AutoCloner

Multiple sequence alignment - TraesCS2A01G533700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G533700	chr2A	100.000	3521	0	0	1	3521	749522738	749526258	0.000000e+00	6503.0
1	TraesCS2A01G533700	chr2A	92.027	1781	106	24	727	2492	749448344	749446585	0.000000e+00	2470.0
2	TraesCS2A01G533700	chr2A	95.616	958	41	1	2560	3516	532077132	532078089	0.000000e+00	1535.0
3	TraesCS2A01G533700	chr2A	91.870	123	6	3	37	159	749450753	749450635	6.040000e-38	169.0
4	TraesCS2A01G533700	chr2A	79.000	100	7	7	58	152	749441244	749441334	4.910000e-04	56.5
5	TraesCS2A01G533700	chr2D	92.754	1863	85	20	636	2497	618532653	618530840	0.000000e+00	2647.0
6	TraesCS2A01G533700	chr2D	95.022	1366	61	4	1197	2562	618645451	618646809	0.000000e+00	2139.0
7	TraesCS2A01G533700	chr2D	88.797	241	20	2	966	1206	618644849	618645082	4.450000e-74	289.0
8	TraesCS2A01G533700	chr2D	89.720	214	13	3	5	210	618533501	618533289	7.490000e-67	265.0
9	TraesCS2A01G533700	chr2D	96.000	100	4	0	518	617	618532735	618532636	2.810000e-36	163.0
10	TraesCS2A01G533700	chr2D	86.000	100	5	4	49	145	618568455	618568548	8.040000e-17	99.0
11	TraesCS2A01G533700	chr2B	92.660	1812	97	18	690	2492	755038655	755036871	0.000000e+00	2577.0
12	TraesCS2A01G533700	chr2B	93.351	1143	50	14	819	1958	755054420	755055539	0.000000e+00	1666.0
13	TraesCS2A01G533700	chr2B	86.013	958	127	5	2562	3516	396418083	396417130	0.000000e+00	1020.0
14	TraesCS2A01G533700	chr2B	84.320	963	129	17	2561	3516	349932090	349933037	0.000000e+00	922.0
15	TraesCS2A01G533700	chr2B	94.669	544	29	0	1949	2492	755056005	755056548	0.000000e+00	845.0
16	TraesCS2A01G533700	chr2B	90.545	624	43	8	5	617	755053609	755054227	0.000000e+00	811.0
17	TraesCS2A01G533700	chr2B	90.000	590	33	12	39	617	755039338	755038764	0.000000e+00	739.0
18	TraesCS2A01G533700	chr2B	86.341	205	15	5	638	839	755054212	755054406	9.900000e-51	211.0
19	TraesCS2A01G533700	chr5B	90.404	1511	129	5	1004	2504	233922282	233923786	0.000000e+00	1973.0
20	TraesCS2A01G533700	chr5A	90.007	1511	135	5	1004	2504	290547997	290549501	0.000000e+00	1940.0
21	TraesCS2A01G533700	chr5A	96.552	957	31	2	2561	3516	654558756	654559711	0.000000e+00	1583.0
22	TraesCS2A01G533700	chr5D	89.940	1511	136	5	1004	2504	217755034	217756538	0.000000e+00	1934.0
23	TraesCS2A01G533700	chr5D	91.719	797	63	2	2560	3355	530850180	530850974	0.000000e+00	1103.0
24	TraesCS2A01G533700	chr3A	94.880	957	45	3	2561	3516	581628545	581627592	0.000000e+00	1493.0
