Multiple sequence alignment - TraesCS2A01G534700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G534700 chr2A 100.000 2432 0 0 1 2432 750150870 750148439 0.000000e+00 4492.0
1 TraesCS2A01G534700 chr2A 90.027 1464 104 22 976 2432 415062215 415063643 0.000000e+00 1857.0
2 TraesCS2A01G534700 chr2A 92.076 631 33 6 1 614 565285222 565285852 0.000000e+00 872.0
3 TraesCS2A01G534700 chr2A 84.759 643 47 15 1 614 78622952 78623572 4.480000e-167 597.0
4 TraesCS2A01G534700 chr2A 88.716 257 17 4 1 245 739373358 739373614 1.090000e-78 303.0
5 TraesCS2A01G534700 chr7D 92.541 1582 59 20 878 2432 498275260 498273711 0.000000e+00 2213.0
6 TraesCS2A01G534700 chr2D 90.034 1465 103 24 976 2432 317942412 317940983 0.000000e+00 1857.0
7 TraesCS2A01G534700 chr2D 92.483 572 32 3 51 614 70797681 70797113 0.000000e+00 808.0
8 TraesCS2A01G534700 chr2D 91.067 403 20 2 2037 2432 610708929 610709322 4.600000e-147 531.0
9 TraesCS2A01G534700 chr2D 93.981 216 13 0 1268 1483 610707318 610707533 6.480000e-86 327.0
10 TraesCS2A01G534700 chr2D 90.717 237 19 2 1474 1708 610708698 610708933 1.820000e-81 313.0
11 TraesCS2A01G534700 chr2B 89.945 1462 96 27 976 2432 385562378 385560963 0.000000e+00 1838.0
12 TraesCS2A01G534700 chr5B 90.995 633 35 10 1 614 6260925 6261554 0.000000e+00 833.0
13 TraesCS2A01G534700 chr5B 90.808 631 34 9 1 614 517572027 517571404 0.000000e+00 822.0
14 TraesCS2A01G534700 chr5B 77.495 511 90 15 1102 1607 579522000 579521510 1.420000e-72 283.0
15 TraesCS2A01G534700 chr5B 77.539 512 88 17 1102 1607 579810053 579809563 1.420000e-72 283.0
16 TraesCS2A01G534700 chr4D 90.895 637 30 7 1 614 503905820 503906451 0.000000e+00 830.0
17 TraesCS2A01G534700 chr4D 97.297 37 1 0 650 686 503280257 503280221 2.020000e-06 63.9
18 TraesCS2A01G534700 chr3D 90.079 635 32 8 1 614 124070661 124071285 0.000000e+00 795.0
19 TraesCS2A01G534700 chr6D 91.798 573 31 7 51 614 58721656 58721091 0.000000e+00 784.0
20 TraesCS2A01G534700 chr6B 88.629 642 45 9 1 614 43814439 43815080 0.000000e+00 756.0
21 TraesCS2A01G534700 chr6B 87.678 633 46 7 1 614 38942292 38942911 0.000000e+00 708.0
22 TraesCS2A01G534700 chr6B 84.711 641 46 19 1 614 114516673 114516058 5.790000e-166 593.0
23 TraesCS2A01G534700 chr3B 88.730 630 46 13 4 616 784051374 784051995 0.000000e+00 747.0
24 TraesCS2A01G534700 chr3A 88.413 630 42 11 1 614 308674572 308675186 0.000000e+00 730.0
25 TraesCS2A01G534700 chr5D 77.016 496 91 15 1102 1593 472522565 472522089 1.850000e-66 263.0
26 TraesCS2A01G534700 chr5A 76.660 497 91 18 1102 1593 592036147 592035671 4.010000e-63 252.0
27 TraesCS2A01G534700 chrUn 86.458 96 6 2 650 745 183131375 183131463 5.530000e-17 99.0
28 TraesCS2A01G534700 chrUn 86.458 96 6 2 650 745 183183911 183183999 5.530000e-17 99.0
29 TraesCS2A01G534700 chrUn 86.458 96 6 2 650 745 254881674 254881762 5.530000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G534700 chr2A 750148439 750150870 2431 True 4492.000000 4492 100.000000 1 2432 1 chr2A.!!$R1 2431
1 TraesCS2A01G534700 chr2A 415062215 415063643 1428 False 1857.000000 1857 90.027000 976 2432 1 chr2A.!!$F2 1456
2 TraesCS2A01G534700 chr2A 565285222 565285852 630 False 872.000000 872 92.076000 1 614 1 chr2A.!!$F3 613
3 TraesCS2A01G534700 chr2A 78622952 78623572 620 False 597.000000 597 84.759000 1 614 1 chr2A.!!$F1 613
4 TraesCS2A01G534700 chr7D 498273711 498275260 1549 True 2213.000000 2213 92.541000 878 2432 1 chr7D.!!$R1 1554
5 TraesCS2A01G534700 chr2D 317940983 317942412 1429 True 1857.000000 1857 90.034000 976 2432 1 chr2D.!!$R2 1456
6 TraesCS2A01G534700 chr2D 70797113 70797681 568 True 808.000000 808 92.483000 51 614 1 chr2D.!!$R1 563
7 TraesCS2A01G534700 chr2D 610707318 610709322 2004 False 390.333333 531 91.921667 1268 2432 3 chr2D.!!$F1 1164
