Multiple sequence alignment - TraesCS2A01G533400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G533400 chr2A 100.000 6328 0 0 1 6328 749384143 749390470 0.000000e+00 11686.0
1 TraesCS2A01G533400 chr2A 85.519 1319 160 21 1016 2317 721729571 721728267 0.000000e+00 1349.0
2 TraesCS2A01G533400 chr2A 85.973 1269 139 26 1064 2317 748910457 748909213 0.000000e+00 1321.0
3 TraesCS2A01G533400 chr2A 84.281 299 46 1 3957 4254 748908253 748907955 2.230000e-74 291.0
4 TraesCS2A01G533400 chr2A 82.736 307 49 4 3957 4259 748870434 748870128 2.910000e-68 270.0
5 TraesCS2A01G533400 chr2A 80.106 377 63 9 3468 3841 748908726 748908359 2.910000e-68 270.0
6 TraesCS2A01G533400 chr2A 96.503 143 3 2 1 141 69903441 69903583 1.060000e-57 235.0
7 TraesCS2A01G533400 chr2A 79.348 276 56 1 4356 4631 721725898 721725624 6.470000e-45 193.0
8 TraesCS2A01G533400 chr2B 91.891 2232 122 25 136 2349 755151644 755149454 0.000000e+00 3064.0
9 TraesCS2A01G533400 chr2B 88.876 2499 161 45 3043 5502 755149338 755146918 0.000000e+00 2966.0
10 TraesCS2A01G533400 chr2B 88.342 1158 113 11 4359 5502 755032296 755033445 0.000000e+00 1371.0
11 TraesCS2A01G533400 chr2B 85.596 1326 155 15 1016 2317 708716298 708714985 0.000000e+00 1358.0
12 TraesCS2A01G533400 chr2B 86.076 1264 137 23 1069 2317 754654570 754653331 0.000000e+00 1323.0
13 TraesCS2A01G533400 chr2B 91.589 749 61 2 5581 6328 5816423 5815676 0.000000e+00 1033.0
14 TraesCS2A01G533400 chr2B 92.977 598 35 3 1732 2329 755009816 755010406 0.000000e+00 865.0
15 TraesCS2A01G533400 chr2B 91.848 552 31 5 3609 4155 755010403 755010945 0.000000e+00 758.0
16 TraesCS2A01G533400 chr2B 92.172 511 39 1 5581 6091 400777620 400777111 0.000000e+00 721.0
17 TraesCS2A01G533400 chr2B 82.523 761 117 14 5573 6328 734403418 734404167 0.000000e+00 654.0
18 TraesCS2A01G533400 chr2B 82.770 296 50 1 3949 4243 754652408 754652113 4.870000e-66 263.0
19 TraesCS2A01G533400 chr2B 79.636 275 53 2 4357 4631 708710796 708710525 1.800000e-45 195.0
20 TraesCS2A01G533400 chr2B 93.750 96 6 0 4142 4237 755013479 755013574 1.840000e-30 145.0
21 TraesCS2A01G533400 chr2B 92.157 51 4 0 5576 5626 579923805 579923855 8.800000e-09 73.1
22 TraesCS2A01G533400 chr2D 95.647 1608 47 6 3915 5502 618336455 618338059 0.000000e+00 2560.0
23 TraesCS2A01G533400 chr2D 95.315 1494 64 5 889 2380 618333309 618334798 0.000000e+00 2366.0
24 TraesCS2A01G533400 chr2D 86.505 1319 147 21 1016 2317 586961677 586960373 0.000000e+00 1421.0
25 TraesCS2A01G533400 chr2D 85.616 1314 142 21 1016 2316 618143173 618141894 0.000000e+00 1336.0
26 TraesCS2A01G533400 chr2D 80.540 1259 198 35 1084 2315 618660280 618659042 0.000000e+00 924.0
27 TraesCS2A01G533400 chr2D 93.005 629 27 7 3215 3838 618335840 618336456 0.000000e+00 902.0
28 TraesCS2A01G533400 chr2D 88.052 770 73 9 135 897 618332373 618333130 0.000000e+00 894.0
29 TraesCS2A01G533400 chr2D 91.969 635 44 4 2379 3007 616501771 616501138 0.000000e+00 883.0
30 TraesCS2A01G533400 chr2D 85.185 270 37 2 2051 2317 618876992 618877261 2.250000e-69 274.0
31 TraesCS2A01G533400 chr2D 80.505 277 53 1 4355 4631 586958027 586957752 1.790000e-50 211.0
32 TraesCS2A01G533400 chr3B 96.021 754 25 3 5580 6328 789149505 789148752 0.000000e+00 1221.0
33 TraesCS2A01G533400 chr3B 80.736 462 70 13 5859 6313 561506423 561506872 6.070000e-90 342.0
34 TraesCS2A01G533400 chr3B 77.914 163 24 8 150 311 417749801 417749952 2.430000e-14 91.6
35 TraesCS2A01G533400 chr4B 93.553 636 34 5 2378 3007 497549917 497549283 0.000000e+00 941.0
36 TraesCS2A01G533400 chr1D 93.482 629 33 4 2387 3007 336562335 336562963 0.000000e+00 928.0
37 TraesCS2A01G533400 chr6A 92.540 630 44 3 2380 3007 579974525 579973897 0.000000e+00 900.0
38 TraesCS2A01G533400 chr4A 89.583 576 53 4 2378 2946 201707789 201708364 0.000000e+00 725.0
39 TraesCS2A01G533400 chr4A 88.462 52 6 0 5575 5626 636071307 636071358 5.300000e-06 63.9
40 TraesCS2A01G533400 chr3D 83.995 756 110 10 5580 6328 85070432 85071183 0.000000e+00 715.0
41 TraesCS2A01G533400 chr6B 86.223 646 80 7 5580 6221 133388797 133388157 0.000000e+00 691.0
42 TraesCS2A01G533400 chr6B 88.462 104 11 1 6226 6328 133370712 133370609 2.400000e-24 124.0
43 TraesCS2A01G533400 chr5B 82.817 774 113 17 5562 6328 696644923 696644163 0.000000e+00 675.0
44 TraesCS2A01G533400 chr5B 92.857 42 1 1 2372 2411 15181822 15181781 6.850000e-05 60.2
45 TraesCS2A01G533400 chrUn 92.379 433 26 4 2577 3007 183130882 183130455 1.510000e-170 610.0
46 TraesCS2A01G533400 chrUn 92.379 433 26 4 2577 3007 183183418 183182991 1.510000e-170 610.0
47 TraesCS2A01G533400 chrUn 92.166 434 26 4 2577 3007 254881181 254880753 1.950000e-169 606.0
48 TraesCS2A01G533400 chrUn 87.736 530 49 10 2381 2902 16526477 16525956 7.020000e-169 604.0
49 TraesCS2A01G533400 chrUn 93.000 200 12 2 2380 2578 183131204 183131006 2.230000e-74 291.0
50 TraesCS2A01G533400 chrUn 93.000 200 12 2 2380 2578 183183740 183183542 2.230000e-74 291.0
51 TraesCS2A01G533400 chrUn 93.000 200 12 2 2380 2578 254881503 254881305 2.230000e-74 291.0
52 TraesCS2A01G533400 chrUn 100.000 131 0 0 1 131 81556826 81556956 6.340000e-60 243.0
53 TraesCS2A01G533400 chr1A 100.000 133 0 0 1 133 558973019 558973151 4.900000e-61 246.0
54 TraesCS2A01G533400 chr1A 100.000 131 0 0 1 131 495772865 495772735 6.340000e-60 243.0
55 TraesCS2A01G533400 chr1A 97.183 142 4 0 1 142 63836116 63835975 2.280000e-59 241.0
56 TraesCS2A01G533400 chr1A 97.163 141 4 0 1 141 518936724 518936584 8.200000e-59 239.0
57 TraesCS2A01G533400 chr1A 98.182 55 1 0 5501 5555 309399165 309399111 5.220000e-16 97.1
58 TraesCS2A01G533400 chr5A 100.000 132 0 0 1 132 352477906 352478037 1.760000e-60 244.0
59 TraesCS2A01G533400 chr5A 97.122 139 4 0 1 139 30795302 30795440 1.060000e-57 235.0
60 TraesCS2A01G533400 chr7A 100.000 131 0 0 1 131 114015697 114015827 6.340000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G533400 chr2A 749384143 749390470 6327 False 11686.000000 11686 100.000000 1 6328 1 chr2A.!!$F2 6327
1 TraesCS2A01G533400 chr2A 721725624 721729571 3947 True 771.000000 1349 82.433500 1016 4631 2 chr2A.!!$R2 3615
2 TraesCS2A01G533400 chr2A 748907955 748910457 2502 True 627.333333 1321 83.453333 1064 4254 3 chr2A.!!$R3 3190