25	TraesCS2A01G533700	chr4D	82.462	1511	223	18	1015	2498	115543837	115542342	0.000000e+00	1284.0
26	TraesCS2A01G533700	chr6B	84.984	959	137	7	2561	3516	51135761	51134807	0.000000e+00	966.0
27	TraesCS2A01G533700	chr6D	86.667	855	106	8	2561	3411	97770841	97771691	0.000000e+00	941.0
28	TraesCS2A01G533700	chr3B	86.275	867	113	6	2561	3424	694178714	694177851	0.000000e+00	937.0
29	TraesCS2A01G533700	chr7D	100.000	33	0	0	425	457	392633407	392633439	1.060000e-05	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G533700	chr2A	749522738	749526258	3520	False	6503.00	6503	100.000000	1	3521	1	chr2A.!!$F3	3520
1	TraesCS2A01G533700	chr2A	532077132	532078089	957	False	1535.00	1535	95.616000	2560	3516	1	chr2A.!!$F1	956
2	TraesCS2A01G533700	chr2A	749446585	749450753	4168	True	1319.50	2470	91.948500	37	2492	2	chr2A.!!$R1	2455
3	TraesCS2A01G533700	chr2D	618644849	618646809	1960	False	1214.00	2139	91.909500	966	2562	2	chr2D.!!$F2	1596
4	TraesCS2A01G533700	chr2D	618530840	618533501	2661	True	1025.00	2647	92.824667	5	2497	3	chr2D.!!$R1	2492
5	TraesCS2A01G533700	chr2B	755036871	755039338	2467	True	1658.00	2577	91.330000	39	2492	2	chr2B.!!$R2	2453
6	TraesCS2A01G533700	chr2B	396417130	396418083	953	True	1020.00	1020	86.013000	2562	3516	1	chr2B.!!$R1	954
7	TraesCS2A01G533700	chr2B	349932090	349933037	947	False	922.00	922	84.320000	2561	3516	1	chr2B.!!$F1	955
8	TraesCS2A01G533700	chr2B	755053609	755056548	2939	False	883.25	1666	91.226500	5	2492	4	chr2B.!!$F2	2487
9	TraesCS2A01G533700	chr5B	233922282	233923786	1504	False	1973.00	1973	90.404000	1004	2504	1	chr5B.!!$F1	1500
10	TraesCS2A01G533700	chr5A	290547997	290549501	1504	False	1940.00	1940	90.007000	1004	2504	1	chr5A.!!$F1	1500
11	TraesCS2A01G533700	chr5A	654558756	654559711	955	False	1583.00	1583	96.552000	2561	3516	1	chr5A.!!$F2	955
12	TraesCS2A01G533700	chr5D	217755034	217756538	1504	False	1934.00	1934	89.940000	1004	2504	1	chr5D.!!$F1	1500
13	TraesCS2A01G533700	chr5D	530850180	530850974	794	False	1103.00	1103	91.719000	2560	3355	1	chr5D.!!$F2	795
14	TraesCS2A01G533700	chr3A	581627592	581628545	953	True	1493.00	1493	94.880000	2561	3516	1	chr3A.!!$R1	955
15	TraesCS2A01G533700	chr4D	115542342	115543837	1495	True	1284.00	1284	82.462000	1015	2498	1	chr4D.!!$R1	1483
16	TraesCS2A01G533700	chr6B	51134807	51135761	954	True	966.00	966	84.984000	2561	3516	1	chr6B.!!$R1	955
17	TraesCS2A01G533700	chr6D	97770841	97771691	850	False	941.00	941	86.667000	2561	3411	1	chr6D.!!$F1	850
