Multiple sequence alignment - TraesCS2A01G533100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G533100 chr2A 100.000 2805 0 0 783 3587 749094235 749091431 0.000000e+00 5180
1 TraesCS2A01G533100 chr2A 100.000 337 0 0 1 337 749095017 749094681 1.090000e-174 623
2 TraesCS2A01G533100 chr2A 94.118 119 5 2 2981 3098 278994878 278994995 2.850000e-41 180
3 TraesCS2A01G533100 chr2A 89.655 58 6 0 1096 1153 749438777 749438834 1.380000e-09 75
4 TraesCS2A01G533100 chr2D 93.901 2689 146 13 904 3587 618251559 618248884 0.000000e+00 4041
5 TraesCS2A01G533100 chr2D 94.118 119 7 0 2980 3098 404123429 404123311 7.910000e-42 182
6 TraesCS2A01G533100 chr2D 89.655 58 6 0 1096 1153 618397896 618397953 1.380000e-09 75
7 TraesCS2A01G533100 chr2B 89.517 1717 138 27 923 2630 754867719 754866036 0.000000e+00 2135
8 TraesCS2A01G533100 chr2B 85.360 403 36 11 3169 3562 754865334 754864946 2.600000e-106 396
9 TraesCS2A01G533100 chr2B 95.570 158 7 0 2615 2772 754865693 754865536 1.650000e-63 254
10 TraesCS2A01G533100 chr2B 88.172 186 18 2 2801 2986 754865537 754865356 6.030000e-53 219
11 TraesCS2A01G533100 chr2B 93.388 121 8 0 2984 3104 448908345 448908225 2.850000e-41 180
12 TraesCS2A01G533100 chr3B 97.321 112 3 0 2983 3094 214560269 214560158 1.310000e-44 191
13 TraesCS2A01G533100 chr7D 94.309 123 6 1 2977 3098 479651837 479651715 1.700000e-43 187
14 TraesCS2A01G533100 chr7D 93.966 116 7 0 2980 3095 64687044 64686929 3.680000e-40 176
15 TraesCS2A01G533100 chr4D 95.652 115 5 0 2988 3102 160742367 160742253 6.120000e-43 185
16 TraesCS2A01G533100 chr5B 94.167 120 6 1 2978 3097 380817579 380817461 7.910000e-42 182
17 TraesCS2A01G533100 chr3D 93.443 122 7 1 2989 3109 597483193 597483314 2.850000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G533100 chr2A 749091431 749095017 3586 True 2901.5 5180 100.00000 1 3587 2 chr2A.!!$R1 3586
1 TraesCS2A01G533100 chr2D 618248884 618251559 2675 True 4041.0 4041 93.90100 904 3587 1 chr2D.!!$R2 2683
2 TraesCS2A01G533100 chr2B 754864946 754867719 2773 True 751.0 2135 89.65475 923 3562 4 chr2B.!!$R2 2639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 228 0.035439 CCGGTACACAAGAAGCCCAT 60.035 55.0 0.0 0.0 0.00 4.00 F
233 234 0.038892 CACAAGAAGCCCATGCACAC 60.039 55.0 0.0 0.0 41.13 3.82 F
236 237 0.111061 AAGAAGCCCATGCACACTGA 59.889 50.0 0.0 0.0 41.13 3.41 F
237 238 0.111061 AGAAGCCCATGCACACTGAA 59.889 50.0 0.0 0.0 41.13 3.02 F
841 842 0.247974 CAGCGCTTACATCTTGCTGC 60.248 55.0 7.5 0.0 45.41 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1215 1216 1.742880 CTCCATGCACACAGGACCG 60.743 63.158 0.0 0.0 0.0 4.79 R