3 TraesCS2A01G533400 chr2B 755146918 755151644 4726 True 3015.000000 3064 90.383500 136 5502 2 chr2B.!!$R6 5366
4 TraesCS2A01G533400 chr2B 755032296 755033445 1149 False 1371.000000 1371 88.342000 4359 5502 1 chr2B.!!$F3 1143
5 TraesCS2A01G533400 chr2B 708714985 708716298 1313 True 1358.000000 1358 85.596000 1016 2317 1 chr2B.!!$R4 1301
6 TraesCS2A01G533400 chr2B 5815676 5816423 747 True 1033.000000 1033 91.589000 5581 6328 1 chr2B.!!$R1 747
7 TraesCS2A01G533400 chr2B 754652113 754654570 2457 True 793.000000 1323 84.423000 1069 4243 2 chr2B.!!$R5 3174
8 TraesCS2A01G533400 chr2B 400777111 400777620 509 True 721.000000 721 92.172000 5581 6091 1 chr2B.!!$R2 510
9 TraesCS2A01G533400 chr2B 734403418 734404167 749 False 654.000000 654 82.523000 5573 6328 1 chr2B.!!$F2 755
10 TraesCS2A01G533400 chr2B 755009816 755013574 3758 False 589.333333 865 92.858333 1732 4237 3 chr2B.!!$F4 2505
11 TraesCS2A01G533400 chr2D 618332373 618338059 5686 False 1680.500000 2560 93.004750 135 5502 4 chr2D.!!$F2 5367
12 TraesCS2A01G533400 chr2D 618141894 618143173 1279 True 1336.000000 1336 85.616000 1016 2316 1 chr2D.!!$R2 1300
13 TraesCS2A01G533400 chr2D 618659042 618660280 1238 True 924.000000 924 80.540000 1084 2315 1 chr2D.!!$R3 1231
14 TraesCS2A01G533400 chr2D 616501138 616501771 633 True 883.000000 883 91.969000 2379 3007 1 chr2D.!!$R1 628
15 TraesCS2A01G533400 chr2D 586957752 586961677 3925 True 816.000000 1421 83.505000 1016 4631 2 chr2D.!!$R4 3615
16 TraesCS2A01G533400 chr3B 789148752 789149505 753 True 1221.000000 1221 96.021000 5580 6328 1 chr3B.!!$R1 748
17 TraesCS2A01G533400 chr4B 497549283 497549917 634 True 941.000000 941 93.553000 2378 3007 1 chr4B.!!$R1 629
18 TraesCS2A01G533400 chr1D 336562335 336562963 628 False 928.000000 928 93.482000 2387 3007 1 chr1D.!!$F1 620
19 TraesCS2A01G533400 chr6A 579973897 579974525 628 True 900.000000 900 92.540000 2380 3007 1 chr6A.!!$R1 627
20 TraesCS2A01G533400 chr4A 201707789 201708364 575 False 725.000000 725 89.583000 2378 2946 1 chr4A.!!$F1 568
21 TraesCS2A01G533400 chr3D 85070432 85071183 751 False 715.000000 715 83.995000 5580 6328 1 chr3D.!!$F1 748
22 TraesCS2A01G533400 chr6B 133388157 133388797 640 True 691.000000 691 86.223000 5580 6221 1 chr6B.!!$R2 641
23 TraesCS2A01G533400 chr5B 696644163 696644923 760 True 675.000000 675 82.817000 5562 6328 1 chr5B.!!$R2 766
24 TraesCS2A01G533400 chrUn 16525956 16526477 521 True 604.000000 604 87.736000 2381 2902 1 chrUn.!!$R1 521
25 TraesCS2A01G533400 chrUn 183130455 183131204 749 True 450.500000 610 92.689500 2380 3007 2 chrUn.!!$R2 627
26 TraesCS2A01G533400 chrUn 183182991 183183740 749 True 450.500000 610 92.689500 2380 3007 2 chrUn.!!$R3 627
27 TraesCS2A01G533400 chrUn 254880753 254881503 750 True 448.500000 606 92.583000 2380 3007 2 chrUn.!!$R4 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 0.036671 TCTCTGCTGCTGTGGTCATG 60.037 55.000 0.00 0.0 0.00 3.07 F
74 75 0.036671 CTCTGCTGCTGTGGTCATGA 60.037 55.000 0.00 0.0 0.00 3.07 F
381 383 0.174617 CTCCTTCTCTTCCTCCGCAC 59.825 60.000 0.00 0.0 0.00 5.34 F
591 599 0.248907 GCGGATGCTTACAGCTACGA 60.249 55.000 10.10 0.0 42.97 3.43 F
602 610 0.817654 CAGCTACGACTGGATGACCA 59.182 55.000 0.00 0.0 44.76 4.02 F
1470 1684 0.968901 ATCCGTCGGACACCTTGCTA 60.969 55.000 18.08 0.0 32.98 3.49 F
1960 2197 1.293498 GTCGAGGGCTTCAGCTTCA 59.707 57.895 0.00 0.0 41.70 3.02 F
3365 4825 1.375908 GCTCACTCGGATGCCACAA 60.376 57.895 0.00 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 1684 1.001641 GCCCAGCTTCATGTCAGGT 60.002 57.895 0.00 0.00 0.00 4.00 R
2014 2278 2.736236 CAGCGCTGCGTGTCTTCT 60.736 61.111 26.68 7.86 0.00 2.85 R
2513 2941 3.257375 TCACAGCATTACGAGGTGTAACT 59.743 43.478 0.00 0.00 45.43 2.24 R
2549 2977 2.408271 ATGGATGCACGATCAACAGT 57.592 45.000 0.00 0.00 31.91 3.55 R
2709 3269 3.421844 TGCGAATGAGATAGCTAGGCTA 58.578 45.455 0.00 1.64 45.55 3.93 R
3146 4080 2.492088 TCAGACTTCCGGATGTGTACAG 59.508 50.000 26.24 11.48 0.00 2.74 R
3788 5880 3.144506 CTGGCCGATCATATTGCTTTCT 58.855 45.455 0.00 0.00 0.00 2.52 R
5397 10800 1.161843 CGCGTACCCAAAAAGACCAT 58.838 50.000 0.00 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.960938 GTGCCCTAGATGTGATATGTTCA 58.039 43.478 0.00 0.00 0.00 3.18
23 24 5.555017 GTGCCCTAGATGTGATATGTTCAT 58.445 41.667 0.00 0.00 36.54 2.57
24 25 5.641209 GTGCCCTAGATGTGATATGTTCATC 59.359 44.000 0.00 0.00 36.54 2.92
25 26 5.545335 TGCCCTAGATGTGATATGTTCATCT 59.455 40.000 14.24 14.24 46.33 2.90
26 27 5.873712 GCCCTAGATGTGATATGTTCATCTG 59.126 44.000 17.11 10.70 44.95 2.90
27 28 5.873712 CCCTAGATGTGATATGTTCATCTGC 59.126 44.000 17.11 0.00 44.95 4.26
28 29 6.295745 CCCTAGATGTGATATGTTCATCTGCT 60.296 42.308 17.11 0.00 44.95 4.24
29 30 7.093596 CCCTAGATGTGATATGTTCATCTGCTA 60.094 40.741 17.11 4.46 44.95 3.49
30 31 8.476447 CCTAGATGTGATATGTTCATCTGCTAT 58.524 37.037 17.11 2.25 44.95 2.97
31 32 9.303537 CTAGATGTGATATGTTCATCTGCTATG 57.696 37.037 17.11 0.00 44.95 2.23
32 33 6.594547 AGATGTGATATGTTCATCTGCTATGC 59.405 38.462 10.93 0.00 44.08 3.14
33 34 5.861727 TGTGATATGTTCATCTGCTATGCT 58.138 37.500 0.00 0.00 36.54 3.79
34 35 6.996509 TGTGATATGTTCATCTGCTATGCTA 58.003 36.000 0.00 0.00 36.54 3.49
35 36 7.095270 TGTGATATGTTCATCTGCTATGCTAG 58.905 38.462 0.00 0.00 36.54 3.42
36 37 7.095910 GTGATATGTTCATCTGCTATGCTAGT 58.904 38.462 0.00 0.00 36.54 2.57
37 38 7.601886 GTGATATGTTCATCTGCTATGCTAGTT 59.398 37.037 0.00 0.00 36.54 2.24
38 39 7.816513 TGATATGTTCATCTGCTATGCTAGTTC 59.183 37.037 0.00 0.00 0.00 3.01
39 40 4.363138 TGTTCATCTGCTATGCTAGTTCG 58.637 43.478 0.00 0.00 0.00 3.95
40 41 3.018598 TCATCTGCTATGCTAGTTCGC 57.981 47.619 0.00 0.00 0.00 4.70
41 42 2.362077 TCATCTGCTATGCTAGTTCGCA 59.638 45.455 0.00 0.00 45.10 5.10
54 55 7.786178 TGCTAGTTCGCATGATTAGTTTAAT 57.214 32.000 0.00 0.00 34.44 1.40
55 56 7.851508 TGCTAGTTCGCATGATTAGTTTAATC 58.148 34.615 0.00 2.61 38.95 1.75
56 57 7.710907 TGCTAGTTCGCATGATTAGTTTAATCT 59.289 33.333 0.00 0.00 39.09 2.40
57 58 8.217778 GCTAGTTCGCATGATTAGTTTAATCTC 58.782 37.037 0.00 0.79 43.79 2.75
58 59 9.469807 CTAGTTCGCATGATTAGTTTAATCTCT 57.530 33.333 0.00 0.00 43.79 3.10
59 60 8.136057 AGTTCGCATGATTAGTTTAATCTCTG 57.864 34.615 0.00 8.20 43.79 3.35
