598198734 7.810000e-04 56.5
76 TraesCS2A01G535000 chr3B 94.444 36 0 2 4742 4777 762932735 762932702 3.000000e-03 54.7
77 TraesCS2A01G535000 chr3D 91.406 128 9 2 1 126 7596777 7596650 2.070000e-39 174.0
78 TraesCS2A01G535000 chr4D 80.208 192 30 6 5253 5440 79226682 79226869 2.710000e-28 137.0
79 TraesCS2A01G535000 chr5B 86.885 122 14 2 1585 1705 16888486 16888606 9.760000e-28 135.0
80 TraesCS2A01G535000 chr5B 81.522 92 14 2 4215 4304 567154079 567154169 7.760000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G535000 chr2A 750192829 750198412 5583 False 4861.500000 5265 100.000000 1 5584 2 chr2A.!!$F2 5583
1 TraesCS2A01G535000 chr2A 778640228 778641410 1182 True 1917.000000 1917 95.886000 2744 3931 1 chr2A.!!$R2 1187
2 TraesCS2A01G535000 chr2A 734589966 734591157 1191 False 1905.000000 1905 95.420000 2734 3933 1 chr2A.!!$F1 1199
3 TraesCS2A01G535000 chr2A 749957635 749960132 2497 True 348.500000 538 88.481000 955 4690 2 chr2A.!!$R3 3735
4 TraesCS2A01G535000 chr1A 3435794 3436988 1194 False 2021.000000 2021 97.160000 2734 3930 1 chr1A.!!$F1 1196
5 TraesCS2A01G535000 chrUn 347917383 347918570 1187 False 1978.000000 1978 96.653000 2734 3928 1 chrUn.!!$F4 1194
6 TraesCS2A01G535000 chrUn 347995668 347996855 1187 True 1967.000000 1967 96.485000 2734 3928 1 chrUn.!!$R4 1194
7 TraesCS2A01G535000 chr6A 615704765 615705960 1195 True 1977.000000 1977 96.494000 2734 3930 1 chr6A.!!$R2 1196
8 TraesCS2A01G535000 chr7A 1428413 1429608 1195 False 1873.000000 1873 94.908000 2734 3931 1 chr7A.!!$F1 1197
9 TraesCS2A01G535000 chr7A 54905894 54907621 1727 True 481.500000 695 91.244500 1134 1706 2 chr7A.!!$R1 572
10 TraesCS2A01G535000 chr2B 773427867 773429062 1195 True 1873.000000 1873 94.912000 2734 3931 1 chr2B.!!$R1 1197
11 TraesCS2A01G535000 chr2B 756641243 756644458 3215 True 355.500000 553 90.949500 1008 4741 2 chr2B.!!$R2 3733
12 TraesCS2A01G535000 chr2B 757274669 757279542 4873 True 266.000000 313 83.950333 240 4741 3 chr2B.!!$R4 4501
13 TraesCS2A01G535000 chr2B 756710277 756713202 2925 True 261.800000 538 94.370000 985 4723 3 chr2B.!!$R3 3738
14 TraesCS2A01G535000 chr2B 757532553 757536563 4010 True 240.000000 287 82.056000 208 1116 2 chr2B.!!$R5 908
15 TraesCS2A01G535000 chr4A 36395179 36396364 1185 True 1849.000000 1849 94.781000 2745 3932 1 chr4A.!!$R1 1187
16 TraesCS2A01G535000 chr7D 563460489 563461063 574 True 667.000000 667 87.563000 1116 1706 1 chr7D.!!$R1 590
17 TraesCS2A01G535000 chr7D 498239873 498242824 2951 True 371.000000 944 88.876600 313 4208 5 chr7D.!!$R3 3895
18 TraesCS2A01G535000 chr7D 265383098 265384204 1106 True 325.666667 366 92.962667 1117 1706 3 chr7D.!!$R2 589
19 TraesCS2A01G535000 chr2D 619165879 619166904 1025 True 626.500000 769 88.904000 4406 5584 2 chr2D.!!$R2 1178
20 TraesCS2A01G535000 chr2D 619280805 619281939 1134 True 201.500000 303 90.765000 1008 4735 2 chr2D.!!$R3 3727
21 TraesCS2A01G535000 chr3A 92271290 92271829 539 False 697.000000 697 90.090000 1163 1707 1 chr3A.!!$F1 544
22 TraesCS2A01G535000 chr3A 12114315 12115856 1541 False 590.500000 634 87.083500 1163 1706 2 chr3A.!!$F2 543
23 TraesCS2A01G535000 chr5D 504719050 504719630 580 True 645.000000 645 86.855000 1116 1706 1 chr5D.!!$R2 590
24 TraesCS2A01G535000 chr1D 93292929 93294450 1521 True 438.500000 444 86.189500 1273 1689 2 chr1D.!!$R3 416
25 TraesCS2A01G535000 chr1D 354523855 354524644 789 True 375.000000 375 76.348000 4743 5516 1 chr1D.!!$R1 773
26 TraesCS2A01G535000 chr1D 355002289 355002925 636 True 363.000000 363 77.644000 4872 5514 1 chr1D.!!$R2 642
27 TraesCS2A01G535000 chr1B 121013879 121014560 681 False 399.000000 399 78.726000 180 811 1 chr1B.!!$F1 631
28 TraesCS2A01G535000 chr1B 476813229 476814006 777 True 228.000000 228 73.671000 4738 5514 1 chr1B.!!$R6 776
29 TraesCS2A01G535000 chr1B 476081118 476081717 599 True 204.000000 204 73.977000 4879 5453 1 chr1B.!!$R5 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
710 776 0.037605 ATGACGTCCCGTTGGAGAAC 60.038 55.0 14.12 0.0 42.85 3.01 F
1314 5926 0.035152 CCAGCCACTAACTGCATGGA 60.035 55.0 7.48 0.0 35.33 3.41 F
2397 13755 0.034059 CAGCTTCAGTGGAACCGAGT 59.966 55.0 0.00 0.0 37.80 4.18 F
2403 13761 0.966920 CAGTGGAACCGAGTAGTGGT 59.033 55.0 0.00 0.0 42.98 4.16 F
3384 14936 1.461911 GGGATCGGTCGGGAGGTTAG 61.462 65.0 0.00 0.0 0.00 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 10137 0.035739 TAAGCCCCAAACCTCGACAC 59.964 55.000 0.00 0.00 0.00 3.67 R
3255 14807 2.041819 GGGATCGGGGTGGAGAGT 60.042 66.667 0.00 0.00 0.00 3.24 R
3662 15215 1.274703 ATGGACCGTGCTCCAGGAAT 61.275 55.000 0.00 0.00 43.82 3.01 R
3932 15485 1.974236 AGTCTCCTGGTTCCACTGAAG 59.026 52.381 0.00 0.00 0.00 3.02 R
5205 18187 0.039180 TTCTACTGAGGCTCCACGGA 59.961 55.000 12.86 2.76 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.887264 CCTAACAGAGAATACCAGTATATCCT 57.113 38.462 0.00 0.00 0.00 3.24
26 27 9.976776 CCTAACAGAGAATACCAGTATATCCTA 57.023 37.037 0.00 0.00 0.00 2.94
30 31 8.808092 ACAGAGAATACCAGTATATCCTAAAGC 58.192 37.037 0.00 0.00 0.00 3.51
31 32 7.971168 CAGAGAATACCAGTATATCCTAAAGCG 59.029 40.741 0.00 0.00 0.00 4.68
32 33 7.889073 AGAGAATACCAGTATATCCTAAAGCGA 59.111 37.037 0.00 0.00 0.00 4.93
33 34 8.418597 AGAATACCAGTATATCCTAAAGCGAA 57.581 34.615 0.00 0.00 0.00 4.70
34 35 8.867097 AGAATACCAGTATATCCTAAAGCGAAA 58.133 33.333 0.00 0.00 0.00 3.46
35 36 9.654663 GAATACCAGTATATCCTAAAGCGAAAT 57.345 33.333 0.00 0.00 0.00 2.17