1600 1601 2.084546 GAGCAATTGTCCAGTACACCC 58.915 52.381 7.4 0.0 38.0 4.61 R
2149 2150 2.404923 GGAGACCCTGAGCCTTTAAC 57.595 55.000 0.0 0.0 0.0 2.01 R
2296 2300 7.827236 TGGACCGAAATTCACAGAATATTTACT 59.173 33.333 0.0 0.0 0.0 2.24 R
2748 3111 0.317479 AGGCAGTTGTCCGTGTCTAC 59.683 55.000 0.0 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.920828 TTGTGAGGTGGGGAAAGC 57.079 55.556 0.00 0.00 0.00 3.51
18 19 1.926657 TTGTGAGGTGGGGAAAGCA 59.073 52.632 0.00 0.00 0.00 3.91
19 20 0.260230 TTGTGAGGTGGGGAAAGCAA 59.740 50.000 0.00 0.00 0.00 3.91
20 21 0.260230 TGTGAGGTGGGGAAAGCAAA 59.740 50.000 0.00 0.00 0.00 3.68
21 22 1.133199 TGTGAGGTGGGGAAAGCAAAT 60.133 47.619 0.00 0.00 0.00 2.32
22 23 1.546029 GTGAGGTGGGGAAAGCAAATC 59.454 52.381 0.00 0.00 0.00 2.17
23 24 1.428912 TGAGGTGGGGAAAGCAAATCT 59.571 47.619 0.00 0.00 0.00 2.40
24 25 1.821136 GAGGTGGGGAAAGCAAATCTG 59.179 52.381 0.00 0.00 0.00 2.90
25 26 1.428912 AGGTGGGGAAAGCAAATCTGA 59.571 47.619 0.00 0.00 0.00 3.27
26 27 1.821136 GGTGGGGAAAGCAAATCTGAG 59.179 52.381 0.00 0.00 0.00 3.35
27 28 2.555227 GGTGGGGAAAGCAAATCTGAGA 60.555 50.000 0.00 0.00 0.00 3.27
28 29 3.157087 GTGGGGAAAGCAAATCTGAGAA 58.843 45.455 0.00 0.00 0.00 2.87
29 30 3.192212 GTGGGGAAAGCAAATCTGAGAAG 59.808 47.826 0.00 0.00 0.00 2.85
30 31 3.074390 TGGGGAAAGCAAATCTGAGAAGA 59.926 43.478 0.00 0.00 0.00 2.87
31 32 4.082125 GGGGAAAGCAAATCTGAGAAGAA 58.918 43.478 0.00 0.00 0.00 2.52
32 33 4.524328 GGGGAAAGCAAATCTGAGAAGAAA 59.476 41.667 0.00 0.00 0.00 2.52
33 34 5.011023 GGGGAAAGCAAATCTGAGAAGAAAA 59.989 40.000 0.00 0.00 0.00 2.29
34 35 6.295518 GGGGAAAGCAAATCTGAGAAGAAAAT 60.296 38.462 0.00 0.00 0.00 1.82
35 36 7.157347 GGGAAAGCAAATCTGAGAAGAAAATT 58.843 34.615 0.00 0.00 0.00 1.82
36 37 8.306761 GGGAAAGCAAATCTGAGAAGAAAATTA 58.693 33.333 0.00 0.00 0.00 1.40
37 38 9.133627 GGAAAGCAAATCTGAGAAGAAAATTAC 57.866 33.333 0.00 0.00 0.00 1.89
38 39 9.905171 GAAAGCAAATCTGAGAAGAAAATTACT 57.095 29.630 0.00 0.00 0.00 2.24
41 42 9.507329 AGCAAATCTGAGAAGAAAATTACTACA 57.493 29.630 0.00 0.00 0.00 2.74
46 47 8.689251 TCTGAGAAGAAAATTACTACATGACG 57.311 34.615 0.00 0.00 0.00 4.35
47 48 7.275779 TCTGAGAAGAAAATTACTACATGACGC 59.724 37.037 0.00 0.00 0.00 5.19
48 49 6.871492 TGAGAAGAAAATTACTACATGACGCA 59.129 34.615 0.00 0.00 0.00 5.24
49 50 7.063426 TGAGAAGAAAATTACTACATGACGCAG 59.937 37.037 0.00 0.00 0.00 5.18
50 51 5.470845 AGAAAATTACTACATGACGCAGC 57.529 39.130 0.00 0.00 0.00 5.25