8 TraesCS2A01G534700 chr2B 385560963 385562378 1415 True 1838.000000 1838 89.945000 976 2432 1 chr2B.!!$R1 1456
9 TraesCS2A01G534700 chr5B 6260925 6261554 629 False 833.000000 833 90.995000 1 614 1 chr5B.!!$F1 613
10 TraesCS2A01G534700 chr5B 517571404 517572027 623 True 822.000000 822 90.808000 1 614 1 chr5B.!!$R1 613
11 TraesCS2A01G534700 chr4D 503905820 503906451 631 False 830.000000 830 90.895000 1 614 1 chr4D.!!$F1 613
12 TraesCS2A01G534700 chr3D 124070661 124071285 624 False 795.000000 795 90.079000 1 614 1 chr3D.!!$F1 613
13 TraesCS2A01G534700 chr6D 58721091 58721656 565 True 784.000000 784 91.798000 51 614 1 chr6D.!!$R1 563
14 TraesCS2A01G534700 chr6B 43814439 43815080 641 False 756.000000 756 88.629000 1 614 1 chr6B.!!$F2 613
15 TraesCS2A01G534700 chr6B 38942292 38942911 619 False 708.000000 708 87.678000 1 614 1 chr6B.!!$F1 613
16 TraesCS2A01G534700 chr6B 114516058 114516673 615 True 593.000000 593 84.711000 1 614 1 chr6B.!!$R1 613
17 TraesCS2A01G534700 chr3B 784051374 784051995 621 False 747.000000 747 88.730000 4 616 1 chr3B.!!$F1 612
18 TraesCS2A01G534700 chr3A 308674572 308675186 614 False 730.000000 730 88.413000 1 614 1 chr3A.!!$F1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 811 0.036483 TCACATGCACGGCACATACT 60.036 50.0 0.5 0.0 43.04 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 3044 1.153667 GCAGAAGTCAGAGCCCGAG 60.154 63.158 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 76 1.600957 TCACGACGACGAAGAAGAAGT 59.399 47.619 15.32 0.00 42.66 3.01
165 181 3.566322 CGAGATGGAGTACTACTGGAAGG 59.434 52.174 6.66 0.00 39.30 3.46
215 237 3.917760 GAGGATGAGGCCGGTCCG 61.918 72.222 0.08 3.60 40.77 4.79
336 370 1.893210 CGAAGGAGGAGTTCTGGGAGT 60.893 57.143 0.00 0.00 0.00 3.85
456 503 9.413048 GAACTATATTGAATGGACTAGTAGCAC 57.587 37.037 0.00 0.00 0.00 4.40
469 526 5.464168 ACTAGTAGCACGTCGTTTTACATT 58.536 37.500 14.87 2.64 0.00 2.71
470 527 6.611381 ACTAGTAGCACGTCGTTTTACATTA 58.389 36.000 14.87 3.41 0.00 1.90
505 563 7.943079 TCATCTATTGGATTTGCTCTTTTGA 57.057 32.000 0.00 0.00 31.27 2.69
577 654 6.456315 CCAAACTTTTTGACGGTCCAAATTTC 60.456 38.462 8.05 0.00 36.12 2.17
616 693 4.502962 ACCGCCAAATTTTGAACCATATG 58.497 39.130 10.72 0.00 0.00 1.78
617 694 3.309410 CCGCCAAATTTTGAACCATATGC 59.691 43.478 10.72 2.29 0.00 3.14
618 695 4.183101 CGCCAAATTTTGAACCATATGCT 58.817 39.130 10.72 0.00 0.00 3.79
619 696 4.268405 CGCCAAATTTTGAACCATATGCTC 59.732 41.667 10.72 0.00 0.00 4.26
620 697 5.422145 GCCAAATTTTGAACCATATGCTCT 58.578 37.500 10.72 0.00 0.00 4.09
621 698 6.572519 GCCAAATTTTGAACCATATGCTCTA 58.427 36.000 10.72 0.00 0.00 2.43
622 699 7.041107 GCCAAATTTTGAACCATATGCTCTAA 58.959 34.615 10.72 0.00 0.00 2.10
623 700 7.548780 GCCAAATTTTGAACCATATGCTCTAAA 59.451 33.333 10.72 11.89 0.00 1.85
624 701 9.434420 CCAAATTTTGAACCATATGCTCTAAAA 57.566 29.630 10.72 10.44 0.00 1.52
627 704 8.652810 ATTTTGAACCATATGCTCTAAAATGC 57.347 30.769 12.86 0.00 0.00 3.56
628 705 6.772360 TTGAACCATATGCTCTAAAATGCA 57.228 33.333 0.00 0.00 43.67 3.96
629 706 6.135290 TGAACCATATGCTCTAAAATGCAC 57.865 37.500 0.00 0.00 42.26 4.57
630 707 5.067674 TGAACCATATGCTCTAAAATGCACC 59.932 40.000 0.00 0.00 42.26 5.01
631 708 3.565482 ACCATATGCTCTAAAATGCACCG 59.435 43.478 0.00 0.00 42.26 4.94
632 709 3.814842 CCATATGCTCTAAAATGCACCGA 59.185 43.478 0.00 0.00 42.26 4.69
633 710 4.083643 CCATATGCTCTAAAATGCACCGAG 60.084 45.833 0.00 0.00 42.26 4.63
634 711 2.472695 TGCTCTAAAATGCACCGAGT 57.527 45.000 0.00 0.00 33.94 4.18
635 712 2.346803 TGCTCTAAAATGCACCGAGTC 58.653 47.619 0.00 0.00 33.94 3.36
636 713 2.289382 TGCTCTAAAATGCACCGAGTCA 60.289 45.455 0.00 0.00 33.94 3.41
637 714 2.742053 GCTCTAAAATGCACCGAGTCAA 59.258 45.455 0.00 0.00 0.00 3.18