38 39 8.747538 ACCAGTATATCCTAAAGCGAAATTTT 57.252 30.769 0.00 0.00 0.00 1.82
39 40 8.621286 ACCAGTATATCCTAAAGCGAAATTTTG 58.379 33.333 0.59 0.59 0.00 2.44
40 41 8.836413 CCAGTATATCCTAAAGCGAAATTTTGA 58.164 33.333 9.75 0.00 0.00 2.69
46 47 8.862550 ATCCTAAAGCGAAATTTTGATTGATC 57.137 30.769 9.62 0.00 0.00 2.92
47 48 7.257722 TCCTAAAGCGAAATTTTGATTGATCC 58.742 34.615 9.62 0.00 0.00 3.36
48 49 7.035004 CCTAAAGCGAAATTTTGATTGATCCA 58.965 34.615 9.62 0.00 0.00 3.41
49 50 7.707893 CCTAAAGCGAAATTTTGATTGATCCAT 59.292 33.333 9.62 0.00 0.00 3.41
50 51 9.734620 CTAAAGCGAAATTTTGATTGATCCATA 57.265 29.630 9.62 0.00 0.00 2.74
52 53 9.603921 AAAGCGAAATTTTGATTGATCCATATT 57.396 25.926 9.62 0.00 0.00 1.28
53 54 8.583810 AGCGAAATTTTGATTGATCCATATTG 57.416 30.769 9.75 0.00 0.00 1.90
54 55 8.415553 AGCGAAATTTTGATTGATCCATATTGA 58.584 29.630 9.75 0.00 0.00 2.57
55 56 8.482429 GCGAAATTTTGATTGATCCATATTGAC 58.518 33.333 9.75 0.00 0.00 3.18
56 57 8.971321 CGAAATTTTGATTGATCCATATTGACC 58.029 33.333 0.00 0.00 0.00 4.02
57 58 9.820725 GAAATTTTGATTGATCCATATTGACCA 57.179 29.630 0.00 0.00 0.00 4.02
60 61 9.772973 ATTTTGATTGATCCATATTGACCATTG 57.227 29.630 0.00 0.00 0.00 2.82
61 62 6.904463 TGATTGATCCATATTGACCATTGG 57.096 37.500 0.00 0.00 0.00 3.16
62 63 6.612741 TGATTGATCCATATTGACCATTGGA 58.387 36.000 10.37 0.00 42.18 3.53
64 65 7.731235 TGATTGATCCATATTGACCATTGGATT 59.269 33.333 10.37 0.00 46.41 3.01
65 66 9.246670 GATTGATCCATATTGACCATTGGATTA 57.753 33.333 10.37 0.00 46.41 1.75
66 67 9.604569 ATTGATCCATATTGACCATTGGATTAA 57.395 29.630 10.37 9.52 46.41 1.40
67 68 8.408043 TGATCCATATTGACCATTGGATTAAC 57.592 34.615 10.37 0.00 46.41 2.01
68 69 8.226810 TGATCCATATTGACCATTGGATTAACT 58.773 33.333 10.37 0.00 46.41 2.24
69 70 9.739276 GATCCATATTGACCATTGGATTAACTA 57.261 33.333 10.37 0.00 46.41 2.24
71 72 9.928618 TCCATATTGACCATTGGATTAACTAAA 57.071 29.630 10.37 0.00 33.40 1.85
78 79 9.841295 TGACCATTGGATTAACTAAATACTACC 57.159 33.333 10.37 0.00 28.71 3.18
79 80 9.281371 GACCATTGGATTAACTAAATACTACCC 57.719 37.037 10.37 0.00 28.71 3.69
80 81 8.783903 ACCATTGGATTAACTAAATACTACCCA 58.216 33.333 10.37 0.00 28.71 4.51
81 82 9.063615 CCATTGGATTAACTAAATACTACCCAC 57.936 37.037 0.00 0.00 28.71 4.61
82 83 9.847224 CATTGGATTAACTAAATACTACCCACT 57.153 33.333 0.00 0.00 28.71 4.00
102 103 6.946340 CCACTATATTGGGTAGTATGATGCA 58.054 40.000 1.09 0.00 31.46 3.96
103 104 6.818644 CCACTATATTGGGTAGTATGATGCAC 59.181 42.308 1.09 0.00 31.46 4.57
104 105 6.818644 CACTATATTGGGTAGTATGATGCACC 59.181 42.308 0.00 0.00 31.46 5.01
105 106 5.841267 ATATTGGGTAGTATGATGCACCA 57.159 39.130 0.00 0.00 32.42 4.17
106 107 4.729552 ATTGGGTAGTATGATGCACCAT 57.270 40.909 0.00 0.00 32.42 3.55
107 108 5.841267 ATTGGGTAGTATGATGCACCATA 57.159 39.130 0.00 0.00 32.42 2.74
108 109 5.638530 TTGGGTAGTATGATGCACCATAA 57.361 39.130 1.17 0.00 31.53 1.90
109 110 5.638530 TGGGTAGTATGATGCACCATAAA 57.361 39.130 1.17 0.00 31.53 1.40
110 111 6.007485 TGGGTAGTATGATGCACCATAAAA 57.993 37.500 1.17 0.00 31.53 1.52
111 112 6.427441 TGGGTAGTATGATGCACCATAAAAA 58.573 36.000 1.17 0.00 31.53 1.94
132 133 6.409524 AAAATCTCAAGCAAAACTCATGGA 57.590 33.333 0.00 0.00 0.00 3.41
133 134 6.409524 AAATCTCAAGCAAAACTCATGGAA 57.590 33.333 0.00 0.00 0.00 3.53
134 135 5.640189 ATCTCAAGCAAAACTCATGGAAG 57.360 39.130 0.00 0.00 0.00 3.46
135 136 4.464008 TCTCAAGCAAAACTCATGGAAGT 58.536 39.130 0.00 0.00 0.00 3.01
136 137 4.276678 TCTCAAGCAAAACTCATGGAAGTG 59.723 41.667 0.00 0.00 0.00 3.16
137 138 4.206375 TCAAGCAAAACTCATGGAAGTGA 58.794 39.130 0.00 0.00 0.00 3.41
138 139 4.036734 TCAAGCAAAACTCATGGAAGTGAC 59.963 41.667 0.00 0.00 0.00 3.67
139 140 3.554934 AGCAAAACTCATGGAAGTGACA 58.445 40.909 0.00 0.00 0.00 3.58
140 141 4.147321 AGCAAAACTCATGGAAGTGACAT 58.853 39.130 0.00 0.00 0.00 3.06
141 142 4.217118 AGCAAAACTCATGGAAGTGACATC 59.783 41.667 0.00 0.00 0.00 3.06
142 143 4.715896 CAAAACTCATGGAAGTGACATCG 58.284 43.478 0.00 0.00 0.00 3.84
143 144 3.685139 AACTCATGGAAGTGACATCGT 57.315 42.857 0.00 0.00 0.00 3.73
144 145 3.238108 ACTCATGGAAGTGACATCGTC 57.762 47.619 0.00 0.00 0.00 4.20
145 146 2.093973 ACTCATGGAAGTGACATCGTCC 60.094 50.000 0.00 4.05 36.71 4.79
146 147 1.135112 TCATGGAAGTGACATCGTCCG 60.135 52.381 0.00 0.00 38.48 4.79
147 148 0.175760 ATGGAAGTGACATCGTCCGG 59.824 55.000 0.00 0.00 38.48 5.14
148 149 1.810030 GGAAGTGACATCGTCCGGC 60.810 63.158 0.00 0.00 0.00 6.13
149 150 1.810030 GAAGTGACATCGTCCGGCC 60.810 63.158 0.00 0.00 0.00 6.13
150 151 3.642778 AAGTGACATCGTCCGGCCG 62.643 63.158 21.04 21.04 0.00 6.13
153 154 4.570663 GACATCGTCCGGCCGGAG 62.571 72.222 46.28 35.46 46.16 4.63
165 166 3.420482 CCGGAGCCCTTCCCCATT 61.420 66.667 0.00 0.00 43.63 3.16
166 167 2.193248 CGGAGCCCTTCCCCATTC 59.807 66.667 0.00 0.00 43.63 2.67
167 168 2.603580 GGAGCCCTTCCCCATTCC 59.396 66.667 0.00 0.00 40.37 3.01
168 169 2.009302 GGAGCCCTTCCCCATTCCT 61.009 63.158 0.00 0.00 40.37 3.36
169 170 1.534203 GAGCCCTTCCCCATTCCTC 59.466 63.158 0.00 0.00 0.00 3.71
170 171 1.230281 AGCCCTTCCCCATTCCTCA 60.230 57.895 0.00 0.00 0.00 3.86
171 172 0.628668 AGCCCTTCCCCATTCCTCAT 60.629 55.000 0.00 0.00 0.00 2.90
172 173 0.178978 GCCCTTCCCCATTCCTCATC 60.179 60.000 0.00 0.00 0.00 2.92
173 174 1.225373 CCCTTCCCCATTCCTCATCA 58.775 55.000 0.00 0.00 0.00 3.07
174 175 1.144503 CCCTTCCCCATTCCTCATCAG 59.855 57.143 0.00 0.00 0.00 2.90
175 176 1.849039 CCTTCCCCATTCCTCATCAGT 59.151 52.381 0.00 0.00 0.00 3.41