18	TraesCS2A01G533700	chr3B	694177851	694178714	863	True	937.00	937	86.275000	2561	3424	1	chr3B.!!$R1	863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
790	3076	0.623723	ACGGGCCCAACTGTCATTAT	59.376	50.0	24.92	0.0	0.0	1.28	F
1908	4635	0.603569	ACATCGTCGTCAGCTTCCTT	59.396	50.0	0.00	0.0	0.0	3.36	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2028	5248	0.179054	GCAGGCTCATCAGATGCTCA	60.179	55.0	5.41	0.0	33.28	4.26	R
3080	6303	0.108585	GCTCACTTGGAGTTGGTGGA	59.891	55.0	0.00	0.0	45.88	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	1.525596	GACGAACGAGACGATGTGAG	58.474	55.000	0.14	0.00	34.70	3.51
33	34	2.046892	ACGATGTGAGGTGCCAGC	60.047	61.111	0.00	0.00	0.00	4.85
34	35	2.267006	CGATGTGAGGTGCCAGCT	59.733	61.111	0.00	0.00	0.00	4.24
324	701	4.637483	ATTTCACGAATGTGGCCTAATG	57.363	40.909	3.32	0.00	46.42	1.90
325	702	2.779755	TCACGAATGTGGCCTAATGT	57.220	45.000	3.32	0.00	46.42	2.71
465	846	4.935808	AGAATGGTACTTTCGACAATGTCC	59.064	41.667	7.91	0.00	0.00	4.02
533	2433	2.482664	CGAAGGAGACACTGCATAGCAT	60.483	50.000	0.00	0.00	38.13	3.79
609	2509	3.460857	GGCGACCATCAGATCTAGTTT	57.539	47.619	0.00	0.00	0.00	2.66
610	2510	4.585955	GGCGACCATCAGATCTAGTTTA	57.414	45.455	0.00	0.00	0.00	2.01
611	2511	4.551388	GGCGACCATCAGATCTAGTTTAG	58.449	47.826	0.00	0.00	0.00	1.85
612	2512	3.984633	GCGACCATCAGATCTAGTTTAGC	59.015	47.826	0.00	0.00	0.00	3.09
613	2513	4.499865	GCGACCATCAGATCTAGTTTAGCA	60.500	45.833	0.00	0.00	0.00	3.49
614	2514	5.592054	CGACCATCAGATCTAGTTTAGCAA	58.408	41.667	0.00	0.00	0.00	3.91
615	2515	6.219473	CGACCATCAGATCTAGTTTAGCAAT	58.781	40.000	0.00	0.00	0.00	3.56
616	2516	6.703607	CGACCATCAGATCTAGTTTAGCAATT	59.296	38.462	0.00	0.00	0.00	2.32
617	2517	7.095857	CGACCATCAGATCTAGTTTAGCAATTC	60.096	40.741	0.00	0.00	0.00	2.17
618	2518	7.800092	ACCATCAGATCTAGTTTAGCAATTCT	58.200	34.615	0.00	0.00	0.00	2.40
619	2519	8.270744	ACCATCAGATCTAGTTTAGCAATTCTT	58.729	33.333	0.00	0.00	0.00	2.52
620	2520	8.557864	CCATCAGATCTAGTTTAGCAATTCTTG	58.442	37.037	0.00	0.00	0.00	3.02
621	2521	9.107177	CATCAGATCTAGTTTAGCAATTCTTGT	57.893	33.333	0.00	0.00	0.00	3.16
622	2522	9.678260	ATCAGATCTAGTTTAGCAATTCTTGTT	57.322	29.630	0.00	0.00	0.00	2.83
623	2523	9.507329	TCAGATCTAGTTTAGCAATTCTTGTTT	57.493	29.630	0.00	0.00	0.00	2.83
624	2524	9.766277	CAGATCTAGTTTAGCAATTCTTGTTTC	57.234	33.333	0.00	0.00	0.00	2.78
625	2525	9.507329	AGATCTAGTTTAGCAATTCTTGTTTCA	57.493	29.630	0.00	0.00	0.00	2.69
631	2531	9.651913	AGTTTAGCAATTCTTGTTTCAAAAAGA	57.348	25.926	0.00	0.00	0.00	2.52