638 715 3.424962 GCTCTAAAATGCACCGAGTCAAC 60.425 47.826 0.00 0.00 0.00 3.18
639 716 3.997021 CTCTAAAATGCACCGAGTCAACT 59.003 43.478 0.00 0.00 0.00 3.16
640 717 3.745975 TCTAAAATGCACCGAGTCAACTG 59.254 43.478 0.00 0.00 0.00 3.16
641 718 0.593128 AAATGCACCGAGTCAACTGC 59.407 50.000 0.00 0.00 0.00 4.40
642 719 0.250467 AATGCACCGAGTCAACTGCT 60.250 50.000 0.00 0.00 0.00 4.24
643 720 0.250467 ATGCACCGAGTCAACTGCTT 60.250 50.000 0.00 0.00 0.00 3.91
644 721 0.463654 TGCACCGAGTCAACTGCTTT 60.464 50.000 5.54 0.00 0.00 3.51
645 722 0.235926 GCACCGAGTCAACTGCTTTC 59.764 55.000 0.00 0.00 0.00 2.62
646 723 1.581934 CACCGAGTCAACTGCTTTCA 58.418 50.000 0.00 0.00 0.00 2.69
647 724 1.939934 CACCGAGTCAACTGCTTTCAA 59.060 47.619 0.00 0.00 0.00 2.69
648 725 2.549754 CACCGAGTCAACTGCTTTCAAT 59.450 45.455 0.00 0.00 0.00 2.57
649 726 3.745975 CACCGAGTCAACTGCTTTCAATA 59.254 43.478 0.00 0.00 0.00 1.90
650 727 4.393062 CACCGAGTCAACTGCTTTCAATAT 59.607 41.667 0.00 0.00 0.00 1.28
651 728 5.580691 CACCGAGTCAACTGCTTTCAATATA 59.419 40.000 0.00 0.00 0.00 0.86
652 729 5.581085 ACCGAGTCAACTGCTTTCAATATAC 59.419 40.000 0.00 0.00 0.00 1.47
653 730 5.580691 CCGAGTCAACTGCTTTCAATATACA 59.419 40.000 0.00 0.00 0.00 2.29
654 731 6.455646 CCGAGTCAACTGCTTTCAATATACAC 60.456 42.308 0.00 0.00 0.00 2.90
655 732 6.090763 CGAGTCAACTGCTTTCAATATACACA 59.909 38.462 0.00 0.00 0.00 3.72
656 733 7.360017 CGAGTCAACTGCTTTCAATATACACAA 60.360 37.037 0.00 0.00 0.00 3.33
657 734 8.165239 AGTCAACTGCTTTCAATATACACAAA 57.835 30.769 0.00 0.00 0.00 2.83
658 735 8.796475 AGTCAACTGCTTTCAATATACACAAAT 58.204 29.630 0.00 0.00 0.00 2.32
659 736 8.853345 GTCAACTGCTTTCAATATACACAAATG 58.147 33.333 0.00 0.00 0.00 2.32
660 737 8.575589 TCAACTGCTTTCAATATACACAAATGT 58.424 29.630 0.00 0.00 43.30 2.71
661 738 9.838975 CAACTGCTTTCAATATACACAAATGTA 57.161 29.630 0.00 0.00 45.37 2.29
722 799 5.751243 ATTAATTAAGTCGGGTCACATGC 57.249 39.130 3.94 0.00 0.00 4.06
723 800 2.779755 ATTAAGTCGGGTCACATGCA 57.220 45.000 0.00 0.00 0.00 3.96
724 801 1.803334 TTAAGTCGGGTCACATGCAC 58.197 50.000 0.00 0.00 0.00 4.57
725 802 0.389296 TAAGTCGGGTCACATGCACG 60.389 55.000 0.00 0.00 0.00 5.34
726 803 3.118454 GTCGGGTCACATGCACGG 61.118 66.667 0.00 0.00 0.00 4.94
729 806 3.737172 GGGTCACATGCACGGCAC 61.737 66.667 0.50 0.00 43.04 5.01
730 807 2.977456 GGTCACATGCACGGCACA 60.977 61.111 0.50 0.00 43.04 4.57
731 808 2.334946 GGTCACATGCACGGCACAT 61.335 57.895 0.50 0.00 43.04 3.21
732 809 1.024046 GGTCACATGCACGGCACATA 61.024 55.000 0.50 0.00 43.04 2.29
733 810 0.096976 GTCACATGCACGGCACATAC 59.903 55.000 0.50 0.00 43.04 2.39
734 811 0.036483 TCACATGCACGGCACATACT 60.036 50.000 0.50 0.00 43.04 2.12
735 812 0.804364 CACATGCACGGCACATACTT 59.196 50.000 0.50 0.00 43.04 2.24
736 813 2.006169 CACATGCACGGCACATACTTA 58.994 47.619 0.50 0.00 43.04 2.24
737 814 2.030823 CACATGCACGGCACATACTTAG 59.969 50.000 0.50 0.00 43.04 2.18
738 815 2.279741 CATGCACGGCACATACTTAGT 58.720 47.619 0.50 0.00 43.04 2.24
739 816 2.465860 TGCACGGCACATACTTAGTT 57.534 45.000 0.00 0.00 31.71 2.24
740 817 2.073056 TGCACGGCACATACTTAGTTG 58.927 47.619 0.00 0.00 31.71 3.16
741 818 2.289133 TGCACGGCACATACTTAGTTGA 60.289 45.455 0.00 0.00 31.71 3.18
742 819 2.936498 GCACGGCACATACTTAGTTGAT 59.064 45.455 0.00 0.00 0.00 2.57
743 820 4.116961 GCACGGCACATACTTAGTTGATA 58.883 43.478 0.00 0.00 0.00 2.15
744 821 4.569162 GCACGGCACATACTTAGTTGATAA 59.431 41.667 0.00 0.00 0.00 1.75
745 822 5.236478 GCACGGCACATACTTAGTTGATAAT 59.764 40.000 0.00 0.00 0.00 1.28
746 823 6.564125 GCACGGCACATACTTAGTTGATAATC 60.564 42.308 0.00 0.00 0.00 1.75
747 824 5.989777 ACGGCACATACTTAGTTGATAATCC 59.010 40.000 0.00 0.00 0.00 3.01
748 825 5.989168 CGGCACATACTTAGTTGATAATCCA 59.011 40.000 0.00 0.00 0.00 3.41