176 177 2.243221 CCTTCCCCATTCCTCATCAGTT 59.757 50.000 0.00 0.00 0.00 3.16
177 178 3.549794 CTTCCCCATTCCTCATCAGTTC 58.450 50.000 0.00 0.00 0.00 3.01
178 179 2.561187 TCCCCATTCCTCATCAGTTCA 58.439 47.619 0.00 0.00 0.00 3.18
199 200 3.677284 CTGCAGCACAGGCCGAGAT 62.677 63.158 0.00 0.00 43.19 2.75
200 201 2.437359 GCAGCACAGGCCGAGATT 60.437 61.111 0.00 0.00 42.56 2.40
204 205 1.883084 GCACAGGCCGAGATTACCG 60.883 63.158 0.00 0.00 0.00 4.02
224 225 4.652421 ACCGCTACCAAGGTTATCTTATCA 59.348 41.667 0.00 0.00 37.49 2.15
230 231 4.960469 ACCAAGGTTATCTTATCAGGACGA 59.040 41.667 0.00 0.00 33.68 4.20
233 234 4.215908 AGGTTATCTTATCAGGACGAGCA 58.784 43.478 0.00 0.00 0.00 4.26
258 259 2.126346 GCCGCATGCTGTGAAACC 60.126 61.111 17.13 0.00 36.87 3.27
261 262 1.236616 CCGCATGCTGTGAAACCAGA 61.237 55.000 17.13 0.00 34.36 3.86
262 263 0.592637 CGCATGCTGTGAAACCAGAA 59.407 50.000 17.13 0.00 34.36 3.02
263 264 1.001487 CGCATGCTGTGAAACCAGAAA 60.001 47.619 17.13 0.00 34.36 2.52
294 301 2.743664 CCTTTGACATGTCATTCTGCGA 59.256 45.455 28.32 9.66 39.64 5.10
301 308 3.699538 ACATGTCATTCTGCGAGTACCTA 59.300 43.478 0.00 0.00 0.00 3.08
367 378 9.838339 AAGATTACTTACATTCATCGGAGATTT 57.162 29.630 0.00 0.00 36.38 2.17
390 402 7.403312 TTTTTCAAATGAGAACTGAAGTGGA 57.597 32.000 0.00 0.00 31.11 4.02
406 418 7.174253 ACTGAAGTGGAGATCTATCGATACTTC 59.826 40.741 19.46 19.46 40.60 3.01
410 422 4.292571 TGGAGATCTATCGATACTTCCCCT 59.707 45.833 0.00 0.00 29.94 4.79
473 485 2.787994 CCATCAAACACTCTCCAAGCT 58.212 47.619 0.00 0.00 0.00 3.74
505 517 1.541233 CCCGCACTTCTCATACATCCC 60.541 57.143 0.00 0.00 0.00 3.85
527 539 3.749735 GAGAGCTGAGCCGACGAGC 62.750 68.421 0.00 0.00 0.00 5.03
532 544 2.824489 TGAGCCGACGAGCGATCT 60.824 61.111 0.00 1.57 44.57 2.75
542 554 1.066303 ACGAGCGATCTCACCTCAATC 59.934 52.381 0.00 0.00 39.30 2.67
571 600 0.110486 AACCACCTACCAAGCACCAG 59.890 55.000 0.00 0.00 0.00 4.00
578 607 1.541310 TACCAAGCACCAGGTCTCCG 61.541 60.000 0.00 0.00 39.31 4.63
580 609 3.322466 AAGCACCAGGTCTCCGGG 61.322 66.667 0.00 3.57 44.45 5.73
585 614 2.283809 CCAGGTCTCCGGGATCCT 59.716 66.667 12.58 13.08 41.43 3.24
591 620 2.202932 CTCCGGGATCCTTGCACG 60.203 66.667 12.58 6.02 0.00 5.34
594 623 4.776322 CGGGATCCTTGCACGCCA 62.776 66.667 12.58 0.00 0.00 5.69
604 633 4.666532 GCACGCCACAAGCACGAC 62.667 66.667 0.00 0.00 44.04 4.34
673 710 0.170339 CGCCTGTGTCACATCGTCTA 59.830 55.000 6.03 0.00 0.00 2.59
706 772 0.611062 AGAGATGACGTCCCGTTGGA 60.611 55.000 14.12 0.00 41.37 3.53
710 776 0.037605 ATGACGTCCCGTTGGAGAAC 60.038 55.000 14.12 0.00 42.85 3.01
724 790 2.011540 GAGAACTCCATCGAACACCC 57.988 55.000 0.00 0.00 0.00 4.61
726 792 2.758979 GAGAACTCCATCGAACACCCTA 59.241 50.000 0.00 0.00 0.00 3.53
729 795 0.527817 CTCCATCGAACACCCTACGC 60.528 60.000 0.00 0.00 0.00 4.42
730 796 1.876714 CCATCGAACACCCTACGCG 60.877 63.158 3.53 3.53 0.00 6.01
732 798 2.997075 ATCGAACACCCTACGCGCA 61.997 57.895 5.73 0.00 0.00 6.09
767 833 0.981183 AGGTTGGAGTACATGGCGAA 59.019 50.000 0.00 0.00 0.00 4.70
779 845 1.999634 ATGGCGAAGAGGGAATGGGG 62.000 60.000 0.00 0.00 0.00 4.96
780 846 2.680370 GGCGAAGAGGGAATGGGGT 61.680 63.158 0.00 0.00 0.00 4.95
781 847 1.303282 GCGAAGAGGGAATGGGGTT 59.697 57.895 0.00 0.00 0.00 4.11
783 849 0.394352 CGAAGAGGGAATGGGGTTGG 60.394 60.000 0.00 0.00 0.00 3.77
784 850 0.999712 GAAGAGGGAATGGGGTTGGA 59.000 55.000 0.00 0.00 0.00 3.53
785 851 1.002857 AAGAGGGAATGGGGTTGGAG 58.997 55.000 0.00 0.00 0.00 3.86
786 852 0.178831 AGAGGGAATGGGGTTGGAGT 60.179 55.000 0.00 0.00 0.00 3.85
787 853 1.082194 AGAGGGAATGGGGTTGGAGTA 59.918 52.381 0.00 0.00 0.00 2.59
788 854 1.212195 GAGGGAATGGGGTTGGAGTAC 59.788 57.143 0.00 0.00 0.00 2.73
789 855 0.996583 GGGAATGGGGTTGGAGTACA 59.003 55.000 0.00 0.00 0.00 2.90
829 924 3.984193 GAAGACAGGCGCAGGGCAT 62.984 63.158 10.83 0.02 46.16 4.40
837 932 4.827087 CGCAGGGCATCGAGCTGT 62.827 66.667 0.00 0.00 44.79 4.40
975 4109 7.360361 AGCTTTACTTCACTTTGGAAAATACG 58.640 34.615 0.00 0.00 0.00 3.06
976 4110 7.012989 AGCTTTACTTCACTTTGGAAAATACGT 59.987 33.333 0.00 0.00 0.00 3.57
1129 4555 1.930567 CTGCTTTGTTGTTGCAGCTT 58.069 45.000 1.17 0.00 45.76 3.74
1130 4556 2.273557 CTGCTTTGTTGTTGCAGCTTT 58.726 42.857 1.17 0.00 45.76 3.51
1143 4569 3.098377 TGCAGCTTTCTCTCTCTCTCAT 58.902 45.455 0.00 0.00 0.00 2.90
1151 4577 5.559427 TTCTCTCTCTCTCATTCAAGACG 57.441 43.478 0.00 0.00 0.00 4.18
1284 5892 1.146041 GACTCACACCAGGCACACA 59.854 57.895 0.00 0.00 0.00 3.72
1285 5893 1.153168 ACTCACACCAGGCACACAC 60.153 57.895 0.00 0.00 0.00 3.82
1286 5894 1.146930 CTCACACCAGGCACACACT 59.853 57.895 0.00 0.00 0.00 3.55
1287 5895 0.882042 CTCACACCAGGCACACACTC 60.882 60.000 0.00 0.00 0.00 3.51
1288 5896 1.153188 CACACCAGGCACACACTCA 60.153 57.895 0.00 0.00 0.00 3.41
1289 5897 1.153168 ACACCAGGCACACACTCAC 60.153 57.895 0.00 0.00 0.00 3.51
1290 5898 2.108976 ACCAGGCACACACTCACG 59.891 61.111 0.00 0.00 0.00 4.35
1291 5899 3.349006 CCAGGCACACACTCACGC 61.349 66.667 0.00 0.00 0.00 5.34
1292 5900 2.588596 CAGGCACACACTCACGCA 60.589 61.111 0.00 0.00 0.00 5.24
1293 5901 2.588877 AGGCACACACTCACGCAC 60.589 61.111 0.00 0.00 0.00 5.34
1294 5902 4.000557 GGCACACACTCACGCACG 62.001 66.667 0.00 0.00 0.00 5.34
1295 5903 4.649954 GCACACACTCACGCACGC 62.650 66.667 0.00 0.00 0.00 5.34
1314 5926 0.035152 CCAGCCACTAACTGCATGGA 60.035 55.000 7.48 0.00 35.33 3.41
1342 5954 0.878523 ACGCATGCACTAACACACGT 60.879 50.000 19.57 0.00 31.71 4.49
1395 6007 1.076485 GCCCATGCTCCTGGTGATT 60.076 57.895 0.00 0.00 34.23 2.57