60 61 6.530913 TCGCATGATTAGTTTAATCTCTGC 57.469 37.500 17.42 17.42 43.79 4.26
61 62 6.283694 TCGCATGATTAGTTTAATCTCTGCT 58.716 36.000 20.98 0.00 43.84 4.24
62 63 6.201615 TCGCATGATTAGTTTAATCTCTGCTG 59.798 38.462 20.98 17.20 43.84 4.41
63 64 6.141462 GCATGATTAGTTTAATCTCTGCTGC 58.859 40.000 18.75 0.00 43.34 5.25
64 65 6.017275 GCATGATTAGTTTAATCTCTGCTGCT 60.017 38.462 18.75 0.00 43.34 4.24
65 66 6.915544 TGATTAGTTTAATCTCTGCTGCTG 57.084 37.500 0.00 0.00 43.79 4.41
66 67 6.409704 TGATTAGTTTAATCTCTGCTGCTGT 58.590 36.000 0.00 0.00 43.79 4.40
67 68 6.314648 TGATTAGTTTAATCTCTGCTGCTGTG 59.685 38.462 0.00 1.40 43.79 3.66
68 69 3.341823 AGTTTAATCTCTGCTGCTGTGG 58.658 45.455 0.00 0.00 0.00 4.17
69 70 3.077359 GTTTAATCTCTGCTGCTGTGGT 58.923 45.455 0.00 0.00 0.00 4.16
70 71 2.680312 TAATCTCTGCTGCTGTGGTC 57.320 50.000 0.00 0.00 0.00 4.02
71 72 0.689055 AATCTCTGCTGCTGTGGTCA 59.311 50.000 0.00 0.00 0.00 4.02
72 73 0.910338 ATCTCTGCTGCTGTGGTCAT 59.090 50.000 0.00 0.00 0.00 3.06
73 74 0.036671 TCTCTGCTGCTGTGGTCATG 60.037 55.000 0.00 0.00 0.00 3.07
74 75 0.036671 CTCTGCTGCTGTGGTCATGA 60.037 55.000 0.00 0.00 0.00 3.07
75 76 0.616891 TCTGCTGCTGTGGTCATGAT 59.383 50.000 0.00 0.00 0.00 2.45
76 77 1.003928 TCTGCTGCTGTGGTCATGATT 59.996 47.619 0.00 0.00 0.00 2.57
77 78 1.816835 CTGCTGCTGTGGTCATGATTT 59.183 47.619 0.00 0.00 0.00 2.17
78 79 3.011818 CTGCTGCTGTGGTCATGATTTA 58.988 45.455 0.00 0.00 0.00 1.40
79 80 3.623703 TGCTGCTGTGGTCATGATTTAT 58.376 40.909 0.00 0.00 0.00 1.40
80 81 3.628942 TGCTGCTGTGGTCATGATTTATC 59.371 43.478 0.00 0.00 0.00 1.75
81 82 3.881688 GCTGCTGTGGTCATGATTTATCT 59.118 43.478 0.00 0.00 0.00 1.98
82 83 4.337555 GCTGCTGTGGTCATGATTTATCTT 59.662 41.667 0.00 0.00 0.00 2.40
83 84 5.505324 GCTGCTGTGGTCATGATTTATCTTC 60.505 44.000 0.00 0.00 0.00 2.87
84 85 5.748402 TGCTGTGGTCATGATTTATCTTCT 58.252 37.500 0.00 0.00 0.00 2.85
85 86 5.587443 TGCTGTGGTCATGATTTATCTTCTG 59.413 40.000 0.00 0.00 0.00 3.02
86 87 5.587844 GCTGTGGTCATGATTTATCTTCTGT 59.412 40.000 0.00 0.00 0.00 3.41
87 88 6.094603 GCTGTGGTCATGATTTATCTTCTGTT 59.905 38.462 0.00 0.00 0.00 3.16
88 89 7.362401 GCTGTGGTCATGATTTATCTTCTGTTT 60.362 37.037 0.00 0.00 0.00 2.83
89 90 9.166173 CTGTGGTCATGATTTATCTTCTGTTTA 57.834 33.333 0.00 0.00 0.00 2.01
90 91 9.685276 TGTGGTCATGATTTATCTTCTGTTTAT 57.315 29.630 0.00 0.00 0.00 1.40
93 94 9.869844 GGTCATGATTTATCTTCTGTTTATTCG 57.130 33.333 0.00 0.00 0.00 3.34
94 95 9.869844 GTCATGATTTATCTTCTGTTTATTCGG 57.130 33.333 0.00 0.00 0.00 4.30
95 96 9.830975 TCATGATTTATCTTCTGTTTATTCGGA 57.169 29.630 0.00 0.00 0.00 4.55
105 106 9.031360 TCTTCTGTTTATTCGGATTAAATCTCG 57.969 33.333 7.97 0.00 0.00 4.04
106 107 8.712285 TTCTGTTTATTCGGATTAAATCTCGT 57.288 30.769 7.97 0.00 0.00 4.18
107 108 9.806203 TTCTGTTTATTCGGATTAAATCTCGTA 57.194 29.630 7.97 0.00 0.00 3.43
108 109 9.459640 TCTGTTTATTCGGATTAAATCTCGTAG 57.540 33.333 7.97 2.99 0.00 3.51
109 110 9.245962 CTGTTTATTCGGATTAAATCTCGTAGT 57.754 33.333 7.97 0.00 0.00 2.73
116 117 8.068893 TCGGATTAAATCTCGTAGTAATTTGC 57.931 34.615 0.00 0.00 0.00 3.68
117 118 7.924412 TCGGATTAAATCTCGTAGTAATTTGCT 59.076 33.333 0.00 0.00 0.00 3.91
118 119 8.215132 CGGATTAAATCTCGTAGTAATTTGCTC 58.785 37.037 0.00 0.00 0.00 4.26
119 120 9.042008 GGATTAAATCTCGTAGTAATTTGCTCA 57.958 33.333 0.00 0.00 0.00 4.26
126 127 8.589335 TCTCGTAGTAATTTGCTCATATTTCC 57.411 34.615 0.00 0.00 0.00 3.13
127 128 8.201464 TCTCGTAGTAATTTGCTCATATTTCCA 58.799 33.333 0.00 0.00 0.00 3.53
128 129 8.725405 TCGTAGTAATTTGCTCATATTTCCAA 57.275 30.769 0.00 0.00 0.00 3.53
129 130 8.609176 TCGTAGTAATTTGCTCATATTTCCAAC 58.391 33.333 0.00 0.00 0.00 3.77
130 131 8.394877 CGTAGTAATTTGCTCATATTTCCAACA 58.605 33.333 0.00 0.00 0.00 3.33
131 132 9.503427 GTAGTAATTTGCTCATATTTCCAACAC 57.497 33.333 0.00 0.00 0.00 3.32
132 133 8.121305 AGTAATTTGCTCATATTTCCAACACA 57.879 30.769 0.00 0.00 0.00 3.72
133 134 8.584157 AGTAATTTGCTCATATTTCCAACACAA 58.416 29.630 0.00 0.00 0.00 3.33
154 155 4.706842 AACAACAACCATGTAGGACTCT 57.293 40.909 0.00 0.00 39.40 3.24
160 161 1.819288 ACCATGTAGGACTCTGACACG 59.181 52.381 0.00 0.00 41.22 4.49
161 162 1.819288 CCATGTAGGACTCTGACACGT 59.181 52.381 0.00 0.00 41.22 4.49
181 182 2.122592 GCCCACCCAAAACCCCTT 60.123 61.111 0.00 0.00 0.00 3.95
199 200 1.185618 TTCGGGACCTGGTGTCTCTG 61.186 60.000 2.82 0.00 42.77 3.35
205 206 2.104963 GGACCTGGTGTCTCTGTTCTTT 59.895 50.000 2.82 0.00 43.89 2.52
217 218 6.778069 TGTCTCTGTTCTTTCCTCTTTCTCTA 59.222 38.462 0.00 0.00 0.00 2.43
221 222 7.967908 TCTGTTCTTTCCTCTTTCTCTACATT 58.032 34.615 0.00 0.00 0.00 2.71
266 267 3.570212 ACCACCTTTCAGGCCGCT 61.570 61.111 0.00 0.00 39.63 5.52
267 268 2.747855 CCACCTTTCAGGCCGCTC 60.748 66.667 0.00 0.00 39.63 5.03
268 269 2.032528 CACCTTTCAGGCCGCTCA 59.967 61.111 0.00 0.00 39.63 4.26
269 270 2.037136 CACCTTTCAGGCCGCTCAG 61.037 63.158 0.00 0.00 39.63 3.35
270 271 2.437359 CCTTTCAGGCCGCTCAGG 60.437 66.667 0.00 0.00 44.97 3.86
291 292 2.525592 CCTGCCAAACCCTTCCCA 59.474 61.111 0.00 0.00 0.00 4.37
317 318 1.080025 GCGACCTCCACCACTACAC 60.080 63.158 0.00 0.00 0.00 2.90
320 321 0.834687 GACCTCCACCACTACACCCA 60.835 60.000 0.00 0.00 0.00 4.51
321 322 0.400815 ACCTCCACCACTACACCCAA 60.401 55.000 0.00 0.00 0.00 4.12
338 340 1.600916 AAGCTCCCACACCGCTTTC 60.601 57.895 0.00 0.00 40.82 2.62
345 347 1.597854 CACACCGCTTTCAGCTCCA 60.598 57.895 0.00 0.00 39.60 3.86
350 352 0.449388 CCGCTTTCAGCTCCATTGTC 59.551 55.000 0.00 0.00 39.60 3.18
367 369 1.155390 TCGGTCCACACCTCTCCTT 59.845 57.895 0.00 0.00 41.17 3.36
381 383 0.174617 CTCCTTCTCTTCCTCCGCAC 59.825 60.000 0.00 0.00 0.00 5.34
392 394 1.144057 CTCCGCACAGGTACCATCC 59.856 63.158 15.94 0.00 41.99 3.51
394 396 2.890474 CGCACAGGTACCATCCGC 60.890 66.667 15.94 9.95 0.00 5.54
396 398 3.031417 GCACAGGTACCATCCGCCT 62.031 63.158 15.94 0.00 0.00 5.52
397 399 1.144057 CACAGGTACCATCCGCCTC 59.856 63.158 15.94 0.00 0.00 4.70
409 411 2.677542 TCCGCCTCTATGGTACTCAT 57.322 50.000 0.00 0.00 39.78 2.90
436 438 3.550030 CCCGACAAGTGTTTGGTGAAATC 60.550 47.826 0.00 0.00 38.66 2.17
452 456 5.105675 GGTGAAATCCCCGTGCTAATTTTTA 60.106 40.000 0.00 0.00 0.00 1.52
517 524 8.830580 ACATATACAAGCACTACATTGATTCAC 58.169 33.333 0.00 0.00 0.00 3.18