749 826 6.146184 CGGCACATACTTAGTTGATAATCCAG 59.854 42.308 0.00 0.00 0.00 3.86
750 827 7.217200 GGCACATACTTAGTTGATAATCCAGA 58.783 38.462 0.00 0.00 0.00 3.86
751 828 7.715249 GGCACATACTTAGTTGATAATCCAGAA 59.285 37.037 0.00 0.00 0.00 3.02
752 829 8.552034 GCACATACTTAGTTGATAATCCAGAAC 58.448 37.037 0.00 0.00 0.00 3.01
753 830 8.755941 CACATACTTAGTTGATAATCCAGAACG 58.244 37.037 0.00 0.00 0.00 3.95
754 831 8.692710 ACATACTTAGTTGATAATCCAGAACGA 58.307 33.333 0.00 0.00 0.00 3.85
755 832 9.698309 CATACTTAGTTGATAATCCAGAACGAT 57.302 33.333 0.00 0.00 0.00 3.73
758 835 9.449719 ACTTAGTTGATAATCCAGAACGATTTT 57.550 29.630 0.00 0.00 34.35 1.82
776 853 2.828874 TTTTGAAACCGGTCGAACAC 57.171 45.000 8.04 0.00 0.00 3.32
777 854 1.015868 TTTGAAACCGGTCGAACACC 58.984 50.000 8.04 0.00 42.69 4.16
784 861 3.250986 GGTCGAACACCGGCTTTC 58.749 61.111 0.00 3.02 43.55 2.62
785 862 2.322830 GGTCGAACACCGGCTTTCC 61.323 63.158 0.00 0.00 43.55 3.13
786 863 2.031465 TCGAACACCGGCTTTCCC 59.969 61.111 0.00 0.00 39.14 3.97
796 873 4.220413 GCTTTCCCGTTAGCCTCC 57.780 61.111 0.00 0.00 0.00 4.30
797 874 1.814169 GCTTTCCCGTTAGCCTCCG 60.814 63.158 0.00 0.00 0.00 4.63
798 875 1.895238 CTTTCCCGTTAGCCTCCGA 59.105 57.895 0.00 0.00 0.00 4.55
799 876 0.179108 CTTTCCCGTTAGCCTCCGAG 60.179 60.000 0.00 0.00 0.00 4.63
800 877 0.612732 TTTCCCGTTAGCCTCCGAGA 60.613 55.000 0.00 0.00 0.00 4.04
801 878 0.612732 TTCCCGTTAGCCTCCGAGAA 60.613 55.000 0.00 0.00 0.00 2.87
802 879 0.612732 TCCCGTTAGCCTCCGAGAAA 60.613 55.000 0.00 0.00 0.00 2.52
803 880 0.248289 CCCGTTAGCCTCCGAGAAAA 59.752 55.000 0.00 0.00 0.00 2.29
804 881 1.338389 CCCGTTAGCCTCCGAGAAAAA 60.338 52.381 0.00 0.00 0.00 1.94
805 882 1.730612 CCGTTAGCCTCCGAGAAAAAC 59.269 52.381 0.00 0.00 0.00 2.43
806 883 1.730612 CGTTAGCCTCCGAGAAAAACC 59.269 52.381 0.00 0.00 0.00 3.27
807 884 1.730612 GTTAGCCTCCGAGAAAAACCG 59.269 52.381 0.00 0.00 0.00 4.44
808 885 0.390735 TAGCCTCCGAGAAAAACCGC 60.391 55.000 0.00 0.00 0.00 5.68
809 886 1.671379 GCCTCCGAGAAAAACCGCT 60.671 57.895 0.00 0.00 0.00 5.52
810 887 0.390735 GCCTCCGAGAAAAACCGCTA 60.391 55.000 0.00 0.00 0.00 4.26
811 888 1.356938 CCTCCGAGAAAAACCGCTAC 58.643 55.000 0.00 0.00 0.00 3.58
812 889 1.337447 CCTCCGAGAAAAACCGCTACA 60.337 52.381 0.00 0.00 0.00 2.74
813 890 1.993370 CTCCGAGAAAAACCGCTACAG 59.007 52.381 0.00 0.00 0.00 2.74
814 891 1.076332 CCGAGAAAAACCGCTACAGG 58.924 55.000 0.00 0.00 37.30 4.00
815 892 1.337447 CCGAGAAAAACCGCTACAGGA 60.337 52.381 0.00 0.00 34.73 3.86
816 893 2.409975 CGAGAAAAACCGCTACAGGAA 58.590 47.619 0.00 0.00 34.73 3.36
817 894 2.412089 CGAGAAAAACCGCTACAGGAAG 59.588 50.000 0.00 0.00 34.73 3.46
818 895 3.660865 GAGAAAAACCGCTACAGGAAGA 58.339 45.455 0.00 0.00 34.73 2.87
819 896 4.254492 GAGAAAAACCGCTACAGGAAGAT 58.746 43.478 0.00 0.00 34.73 2.40
820 897 4.652822 AGAAAAACCGCTACAGGAAGATT 58.347 39.130 0.00 0.00 34.73 2.40
821 898 5.070685 AGAAAAACCGCTACAGGAAGATTT 58.929 37.500 0.00 0.00 34.73 2.17
822 899 5.535030 AGAAAAACCGCTACAGGAAGATTTT 59.465 36.000 0.00 0.00 34.73 1.82
823 900 5.784578 AAAACCGCTACAGGAAGATTTTT 57.215 34.783 0.00 0.00 34.73 1.94
824 901 6.887626 AAAACCGCTACAGGAAGATTTTTA 57.112 33.333 0.00 0.00 34.73 1.52
825 902 7.462571 AAAACCGCTACAGGAAGATTTTTAT 57.537 32.000 0.00 0.00 34.73 1.40
826 903 7.462571 AAACCGCTACAGGAAGATTTTTATT 57.537 32.000 0.00 0.00 34.73 1.40
827 904 7.462571 AACCGCTACAGGAAGATTTTTATTT 57.537 32.000 0.00 0.00 34.73 1.40
828 905 7.462571 ACCGCTACAGGAAGATTTTTATTTT 57.537 32.000 0.00 0.00 34.73 1.82
829 906 7.892609 ACCGCTACAGGAAGATTTTTATTTTT 58.107 30.769 0.00 0.00 34.73 1.94
830 907 8.027189 ACCGCTACAGGAAGATTTTTATTTTTC 58.973 33.333 0.00 0.00 34.73 2.29