1445 7168 1.105457 TCCGTAATACCTGGTCACCG 58.895 55.000 0.63 1.76 0.00 4.94
1540 7284 1.748879 GCCCATACACACACGCCAT 60.749 57.895 0.00 0.00 0.00 4.40
1572 7316 3.710044 CATGTCATGCTCGTCCCG 58.290 61.111 0.00 0.00 0.00 5.14
1573 7317 2.202932 ATGTCATGCTCGTCCCGC 60.203 61.111 0.00 0.00 0.00 6.13
1574 7318 4.794439 TGTCATGCTCGTCCCGCG 62.794 66.667 0.00 0.00 43.01 6.46
1689 8451 4.508128 AGCCCGACCACATACGCG 62.508 66.667 3.53 3.53 0.00 6.01
1707 8469 1.202290 GCGGTGGCTTATTCCAACATG 60.202 52.381 0.00 0.00 44.01 3.21
1709 8471 2.102578 GGTGGCTTATTCCAACATGCT 58.897 47.619 0.00 0.00 43.29 3.79
1710 8472 2.497273 GGTGGCTTATTCCAACATGCTT 59.503 45.455 0.00 0.00 43.29 3.91
1748 9951 1.392710 CCAGGTACCCTCGGCTACAG 61.393 65.000 8.74 0.00 0.00 2.74
1783 9999 1.202769 CCTTCCGTCCTTTACCCCCA 61.203 60.000 0.00 0.00 0.00 4.96
1886 10137 5.826737 AGATTTCTCCCTGTATTGCTTGATG 59.173 40.000 0.00 0.00 0.00 3.07
2093 10770 6.768078 ACTAAATAGAACGTTTGGCATTACG 58.232 36.000 17.60 17.60 43.08 3.18
2108 10785 4.390909 GGCATTACGGCATACTATACCAAC 59.609 45.833 0.00 0.00 40.76 3.77
2118 10795 6.204882 GGCATACTATACCAACAGGAAATCAC 59.795 42.308 0.00 0.00 0.00 3.06
2299 13657 7.228507 TCACACTATTGAACTGTGTTTTGCTAT 59.771 33.333 2.90 0.00 42.19 2.97
2320 13678 7.282224 TGCTATAAAAACACACACTCTTGAACT 59.718 33.333 0.00 0.00 0.00 3.01
2394 13752 0.320374 TACCAGCTTCAGTGGAACCG 59.680 55.000 0.00 0.00 37.80 4.44
2395 13753 1.371183 CCAGCTTCAGTGGAACCGA 59.629 57.895 0.00 0.00 37.80 4.69
2396 13754 0.671781 CCAGCTTCAGTGGAACCGAG 60.672 60.000 0.00 0.00 37.80 4.63
2397 13755 0.034059 CAGCTTCAGTGGAACCGAGT 59.966 55.000 0.00 0.00 37.80 4.18
2398 13756 1.272490 CAGCTTCAGTGGAACCGAGTA 59.728 52.381 0.00 0.00 37.80 2.59
2399 13757 1.546476 AGCTTCAGTGGAACCGAGTAG 59.454 52.381 0.00 0.00 37.80 2.57
2400 13758 1.272769 GCTTCAGTGGAACCGAGTAGT 59.727 52.381 0.00 0.00 37.80 2.73
2401 13759 2.927014 GCTTCAGTGGAACCGAGTAGTG 60.927 54.545 0.00 0.00 37.80 2.74
2402 13760 1.254026 TCAGTGGAACCGAGTAGTGG 58.746 55.000 0.00 0.00 37.80 4.00
2403 13761 0.966920 CAGTGGAACCGAGTAGTGGT 59.033 55.000 0.00 0.00 42.98 4.16
2404 13762 2.165167 CAGTGGAACCGAGTAGTGGTA 58.835 52.381 0.00 0.00 39.29 3.25
2405 13763 2.163815 CAGTGGAACCGAGTAGTGGTAG 59.836 54.545 0.00 0.00 39.29 3.18
2406 13764 2.040813 AGTGGAACCGAGTAGTGGTAGA 59.959 50.000 0.00 0.00 39.29 2.59
2407 13765 2.821969 GTGGAACCGAGTAGTGGTAGAA 59.178 50.000 0.00 0.00 39.29 2.10
2408 13766 3.087031 TGGAACCGAGTAGTGGTAGAAG 58.913 50.000 0.00 0.00 39.29 2.85
2409 13767 3.087781 GGAACCGAGTAGTGGTAGAAGT 58.912 50.000 0.00 0.00 39.29 3.01
2410 13768 4.263462 TGGAACCGAGTAGTGGTAGAAGTA 60.263 45.833 0.00 0.00 39.29 2.24
2411 13769 4.335037 GGAACCGAGTAGTGGTAGAAGTAG 59.665 50.000 0.00 0.00 39.29 2.57
2412 13770 3.277715 ACCGAGTAGTGGTAGAAGTAGC 58.722 50.000 0.00 0.00 38.15 3.58
2413 13771 2.287373 CCGAGTAGTGGTAGAAGTAGCG 59.713 54.545 0.00 0.00 0.00 4.26
3130 14682 1.671901 GGCTAGCTTCGTCTGGCTCT 61.672 60.000 15.72 0.00 40.00 4.09
3233 14785 2.476320 GGCGCTGCTTTCCTCCATC 61.476 63.158 7.64 0.00 0.00 3.51
3255 14807 4.392166 TGCAGCCGAGGTCCCCTA 62.392 66.667 0.00 0.00 31.76 3.53
3384 14936 1.461911 GGGATCGGTCGGGAGGTTAG 61.462 65.000 0.00 0.00 0.00 2.34
3490 15042 3.015312 GCCGGCGAGGTATATCCCC 62.015 68.421 12.58 0.00 43.70 4.81
3662 15215 7.369551 TGTTGGTTCCTTTCTTCTCTAAGTA 57.630 36.000 0.00 0.00 34.13 2.24
3752 15305 2.103373 GATCCTAGTGTGGAGTGCTCA 58.897 52.381 1.41 0.00 39.78 4.26
3831 15384 2.145536 GTGTTCCCCGTTGTATCGTTT 58.854 47.619 0.00 0.00 0.00 3.60
3907 15460 1.632589 AATTCAAAGCCGGGCTCTTT 58.367 45.000 24.08 11.39 38.25 2.52
3958 15511 5.103473 TCAGTGGAACCAGGAGACTATATCT 60.103 44.000 0.00 0.00 40.21 1.98
4172 16367 8.683550 TGATCTATACTTGTTACAAGTTGACG 57.316 34.615 31.53 18.67 0.00 4.35
4232 16502 9.453572 TTTTCTAGATTTACTACTCCGTCTGTA 57.546 33.333 0.00 0.00 0.00 2.74
4233 16503 9.453572 TTTCTAGATTTACTACTCCGTCTGTAA 57.546 33.333 0.00 0.00 0.00 2.41
4234 16504 8.430801 TCTAGATTTACTACTCCGTCTGTAAC 57.569 38.462 0.00 0.00 0.00 2.50
4235 16505 8.263640 TCTAGATTTACTACTCCGTCTGTAACT 58.736 37.037 0.00 0.00 0.00 2.24
4236 16506 7.700022 AGATTTACTACTCCGTCTGTAACTT 57.300 36.000 0.00 0.00 0.00 2.66
4266 16536 6.833342 AGATGTTTTTGCAGTTCAATGAAC 57.167 33.333 17.67 17.67 42.25 3.18
4299 16602 8.391106 CAACATCTTACATTAAGTTACAGAGGC 58.609 37.037 0.00 0.00 37.10 4.70
4306 16609 6.947464 ACATTAAGTTACAGAGGCAGTATGT 58.053 36.000 0.00 0.00 39.31 2.29
4315 16618 4.997395 ACAGAGGCAGTATGTTTTAGTGTG 59.003 41.667 0.00 0.00 39.31 3.82
4346 16680 2.235016 TGGGTTTTAGGACACATGCAC 58.765 47.619 0.00 0.00 0.00 4.57
4367 16701 5.284079 CACAAATTGCTACCTATTGATGCC 58.716 41.667 0.00 0.00 0.00 4.40
4376 16711 5.300286 GCTACCTATTGATGCCAAGACATTT 59.700 40.000 0.00 0.00 35.48 2.32
4379 16714 6.426587 ACCTATTGATGCCAAGACATTTACT 58.573 36.000 0.00 0.00 35.48 2.24
4507 17432 1.771854 TGCACCCCTTCAACTAAGTGA 59.228 47.619 0.00 0.00 32.89 3.41
4553 17478 5.920273 AGTTCTGGCAAACAATGATTTTACG 59.080 36.000 12.71 0.00 0.00 3.18
4637 17570 6.043854 TGGCCCTTGTTTACATAATTTTCC 57.956 37.500 0.00 0.00 0.00 3.13
4672 17613 6.071728 CCTGCCAAATTTATCAAAGACAGTCT 60.072 38.462 0.00 0.00 0.00 3.24
4823 17764 4.496336 GCTGGCGCCCCTCAATCT 62.496 66.667 26.77 0.00 0.00 2.40
4831 17788 1.695597 CCCCTCAATCTGGCTCCCT 60.696 63.158 0.00 0.00 0.00 4.20
4916 17873 0.729116 TCCGATCGTACGACAAGACC 59.271 55.000 22.14 4.98 35.09 3.85