524 531 4.000325 CACTACATTGATTCACCCGACAA 59.000 43.478 0.00 0.00 0.00 3.18
548 555 8.567948 CAAGGATTTGATATGCGGTTATTTAGT 58.432 33.333 0.00 0.00 36.36 2.24
584 592 2.489938 AAAAGAGGCGGATGCTTACA 57.510 45.000 0.00 0.00 42.25 2.41
591 599 0.248907 GCGGATGCTTACAGCTACGA 60.249 55.000 10.10 0.00 42.97 3.43
602 610 0.817654 CAGCTACGACTGGATGACCA 59.182 55.000 0.00 0.00 44.76 4.02
645 653 2.029666 GGTCCCCATCGATCTGCG 59.970 66.667 0.00 0.00 42.69 5.18
650 658 1.368950 CCCATCGATCTGCGGACAT 59.631 57.895 0.00 0.00 41.33 3.06
654 662 2.353109 CCATCGATCTGCGGACATATGT 60.353 50.000 8.43 8.43 41.33 2.29
656 664 1.953686 TCGATCTGCGGACATATGTGA 59.046 47.619 14.43 4.07 41.33 3.58
707 716 8.975410 TGCATCTACAATTGAAGAAAATCAAG 57.025 30.769 13.59 0.00 42.21 3.02
708 717 8.795513 TGCATCTACAATTGAAGAAAATCAAGA 58.204 29.630 13.59 0.00 42.21 3.02
747 756 6.071165 CCTGGAAATTTTTGGCTACTCTTGAT 60.071 38.462 0.00 0.00 0.00 2.57
807 816 4.880696 GGTTTGAGATGGGAAGATGAGAAG 59.119 45.833 0.00 0.00 0.00 2.85
1137 1338 2.255554 GACACGCTCGTCTCAGCA 59.744 61.111 0.00 0.00 39.62 4.41
1140 1341 3.753434 ACGCTCGTCTCAGCAGGG 61.753 66.667 0.00 0.00 39.62 4.45
1470 1684 0.968901 ATCCGTCGGACACCTTGCTA 60.969 55.000 18.08 0.00 32.98 3.49
1878 2107 2.768492 GGACCCGTGCGACGAGTAT 61.768 63.158 0.00 0.00 46.05 2.12
1960 2197 1.293498 GTCGAGGGCTTCAGCTTCA 59.707 57.895 0.00 0.00 41.70 3.02
2513 2941 3.072330 TCACAATGCAGAGGACCTGTTTA 59.928 43.478 0.00 0.00 44.71 2.01
2522 2950 4.283722 CAGAGGACCTGTTTAGTTACACCT 59.716 45.833 0.00 0.00 38.10 4.00
2534 2962 3.585862 AGTTACACCTCGTAATGCTGTG 58.414 45.455 0.00 0.00 42.02 3.66
2549 2977 8.600625 CGTAATGCTGTGAAATTTACTAGCTAA 58.399 33.333 16.28 3.45 32.66 3.09
2570 2998 3.872696 ACTGTTGATCGTGCATCCATTA 58.127 40.909 0.00 0.00 0.00 1.90
2709 3269 7.164230 GATCCTTTCTATGATCCACGTATCT 57.836 40.000 0.00 0.00 32.92 1.98
2831 3391 2.603173 CGTTTCTTTGGCTTGCTCTGTC 60.603 50.000 0.00 0.00 0.00 3.51
2835 3399 3.023119 TCTTTGGCTTGCTCTGTCAAAA 58.977 40.909 5.72 0.00 38.33 2.44
2951 3532 9.287373 CCAAACAGGTAGTAGTAAATAAAACCA 57.713 33.333 0.00 0.00 0.00 3.67
3009 3590 9.771534 ATACTTAGAGAATACTTTGCAATCCTC 57.228 33.333 0.00 1.45 0.00 3.71
3010 3591 7.624549 ACTTAGAGAATACTTTGCAATCCTCA 58.375 34.615 0.00 0.00 0.00 3.86
3011 3592 8.270744 ACTTAGAGAATACTTTGCAATCCTCAT 58.729 33.333 0.00 0.00 0.00 2.90
3012 3593 9.770097 CTTAGAGAATACTTTGCAATCCTCATA 57.230 33.333 0.00 0.00 0.00 2.15
3013 3594 9.770097 TTAGAGAATACTTTGCAATCCTCATAG 57.230 33.333 0.00 0.00 0.00 2.23
3014 3595 8.027524 AGAGAATACTTTGCAATCCTCATAGA 57.972 34.615 0.00 0.00 0.00 1.98
3016 3597 8.674263 AGAATACTTTGCAATCCTCATAGAAG 57.326 34.615 0.00 0.00 0.00 2.85
3017 3598 8.270744 AGAATACTTTGCAATCCTCATAGAAGT 58.729 33.333 0.00 0.00 0.00 3.01
3018 3599 9.547753 GAATACTTTGCAATCCTCATAGAAGTA 57.452 33.333 0.00 1.16 34.18 2.24
3024 3605 6.291377 TGCAATCCTCATAGAAGTATTGGAC 58.709 40.000 0.00 0.00 0.00 4.02
3026 3607 6.767902 GCAATCCTCATAGAAGTATTGGACAA 59.232 38.462 0.00 0.00 0.00 3.18
3027 3608 7.283127 GCAATCCTCATAGAAGTATTGGACAAA 59.717 37.037 0.00 0.00 0.00 2.83
3028 3609 8.616076 CAATCCTCATAGAAGTATTGGACAAAC 58.384 37.037 0.00 0.00 0.00 2.93
3030 3611 7.685481 TCCTCATAGAAGTATTGGACAAACAA 58.315 34.615 0.00 0.00 34.41 2.83
3031 3612 8.328758 TCCTCATAGAAGTATTGGACAAACAAT 58.671 33.333 0.00 0.00 43.13 2.71
3105 4039 6.986817 CCCACTCAACTGATCGACTTAATTAT 59.013 38.462 0.00 0.00 0.00 1.28
3133 4067 5.111989 ACTCATTCACGAATCACGATCATT 58.888 37.500 0.00 0.00 45.77 2.57
3139 4073 5.737353 TCACGAATCACGATCATTTATTGC 58.263 37.500 0.00 0.00 45.77 3.56
3144 4078 6.441093 AATCACGATCATTTATTGCAGTGT 57.559 33.333 0.00 0.00 0.00 3.55
3146 4080 6.344572 TCACGATCATTTATTGCAGTGTAC 57.655 37.500 0.00 0.00 0.00 2.90
3169 4623 4.274978 TGTACACATCCGGAAGTCTGATA 58.725 43.478 9.01 0.00 0.00 2.15
3187 4647 7.601886 AGTCTGATAAGATTGTTGTGAGAGTTG 59.398 37.037 0.00 0.00 0.00 3.16
3194 4654 8.450578 AAGATTGTTGTGAGAGTTGAATTACA 57.549 30.769 0.00 0.00 0.00 2.41
3245 4705 9.051679 ACAAATTTTTATTTTCACCTGCCTAAC 57.948 29.630 0.00 0.00 0.00 2.34
3252 4712 8.871629 TTATTTTCACCTGCCTAACAAATAGA 57.128 30.769 0.00 0.00 33.04 1.98
3257 4717 7.775053 TCACCTGCCTAACAAATAGAAAATT 57.225 32.000 0.00 0.00 33.04 1.82
3260 4720 8.087750 CACCTGCCTAACAAATAGAAAATTTGA 58.912 33.333 15.35 0.00 40.42 2.69
3261 4721 8.088365 ACCTGCCTAACAAATAGAAAATTTGAC 58.912 33.333 15.35 0.00 40.42 3.18
3262 4722 8.087750 CCTGCCTAACAAATAGAAAATTTGACA 58.912 33.333 15.35 3.96 40.42 3.58
3263 4723 9.474920 CTGCCTAACAAATAGAAAATTTGACAA 57.525 29.630 15.35 0.00 40.42 3.18
3365 4825 1.375908 GCTCACTCGGATGCCACAA 60.376 57.895 0.00 0.00 0.00 3.33
3377 4837 6.502652 TCGGATGCCACAACATAAAATATTG 58.497 36.000 0.00 0.00 0.00 1.90
3451 4916 7.865385 GGATTCTAAGTCTGTATAAGTGCTCAG 59.135 40.741 0.00 0.00 0.00 3.35
3478 4943 6.656270 TGCATTCTGATCTTTCTCTTTTGCTA 59.344 34.615 0.00 0.00 0.00 3.49
3614 5084 8.986847 CACAATCATAGGTAAATTCTGCTCTAG 58.013 37.037 0.00 0.00 0.00 2.43
3670 5362 7.041107 GCAGAAATAAGGAAATGCATGGTTAA 58.959 34.615 0.00 0.00 33.92 2.01
3671 5363 7.712205 GCAGAAATAAGGAAATGCATGGTTAAT 59.288 33.333 0.00 0.00 33.92 1.40
3672 5364 9.603921 CAGAAATAAGGAAATGCATGGTTAATT 57.396 29.630 0.00 0.00 0.00 1.40
3788 5880 5.246981 AGGATGTCACTGGAAATTTCTCA 57.753 39.130 17.42 12.37 0.00 3.27
3927 6073 6.538742 TCTGTTTTGTACTCTCCAAGAAACAG 59.461 38.462 15.93 15.93 39.61 3.16
3939 6090 6.369890 TCTCCAAGAAACAGATGATTCTTTCG 59.630 38.462 13.50 8.45 42.13 3.46
4402 9785 1.539827 ACAGGCAATGTTAACCTTCGC 59.460 47.619 2.48 6.37 39.96 4.70
4421 9804 1.001641 GCCTCACTGAACTGGGCAT 60.002 57.895 2.81 0.00 42.08 4.40
4742 10128 0.034186 CTTGAAGGGGGTATGCAGCA 60.034 55.000 0.00 0.00 0.00 4.41
5009 10400 1.600957 CGGTAGTTCGCGAATCTCCTA 59.399 52.381 26.23 17.80 0.00 2.94
5035 10426 1.649271 GCCTGGGGATTGTGGGAGAT 61.649 60.000 0.00 0.00 0.00 2.75
5156 10547 1.376037 CTGCGTCCAGGAAACTCCC 60.376 63.158 0.00 0.00 40.21 4.30
5203 10594 2.503331 TGTTTCCATGTTGACGAGCAT 58.497 42.857 0.00 0.00 0.00 3.79
5207 10598 1.001860 TCCATGTTGACGAGCATGACA 59.998 47.619 0.00 0.00 43.60 3.58
5262 10653 1.818060 TGGATTGCGAAGGATTTGTGG 59.182 47.619 0.00 0.00 0.00 4.17
5416 10819 1.135803 CATGGTCTTTTTGGGTACGCG 60.136 52.381 3.53 3.53 0.00 6.01