831 908 8.026607 CCGCTACAGGAAGATTTTTATTTTTCA 58.973 33.333 0.00 0.00 0.00 2.69
832 909 9.405587 CGCTACAGGAAGATTTTTATTTTTCAA 57.594 29.630 0.00 0.00 0.00 2.69
863 940 3.229276 TGAATTGCAAAATGCTACCGG 57.771 42.857 1.71 0.00 45.31 5.28
864 941 1.926510 GAATTGCAAAATGCTACCGGC 59.073 47.619 1.71 0.00 45.31 6.13
865 942 0.175531 ATTGCAAAATGCTACCGGCC 59.824 50.000 1.71 0.00 45.31 6.13
866 943 2.102161 GCAAAATGCTACCGGCCG 59.898 61.111 21.04 21.04 40.96 6.13
867 944 2.696759 GCAAAATGCTACCGGCCGT 61.697 57.895 26.12 14.84 40.96 5.68
868 945 1.136565 CAAAATGCTACCGGCCGTG 59.863 57.895 26.12 18.04 40.92 4.94
869 946 1.003112 AAAATGCTACCGGCCGTGA 60.003 52.632 26.12 10.48 40.92 4.35
870 947 1.303091 AAAATGCTACCGGCCGTGAC 61.303 55.000 26.12 11.10 40.92 3.67
871 948 2.180159 AAATGCTACCGGCCGTGACT 62.180 55.000 26.12 5.72 40.92 3.41
872 949 1.324740 AATGCTACCGGCCGTGACTA 61.325 55.000 26.12 7.81 40.92 2.59
873 950 1.113517 ATGCTACCGGCCGTGACTAT 61.114 55.000 26.12 9.97 40.92 2.12
874 951 0.466007 TGCTACCGGCCGTGACTATA 60.466 55.000 26.12 5.42 40.92 1.31
875 952 0.886563 GCTACCGGCCGTGACTATAT 59.113 55.000 26.12 1.02 34.27 0.86
876 953 1.402456 GCTACCGGCCGTGACTATATG 60.402 57.143 26.12 7.62 34.27 1.78
889 966 6.366332 CCGTGACTATATGTATTCCTGAAAGC 59.634 42.308 0.00 0.00 0.00 3.51
915 993 4.034048 AGCTATGCAATGCGTAGTAAACAC 59.966 41.667 28.62 15.09 46.36 3.32
916 994 3.757745 ATGCAATGCGTAGTAAACACC 57.242 42.857 0.00 0.00 0.00 4.16
917 995 1.807742 TGCAATGCGTAGTAAACACCC 59.192 47.619 0.00 0.00 0.00 4.61
918 996 1.807742 GCAATGCGTAGTAAACACCCA 59.192 47.619 0.00 0.00 0.00 4.51
919 997 2.413634 GCAATGCGTAGTAAACACCCAC 60.414 50.000 0.00 0.00 0.00 4.61
920 998 2.809119 CAATGCGTAGTAAACACCCACA 59.191 45.455 0.00 0.00 0.00 4.17
921 999 2.843401 TGCGTAGTAAACACCCACAT 57.157 45.000 0.00 0.00 0.00 3.21
922 1000 3.128852 TGCGTAGTAAACACCCACATT 57.871 42.857 0.00 0.00 0.00 2.71
926 1015 6.404708 TGCGTAGTAAACACCCACATTTATA 58.595 36.000 0.00 0.00 0.00 0.98
929 1018 7.568134 GCGTAGTAAACACCCACATTTATATCG 60.568 40.741 0.00 0.00 0.00 2.92
1012 1117 3.545574 TATCCATGCCGGCTCGCA 61.546 61.111 29.70 7.47 44.35 5.10
1104 1210 1.995626 ATCCCCGACCCTTGTCCAG 60.996 63.158 0.00 0.00 38.32 3.86
1111 1217 0.680061 GACCCTTGTCCAGTCGAAGT 59.320 55.000 0.00 0.00 35.34 3.01
1197 1303 2.666098 CCTTCCCATCCCGAACGGT 61.666 63.158 12.23 0.00 0.00 4.83
1205 1311 2.224185 CCATCCCGAACGGTATCATGAA 60.224 50.000 12.23 0.00 0.00 2.57
1252 1358 2.683933 TCTCCGGCCTGAACTCCC 60.684 66.667 0.00 0.00 0.00 4.30
1434 1540 0.911769 TGATGCAGTGGAGGTAAGGG 59.088 55.000 0.00 0.00 0.00 3.95
1458 1564 1.002011 GGGCAGGTCCTTCTTGTCC 60.002 63.158 0.00 0.00 40.53 4.02
1525 2811 1.734465 CTTCCTGTGCCTTCTTTAGCG 59.266 52.381 0.00 0.00 0.00 4.26
1584 2870 2.095469 GTCGTCGACGTCGTCTCC 59.905 66.667 34.40 20.14 40.80 3.71
1650 2938 8.495949 ACGAGAAAATTACAGTAGTGTCAAATG 58.504 33.333 6.44 0.00 38.19 2.32
1704 3008 0.455410 GATGCTGCGAGAGACTCACT 59.545 55.000 5.02 0.00 0.00 3.41
1710 3014 1.869690 CGAGAGACTCACTGCGACA 59.130 57.895 5.02 0.00 0.00 4.35
1731 3035 1.741770 GGCGGCGATGAAAGTGTCT 60.742 57.895 12.98 0.00 0.00 3.41
1740 3044 3.121944 CGATGAAAGTGTCTGTGTACAGC 59.878 47.826 7.14 3.81 43.46 4.40
1793 3097 0.600518 CCGATCATGCTCTGCTCCTG 60.601 60.000 0.00 0.00 0.00 3.86
1812 3116 1.675801 CTCCTCCTGCTGCTTGTCA 59.324 57.895 0.00 0.00 0.00 3.58
1866 3170 0.106868 TCTCCCCGTCGATGAGCTTA 60.107 55.000 6.11 0.00 0.00 3.09
1905 3209 4.717629 CTCGTTGCGTCGGCCAGA 62.718 66.667 2.24 0.00 38.85 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 76 1.009335 CACTGACGACAACCGACGA 60.009 57.895 0.00 0.00 41.76 4.20
165 181 2.125350 CTTCTGCTCCGCCTCACC 60.125 66.667 0.00 0.00 0.00 4.02
215 237 1.067582 GATGGGGATCACCGTCGAC 59.932 63.158 20.44 5.18 41.60 4.20