4918 17875 1.065102 CCGATCGTACGACAAGACCAT 59.935 52.381 22.14 0.98 35.09 3.55
4919 17876 2.479049 CCGATCGTACGACAAGACCATT 60.479 50.000 22.14 0.12 35.09 3.16
4929 17886 1.909302 ACAAGACCATTCTCCCACGAT 59.091 47.619 0.00 0.00 0.00 3.73
4951 17912 3.126879 GCGCATGGCTACAGTGCA 61.127 61.111 0.30 0.00 38.75 4.57
4959 17920 1.961277 GCTACAGTGCAGCCGTGTT 60.961 57.895 3.76 0.00 32.68 3.32
4970 17931 4.351938 CCGTGTTCGCTGACCGGA 62.352 66.667 9.46 0.00 36.26 5.14
4972 17933 2.338984 GTGTTCGCTGACCGGAGT 59.661 61.111 9.46 0.00 37.59 3.85
4973 17934 2.022129 GTGTTCGCTGACCGGAGTG 61.022 63.158 9.46 2.08 37.59 3.51
4974 17935 3.112709 GTTCGCTGACCGGAGTGC 61.113 66.667 9.46 7.93 37.59 4.40
4997 17958 1.516386 CGTCAACGTAGCTCGCCAT 60.516 57.895 0.00 0.00 44.19 4.40
5050 18011 1.518903 GGGAGGTGACAAGCAACAGC 61.519 60.000 0.00 0.00 36.36 4.40
5191 18173 1.342496 CGAGAGCCTTCCATGCATAGA 59.658 52.381 0.00 0.00 0.00 1.98
5194 18176 2.368221 AGAGCCTTCCATGCATAGAGTC 59.632 50.000 0.00 0.00 0.00 3.36
5205 18187 2.038659 GCATAGAGTCTGGCCTTCTCT 58.961 52.381 21.55 21.55 40.85 3.10
5262 18265 0.530744 TACGCACGAGAGGCAAGATT 59.469 50.000 0.00 0.00 0.00 2.40
5293 18296 1.081174 TCCTTCTTCCTCCTCCACCAT 59.919 52.381 0.00 0.00 0.00 3.55
5330 18333 3.263937 ACCGTTATAACCCTTGTGCCTAA 59.736 43.478 10.01 0.00 0.00 2.69
5331 18334 4.080186 ACCGTTATAACCCTTGTGCCTAAT 60.080 41.667 10.01 0.00 0.00 1.73
5342 18345 5.476945 CCCTTGTGCCTAATATACCATTTCC 59.523 44.000 0.00 0.00 0.00 3.13
5347 18350 5.534654 GTGCCTAATATACCATTTCCAGCAA 59.465 40.000 0.00 0.00 0.00 3.91
5352 18355 8.517878 CCTAATATACCATTTCCAGCAAGATTG 58.482 37.037 0.00 0.00 0.00 2.67
5444 18489 4.003788 CTCCGGAACCCACTGCGT 62.004 66.667 5.23 0.00 0.00 5.24
5445 18490 3.934391 CTCCGGAACCCACTGCGTC 62.934 68.421 5.23 0.00 0.00 5.19
5447 18492 4.003788 CGGAACCCACTGCGTCCT 62.004 66.667 0.00 0.00 0.00 3.85
5448 18493 2.047179 GGAACCCACTGCGTCCTC 60.047 66.667 0.00 0.00 0.00 3.71
5449 18494 2.741092 GAACCCACTGCGTCCTCA 59.259 61.111 0.00 0.00 0.00 3.86
5450 18495 1.296715 GAACCCACTGCGTCCTCAT 59.703 57.895 0.00 0.00 0.00 2.90
5451 18496 1.003355 AACCCACTGCGTCCTCATG 60.003 57.895 0.00 0.00 0.00 3.07
5452 18497 2.821366 CCCACTGCGTCCTCATGC 60.821 66.667 0.00 0.00 34.78 4.06
5453 18498 2.046988 CCACTGCGTCCTCATGCA 60.047 61.111 0.00 0.00 42.59 3.96
5526 18589 4.883585 CACCATGACAGGTAGTTATGCAAT 59.116 41.667 0.00 0.00 41.50 3.56
5565 18628 3.201290 CGAAGCAAAGGACTAGATGCAT 58.799 45.455 0.00 0.00 41.18 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.887264 AGGATATACTGGTATTCTCTGTTAGG 57.113 38.462 0.00 0.00 0.00 2.69
5 6 7.971168 CGCTTTAGGATATACTGGTATTCTCTG 59.029 40.741 0.00 0.00 0.00 3.35
6 7 7.889073 TCGCTTTAGGATATACTGGTATTCTCT 59.111 37.037 0.00 0.00 0.00 3.10
7 8 8.053026 TCGCTTTAGGATATACTGGTATTCTC 57.947 38.462 0.00 0.00 0.00 2.87
8 9 8.418597 TTCGCTTTAGGATATACTGGTATTCT 57.581 34.615 0.00 0.00 0.00 2.40
9 10 9.654663 ATTTCGCTTTAGGATATACTGGTATTC 57.345 33.333 0.00 0.00 0.00 1.75
12 13 9.841295 AAAATTTCGCTTTAGGATATACTGGTA 57.159 29.630 0.00 0.00 0.00 3.25
13 14 8.621286 CAAAATTTCGCTTTAGGATATACTGGT 58.379 33.333 0.00 0.00 0.00 4.00
14 15 8.836413 TCAAAATTTCGCTTTAGGATATACTGG 58.164 33.333 0.00 0.00 0.00 4.00
20 21 9.950680 GATCAATCAAAATTTCGCTTTAGGATA 57.049 29.630 0.00 0.00 0.00 2.59
21 22 7.922811 GGATCAATCAAAATTTCGCTTTAGGAT 59.077 33.333 0.00 0.00 0.00 3.24
22 23 7.093988 TGGATCAATCAAAATTTCGCTTTAGGA 60.094 33.333 0.00 0.00 0.00 2.94
23 24 7.035004 TGGATCAATCAAAATTTCGCTTTAGG 58.965 34.615 0.00 0.00 0.00 2.69
24 25 8.638685 ATGGATCAATCAAAATTTCGCTTTAG 57.361 30.769 0.00 0.00 0.00 1.85
26 27 9.603921 AATATGGATCAATCAAAATTTCGCTTT 57.396 25.926 0.00 0.00 0.00 3.51
27 28 9.037737 CAATATGGATCAATCAAAATTTCGCTT 57.962 29.630 0.00 0.00 0.00 4.68
28 29 8.415553 TCAATATGGATCAATCAAAATTTCGCT 58.584 29.630 0.00 0.00 0.00 4.93
29 30 8.482429 GTCAATATGGATCAATCAAAATTTCGC 58.518 33.333 0.00 0.00 0.00 4.70
30 31 8.971321 GGTCAATATGGATCAATCAAAATTTCG 58.029 33.333 0.00 0.00 0.00 3.46
31 32 9.820725 TGGTCAATATGGATCAATCAAAATTTC 57.179 29.630 0.00 0.00 0.00 2.17
34 35 9.772973 CAATGGTCAATATGGATCAATCAAAAT 57.227 29.630 0.00 0.00 30.43 1.82
35 36 8.205512 CCAATGGTCAATATGGATCAATCAAAA 58.794 33.333 0.00 0.00 34.82 2.44
36 37 7.564292 TCCAATGGTCAATATGGATCAATCAAA 59.436 33.333 0.00 0.00 37.05 2.69
37 38 7.068061 TCCAATGGTCAATATGGATCAATCAA 58.932 34.615 0.00 0.00 37.05 2.57
38 39 6.612741 TCCAATGGTCAATATGGATCAATCA 58.387 36.000 0.00 0.00 37.05 2.57
45 46 9.928618 TTTAGTTAATCCAATGGTCAATATGGA 57.071 29.630 0.00 0.00 45.42 3.41
52 53 9.841295 GGTAGTATTTAGTTAATCCAATGGTCA 57.159 33.333 0.00 0.00 0.00 4.02
53 54 9.281371 GGGTAGTATTTAGTTAATCCAATGGTC 57.719 37.037 0.00 0.00 0.00 4.02
54 55 8.783903 TGGGTAGTATTTAGTTAATCCAATGGT 58.216 33.333 0.00 0.00 0.00 3.55
55 56 9.063615 GTGGGTAGTATTTAGTTAATCCAATGG 57.936 37.037 0.00 0.00 0.00 3.16
56 57 9.847224 AGTGGGTAGTATTTAGTTAATCCAATG 57.153 33.333 0.00 0.00 0.00 2.82
78 79 6.818644 GTGCATCATACTACCCAATATAGTGG 59.181 42.308 12.37 12.37 38.51 4.00
79 80 6.818644 GGTGCATCATACTACCCAATATAGTG 59.181 42.308 0.00 0.00 34.66 2.74
80 81 6.500400 TGGTGCATCATACTACCCAATATAGT 59.500 38.462 0.00 0.00 36.79 2.12
81 82 6.946340 TGGTGCATCATACTACCCAATATAG 58.054 40.000 0.00 0.00 32.20 1.31
82 83 6.943899 TGGTGCATCATACTACCCAATATA 57.056 37.500 0.00 0.00 32.20 0.86
83 84 5.841267 TGGTGCATCATACTACCCAATAT 57.159 39.130 0.00 0.00 32.20 1.28