706	2688	4.725359	TCTTTGTTGATCATTCATGCACG	58.275	39.130	0.00	0.00	0.00	5.34
723	3008	2.896801	CGCACAGGCACAACACTCC	61.897	63.158	0.00	0.00	41.24	3.85
762	3047	2.352960	GCCAACAGCTCCTTAATTCGAG	59.647	50.000	0.00	0.00	38.99	4.04
790	3076	0.623723	ACGGGCCCAACTGTCATTAT	59.376	50.000	24.92	0.00	0.00	1.28
791	3077	1.005450	ACGGGCCCAACTGTCATTATT	59.995	47.619	24.92	0.00	0.00	1.40
836	3161	1.463444	GCACGTACTCCATGTGTTTCC	59.537	52.381	0.00	0.00	44.69	3.13
906	3245	4.085733	AGTATATAGACAGAGGCAGCCTG	58.914	47.826	22.26	9.25	31.76	4.85
952	3291	2.356382	ACATCGATCGTCTCCTTGACTC	59.644	50.000	15.94	0.00	43.25	3.36
957	3296	1.157585	TCGTCTCCTTGACTCGTGAG	58.842	55.000	0.00	0.00	43.25	3.51
958	3297	0.875728	CGTCTCCTTGACTCGTGAGT	59.124	55.000	1.35	1.35	45.84	3.41
1176	3516	4.410400	GGGTCGTGGGCCAAGGAG	62.410	72.222	19.49	6.43	0.00	3.69
1191	3531	1.122019	AGGAGTTCACCAACCTCGCT	61.122	55.000	0.00	0.00	32.22	4.93
1328	4046	0.895559	GACAACTTCCCCAAGGGCAG	60.896	60.000	0.00	0.00	43.94	4.85
1654	4372	2.774951	CTAGCCAACGCGTTCGACG	61.775	63.158	23.92	10.98	45.88	5.12
1908	4635	0.603569	ACATCGTCGTCAGCTTCCTT	59.396	50.000	0.00	0.00	0.00	3.36
1986	5188	3.591254	GAACCCTGAAGTCGCGGCT	62.591	63.158	7.80	7.80	0.00	5.52
2028	5248	2.017559	GCGAGAAGCCGTCCACCTAT	62.018	60.000	0.00	0.00	40.81	2.57
2049	5269	0.474614	AGCATCTGATGAGCCTGCAT	59.525	50.000	21.30	0.00	32.73	3.96
2061	5281	0.817634	GCCTGCATTATACCCACGCA	60.818	55.000	0.00	0.00	0.00	5.24
2400	5620	2.355481	AAGGCGTTCGACGTGGAC	60.355	61.111	0.00	0.00	44.73	4.02
2504	5724	2.240500	GGATCAAGCGCGCTTCGAT	61.241	57.895	41.23	38.20	41.67	3.59
2506	5726	3.160557	ATCAAGCGCGCTTCGATGC	62.161	57.895	41.23	13.01	41.67	3.91
2507	5727	4.151297	CAAGCGCGCTTCGATGCA	62.151	61.111	41.23	0.00	41.67	3.96
2508	5728	3.857854	AAGCGCGCTTCGATGCAG	61.858	61.111	38.88	15.50	41.67	4.41
2509	5729	4.801624	AGCGCGCTTCGATGCAGA	62.802	61.111	31.32	0.00	41.67	4.26
2510	5730	4.565704	GCGCGCTTCGATGCAGAC	62.566	66.667	26.67	10.21	41.67	3.51
2511	5731	3.918220	CGCGCTTCGATGCAGACC	61.918	66.667	21.52	7.03	41.67	3.85
2512	5732	3.918220	GCGCTTCGATGCAGACCG	61.918	66.667	21.52	7.32	0.00	4.79
2513	5733	3.918220	CGCTTCGATGCAGACCGC	61.918	66.667	21.52	0.00	42.89	5.68
2845	6068	1.478510	CTCTGAGCGCCTAAGAGGAAA	59.521	52.381	18.94	0.00	35.86	3.13
2951	6174	0.687354	AATCAACAGAGGACAGCGGT	59.313	50.000	0.00	0.00	0.00	5.68
3080	6303	2.125106	GCTTTCGCCCGGAGACAT	60.125	61.111	0.73	0.00	0.00	3.06
3168	6391	4.720902	CCACAGGTGCCATCGCCA	62.721	66.667	0.00	0.00	45.27	5.69