336 370 0.108186 TCGTCGGAGCTACGGAACTA 60.108 55.000 20.39 0.00 40.68 2.24
481 538 7.943079 TCAAAAGAGCAAATCCAATAGATGA 57.057 32.000 0.00 0.00 34.56 2.92
493 550 8.420222 TCTAAATTGATGGTTCAAAAGAGCAAA 58.580 29.630 0.00 0.00 44.70 3.68
505 563 6.153340 CCAACAGATGGTCTAAATTGATGGTT 59.847 38.462 0.00 0.00 44.85 3.67
577 654 3.244976 GCGGTCCAAAATCAAAGATGTG 58.755 45.455 0.00 0.00 0.00 3.21
616 693 2.346803 TGACTCGGTGCATTTTAGAGC 58.653 47.619 0.00 0.00 32.60 4.09
617 694 3.997021 AGTTGACTCGGTGCATTTTAGAG 59.003 43.478 0.00 0.00 35.28 2.43
618 695 3.745975 CAGTTGACTCGGTGCATTTTAGA 59.254 43.478 0.00 0.00 0.00 2.10
619 696 3.667960 GCAGTTGACTCGGTGCATTTTAG 60.668 47.826 0.00 0.00 35.91 1.85
620 697 2.225491 GCAGTTGACTCGGTGCATTTTA 59.775 45.455 0.00 0.00 35.91 1.52
621 698 1.001378 GCAGTTGACTCGGTGCATTTT 60.001 47.619 0.00 0.00 35.91 1.82
622 699 0.593128 GCAGTTGACTCGGTGCATTT 59.407 50.000 0.00 0.00 35.91 2.32
623 700 0.250467 AGCAGTTGACTCGGTGCATT 60.250 50.000 0.00 0.00 38.44 3.56
624 701 0.250467 AAGCAGTTGACTCGGTGCAT 60.250 50.000 0.00 0.00 38.44 3.96
625 702 0.463654 AAAGCAGTTGACTCGGTGCA 60.464 50.000 0.00 0.00 38.44 4.57
626 703 0.235926 GAAAGCAGTTGACTCGGTGC 59.764 55.000 0.00 0.00 36.10 5.01
627 704 1.581934 TGAAAGCAGTTGACTCGGTG 58.418 50.000 0.00 0.00 0.00 4.94
628 705 2.325583 TTGAAAGCAGTTGACTCGGT 57.674 45.000 0.00 0.00 0.00 4.69
629 706 5.580691 TGTATATTGAAAGCAGTTGACTCGG 59.419 40.000 0.00 0.00 0.00 4.63
630 707 6.090763 TGTGTATATTGAAAGCAGTTGACTCG 59.909 38.462 0.00 0.00 0.00 4.18
631 708 7.364522 TGTGTATATTGAAAGCAGTTGACTC 57.635 36.000 0.00 0.00 0.00 3.36
632 709 7.744087 TTGTGTATATTGAAAGCAGTTGACT 57.256 32.000 0.00 0.00 0.00 3.41
633 710 8.853345 CATTTGTGTATATTGAAAGCAGTTGAC 58.147 33.333 0.00 0.00 0.00 3.18
634 711 8.575589 ACATTTGTGTATATTGAAAGCAGTTGA 58.424 29.630 0.00 0.00 0.00 3.18
635 712 8.746922 ACATTTGTGTATATTGAAAGCAGTTG 57.253 30.769 0.00 0.00 0.00 3.16
696 773 8.995220 GCATGTGACCCGACTTAATTAATATAA 58.005 33.333 0.00 0.00 0.00 0.98
697 774 8.151596 TGCATGTGACCCGACTTAATTAATATA 58.848 33.333 0.00 0.00 0.00 0.86
698 775 6.995686 TGCATGTGACCCGACTTAATTAATAT 59.004 34.615 0.00 0.00 0.00 1.28
699 776 6.259167 GTGCATGTGACCCGACTTAATTAATA 59.741 38.462 0.00 0.00 0.00 0.98
700 777 5.065988 GTGCATGTGACCCGACTTAATTAAT 59.934 40.000 0.00 0.00 0.00 1.40
701 778 4.393680 GTGCATGTGACCCGACTTAATTAA 59.606 41.667 0.00 0.00 0.00 1.40
702 779 3.936453 GTGCATGTGACCCGACTTAATTA 59.064 43.478 0.00 0.00 0.00 1.40
703 780 2.747446 GTGCATGTGACCCGACTTAATT 59.253 45.455 0.00 0.00 0.00 1.40
704 781 2.356135 GTGCATGTGACCCGACTTAAT 58.644 47.619 0.00 0.00 0.00 1.40
705 782 1.803334 GTGCATGTGACCCGACTTAA 58.197 50.000 0.00 0.00 0.00 1.85
706 783 0.389296 CGTGCATGTGACCCGACTTA 60.389 55.000 0.00 0.00 0.00 2.24
707 784 1.667830 CGTGCATGTGACCCGACTT 60.668 57.895 0.00 0.00 0.00 3.01
708 785 2.048222 CGTGCATGTGACCCGACT 60.048 61.111 0.00 0.00 0.00 4.18
709 786 3.118454 CCGTGCATGTGACCCGAC 61.118 66.667 4.96 0.00 0.00 4.79
712 789 3.737172 GTGCCGTGCATGTGACCC 61.737 66.667 4.96 0.00 41.91 4.46
713 790 1.024046 TATGTGCCGTGCATGTGACC 61.024 55.000 4.96 0.00 41.91 4.02
714 791 0.096976 GTATGTGCCGTGCATGTGAC 59.903 55.000 4.96 1.48 41.91 3.67
715 792 0.036483 AGTATGTGCCGTGCATGTGA 60.036 50.000 4.96 0.00 41.91 3.58
716 793 0.804364 AAGTATGTGCCGTGCATGTG 59.196 50.000 4.96 0.00 41.91 3.21
717 794 2.279741 CTAAGTATGTGCCGTGCATGT 58.720 47.619 4.96 0.00 41.91 3.21
718 795 2.279741 ACTAAGTATGTGCCGTGCATG 58.720 47.619 0.00 0.00 41.91 4.06
719 796 2.677836 CAACTAAGTATGTGCCGTGCAT 59.322 45.455 1.90 0.00 41.91 3.96
720 797 2.073056 CAACTAAGTATGTGCCGTGCA 58.927 47.619 0.00 0.00 35.60 4.57
721 798 2.343101 TCAACTAAGTATGTGCCGTGC 58.657 47.619 0.00 0.00 0.00 5.34