84 85 5.841267 ATGGTGCATCATACTACCCAATA 57.159 39.130 11.72 0.00 32.20 1.90
85 86 4.729552 ATGGTGCATCATACTACCCAAT 57.270 40.909 11.72 0.00 32.20 3.16
86 87 5.638530 TTATGGTGCATCATACTACCCAA 57.361 39.130 19.32 1.97 32.20 4.12
87 88 5.638530 TTTATGGTGCATCATACTACCCA 57.361 39.130 19.32 4.15 32.20 4.51
88 89 6.952773 TTTTTATGGTGCATCATACTACCC 57.047 37.500 19.32 0.00 32.20 3.69
108 109 6.819284 TCCATGAGTTTTGCTTGAGATTTTT 58.181 32.000 0.00 0.00 0.00 1.94
109 110 6.409524 TCCATGAGTTTTGCTTGAGATTTT 57.590 33.333 0.00 0.00 0.00 1.82
110 111 6.041296 ACTTCCATGAGTTTTGCTTGAGATTT 59.959 34.615 0.00 0.00 0.00 2.17
111 112 5.537674 ACTTCCATGAGTTTTGCTTGAGATT 59.462 36.000 0.00 0.00 0.00 2.40
112 113 5.048224 CACTTCCATGAGTTTTGCTTGAGAT 60.048 40.000 0.00 0.00 0.00 2.75
113 114 4.276678 CACTTCCATGAGTTTTGCTTGAGA 59.723 41.667 0.00 0.00 0.00 3.27
114 115 4.276678 TCACTTCCATGAGTTTTGCTTGAG 59.723 41.667 0.00 0.00 0.00 3.02
115 116 4.036734 GTCACTTCCATGAGTTTTGCTTGA 59.963 41.667 0.00 0.00 0.00 3.02
116 117 4.202040 TGTCACTTCCATGAGTTTTGCTTG 60.202 41.667 0.00 0.00 0.00 4.01
117 118 3.953612 TGTCACTTCCATGAGTTTTGCTT 59.046 39.130 0.00 0.00 0.00 3.91
118 119 3.554934 TGTCACTTCCATGAGTTTTGCT 58.445 40.909 0.00 0.00 0.00 3.91
119 120 3.988379 TGTCACTTCCATGAGTTTTGC 57.012 42.857 0.00 0.00 0.00 3.68
120 121 4.214119 ACGATGTCACTTCCATGAGTTTTG 59.786 41.667 0.00 0.00 0.00 2.44
121 122 4.389374 ACGATGTCACTTCCATGAGTTTT 58.611 39.130 0.00 0.00 0.00 2.43
122 123 3.997021 GACGATGTCACTTCCATGAGTTT 59.003 43.478 0.00 0.00 32.09 2.66
123 124 3.589988 GACGATGTCACTTCCATGAGTT 58.410 45.455 0.00 0.00 32.09 3.01
124 125 2.093973 GGACGATGTCACTTCCATGAGT 60.094 50.000 0.00 0.00 33.68 3.41
125 126 2.544685 GGACGATGTCACTTCCATGAG 58.455 52.381 0.00 0.00 33.68 2.90
126 127 1.135112 CGGACGATGTCACTTCCATGA 60.135 52.381 0.00 0.00 33.68 3.07
127 128 1.280982 CGGACGATGTCACTTCCATG 58.719 55.000 0.00 0.00 33.68 3.66
128 129 0.175760 CCGGACGATGTCACTTCCAT 59.824 55.000 0.00 0.00 33.68 3.41
129 130 1.589630 CCGGACGATGTCACTTCCA 59.410 57.895 0.00 0.00 33.68 3.53
130 131 1.810030 GCCGGACGATGTCACTTCC 60.810 63.158 5.05 0.00 33.68 3.46
131 132 1.810030 GGCCGGACGATGTCACTTC 60.810 63.158 5.05 0.00 33.68 3.01
132 133 2.264794 GGCCGGACGATGTCACTT 59.735 61.111 5.05 0.00 33.68 3.16
133 134 4.129737 CGGCCGGACGATGTCACT 62.130 66.667 30.37 0.00 33.68 3.41
136 137 4.570663 CTCCGGCCGGACGATGTC 62.571 72.222 42.66 0.00 39.76 3.06
148 149 3.420482 AATGGGGAAGGGCTCCGG 61.420 66.667 0.00 0.00 46.51 5.14
149 150 2.193248 GAATGGGGAAGGGCTCCG 59.807 66.667 0.00 0.00 46.51 4.63
150 151 2.000825 GAGGAATGGGGAAGGGCTCC 62.001 65.000 0.00 0.00 44.54 4.70
151 152 1.281925 TGAGGAATGGGGAAGGGCTC 61.282 60.000 0.00 0.00 0.00 4.70
152 153 0.628668 ATGAGGAATGGGGAAGGGCT 60.629 55.000 0.00 0.00 0.00 5.19
153 154 0.178978 GATGAGGAATGGGGAAGGGC 60.179 60.000 0.00 0.00 0.00 5.19
154 155 1.144503 CTGATGAGGAATGGGGAAGGG 59.855 57.143 0.00 0.00 0.00 3.95
155 156 1.849039 ACTGATGAGGAATGGGGAAGG 59.151 52.381 0.00 0.00 0.00 3.46
156 157 3.054139 TGAACTGATGAGGAATGGGGAAG 60.054 47.826 0.00 0.00 0.00 3.46
157 158 2.918934 TGAACTGATGAGGAATGGGGAA 59.081 45.455 0.00 0.00 0.00 3.97
158 159 2.561187 TGAACTGATGAGGAATGGGGA 58.439 47.619 0.00 0.00 0.00 4.81
159 160 3.370840 TTGAACTGATGAGGAATGGGG 57.629 47.619 0.00 0.00 0.00 4.96
160 161 4.338879 AGTTTGAACTGATGAGGAATGGG 58.661 43.478 0.00 0.00 37.98 4.00
173 174 1.027357 CCTGTGCTGCAGTTTGAACT 58.973 50.000 16.64 0.00 43.55 3.01
174 175 0.595825 GCCTGTGCTGCAGTTTGAAC 60.596 55.000 16.64 7.08 43.55 3.18
175 176 1.735360 GCCTGTGCTGCAGTTTGAA 59.265 52.632 16.64 0.00 43.55 2.69
176 177 2.195567 GGCCTGTGCTGCAGTTTGA 61.196 57.895 16.64 0.00 43.55 2.69
177 178 2.337532 GGCCTGTGCTGCAGTTTG 59.662 61.111 16.64 3.51 43.55 2.93
178 179 3.289834 CGGCCTGTGCTGCAGTTT 61.290 61.111 16.64 0.00 43.55 2.66
199 200 6.324512 TGATAAGATAACCTTGGTAGCGGTAA 59.675 38.462 0.00 0.00 36.34 2.85
200 201 5.834742 TGATAAGATAACCTTGGTAGCGGTA 59.165 40.000 0.00 0.00 36.34 4.02
204 205 6.224584 GTCCTGATAAGATAACCTTGGTAGC 58.775 44.000 0.00 0.00 36.34 3.58
224 225 1.598130 GCAAACAGGTGCTCGTCCT 60.598 57.895 0.00 0.00 41.51 3.85
230 231 2.598394 ATGCGGCAAACAGGTGCT 60.598 55.556 6.82 0.00 44.31 4.40
262 263 5.163322 TGACATGTCAAAGGAAGCCATTTTT 60.163 36.000 26.02 0.00 36.53 1.94
263 264 4.344679 TGACATGTCAAAGGAAGCCATTTT 59.655 37.500 26.02 0.00 36.53 1.82
294 301 4.461781 GGTATGTATGATGGCGTAGGTACT 59.538 45.833 0.00 0.00 46.37 2.73
301 308 3.625764 GTGTTTGGTATGTATGATGGCGT 59.374 43.478 0.00 0.00 0.00 5.68
304 311 7.770201 TCATTTGTGTTTGGTATGTATGATGG 58.230 34.615 0.00 0.00 0.00 3.51
367 378 6.828273 TCTCCACTTCAGTTCTCATTTGAAAA 59.172 34.615 0.00 0.00 31.11 2.29
406 418 1.325355 GAATGCCATGATCACAGGGG 58.675 55.000 15.70 8.68 46.51 4.79
410 422 2.164017 CGTTTGGAATGCCATGATCACA 59.836 45.455 0.00 0.00 45.46 3.58
429 441 0.036388 ATTGACAAGGATGGCGTCGT 60.036 50.000 0.00 0.00 37.40 4.34
505 517 1.144565 CGTCGGCTCAGCTCTCATTG 61.145 60.000 0.00 0.00 0.00 2.82
527 539 0.747255 ACGGGATTGAGGTGAGATCG 59.253 55.000 0.00 0.00 0.00 3.69
532 544 0.976073 GGAGGACGGGATTGAGGTGA 60.976 60.000 0.00 0.00 0.00 4.02
542 554 1.611261 TAGGTGGTTGGAGGACGGG 60.611 63.158 0.00 0.00 0.00 5.28
571 600 2.367202 TGCAAGGATCCCGGAGACC 61.367 63.158 8.55 2.36 0.00 3.85
578 607 3.134127 GTGGCGTGCAAGGATCCC 61.134 66.667 8.55 0.00 0.00 3.85
580 609 1.503542 CTTGTGGCGTGCAAGGATC 59.496 57.895 0.79 0.00 39.53 3.36