3246	6472	0.625849	CCTGGAAATGGGCTACACCT	59.374	55.000	0.00	0.00	39.10	4.00
3264	6490	0.597568	CTTCCAATTTGCCTCGCACA	59.402	50.000	0.00	0.00	38.71	4.57
3318	6544	4.131088	GCTGAGGACCGACGACCC	62.131	72.222	0.00	0.00	0.00	4.46
3519	6747	3.000819	CCCCGCCACTCACCTGTA	61.001	66.667	0.00	0.00	0.00	2.74
3520	6748	2.589157	CCCCGCCACTCACCTGTAA	61.589	63.158	0.00	0.00	0.00	2.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	1.621301	ATCGTCTCGTTCGTCGTCGT	61.621	55.000	1.33	0.00	40.80	4.34
2	3	1.058438	ATCGTCTCGTTCGTCGTCG	59.942	57.895	0.00	0.00	40.80	5.12
3	4	0.179230	ACATCGTCTCGTTCGTCGTC	60.179	55.000	0.00	0.00	40.80	4.20
4	5	0.452287	CACATCGTCTCGTTCGTCGT	60.452	55.000	0.00	0.00	40.80	4.34
6	7	1.525596	CTCACATCGTCTCGTTCGTC	58.474	55.000	0.00	0.00	0.00	4.20
7	8	0.168348	CCTCACATCGTCTCGTTCGT	59.832	55.000	0.00	0.00	0.00	3.85
8	9	0.168348	ACCTCACATCGTCTCGTTCG	59.832	55.000	0.00	0.00	0.00	3.95
9	10	1.618861	CACCTCACATCGTCTCGTTC	58.381	55.000	0.00	0.00	0.00	3.95
33	34	2.036256	CCCCAACCAAGGCCAGAG	59.964	66.667	5.01	0.00	0.00	3.35
34	35	2.780924	ACCCCAACCAAGGCCAGA	60.781	61.111	5.01	0.00	0.00	3.86
264	640	3.375782	ACCAGTGCTTCAAAATGCTTC	57.624	42.857	0.00	0.00	0.00	3.86
435	816	2.854777	CGAAAGTACCATTCTGAGCTCG	59.145	50.000	9.64	4.19	0.00	5.03
436	817	3.860536	GTCGAAAGTACCATTCTGAGCTC	59.139	47.826	6.82	6.82	0.00	4.09
446	827	2.296752	TCGGACATTGTCGAAAGTACCA	59.703	45.455	10.56	0.00	32.65	3.25
482	863	6.992664	AGTAGATTAGCAGTTGATCTCCAT	57.007	37.500	0.00	0.00	32.68	3.41
533	2433	6.040842	GGTGAAATTATACGTCTACTACCCCA	59.959	42.308	0.00	0.00	0.00	4.96
669	2651	7.524294	TCAACAAAGATCAACAAAGCTTTTC	57.476	32.000	9.53	4.24	0.00	2.29
682	2664	5.454554	CGTGCATGAATGATCAACAAAGATC	59.545	40.000	0.00	0.00	43.69	2.75
683	2665	5.337554	CGTGCATGAATGATCAACAAAGAT	58.662	37.500	0.00	0.00	39.49	2.40
684	2666	4.725359	CGTGCATGAATGATCAACAAAGA	58.275	39.130	0.00	0.00	39.49	2.52
706	2688	2.896801	CGGAGTGTTGTGCCTGTGC	61.897	63.158	0.00	0.00	38.26	4.57
762	3047	0.032952	GTTGGGCCCGTTCCTTTTTC	59.967	55.000	19.37	0.00	0.00	2.29
790	3076	3.420300	TGCTTTGAACATACCGGGTAA	57.580	42.857	11.57	0.00	0.00	2.85
791	3077	3.637911	ATGCTTTGAACATACCGGGTA	57.362	42.857	9.76	9.76	0.00	3.69
836	3161	3.846430	GGGCGTACGGGGGAAGAG	61.846	72.222	18.39	0.00	0.00	2.85
906	3245	1.003233	GGTGTGGGGAGAGTCAAGC	60.003	63.158	0.00	0.00	0.00	4.01
957	3296	0.721811	CACGAGTCACGAGTCACGAC	60.722	60.000	4.19	1.50	45.77	4.34
958	3297	0.877213	TCACGAGTCACGAGTCACGA	60.877	55.000	4.19	0.00	45.77	4.35