5433 10836 2.791004 ACGCGCGGTACATAATAAGTTC 59.209 45.455 35.22 0.00 0.00 3.01
5434 10837 3.047796 CGCGCGGTACATAATAAGTTCT 58.952 45.455 24.84 0.00 0.00 3.01
5435 10838 3.488310 CGCGCGGTACATAATAAGTTCTT 59.512 43.478 24.84 0.00 0.00 2.52
5436 10839 4.676471 CGCGCGGTACATAATAAGTTCTTA 59.324 41.667 24.84 0.00 0.00 2.10
5437 10840 5.173673 CGCGCGGTACATAATAAGTTCTTAA 59.826 40.000 24.84 0.00 0.00 1.85
5438 10841 6.578691 GCGCGGTACATAATAAGTTCTTAAG 58.421 40.000 8.83 0.00 0.00 1.85
5473 10876 0.250295 TCGGTCTTTCCTTGTGGCTG 60.250 55.000 0.00 0.00 0.00 4.85
5502 10905 3.834489 ATGTCATGAGTGGATGGACTC 57.166 47.619 0.00 0.00 42.46 3.36
5506 10909 2.290847 TGAGTGGATGGACTCAGGC 58.709 57.895 0.00 0.00 45.96 4.85
5507 10910 0.252421 TGAGTGGATGGACTCAGGCT 60.252 55.000 0.00 0.00 45.96 4.58
5508 10911 0.177604 GAGTGGATGGACTCAGGCTG 59.822 60.000 8.58 8.58 41.84 4.85
5509 10912 0.546267 AGTGGATGGACTCAGGCTGT 60.546 55.000 15.27 0.00 0.00 4.40
5510 10913 1.195115 GTGGATGGACTCAGGCTGTA 58.805 55.000 15.27 0.27 0.00 2.74
5511 10914 1.137872 GTGGATGGACTCAGGCTGTAG 59.862 57.143 15.27 12.71 0.00 2.74
5512 10915 0.755686 GGATGGACTCAGGCTGTAGG 59.244 60.000 15.27 8.66 0.00 3.18
5513 10916 1.490574 GATGGACTCAGGCTGTAGGT 58.509 55.000 15.27 11.79 0.00 3.08
5514 10917 1.137872 GATGGACTCAGGCTGTAGGTG 59.862 57.143 15.27 3.84 0.00 4.00
5515 10918 0.904865 TGGACTCAGGCTGTAGGTGG 60.905 60.000 15.27 2.16 0.00 4.61
5516 10919 0.614979 GGACTCAGGCTGTAGGTGGA 60.615 60.000 15.27 0.00 0.00 4.02
5517 10920 0.820871 GACTCAGGCTGTAGGTGGAG 59.179 60.000 15.27 4.96 0.00 3.86
5518 10921 0.616111 ACTCAGGCTGTAGGTGGAGG 60.616 60.000 15.27 0.00 0.00 4.30
5519 10922 0.616111 CTCAGGCTGTAGGTGGAGGT 60.616 60.000 15.27 0.00 0.00 3.85
5520 10923 0.904865 TCAGGCTGTAGGTGGAGGTG 60.905 60.000 15.27 0.00 0.00 4.00
5521 10924 1.613630 AGGCTGTAGGTGGAGGTGG 60.614 63.158 0.00 0.00 0.00 4.61
5522 10925 2.670148 GGCTGTAGGTGGAGGTGGG 61.670 68.421 0.00 0.00 0.00 4.61
5523 10926 1.612442 GCTGTAGGTGGAGGTGGGA 60.612 63.158 0.00 0.00 0.00 4.37
5524 10927 0.983378 GCTGTAGGTGGAGGTGGGAT 60.983 60.000 0.00 0.00 0.00 3.85
5525 10928 1.123928 CTGTAGGTGGAGGTGGGATC 58.876 60.000 0.00 0.00 0.00 3.36
5526 10929 0.415830 TGTAGGTGGAGGTGGGATCA 59.584 55.000 0.00 0.00 0.00 2.92
5527 10930 1.203376 TGTAGGTGGAGGTGGGATCAA 60.203 52.381 0.00 0.00 0.00 2.57
5528 10931 1.486726 GTAGGTGGAGGTGGGATCAAG 59.513 57.143 0.00 0.00 0.00 3.02
5529 10932 0.178861 AGGTGGAGGTGGGATCAAGT 60.179 55.000 0.00 0.00 0.00 3.16
5530 10933 0.035056 GGTGGAGGTGGGATCAAGTG 60.035 60.000 0.00 0.00 0.00 3.16
5531 10934 0.035056 GTGGAGGTGGGATCAAGTGG 60.035 60.000 0.00 0.00 0.00 4.00
5532 10935 1.207488 TGGAGGTGGGATCAAGTGGG 61.207 60.000 0.00 0.00 0.00 4.61
5533 10936 0.914417 GGAGGTGGGATCAAGTGGGA 60.914 60.000 0.00 0.00 0.00 4.37
5534 10937 0.253327 GAGGTGGGATCAAGTGGGAC 59.747 60.000 0.00 0.00 0.00 4.46
5535 10938 0.178861 AGGTGGGATCAAGTGGGACT 60.179 55.000 0.00 0.00 0.00 3.85
5536 10939 1.080498 AGGTGGGATCAAGTGGGACTA 59.920 52.381 0.00 0.00 0.00 2.59
5537 10940 1.913419 GGTGGGATCAAGTGGGACTAA 59.087 52.381 0.00 0.00 0.00 2.24
5538 10941 2.307686 GGTGGGATCAAGTGGGACTAAA 59.692 50.000 0.00 0.00 0.00 1.85
5539 10942 3.053619 GGTGGGATCAAGTGGGACTAAAT 60.054 47.826 0.00 0.00 0.00 1.40
5540 10943 4.165372 GGTGGGATCAAGTGGGACTAAATA 59.835 45.833 0.00 0.00 0.00 1.40
5541 10944 5.368989 GTGGGATCAAGTGGGACTAAATAG 58.631 45.833 0.00 0.00 0.00 1.73
5542 10945 4.141482 TGGGATCAAGTGGGACTAAATAGC 60.141 45.833 0.00 0.00 0.00 2.97
5543 10946 4.390264 GGATCAAGTGGGACTAAATAGCC 58.610 47.826 0.00 0.00 0.00 3.93
5544 10947 3.926058 TCAAGTGGGACTAAATAGCCC 57.074 47.619 11.01 11.01 38.98 5.19
5545 10948 3.186283 TCAAGTGGGACTAAATAGCCCA 58.814 45.455 14.70 14.70 42.97 5.36
5546 10949 3.785887 TCAAGTGGGACTAAATAGCCCAT 59.214 43.478 19.03 7.59 45.07 4.00
5547 10950 4.137543 CAAGTGGGACTAAATAGCCCATC 58.862 47.826 19.03 14.41 45.07 3.51
5548 10951 2.711547 AGTGGGACTAAATAGCCCATCC 59.288 50.000 19.03 11.34 45.07 3.51
5549 10952 2.062636 TGGGACTAAATAGCCCATCCC 58.937 52.381 14.70 10.93 45.24 3.85
5550 10953 2.062636 GGGACTAAATAGCCCATCCCA 58.937 52.381 12.35 0.00 44.53 4.37
5551 10954 2.224793 GGGACTAAATAGCCCATCCCAC 60.225 54.545 12.35 0.00 44.53 4.61
5552 10955 2.711547 GGACTAAATAGCCCATCCCACT 59.288 50.000 0.00 0.00 0.00 4.00
5553 10956 3.138468 GGACTAAATAGCCCATCCCACTT 59.862 47.826 0.00 0.00 0.00 3.16
5554 10957 4.349930 GGACTAAATAGCCCATCCCACTTA 59.650 45.833 0.00 0.00 0.00 2.24
5555 10958 5.513267 GGACTAAATAGCCCATCCCACTTAG 60.513 48.000 0.00 0.00 0.00 2.18
5556 10959 3.884037 AAATAGCCCATCCCACTTAGG 57.116 47.619 0.00 0.00 37.03 2.69
5568 10971 3.713826 CCACTTAGGGTAGCAAAGGAA 57.286 47.619 10.03 0.00 0.00 3.36
5570 10973 4.403734 CCACTTAGGGTAGCAAAGGAAAA 58.596 43.478 10.03 0.00 0.00 2.29
5571 10974 5.016831 CCACTTAGGGTAGCAAAGGAAAAT 58.983 41.667 10.03 0.00 0.00 1.82
5669 11074 1.826054 CGGACTCTCAGGCGATCCT 60.826 63.158 0.00 0.00 45.66 3.24
6060 11466 2.234661 TGAGATCAGCGTGGAATCTTGT 59.765 45.455 0.00 0.00 0.00 3.16
6084 11490 4.187694 CAGGAAGTAGAATTCAGAGCCAC 58.812 47.826 8.44 0.00 0.00 5.01
6085 11491 3.118956 AGGAAGTAGAATTCAGAGCCACG 60.119 47.826 8.44 0.00 0.00 4.94
6174 11583 0.984230 TGGATCTTCCGAAACTGCCT 59.016 50.000 0.00 0.00 40.17 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.960938 TGAACATATCACATCTAGGGCAC 58.039 43.478 0.00 0.00 31.50 5.01
1 2 5.545335 AGATGAACATATCACATCTAGGGCA 59.455 40.000 0.00 0.00 45.55 5.36
2 3 5.873712 CAGATGAACATATCACATCTAGGGC 59.126 44.000 0.00 0.00 45.61 5.19
3 4 5.873712 GCAGATGAACATATCACATCTAGGG 59.126 44.000 0.00 0.00 45.61 3.53
4 5 6.699366 AGCAGATGAACATATCACATCTAGG 58.301 40.000 0.00 0.00 45.61 3.02
5 6 9.303537 CATAGCAGATGAACATATCACATCTAG 57.696 37.037 0.00 0.00 45.61 2.43
6 7 7.763071 GCATAGCAGATGAACATATCACATCTA 59.237 37.037 0.00 0.00 45.61 1.98
8 9 6.594547 AGCATAGCAGATGAACATATCACATC 59.405 38.462 2.96 0.00 41.93 3.06
9 10 6.473758 AGCATAGCAGATGAACATATCACAT 58.526 36.000 2.96 0.00 41.93 3.21
10 11 5.861727 AGCATAGCAGATGAACATATCACA 58.138 37.500 2.96 0.00 41.93 3.58
11 12 7.095910 ACTAGCATAGCAGATGAACATATCAC 58.904 38.462 2.96 0.00 44.39 3.06