585 614 4.249020 CGTGCTTGTGGCGTGCAA 62.249 61.111 0.00 0.00 45.43 4.08
633 670 2.404789 CATGCAATGGTCGCCGAC 59.595 61.111 9.15 9.15 41.79 4.79
656 693 1.135083 GGGTAGACGATGTGACACAGG 60.135 57.143 14.66 10.73 0.00 4.00
673 710 4.027437 GTCATCTCTTGGAACTCTAGGGT 58.973 47.826 0.00 0.00 0.00 4.34
706 772 1.645710 AGGGTGTTCGATGGAGTTCT 58.354 50.000 0.00 0.00 0.00 3.01
710 776 0.527817 GCGTAGGGTGTTCGATGGAG 60.528 60.000 0.00 0.00 0.00 3.86
745 811 0.535335 GCCATGTACTCCAACCTCGA 59.465 55.000 0.00 0.00 0.00 4.04
767 833 0.178831 ACTCCAACCCCATTCCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
779 845 1.433534 GCTGCAGAGTGTACTCCAAC 58.566 55.000 20.43 0.00 43.88 3.77
780 846 0.321671 GGCTGCAGAGTGTACTCCAA 59.678 55.000 20.43 0.00 43.88 3.53
781 847 1.544825 GGGCTGCAGAGTGTACTCCA 61.545 60.000 20.43 0.42 43.88 3.86
783 849 1.153745 CGGGCTGCAGAGTGTACTC 60.154 63.158 20.43 3.85 43.17 2.59
784 850 1.599606 CTCGGGCTGCAGAGTGTACT 61.600 60.000 20.43 0.00 0.00 2.73
785 851 1.153745 CTCGGGCTGCAGAGTGTAC 60.154 63.158 20.43 0.00 0.00 2.90
786 852 3.006756 GCTCGGGCTGCAGAGTGTA 62.007 63.158 20.43 0.00 36.88 2.90
787 853 4.385405 GCTCGGGCTGCAGAGTGT 62.385 66.667 20.43 0.00 36.88 3.55
823 918 4.479993 GCCACAGCTCGATGCCCT 62.480 66.667 3.66 0.00 44.23 5.19
829 924 3.443925 CTCCTCGCCACAGCTCGA 61.444 66.667 0.00 0.00 36.60 4.04
832 927 3.073735 CTCCTCCTCGCCACAGCT 61.074 66.667 0.00 0.00 36.60 4.24
835 930 1.535444 TTTCCTCCTCCTCGCCACA 60.535 57.895 0.00 0.00 0.00 4.17
837 932 1.990060 CCTTTCCTCCTCCTCGCCA 60.990 63.158 0.00 0.00 0.00 5.69
975 4109 0.248289 TGGCCCGCTAAGAACTGTAC 59.752 55.000 0.00 0.00 0.00 2.90
976 4110 0.248289 GTGGCCCGCTAAGAACTGTA 59.752 55.000 0.00 0.00 0.00 2.74
1095 4521 2.981302 CAGCCAGTGGATCGGTCA 59.019 61.111 15.20 0.00 0.00 4.02
1129 4555 5.249420 TCGTCTTGAATGAGAGAGAGAGAA 58.751 41.667 0.00 0.00 0.00 2.87
1130 4556 4.837972 TCGTCTTGAATGAGAGAGAGAGA 58.162 43.478 0.00 0.00 0.00 3.10
1143 4569 4.011023 CTCCTTCTACCTCTCGTCTTGAA 58.989 47.826 0.00 0.00 0.00 2.69
1151 4577 2.713863 TCCGTCTCCTTCTACCTCTC 57.286 55.000 0.00 0.00 0.00 3.20
1254 5850 3.181437 TGGTGTGAGTCCGGCTATATAGA 60.181 47.826 14.16 0.00 0.00 1.98
1255 5851 3.154710 TGGTGTGAGTCCGGCTATATAG 58.845 50.000 5.30 5.30 0.00 1.31
1288 5896 4.308458 TTAGTGGCTGGCGTGCGT 62.308 61.111 0.00 0.00 0.00 5.24
1289 5897 3.788766 GTTAGTGGCTGGCGTGCG 61.789 66.667 0.00 0.00 0.00 5.34
1290 5898 2.358737 AGTTAGTGGCTGGCGTGC 60.359 61.111 0.00 0.00 0.00 5.34
1291 5899 2.680913 GCAGTTAGTGGCTGGCGTG 61.681 63.158 0.00 0.00 34.73 5.34
1292 5900 2.358737 GCAGTTAGTGGCTGGCGT 60.359 61.111 0.00 0.00 34.73 5.68
1293 5901 1.746615 ATGCAGTTAGTGGCTGGCG 60.747 57.895 0.00 0.00 34.73 5.69
1294 5902 1.660560 CCATGCAGTTAGTGGCTGGC 61.661 60.000 0.00 0.00 34.73 4.85
1295 5903 0.035152 TCCATGCAGTTAGTGGCTGG 60.035 55.000 0.00 0.00 34.73 4.85
1314 5926 0.898320 AGTGCATGCGTAGGAAGAGT 59.102 50.000 14.09 0.00 0.00 3.24
1342 5954 2.668632 CTACAAAGCCGGCTGGGA 59.331 61.111 33.60 21.58 38.47 4.37
1395 6007 0.824595 TCACGTTGGGAGAAGACCGA 60.825 55.000 0.00 0.00 0.00 4.69
1574 7318 3.558411 GGACGAGCATGACAGCGC 61.558 66.667 0.00 0.00 40.15 5.92
1575 7319 2.887568 GGGACGAGCATGACAGCG 60.888 66.667 0.00 0.00 40.15 5.18
1689 8451 2.102578 AGCATGTTGGAATAAGCCACC 58.897 47.619 0.00 0.00 37.75 4.61
1707 8469 1.004440 AGGTCGCTGAGGTGAAAGC 60.004 57.895 0.00 0.00 33.47 3.51
1709 8471 1.289066 CGAGGTCGCTGAGGTGAAA 59.711 57.895 0.00 0.00 33.47 2.69
1710 8472 2.962569 CGAGGTCGCTGAGGTGAA 59.037 61.111 0.00 0.00 33.47 3.18
1743 9946 5.725362 AGGAATCGAAGAGGTTTTCTGTAG 58.275 41.667 0.00 0.00 43.63 2.74
1748 9951 3.371285 CGGAAGGAATCGAAGAGGTTTTC 59.629 47.826 0.00 0.00 43.63 2.29
1783 9999 1.780309 ACCGAGAGATCTGGAGAGGAT 59.220 52.381 0.00 0.00 0.00 3.24
1886 10137 0.035739 TAAGCCCCAAACCTCGACAC 59.964 55.000 0.00 0.00 0.00 3.67
1974 10419 3.523564 ACTTACCCGGTAGTACCAGTCTA 59.476 47.826 19.41 6.99 38.47 2.59
1975 10420 2.310052 ACTTACCCGGTAGTACCAGTCT 59.690 50.000 19.41 1.08 38.47 3.24
1976 10421 2.728007 ACTTACCCGGTAGTACCAGTC 58.272 52.381 19.41 0.00 38.47 3.51
1977 10422 2.907458 ACTTACCCGGTAGTACCAGT 57.093 50.000 19.41 16.75 38.47 4.00
1978 10423 7.231317 TCAATATAACTTACCCGGTAGTACCAG 59.769 40.741 19.41 11.89 38.47 4.00
2015 10463 1.662517 TTGTTCAACAGCTTGCTCGA 58.337 45.000 0.00 0.00 0.00 4.04
2017 10465 3.631145 TCATTGTTCAACAGCTTGCTC 57.369 42.857 0.00 0.00 0.00 4.26
2093 10770 6.204882 GTGATTTCCTGTTGGTATAGTATGCC 59.795 42.308 10.18 10.18 35.37 4.40
2108 10785 6.872020 AGAAATTTGCTGAATGTGATTTCCTG 59.128 34.615 0.00 0.00 35.28 3.86
2299 13657 6.428465 TGACAGTTCAAGAGTGTGTGTTTTTA 59.572 34.615 0.00 0.00 41.98 1.52
2320 13678 7.851387 TTACAACAACTAAAGATGTGTGACA 57.149 32.000 0.00 0.00 31.23 3.58
2348 13706 4.712476 AGAAGTCAGTGCTCAAGAAACAT 58.288 39.130 0.00 0.00 0.00 2.71
3130 14682 3.882013 CAACACGCACCAACGCCA 61.882 61.111 0.00 0.00 36.19 5.69
3255 14807 2.041819 GGGATCGGGGTGGAGAGT 60.042 66.667 0.00 0.00 0.00 3.24
3384 14936 2.825836 CGCAATCCCTCACCTGCC 60.826 66.667 0.00 0.00 0.00 4.85
3620 15173 5.005740 CCAACATCTTCCTTCTCAATCACA 58.994 41.667 0.00 0.00 0.00 3.58
3662 15215 1.274703 ATGGACCGTGCTCCAGGAAT 61.275 55.000 0.00 0.00 43.82 3.01
3752 15305 7.119846 CACAAAAGATTACAGCTAGTAAAGGCT 59.880 37.037 11.18 7.65 45.25 4.58
3831 15384 2.683867 CAACCCAACTTACAACGGTCAA 59.316 45.455 0.00 0.00 0.00 3.18
3932 15485 1.974236 AGTCTCCTGGTTCCACTGAAG 59.026 52.381 0.00 0.00 0.00 3.02