722 799 6.073765 GGATTATCAACTAAGTATGTGCCGTG 60.074 42.308 0.00 0.00 0.00 4.94
723 800 5.989777 GGATTATCAACTAAGTATGTGCCGT 59.010 40.000 0.00 0.00 0.00 5.68
724 801 5.989168 TGGATTATCAACTAAGTATGTGCCG 59.011 40.000 0.00 0.00 0.00 5.69
725 802 7.217200 TCTGGATTATCAACTAAGTATGTGCC 58.783 38.462 0.00 0.00 0.00 5.01
726 803 8.552034 GTTCTGGATTATCAACTAAGTATGTGC 58.448 37.037 0.00 0.00 0.00 4.57
727 804 8.755941 CGTTCTGGATTATCAACTAAGTATGTG 58.244 37.037 0.00 0.00 0.00 3.21
728 805 8.692710 TCGTTCTGGATTATCAACTAAGTATGT 58.307 33.333 0.00 0.00 0.00 2.29
729 806 9.698309 ATCGTTCTGGATTATCAACTAAGTATG 57.302 33.333 0.00 0.00 0.00 2.39
732 809 9.449719 AAAATCGTTCTGGATTATCAACTAAGT 57.550 29.630 0.00 0.00 35.65 2.24
756 833 2.159407 GGTGTTCGACCGGTTTCAAAAA 60.159 45.455 9.42 0.00 34.02 1.94
757 834 1.401199 GGTGTTCGACCGGTTTCAAAA 59.599 47.619 9.42 0.00 34.02 2.44
758 835 1.015868 GGTGTTCGACCGGTTTCAAA 58.984 50.000 9.42 0.00 34.02 2.69
759 836 2.692817 GGTGTTCGACCGGTTTCAA 58.307 52.632 9.42 0.00 34.02 2.69
760 837 4.442018 GGTGTTCGACCGGTTTCA 57.558 55.556 9.42 3.02 34.02 2.69
767 844 2.322830 GGAAAGCCGGTGTTCGACC 61.323 63.158 1.90 0.00 42.43 4.79
768 845 2.322830 GGGAAAGCCGGTGTTCGAC 61.323 63.158 1.90 0.42 42.43 4.20
769 846 2.031465 GGGAAAGCCGGTGTTCGA 59.969 61.111 1.90 0.00 42.43 3.71
770 847 3.419759 CGGGAAAGCCGGTGTTCG 61.420 66.667 1.90 0.00 38.88 3.95
771 848 0.603439 TAACGGGAAAGCCGGTGTTC 60.603 55.000 1.90 7.03 45.89 3.18
772 849 0.604511 CTAACGGGAAAGCCGGTGTT 60.605 55.000 1.90 0.00 45.89 3.32
773 850 1.004200 CTAACGGGAAAGCCGGTGT 60.004 57.895 1.90 0.00 45.89 4.16
774 851 2.396157 GCTAACGGGAAAGCCGGTG 61.396 63.158 1.90 0.00 45.89 4.94
779 856 1.814169 CGGAGGCTAACGGGAAAGC 60.814 63.158 3.40 0.00 38.03 3.51
780 857 0.179108 CTCGGAGGCTAACGGGAAAG 60.179 60.000 5.09 0.00 30.70 2.62
781 858 0.612732 TCTCGGAGGCTAACGGGAAA 60.613 55.000 10.76 0.00 36.53 3.13
782 859 0.612732 TTCTCGGAGGCTAACGGGAA 60.613 55.000 18.81 18.81 46.20 3.97
783 860 0.612732 TTTCTCGGAGGCTAACGGGA 60.613 55.000 9.31 9.31 37.90 5.14
784 861 0.248289 TTTTCTCGGAGGCTAACGGG 59.752 55.000 4.96 7.80 0.00 5.28
785 862 1.730612 GTTTTTCTCGGAGGCTAACGG 59.269 52.381 4.96 3.11 0.00 4.44
786 863 1.730612 GGTTTTTCTCGGAGGCTAACG 59.269 52.381 4.96 4.85 0.00 3.18
787 864 1.730612 CGGTTTTTCTCGGAGGCTAAC 59.269 52.381 4.96 6.80 0.00 2.34
788 865 1.942586 GCGGTTTTTCTCGGAGGCTAA 60.943 52.381 4.96 0.00 0.00 3.09
789 866 0.390735 GCGGTTTTTCTCGGAGGCTA 60.391 55.000 4.96 0.00 0.00 3.93
790 867 1.671379 GCGGTTTTTCTCGGAGGCT 60.671 57.895 4.96 0.00 0.00 4.58
791 868 0.390735 TAGCGGTTTTTCTCGGAGGC 60.391 55.000 4.96 0.00 0.00 4.70
792 869 1.337447 TGTAGCGGTTTTTCTCGGAGG 60.337 52.381 4.96 0.00 0.00 4.30
793 870 1.993370 CTGTAGCGGTTTTTCTCGGAG 59.007 52.381 0.00 0.00 0.00 4.63
794 871 1.337447 CCTGTAGCGGTTTTTCTCGGA 60.337 52.381 0.00 0.00 0.00 4.55
795 872 1.076332 CCTGTAGCGGTTTTTCTCGG 58.924 55.000 0.00 0.00 0.00 4.63
796 873 2.074547 TCCTGTAGCGGTTTTTCTCG 57.925 50.000 0.00 0.00 0.00 4.04
797 874 3.660865 TCTTCCTGTAGCGGTTTTTCTC 58.339 45.455 0.00 0.00 0.00 2.87
798 875 3.764237 TCTTCCTGTAGCGGTTTTTCT 57.236 42.857 0.00 0.00 0.00 2.52
799 876 5.372547 AAATCTTCCTGTAGCGGTTTTTC 57.627 39.130 0.00 0.00 0.00 2.29
800 877 5.784578 AAAATCTTCCTGTAGCGGTTTTT 57.215 34.783 0.00 0.00 0.00 1.94
801 878 5.784578 AAAAATCTTCCTGTAGCGGTTTT 57.215 34.783 0.00 0.00 0.00 2.43
802 879 7.462571 AATAAAAATCTTCCTGTAGCGGTTT 57.537 32.000 0.00 0.00 0.00 3.27
803 880 7.462571 AAATAAAAATCTTCCTGTAGCGGTT 57.537 32.000 0.00 0.00 0.00 4.44
804 881 7.462571 AAAATAAAAATCTTCCTGTAGCGGT 57.537 32.000 0.00 0.00 0.00 5.68
805 882 8.026607 TGAAAAATAAAAATCTTCCTGTAGCGG 58.973 33.333 0.00 0.00 0.00 5.52