12 13 7.237209 ACTAGCATAGCAGATGAACATATCA 57.763 36.000 2.96 0.00 44.39 2.15
13 14 7.009083 CGAACTAGCATAGCAGATGAACATATC 59.991 40.741 2.96 0.00 44.39 1.63
14 15 6.810676 CGAACTAGCATAGCAGATGAACATAT 59.189 38.462 2.96 0.00 44.39 1.78
15 16 6.152379 CGAACTAGCATAGCAGATGAACATA 58.848 40.000 2.96 0.00 44.39 2.29
16 17 4.987285 CGAACTAGCATAGCAGATGAACAT 59.013 41.667 2.96 0.00 44.39 2.71
17 18 4.363138 CGAACTAGCATAGCAGATGAACA 58.637 43.478 2.96 0.00 44.39 3.18
18 19 3.183373 GCGAACTAGCATAGCAGATGAAC 59.817 47.826 2.96 0.00 44.39 3.18
19 20 3.181476 TGCGAACTAGCATAGCAGATGAA 60.181 43.478 2.96 0.00 44.39 2.57
20 21 2.362077 TGCGAACTAGCATAGCAGATGA 59.638 45.455 2.96 0.00 44.39 2.92
21 22 2.747436 TGCGAACTAGCATAGCAGATG 58.253 47.619 0.68 0.00 44.39 2.90
30 31 7.710907 AGATTAAACTAATCATGCGAACTAGCA 59.289 33.333 8.66 0.00 45.41 3.49
31 32 8.077836 AGATTAAACTAATCATGCGAACTAGC 57.922 34.615 8.66 0.00 45.41 3.42
32 33 9.469807 AGAGATTAAACTAATCATGCGAACTAG 57.530 33.333 8.66 0.00 45.41 2.57
33 34 9.249457 CAGAGATTAAACTAATCATGCGAACTA 57.751 33.333 8.66 0.00 45.41 2.24
34 35 7.254590 GCAGAGATTAAACTAATCATGCGAACT 60.255 37.037 15.10 0.00 45.41 3.01
35 36 6.848296 GCAGAGATTAAACTAATCATGCGAAC 59.152 38.462 15.10 0.00 45.41 3.95
36 37 6.948353 GCAGAGATTAAACTAATCATGCGAA 58.052 36.000 15.10 0.00 45.41 4.70
37 38 6.530913 GCAGAGATTAAACTAATCATGCGA 57.469 37.500 15.10 0.00 45.41 5.10
40 41 7.012138 ACAGCAGCAGAGATTAAACTAATCATG 59.988 37.037 8.66 7.75 45.41 3.07
41 42 7.012138 CACAGCAGCAGAGATTAAACTAATCAT 59.988 37.037 8.66 0.00 45.41 2.45
42 43 6.314648 CACAGCAGCAGAGATTAAACTAATCA 59.685 38.462 8.66 0.00 45.41 2.57
43 44 6.238320 CCACAGCAGCAGAGATTAAACTAATC 60.238 42.308 0.00 0.00 43.77 1.75
44 45 5.587844 CCACAGCAGCAGAGATTAAACTAAT 59.412 40.000 0.00 0.00 0.00 1.73
45 46 4.937620 CCACAGCAGCAGAGATTAAACTAA 59.062 41.667 0.00 0.00 0.00 2.24
46 47 4.020218 ACCACAGCAGCAGAGATTAAACTA 60.020 41.667 0.00 0.00 0.00 2.24
47 48 3.244700 ACCACAGCAGCAGAGATTAAACT 60.245 43.478 0.00 0.00 0.00 2.66
48 49 3.077359 ACCACAGCAGCAGAGATTAAAC 58.923 45.455 0.00 0.00 0.00 2.01
49 50 3.244526 TGACCACAGCAGCAGAGATTAAA 60.245 43.478 0.00 0.00 0.00 1.52
50 51 2.302733 TGACCACAGCAGCAGAGATTAA 59.697 45.455 0.00 0.00 0.00 1.40
51 52 1.901833 TGACCACAGCAGCAGAGATTA 59.098 47.619 0.00 0.00 0.00 1.75
52 53 0.689055 TGACCACAGCAGCAGAGATT 59.311 50.000 0.00 0.00 0.00 2.40
53 54 0.910338 ATGACCACAGCAGCAGAGAT 59.090 50.000 0.00 0.00 0.00 2.75
54 55 0.036671 CATGACCACAGCAGCAGAGA 60.037 55.000 0.00 0.00 0.00 3.10
55 56 0.036671 TCATGACCACAGCAGCAGAG 60.037 55.000 0.00 0.00 0.00 3.35
56 57 0.616891 ATCATGACCACAGCAGCAGA 59.383 50.000 0.00 0.00 0.00 4.26
57 58 1.460504 AATCATGACCACAGCAGCAG 58.539 50.000 0.00 0.00 0.00 4.24
58 59 1.913778 AAATCATGACCACAGCAGCA 58.086 45.000 0.00 0.00 0.00 4.41
59 60 3.881688 AGATAAATCATGACCACAGCAGC 59.118 43.478 0.00 0.00 0.00 5.25
60 61 5.821470 AGAAGATAAATCATGACCACAGCAG 59.179 40.000 0.00 0.00 0.00 4.24
61 62 5.587443 CAGAAGATAAATCATGACCACAGCA 59.413 40.000 0.00 0.00 0.00 4.41
62 63 5.587844 ACAGAAGATAAATCATGACCACAGC 59.412 40.000 0.00 0.00 0.00 4.40
63 64 7.621428 AACAGAAGATAAATCATGACCACAG 57.379 36.000 0.00 0.00 0.00 3.66
64 65 9.685276 ATAAACAGAAGATAAATCATGACCACA 57.315 29.630 0.00 0.00 0.00 4.17
67 68 9.869844 CGAATAAACAGAAGATAAATCATGACC 57.130 33.333 0.00 0.00 0.00 4.02
68 69 9.869844 CCGAATAAACAGAAGATAAATCATGAC 57.130 33.333 0.00 0.00 0.00 3.06
69 70 9.830975 TCCGAATAAACAGAAGATAAATCATGA 57.169 29.630 0.00 0.00 0.00 3.07
79 80 9.031360 CGAGATTTAATCCGAATAAACAGAAGA 57.969 33.333 0.78 0.00 0.00 2.87
80 81 8.818057 ACGAGATTTAATCCGAATAAACAGAAG 58.182 33.333 17.75 0.00 0.00 2.85
81 82 8.712285 ACGAGATTTAATCCGAATAAACAGAA 57.288 30.769 17.75 0.00 0.00 3.02
82 83 9.459640 CTACGAGATTTAATCCGAATAAACAGA 57.540 33.333 17.75 0.00 0.00 3.41
83 84 9.245962 ACTACGAGATTTAATCCGAATAAACAG 57.754 33.333 17.75 8.49 0.00 3.16
90 91 8.545420 GCAAATTACTACGAGATTTAATCCGAA 58.455 33.333 17.75 6.53 0.00 4.30
91 92 7.924412 AGCAAATTACTACGAGATTTAATCCGA 59.076 33.333 17.75 5.77 0.00 4.55
92 93 8.073355 AGCAAATTACTACGAGATTTAATCCG 57.927 34.615 12.00 12.00 0.00 4.18
93 94 9.042008 TGAGCAAATTACTACGAGATTTAATCC 57.958 33.333 0.78 0.00 0.00 3.01
100 101 9.209175 GGAAATATGAGCAAATTACTACGAGAT 57.791 33.333 0.00 0.00 0.00 2.75
101 102 8.201464 TGGAAATATGAGCAAATTACTACGAGA 58.799 33.333 0.00 0.00 0.00 4.04
102 103 8.365399 TGGAAATATGAGCAAATTACTACGAG 57.635 34.615 0.00 0.00 0.00 4.18
103 104 8.609176 GTTGGAAATATGAGCAAATTACTACGA 58.391 33.333 0.00 0.00 0.00 3.43
104 105 8.394877 TGTTGGAAATATGAGCAAATTACTACG 58.605 33.333 0.00 0.00 0.00 3.51
105 106 9.503427 GTGTTGGAAATATGAGCAAATTACTAC 57.497 33.333 0.00 0.00 0.00 2.73
106 107 9.237187 TGTGTTGGAAATATGAGCAAATTACTA 57.763 29.630 0.00 0.00 0.00 1.82
107 108 8.121305 TGTGTTGGAAATATGAGCAAATTACT 57.879 30.769 0.00 0.00 0.00 2.24
108 109 8.755696 TTGTGTTGGAAATATGAGCAAATTAC 57.244 30.769 0.00 0.00 0.00 1.89
109 110 9.202273 GTTTGTGTTGGAAATATGAGCAAATTA 57.798 29.630 0.00 0.00 0.00 1.40
110 111 7.714377 TGTTTGTGTTGGAAATATGAGCAAATT 59.286 29.630 0.00 0.00 0.00 1.82
111 112 7.215789 TGTTTGTGTTGGAAATATGAGCAAAT 58.784 30.769 0.00 0.00 0.00 2.32
112 113 6.577103 TGTTTGTGTTGGAAATATGAGCAAA 58.423 32.000 0.00 0.00 0.00 3.68
113 114 6.154203 TGTTTGTGTTGGAAATATGAGCAA 57.846 33.333 0.00 0.00 0.00 3.91
114 115 5.781210 TGTTTGTGTTGGAAATATGAGCA 57.219 34.783 0.00 0.00 0.00 4.26
115 116 5.982516 TGTTGTTTGTGTTGGAAATATGAGC 59.017 36.000 0.00 0.00 0.00 4.26
116 117 7.042791 GGTTGTTGTTTGTGTTGGAAATATGAG 60.043 37.037 0.00 0.00 0.00 2.90
117 118 6.758886 GGTTGTTGTTTGTGTTGGAAATATGA 59.241 34.615 0.00 0.00 0.00 2.15
118 119 6.536582 TGGTTGTTGTTTGTGTTGGAAATATG 59.463 34.615 0.00 0.00 0.00 1.78
119 120 6.644347 TGGTTGTTGTTTGTGTTGGAAATAT 58.356 32.000 0.00 0.00 0.00 1.28
120 121 6.037786 TGGTTGTTGTTTGTGTTGGAAATA 57.962 33.333 0.00 0.00 0.00 1.40
121 122 4.899502 TGGTTGTTGTTTGTGTTGGAAAT 58.100 34.783 0.00 0.00 0.00 2.17
122 123 4.336889 TGGTTGTTGTTTGTGTTGGAAA 57.663 36.364 0.00 0.00 0.00 3.13
123 124 4.248859 CATGGTTGTTGTTTGTGTTGGAA 58.751 39.130 0.00 0.00 0.00 3.53
124 125 3.259374 ACATGGTTGTTGTTTGTGTTGGA 59.741 39.130 0.00 0.00 29.55 3.53
125 126 3.594134 ACATGGTTGTTGTTTGTGTTGG 58.406 40.909 0.00 0.00 29.55 3.77