959	3298	0.451299	CTCACGAGTCACGAGTCACG	60.451	60.000	0.00	0.00	45.77	4.35
960	3299	0.726452	GCTCACGAGTCACGAGTCAC	60.726	60.000	7.44	0.00	45.77	3.67
1039	3379	2.430704	CTGAAGAAGGCCAGCCCCAA	62.431	60.000	5.01	0.00	36.58	4.12
1176	3516	0.249911	AGTCAGCGAGGTTGGTGAAC	60.250	55.000	0.61	0.00	46.76	3.18
1191	3531	3.299977	AGGTGCGCGTACCAGTCA	61.300	61.111	40.96	12.68	43.37	3.41
1365	4083	1.006825	CGTCGACGTTGAAGATGCCA	61.007	55.000	29.08	0.00	34.11	4.92
1530	4248	2.114625	ACGTCCTGGAGGTCGACA	59.885	61.111	18.91	0.00	46.88	4.35
2013	5215	0.530870	GCTCATAGGTGGACGGCTTC	60.531	60.000	0.00	0.00	0.00	3.86
2028	5248	0.179054	GCAGGCTCATCAGATGCTCA	60.179	55.000	5.41	0.00	33.28	4.26
2049	5269	0.611200	ACAGCACTGCGTGGGTATAA	59.389	50.000	10.02	0.00	33.64	0.98
2217	5437	0.810016	GGAACTTCTCGTAGTCGGCT	59.190	55.000	0.00	0.00	37.69	5.52
2279	5499	2.369532	GGGTACTTGTACAGGTTCACCA	59.630	50.000	23.86	3.46	38.89	4.17
2282	5502	1.619827	CCGGGTACTTGTACAGGTTCA	59.380	52.381	16.45	0.00	0.00	3.18
2400	5620	2.178521	CCGTTCTCTCCGACCACG	59.821	66.667	0.00	0.00	39.43	4.94
2506	5726	3.368236	GCTAAAAACTACTCTGCGGTCTG	59.632	47.826	0.00	0.00	0.00	3.51
2507	5727	3.586892	GCTAAAAACTACTCTGCGGTCT	58.413	45.455	0.00	0.00	0.00	3.85
2508	5728	2.344741	CGCTAAAAACTACTCTGCGGTC	59.655	50.000	0.00	0.00	38.54	4.79
2509	5729	2.288640	ACGCTAAAAACTACTCTGCGGT	60.289	45.455	9.16	0.00	45.07	5.68
2510	5730	2.092211	CACGCTAAAAACTACTCTGCGG	59.908	50.000	9.16	0.00	45.07	5.69
2511	5731	2.472397	GCACGCTAAAAACTACTCTGCG	60.472	50.000	0.00	0.00	46.02	5.18
2512	5732	2.472397	CGCACGCTAAAAACTACTCTGC	60.472	50.000	0.00	0.00	0.00	4.26
2513	5733	2.729882	ACGCACGCTAAAAACTACTCTG	59.270	45.455	0.00	0.00	0.00	3.35
2514	5734	2.729882	CACGCACGCTAAAAACTACTCT	59.270	45.455	0.00	0.00	0.00	3.24
2578	5798	7.309621	CCTTCTATAAAGCTATGGTACGCCTAA	60.310	40.741	0.00	0.00	35.27	2.69
2845	6068	2.361610	CCGCCTTCCACTTGCCAT	60.362	61.111	0.00	0.00	0.00	4.40
2951	6174	0.756294	TTGCTCTCCTTCGGTGTTCA	59.244	50.000	0.00	0.00	0.00	3.18
2975	6198	1.125093	TGTGGAGACATGGTCGGGTT	61.125	55.000	0.00	0.00	46.14	4.11
3035	6258	3.186909	TCGATGTTGGATCGACACATTC	58.813	45.455	2.72	0.00	44.42	2.67
3080	6303	0.108585	GCTCACTTGGAGTTGGTGGA	59.891	55.000	0.00	0.00	45.88	4.02
3206	6429	1.440353	GCGTGGTGATGTGCGTTTC	60.440	57.895	0.00	0.00	0.00	2.78
3246	6472	0.597568	CTGTGCGAGGCAAATTGGAA	59.402	50.000	0.00	0.00	41.47	3.53
3318	6544	1.135859	GTTCTTCTTGGTCATGCAGCG	60.136	52.381	0.00	0.00	0.00	5.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.