806 883 8.964420 TGAAAAATAAAAATCTTCCTGTAGCG 57.036 30.769 0.00 0.00 0.00 4.26
849 926 2.102161 CGGCCGGTAGCATTTTGC 59.898 61.111 20.10 0.00 46.50 3.68
850 927 1.136565 CACGGCCGGTAGCATTTTG 59.863 57.895 31.76 11.43 46.50 2.44
851 928 1.003112 TCACGGCCGGTAGCATTTT 60.003 52.632 31.76 0.57 46.50 1.82
852 929 1.743995 GTCACGGCCGGTAGCATTT 60.744 57.895 31.76 1.49 46.50 2.32
853 930 1.324740 TAGTCACGGCCGGTAGCATT 61.325 55.000 31.76 10.39 46.50 3.56
854 931 1.113517 ATAGTCACGGCCGGTAGCAT 61.114 55.000 31.76 13.92 46.50 3.79
855 932 0.466007 TATAGTCACGGCCGGTAGCA 60.466 55.000 31.76 12.00 46.50 3.49
856 933 0.886563 ATATAGTCACGGCCGGTAGC 59.113 55.000 31.76 16.22 42.60 3.58
857 934 1.884579 ACATATAGTCACGGCCGGTAG 59.115 52.381 31.76 18.96 0.00 3.18
858 935 1.985473 ACATATAGTCACGGCCGGTA 58.015 50.000 31.76 14.55 0.00 4.02
859 936 1.985473 TACATATAGTCACGGCCGGT 58.015 50.000 31.76 16.36 0.00 5.28
860 937 3.508762 GAATACATATAGTCACGGCCGG 58.491 50.000 31.76 18.67 0.00 6.13
861 938 3.192844 AGGAATACATATAGTCACGGCCG 59.807 47.826 26.86 26.86 0.00 6.13
862 939 4.219944 TCAGGAATACATATAGTCACGGCC 59.780 45.833 0.00 0.00 0.00 6.13
863 940 5.386958 TCAGGAATACATATAGTCACGGC 57.613 43.478 0.00 0.00 0.00 5.68
864 941 6.366332 GCTTTCAGGAATACATATAGTCACGG 59.634 42.308 0.00 0.00 0.00 4.94
865 942 6.923508 TGCTTTCAGGAATACATATAGTCACG 59.076 38.462 0.00 0.00 0.00 4.35
866 943 7.710907 TGTGCTTTCAGGAATACATATAGTCAC 59.289 37.037 0.00 0.00 0.00 3.67
867 944 7.791029 TGTGCTTTCAGGAATACATATAGTCA 58.209 34.615 0.00 0.00 0.00 3.41
868 945 7.095439 GCTGTGCTTTCAGGAATACATATAGTC 60.095 40.741 6.35 0.00 36.12 2.59
869 946 6.708054 GCTGTGCTTTCAGGAATACATATAGT 59.292 38.462 6.35 0.00 36.12 2.12
870 947 6.933521 AGCTGTGCTTTCAGGAATACATATAG 59.066 38.462 0.00 0.00 33.89 1.31
871 948 6.830912 AGCTGTGCTTTCAGGAATACATATA 58.169 36.000 0.00 0.00 33.89 0.86
872 949 5.688807 AGCTGTGCTTTCAGGAATACATAT 58.311 37.500 0.00 0.00 33.89 1.78
873 950 5.102953 AGCTGTGCTTTCAGGAATACATA 57.897 39.130 0.00 0.00 33.89 2.29
874 951 3.960571 AGCTGTGCTTTCAGGAATACAT 58.039 40.909 0.00 0.00 33.89 2.29
875 952 3.423539 AGCTGTGCTTTCAGGAATACA 57.576 42.857 0.00 0.00 33.89 2.29
876 953 4.260948 GCATAGCTGTGCTTTCAGGAATAC 60.261 45.833 26.32 0.00 41.82 1.89
889 966 1.935873 ACTACGCATTGCATAGCTGTG 59.064 47.619 11.43 6.03 26.38 3.66
915 993 3.303725 CGGCACAACGATATAAATGTGGG 60.304 47.826 13.18 0.00 42.56 4.61
916 994 3.558006 TCGGCACAACGATATAAATGTGG 59.442 43.478 13.18 2.29 42.56 4.17
917 995 4.787381 TCGGCACAACGATATAAATGTG 57.213 40.909 8.96 8.96 44.55 3.21
929 1018 5.116882 ACTAGAAGGAATAATCGGCACAAC 58.883 41.667 0.00 0.00 0.00 3.32
1012 1117 0.321021 CTGGAAGCTCTCTGCACACT 59.679 55.000 0.00 0.00 45.94 3.55
1104 1210 1.132643 ACGCTGATCCAGTACTTCGAC 59.867 52.381 0.00 0.00 33.43 4.20
1111 1217 0.108186 CTTGGCACGCTGATCCAGTA 60.108 55.000 0.00 0.00 33.43 2.74
1197 1303 1.416401 GCCGAGGGGAAGTTCATGATA 59.584 52.381 5.01 0.00 34.06 2.15
1434 1540 2.936032 AAGGACCTGCCCCACCTC 60.936 66.667 0.00 0.00 37.37 3.85
1476 1582 3.699894 CACCTCAGCCTCAGCGGT 61.700 66.667 0.00 0.00 46.67 5.68
1480 1586 2.433838 CACGCACCTCAGCCTCAG 60.434 66.667 0.00 0.00 0.00 3.35
1710 3014 2.040544 CACTTTCATCGCCGCCCTT 61.041 57.895 0.00 0.00 0.00 3.95
1740 3044 1.153667 GCAGAAGTCAGAGCCCGAG 60.154 63.158 0.00 0.00 0.00 4.63
1793 3097 1.744741 GACAAGCAGCAGGAGGAGC 60.745 63.158 0.00 0.00 0.00 4.70
2023 3327 4.873129 CGGAGCGGACATGTCCCG 62.873 72.222 34.05 27.39 46.96 5.14
2196 3503 2.579787 GACCTCATGTCCGACGCG 60.580 66.667 3.53 3.53 38.09 6.01
2226 3540 2.626780 CGTCGTGCACCTCCTCTCA 61.627 63.158 12.15 0.00 0.00 3.27
2288 3602 3.701604 GACTACAGGGCGCTCACCG 62.702 68.421 11.40 0.00 40.75 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.