126 127 4.803088 CCTACATGGTTGTTGTTTGTGTTG 59.197 41.667 0.00 0.00 37.28 3.33
127 128 4.707448 TCCTACATGGTTGTTGTTTGTGTT 59.293 37.500 0.00 0.00 37.28 3.32
128 129 4.097286 GTCCTACATGGTTGTTGTTTGTGT 59.903 41.667 0.00 0.00 37.28 3.72
129 130 4.338118 AGTCCTACATGGTTGTTGTTTGTG 59.662 41.667 0.00 0.00 37.28 3.33
130 131 4.532834 AGTCCTACATGGTTGTTGTTTGT 58.467 39.130 0.00 0.00 37.28 2.83
131 132 4.821805 AGAGTCCTACATGGTTGTTGTTTG 59.178 41.667 0.00 0.00 37.28 2.93
132 133 4.821805 CAGAGTCCTACATGGTTGTTGTTT 59.178 41.667 0.00 0.00 37.28 2.83
133 134 4.102524 TCAGAGTCCTACATGGTTGTTGTT 59.897 41.667 0.00 0.00 37.28 2.83
160 161 3.299977 GGTTTTGGGTGGGCCGAC 61.300 66.667 9.83 9.83 34.97 4.79
161 162 4.607025 GGGTTTTGGGTGGGCCGA 62.607 66.667 0.00 0.00 34.97 5.54
186 187 2.104963 GGAAAGAACAGAGACACCAGGT 59.895 50.000 0.00 0.00 0.00 4.00
188 189 3.323403 AGAGGAAAGAACAGAGACACCAG 59.677 47.826 0.00 0.00 0.00 4.00
189 190 3.309296 AGAGGAAAGAACAGAGACACCA 58.691 45.455 0.00 0.00 0.00 4.17
190 191 4.344359 AAGAGGAAAGAACAGAGACACC 57.656 45.455 0.00 0.00 0.00 4.16
199 200 8.384607 ACAAATGTAGAGAAAGAGGAAAGAAC 57.615 34.615 0.00 0.00 0.00 3.01
217 218 5.240623 TGTCGGCAAGATAGAAAACAAATGT 59.759 36.000 0.00 0.00 0.00 2.71
221 222 3.500680 GGTGTCGGCAAGATAGAAAACAA 59.499 43.478 0.00 0.00 0.00 2.83
271 272 3.373565 GAAGGGTTTGGCAGGCGG 61.374 66.667 0.00 0.00 0.00 6.13
272 273 3.373565 GGAAGGGTTTGGCAGGCG 61.374 66.667 0.00 0.00 0.00 5.52
273 274 2.997315 GGGAAGGGTTTGGCAGGC 60.997 66.667 0.00 0.00 0.00 4.85
274 275 1.607467 CTGGGAAGGGTTTGGCAGG 60.607 63.158 0.00 0.00 0.00 4.85
311 312 0.766674 TGTGGGAGCTTGGGTGTAGT 60.767 55.000 0.00 0.00 0.00 2.73
321 322 2.032681 GAAAGCGGTGTGGGAGCT 59.967 61.111 0.00 0.00 43.90 4.09
338 340 1.021390 GTGGACCGACAATGGAGCTG 61.021 60.000 0.00 0.00 0.00 4.24
367 369 0.039180 TACCTGTGCGGAGGAAGAGA 59.961 55.000 7.80 0.00 36.51 3.10
381 383 1.273606 CATAGAGGCGGATGGTACCTG 59.726 57.143 14.36 1.56 32.67 4.00
392 394 2.350868 CGTGATGAGTACCATAGAGGCG 60.351 54.545 0.00 0.00 43.14 5.52
394 396 2.029828 GGCGTGATGAGTACCATAGAGG 60.030 54.545 0.00 0.00 45.67 3.69
396 398 1.961394 GGGCGTGATGAGTACCATAGA 59.039 52.381 0.00 0.00 35.17 1.98
397 399 1.335964 CGGGCGTGATGAGTACCATAG 60.336 57.143 0.00 0.00 35.17 2.23
409 411 1.153329 AAACACTTGTCGGGCGTGA 60.153 52.632 0.00 0.00 33.13 4.35
436 438 3.562182 AGGGATAAAAATTAGCACGGGG 58.438 45.455 0.00 0.00 0.00 5.73
470 477 7.844493 ATGTACTGCATATCCAAATCCATTT 57.156 32.000 0.00 0.00 35.74 2.32
479 486 6.873605 GTGCTTGTATATGTACTGCATATCCA 59.126 38.462 17.87 0.00 45.02 3.41
498 505 3.181507 CGGGTGAATCAATGTAGTGCTTG 60.182 47.826 0.00 0.00 0.00 4.01
499 506 3.009723 CGGGTGAATCAATGTAGTGCTT 58.990 45.455 0.00 0.00 0.00 3.91
517 524 2.224079 CGCATATCAAATCCTTGTCGGG 59.776 50.000 0.00 0.00 33.94 5.14
524 531 7.719633 ACACTAAATAACCGCATATCAAATCCT 59.280 33.333 0.00 0.00 0.00 3.24
584 592 3.283020 TGGTCATCCAGTCGTAGCT 57.717 52.632 0.00 0.00 39.03 3.32
602 610 2.268076 AAAAACCGATGCTGGCGCT 61.268 52.632 7.64 0.00 36.97 5.92
605 613 0.109132 CCTCAAAAACCGATGCTGGC 60.109 55.000 0.00 0.00 0.00 4.85
608 616 2.493278 CCAATCCTCAAAAACCGATGCT 59.507 45.455 0.00 0.00 0.00 3.79
645 653 6.624423 GGGCATATTCAAATCACATATGTCC 58.376 40.000 5.07 6.33 44.45 4.02
650 658 8.759481 TGTTAAGGGCATATTCAAATCACATA 57.241 30.769 0.00 0.00 0.00 2.29
654 662 7.201902 GGTGATGTTAAGGGCATATTCAAATCA 60.202 37.037 0.00 0.00 0.00 2.57
656 664 6.840705 AGGTGATGTTAAGGGCATATTCAAAT 59.159 34.615 0.00 0.00 0.00 2.32
707 716 1.478510 TCCAGGAAGTTGCGATCTCTC 59.521 52.381 0.00 0.00 0.00 3.20
708 717 1.561643 TCCAGGAAGTTGCGATCTCT 58.438 50.000 0.00 0.00 0.00 3.10
769 778 7.414098 CCATCTCAAACCAGTAAAATAGGAACG 60.414 40.741 0.00 0.00 0.00 3.95
853 865 4.307432 GACGAAACTTGTCAAGATCAGGA 58.693 43.478 19.53 0.00 36.37 3.86
1140 1341 3.787001 CCGAGGGTGAAGGAGCCC 61.787 72.222 0.00 0.00 44.14 5.19
1390 1604 3.697747 TACGACCAGGTTGCCGGG 61.698 66.667 6.76 2.83 44.45 5.73
1470 1684 1.001641 GCCCAGCTTCATGTCAGGT 60.002 57.895 0.00 0.00 0.00 4.00
1582 1796 2.783288 CGAGCTCCGGTAACCCCTC 61.783 68.421 8.47 0.00 33.91 4.30
1920 2149 4.143333 CCGCAGAACCCCGACGAT 62.143 66.667 0.00 0.00 0.00 3.73
2014 2278 2.736236 CAGCGCTGCGTGTCTTCT 60.736 61.111 26.68 7.86 0.00 2.85
2513 2941 3.257375 TCACAGCATTACGAGGTGTAACT 59.743 43.478 0.00 0.00 45.43 2.24
2522 2950 6.816640 AGCTAGTAAATTTCACAGCATTACGA 59.183 34.615 15.91 0.00 32.99 3.43
2534 2962 8.870879 ACGATCAACAGTTAGCTAGTAAATTTC 58.129 33.333 0.00 0.00 0.00 2.17
2549 2977 2.408271 ATGGATGCACGATCAACAGT 57.592 45.000 0.00 0.00 31.91 3.55
2701 3261 5.179533 TGAGATAGCTAGGCTAGATACGTG 58.820 45.833 25.37 0.00 44.66 4.49
2709 3269 3.421844 TGCGAATGAGATAGCTAGGCTA 58.578 45.455 0.00 1.64 45.55 3.93
2844 3409 7.220030 TCTCTGCATAATAAAAAGAGCCCTAG 58.780 38.462 0.00 0.00 35.42 3.02
2992 3573 8.443953 ACTTCTATGAGGATTGCAAAGTATTC 57.556 34.615 1.71 0.00 0.00 1.75
3062 3643 7.786030 TGAGTGGGTATTTCAAAATCAAAACA 58.214 30.769 0.00 0.00 0.00 2.83
3081 3662 9.529325 TTATAATTAAGTCGATCAGTTGAGTGG 57.471 33.333 0.00 0.00 0.00 4.00
3105 4039 7.918562 TGATCGTGATTCGTGAATGAGTATTTA 59.081 33.333 0.00 0.00 40.80 1.40
3111 4045 5.648033 AATGATCGTGATTCGTGAATGAG 57.352 39.130 0.00 0.00 40.80 2.90
3113 4047 7.149240 GCAATAAATGATCGTGATTCGTGAATG 60.149 37.037 0.00 0.00 40.80 2.67
3117 4051 5.500825 TGCAATAAATGATCGTGATTCGTG 58.499 37.500 0.00 0.00 40.80 4.35
3118 4052 5.294306 ACTGCAATAAATGATCGTGATTCGT 59.706 36.000 0.00 0.00 40.80 3.85
3119 4053 5.618395 CACTGCAATAAATGATCGTGATTCG 59.382 40.000 0.00 0.00 41.41 3.34
3120 4054 6.489675 ACACTGCAATAAATGATCGTGATTC 58.510 36.000 2.84 0.00 0.00 2.52
3121 4055 6.441093 ACACTGCAATAAATGATCGTGATT 57.559 33.333 2.84 0.00 0.00 2.57
3122 4056 6.763135 AGTACACTGCAATAAATGATCGTGAT 59.237 34.615 0.00 0.00 0.00 3.06
3144 4078 3.442625 CAGACTTCCGGATGTGTACAGTA 59.557 47.826 26.24 0.00 0.00 2.74
3146 4080 2.492088 TCAGACTTCCGGATGTGTACAG 59.508 50.000 26.24 11.48 0.00 2.74
3169 4623 8.450578 TGTAATTCAACTCTCACAACAATCTT 57.549 30.769 0.00 0.00 0.00 2.40
3223 4683 9.791801 ATTTGTTAGGCAGGTGAAAATAAAAAT 57.208 25.926 0.00 0.00 0.00 1.82