3933 15486 2.103153 AGTCTCCTGGTTCCACTGAA 57.897 50.000 0.00 0.00 0.00 3.02
3934 15487 2.992847 TAGTCTCCTGGTTCCACTGA 57.007 50.000 0.00 0.00 0.00 3.41
3935 15488 5.144100 AGATATAGTCTCCTGGTTCCACTG 58.856 45.833 0.00 0.00 28.45 3.66
3936 15489 5.411103 AGATATAGTCTCCTGGTTCCACT 57.589 43.478 0.00 0.00 28.45 4.00
3937 15490 7.784470 ATAAGATATAGTCTCCTGGTTCCAC 57.216 40.000 0.00 0.00 35.67 4.02
3938 15491 9.702253 GATATAAGATATAGTCTCCTGGTTCCA 57.298 37.037 0.00 0.00 35.67 3.53
3939 15492 9.702253 TGATATAAGATATAGTCTCCTGGTTCC 57.298 37.037 0.00 0.00 35.67 3.62
3941 15494 9.482175 GGTGATATAAGATATAGTCTCCTGGTT 57.518 37.037 0.00 0.00 35.67 3.67
3942 15495 8.062536 GGGTGATATAAGATATAGTCTCCTGGT 58.937 40.741 0.00 0.00 35.67 4.00
3958 15511 7.232534 GGCATTGAAATAACAGGGGTGATATAA 59.767 37.037 0.00 0.00 0.00 0.98
4172 16367 5.835113 TTAAAGATCAATACCTTGGCAGC 57.165 39.130 0.00 0.00 32.95 5.25
4241 16511 8.351495 GTTCATTGAACTGCAAAAACATCTTA 57.649 30.769 19.90 0.00 40.48 2.10
4242 16512 7.237920 GTTCATTGAACTGCAAAAACATCTT 57.762 32.000 19.90 0.00 40.48 2.40
4243 16513 6.833342 GTTCATTGAACTGCAAAAACATCT 57.167 33.333 19.90 0.00 40.48 2.90
4272 16542 9.436957 CCTCTGTAACTTAATGTAAGATGTTGT 57.563 33.333 2.11 0.00 39.09 3.32
4274 16544 8.100791 TGCCTCTGTAACTTAATGTAAGATGTT 58.899 33.333 2.11 0.00 39.09 2.71
4276 16546 7.766278 ACTGCCTCTGTAACTTAATGTAAGATG 59.234 37.037 2.11 0.00 39.09 2.90
4278 16548 7.241042 ACTGCCTCTGTAACTTAATGTAAGA 57.759 36.000 2.11 0.00 39.09 2.10
4281 16551 8.074613 ACATACTGCCTCTGTAACTTAATGTA 57.925 34.615 0.00 0.00 0.00 2.29
4283 16553 7.849804 AACATACTGCCTCTGTAACTTAATG 57.150 36.000 0.00 0.00 0.00 1.90
4285 16555 9.431887 CTAAAACATACTGCCTCTGTAACTTAA 57.568 33.333 0.00 0.00 0.00 1.85
4286 16556 8.591072 ACTAAAACATACTGCCTCTGTAACTTA 58.409 33.333 0.00 0.00 0.00 2.24
4287 16557 7.387948 CACTAAAACATACTGCCTCTGTAACTT 59.612 37.037 0.00 0.00 0.00 2.66
4289 16559 6.649557 ACACTAAAACATACTGCCTCTGTAAC 59.350 38.462 0.00 0.00 0.00 2.50
4290 16560 6.649141 CACACTAAAACATACTGCCTCTGTAA 59.351 38.462 0.00 0.00 0.00 2.41
4294 16597 5.228945 ACACACTAAAACATACTGCCTCT 57.771 39.130 0.00 0.00 0.00 3.69
4315 16618 9.841295 TGTGTCCTAAAACCCATATAGATAAAC 57.159 33.333 0.00 0.00 0.00 2.01
4326 16660 2.235016 GTGCATGTGTCCTAAAACCCA 58.765 47.619 0.00 0.00 0.00 4.51
4346 16680 5.518848 TGGCATCAATAGGTAGCAATTTG 57.481 39.130 0.00 0.00 0.00 2.32
4354 16688 7.573710 AGTAAATGTCTTGGCATCAATAGGTA 58.426 34.615 0.00 0.00 31.75 3.08
4393 16728 7.834068 TCTGCAATCTAAGATACACAAGAAC 57.166 36.000 0.00 0.00 0.00 3.01
4532 17457 5.446143 ACGTAAAATCATTGTTTGCCAGA 57.554 34.783 0.00 0.00 0.00 3.86
4553 17478 2.480416 CGCTCCATCAAGTAGACTGGAC 60.480 54.545 0.00 0.00 33.35 4.02
4637 17570 4.871933 AAATTTGGCAGGGAACTTACAG 57.128 40.909 0.00 0.00 40.21 2.74
4672 17613 8.210946 ACTTTCCATTACTAGCATAAGCATGTA 58.789 33.333 0.00 0.00 45.49 2.29
4876 17833 4.916293 GATGGCCGCTGATCCGCA 62.916 66.667 9.90 0.00 0.00 5.69
4881 17838 2.433446 GATGGGATGGCCGCTGAT 59.567 61.111 0.00 0.00 33.83 2.90
4891 17848 0.879765 GTCGTACGATCGGATGGGAT 59.120 55.000 22.57 0.00 0.00 3.85
4900 17857 4.030134 AGAATGGTCTTGTCGTACGATC 57.970 45.455 22.57 15.08 0.00 3.69
4901 17858 3.181489 GGAGAATGGTCTTGTCGTACGAT 60.181 47.826 22.57 0.93 32.80 3.73
4935 17892 3.095911 CTGCACTGTAGCCATGCG 58.904 61.111 0.00 0.00 42.44 4.73
4957 17918 3.112709 GCACTCCGGTCAGCGAAC 61.113 66.667 0.00 0.00 0.00 3.95
4968 17929 2.022129 CGTTGACGTCAGGCACTCC 61.022 63.158 19.11 1.57 33.22 3.85
4988 17949 1.264749 TGGGACTACAATGGCGAGCT 61.265 55.000 0.00 0.00 0.00 4.09
4997 17958 1.746322 TTGGCGTCGTGGGACTACAA 61.746 55.000 0.00 0.00 41.16 2.41
5179 18160 1.141657 GGCCAGACTCTATGCATGGAA 59.858 52.381 14.19 0.00 32.55 3.53
5191 18173 1.077625 ACGGAGAGAAGGCCAGACT 59.922 57.895 5.01 0.00 0.00 3.24
5194 18176 1.954362 CTCCACGGAGAGAAGGCCAG 61.954 65.000 5.01 0.00 44.53 4.85
5205 18187 0.039180 TTCTACTGAGGCTCCACGGA 59.961 55.000 12.86 2.76 0.00 4.69
5234 18216 0.529773 TCTCGTGCGTATGAATGGGC 60.530 55.000 0.00 0.00 0.00 5.36
5262 18265 4.469657 GAGGAAGAAGGATCTAGCTCTCA 58.530 47.826 0.00 0.00 33.77 3.27
5314 18317 6.773583 TGGTATATTAGGCACAAGGGTTAT 57.226 37.500 0.00 0.00 0.00 1.89
5330 18333 5.776716 CCCAATCTTGCTGGAAATGGTATAT 59.223 40.000 7.09 0.00 35.85 0.86
5331 18334 5.139727 CCCAATCTTGCTGGAAATGGTATA 58.860 41.667 7.09 0.00 35.85 1.47
5342 18345 1.818674 GTAACACCCCCAATCTTGCTG 59.181 52.381 0.00 0.00 0.00 4.41
5347 18350 1.296002 GGAGGTAACACCCCCAATCT 58.704 55.000 0.00 0.00 42.26 2.40
5442 18487 2.447887 GCGTGACTGCATGAGGACG 61.448 63.158 0.00 5.88 35.67 4.79
5444 18489 1.079612 CAGCGTGACTGCATGAGGA 60.080 57.895 0.00 0.00 40.19 3.71
5445 18490 3.482809 CAGCGTGACTGCATGAGG 58.517 61.111 0.00 0.00 40.19 3.86
5453 18498 4.008933 GTGGAGGGCAGCGTGACT 62.009 66.667 0.00 0.00 0.00 3.41
5454 18499 3.537206 AAGTGGAGGGCAGCGTGAC 62.537 63.158 0.00 0.00 0.00 3.67
5493 18556 1.377202 GTCATGGTGGCATCACGGT 60.377 57.895 0.63 0.00 44.50 4.83
5526 18589 1.153568 GCCTATGCGCACTGTCTCA 60.154 57.895 14.90 0.00 0.00 3.27
5546 18609 4.226427 TCATGCATCTAGTCCTTTGCTT 57.774 40.909 0.00 0.00 36.10 3.91
5549 18612 4.625028 TCGATCATGCATCTAGTCCTTTG 58.375 43.478 0.00 0.00 0.00 2.77
5551 18614 4.100035 TGTTCGATCATGCATCTAGTCCTT 59.900 41.667 0.00 0.00 0.00 3.36
5555 18618 4.212847 GCATTGTTCGATCATGCATCTAGT 59.787 41.667 15.49 0.00 38.08 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.