3234 4694 8.087750 TCAAATTTTCTATTTGTTAGGCAGGTG 58.912 33.333 9.33 0.00 39.36 4.00
3235 4695 8.088365 GTCAAATTTTCTATTTGTTAGGCAGGT 58.912 33.333 9.33 0.00 39.36 4.00
3237 4697 9.474920 TTGTCAAATTTTCTATTTGTTAGGCAG 57.525 29.630 9.33 0.00 39.36 4.85
3238 4698 9.823647 TTTGTCAAATTTTCTATTTGTTAGGCA 57.176 25.926 9.33 0.00 39.36 4.75
3451 4916 6.089150 GCAAAAGAGAAAGATCAGAATGCAAC 59.911 38.462 0.00 0.00 34.76 4.17
3478 4943 8.561738 AACTTTTTATGGTCATCTGTTATCGT 57.438 30.769 0.00 0.00 0.00 3.73
3614 5084 9.364989 TGCAAAATAATAGTAAAATTGAGCCAC 57.635 29.630 0.00 0.00 0.00 5.01
3788 5880 3.144506 CTGGCCGATCATATTGCTTTCT 58.855 45.455 0.00 0.00 0.00 2.52
3927 6073 4.382754 GCCACAACAAACGAAAGAATCATC 59.617 41.667 0.00 0.00 0.00 2.92
4402 9785 2.743928 GCCCAGTTCAGTGAGGCG 60.744 66.667 5.46 0.00 33.18 5.52
4480 9863 4.065088 CCCTATGGATAACATTGTCACCG 58.935 47.826 0.00 0.00 41.03 4.94
4649 10032 8.284945 TGAATGGAGAAACAAAGATCCTATTG 57.715 34.615 0.00 0.00 32.79 1.90
4979 10370 5.922739 TCGCGAACTACCGTAAGATTATA 57.077 39.130 6.20 0.00 43.02 0.98
5009 10400 1.382146 CAATCCCCAGGCCTGCAAT 60.382 57.895 28.39 16.22 0.00 3.56
5035 10426 3.681417 CAGAAGTTCTGCGATCATGTTCA 59.319 43.478 19.55 0.00 37.72 3.18
5156 10547 1.742880 CATGGTCGGCCTGTCACAG 60.743 63.158 7.97 0.00 35.27 3.66
5262 10653 2.034305 GCCCATGTGATGAATCTGAAGC 59.966 50.000 0.00 0.00 0.00 3.86
5392 10795 3.190535 CGTACCCAAAAAGACCATGGAAG 59.809 47.826 21.47 0.00 36.27 3.46
5397 10800 1.161843 CGCGTACCCAAAAAGACCAT 58.838 50.000 0.00 0.00 0.00 3.55
5416 10819 7.652507 AGAGCTTAAGAACTTATTATGTACCGC 59.347 37.037 6.67 0.00 0.00 5.68
5433 10836 8.649973 ACCGACATTTTTATAGAGAGCTTAAG 57.350 34.615 0.00 0.00 0.00 1.85
5434 10837 8.475639 AGACCGACATTTTTATAGAGAGCTTAA 58.524 33.333 0.00 0.00 0.00 1.85
5435 10838 8.008513 AGACCGACATTTTTATAGAGAGCTTA 57.991 34.615 0.00 0.00 0.00 3.09
5436 10839 6.879400 AGACCGACATTTTTATAGAGAGCTT 58.121 36.000 0.00 0.00 0.00 3.74
5437 10840 6.472686 AGACCGACATTTTTATAGAGAGCT 57.527 37.500 0.00 0.00 0.00 4.09
5438 10841 7.254488 GGAAAGACCGACATTTTTATAGAGAGC 60.254 40.741 0.00 0.00 0.00 4.09
5473 10876 6.648310 CCATCCACTCATGACATAGTAACATC 59.352 42.308 0.00 0.00 0.00 3.06
5502 10905 1.599047 CACCTCCACCTACAGCCTG 59.401 63.158 0.00 0.00 0.00 4.85
5503 10906 1.613630 CCACCTCCACCTACAGCCT 60.614 63.158 0.00 0.00 0.00 4.58
5504 10907 2.670148 CCCACCTCCACCTACAGCC 61.670 68.421 0.00 0.00 0.00 4.85
5505 10908 0.983378 ATCCCACCTCCACCTACAGC 60.983 60.000 0.00 0.00 0.00 4.40
5506 10909 1.123928 GATCCCACCTCCACCTACAG 58.876 60.000 0.00 0.00 0.00 2.74
5507 10910 0.415830 TGATCCCACCTCCACCTACA 59.584 55.000 0.00 0.00 0.00 2.74
5508 10911 1.486726 CTTGATCCCACCTCCACCTAC 59.513 57.143 0.00 0.00 0.00 3.18
5509 10912 1.080498 ACTTGATCCCACCTCCACCTA 59.920 52.381 0.00 0.00 0.00 3.08
5510 10913 0.178861 ACTTGATCCCACCTCCACCT 60.179 55.000 0.00 0.00 0.00 4.00
5511 10914 0.035056 CACTTGATCCCACCTCCACC 60.035 60.000 0.00 0.00 0.00 4.61
5512 10915 0.035056 CCACTTGATCCCACCTCCAC 60.035 60.000 0.00 0.00 0.00 4.02
5513 10916 1.207488 CCCACTTGATCCCACCTCCA 61.207 60.000 0.00 0.00 0.00 3.86
5514 10917 0.914417 TCCCACTTGATCCCACCTCC 60.914 60.000 0.00 0.00 0.00 4.30
5515 10918 0.253327 GTCCCACTTGATCCCACCTC 59.747 60.000 0.00 0.00 0.00 3.85
5516 10919 0.178861 AGTCCCACTTGATCCCACCT 60.179 55.000 0.00 0.00 0.00 4.00
5517 10920 1.580059 TAGTCCCACTTGATCCCACC 58.420 55.000 0.00 0.00 0.00 4.61
5518 10921 3.713826 TTTAGTCCCACTTGATCCCAC 57.286 47.619 0.00 0.00 0.00 4.61
5519 10922 4.141482 GCTATTTAGTCCCACTTGATCCCA 60.141 45.833 0.00 0.00 0.00 4.37
5520 10923 4.390264 GCTATTTAGTCCCACTTGATCCC 58.610 47.826 0.00 0.00 0.00 3.85
5521 10924 4.390264 GGCTATTTAGTCCCACTTGATCC 58.610 47.826 0.00 0.00 0.00 3.36
5522 10925 4.390264 GGGCTATTTAGTCCCACTTGATC 58.610 47.826 10.44 0.00 42.26 2.92
5523 10926 4.439253 GGGCTATTTAGTCCCACTTGAT 57.561 45.455 10.44 0.00 42.26 2.57
5524 10927 3.926058 GGGCTATTTAGTCCCACTTGA 57.074 47.619 10.44 0.00 42.26 3.02
5532 10935 4.439253 AAGTGGGATGGGCTATTTAGTC 57.561 45.455 0.00 0.00 0.00 2.59
5533 10936 4.351111 CCTAAGTGGGATGGGCTATTTAGT 59.649 45.833 0.00 0.00 0.00 2.24
5534 10937 4.911390 CCTAAGTGGGATGGGCTATTTAG 58.089 47.826 0.00 0.00 0.00 1.85
5535 10938 4.993705 CCTAAGTGGGATGGGCTATTTA 57.006 45.455 0.00 0.00 0.00 1.40
5536 10939 3.884037 CCTAAGTGGGATGGGCTATTT 57.116 47.619 0.00 0.00 0.00 1.40
5548 10951 3.713826 TTCCTTTGCTACCCTAAGTGG 57.286 47.619 0.00 0.00 0.00 4.00
5549 10952 6.183360 CGTATTTTCCTTTGCTACCCTAAGTG 60.183 42.308 0.00 0.00 0.00 3.16
5550 10953 5.878669 CGTATTTTCCTTTGCTACCCTAAGT 59.121 40.000 0.00 0.00 0.00 2.24
5551 10954 5.878669 ACGTATTTTCCTTTGCTACCCTAAG 59.121 40.000 0.00 0.00 0.00 2.18
5552 10955 5.807909 ACGTATTTTCCTTTGCTACCCTAA 58.192 37.500 0.00 0.00 0.00 2.69
5553 10956 5.188359 AGACGTATTTTCCTTTGCTACCCTA 59.812 40.000 0.00 0.00 0.00 3.53
5554 10957 4.019591 AGACGTATTTTCCTTTGCTACCCT 60.020 41.667 0.00 0.00 0.00 4.34
5555 10958 4.259356 AGACGTATTTTCCTTTGCTACCC 58.741 43.478 0.00 0.00 0.00 3.69
5556 10959 4.032558 CGAGACGTATTTTCCTTTGCTACC 59.967 45.833 0.00 0.00 0.00 3.18
5557 10960 4.624452 ACGAGACGTATTTTCCTTTGCTAC 59.376 41.667 0.00 0.00 38.73 3.58
5558 10961 4.813027 ACGAGACGTATTTTCCTTTGCTA 58.187 39.130 0.00 0.00 38.73 3.49
5559 10962 3.660865 ACGAGACGTATTTTCCTTTGCT 58.339 40.909 0.00 0.00 38.73 3.91
5560 10963 4.201656 GGTACGAGACGTATTTTCCTTTGC 60.202 45.833 7.24 0.00 44.12 3.68
5568 10971 4.578105 CCTAGAAGGGTACGAGACGTATTT 59.422 45.833 7.24 3.64 44.12 1.40
5570 10973 3.737850 CCTAGAAGGGTACGAGACGTAT 58.262 50.000 7.24 0.00 44.12 3.06
5571 10974 3.185246 CCTAGAAGGGTACGAGACGTA 57.815 52.381 0.00 0.00 41.54 3.57
5669 11074 2.769621 ATGCCTCGCCTGGGATCA 60.770 61.111 0.00 0.00 32.51 2.92
5671 11076 2.447379 AGATGCCTCGCCTGGGAT 60.447 61.111 0.00 0.00 40.94 3.85
6060 11466 3.369892 GGCTCTGAATTCTACTTCCTGCA 60.370 47.826 7.05 0.00 0.00 4.41
6084 11490 6.387465 TGTACAGAGAACAAGTTATCTTCCG 58.613 40.000 7.32 0.62 38.91 4.30
6085 11491 7.603651 TCTGTACAGAGAACAAGTTATCTTCC 58.396 38.462 21.74 0.60 38.91 3.46
6174 11583 2.093890 CATATGGAGCAAGCAACACCA 58.906 47.619 0.00 0.00 35.09 4.17
6206 11615 1.600916 GCTCCACTTCGCCTGGTTT 60.601 57.895 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.