51 52 4.935205 AGAAAATTACTACATGACGCAGCA 59.065 37.500 0.00 0.00 0.00 4.41
52 53 5.586243 AGAAAATTACTACATGACGCAGCAT 59.414 36.000 0.00 0.00 0.00 3.79
54 55 3.518634 TTACTACATGACGCAGCATGA 57.481 42.857 19.21 5.63 46.64 3.07
55 56 2.385013 ACTACATGACGCAGCATGAA 57.615 45.000 19.21 0.00 46.64 2.57
56 57 2.698803 ACTACATGACGCAGCATGAAA 58.301 42.857 19.21 8.40 46.64 2.69
57 58 2.416547 ACTACATGACGCAGCATGAAAC 59.583 45.455 19.21 0.00 46.64 2.78
58 59 1.527034 ACATGACGCAGCATGAAACT 58.473 45.000 19.21 0.00 46.64 2.66
59 60 2.698803 ACATGACGCAGCATGAAACTA 58.301 42.857 19.21 0.00 46.64 2.24
60 61 3.273434 ACATGACGCAGCATGAAACTAT 58.727 40.909 19.21 0.00 46.64 2.12
61 62 3.064408 ACATGACGCAGCATGAAACTATG 59.936 43.478 19.21 0.00 46.64 2.23
62 63 2.971307 TGACGCAGCATGAAACTATGA 58.029 42.857 0.00 0.00 39.69 2.15
63 64 3.534554 TGACGCAGCATGAAACTATGAT 58.465 40.909 0.00 0.00 39.69 2.45
64 65 3.310501 TGACGCAGCATGAAACTATGATG 59.689 43.478 0.00 0.00 44.86 3.07
65 66 3.273434 ACGCAGCATGAAACTATGATGT 58.727 40.909 0.00 0.00 44.15 3.06
66 67 3.310774 ACGCAGCATGAAACTATGATGTC 59.689 43.478 0.00 0.00 44.15 3.06
67 68 3.310501 CGCAGCATGAAACTATGATGTCA 59.689 43.478 0.00 0.00 44.15 3.58
68 69 4.595116 GCAGCATGAAACTATGATGTCAC 58.405 43.478 0.00 0.00 44.15 3.67
69 70 4.784394 GCAGCATGAAACTATGATGTCACG 60.784 45.833 0.00 0.00 44.15 4.35
70 71 4.567959 CAGCATGAAACTATGATGTCACGA 59.432 41.667 0.00 0.00 39.08 4.35
71 72 5.235831 CAGCATGAAACTATGATGTCACGAT 59.764 40.000 0.00 0.00 39.08 3.73
72 73 5.235831 AGCATGAAACTATGATGTCACGATG 59.764 40.000 0.00 0.00 0.00 3.84
73 74 5.234972 GCATGAAACTATGATGTCACGATGA 59.765 40.000 0.00 0.00 0.00 2.92
74 75 6.073385 GCATGAAACTATGATGTCACGATGAT 60.073 38.462 0.00 0.00 0.00 2.45
75 76 7.519488 GCATGAAACTATGATGTCACGATGATT 60.519 37.037 0.00 0.00 0.00 2.57
76 77 7.468922 TGAAACTATGATGTCACGATGATTC 57.531 36.000 0.00 0.00 0.00 2.52
77 78 7.041107 TGAAACTATGATGTCACGATGATTCA 58.959 34.615 0.00 0.00 0.00 2.57
78 79 7.548780 TGAAACTATGATGTCACGATGATTCAA 59.451 33.333 0.00 0.00 29.43 2.69
79 80 7.848223 AACTATGATGTCACGATGATTCAAA 57.152 32.000 0.00 0.00 29.43 2.69
80 81 8.442632 AACTATGATGTCACGATGATTCAAAT 57.557 30.769 0.00 0.00 29.43 2.32
81 82 9.546428 AACTATGATGTCACGATGATTCAAATA 57.454 29.630 0.00 0.00 29.43 1.40
82 83 9.716531 ACTATGATGTCACGATGATTCAAATAT 57.283 29.630 0.00 0.00 29.43 1.28
176 177 8.871686 TTTTTCCAGATTTTGTAAGAGCTTTC 57.128 30.769 0.00 0.00 0.00 2.62
177 178 7.581213 TTTCCAGATTTTGTAAGAGCTTTCA 57.419 32.000 0.00 0.00 0.00 2.69
178 179 7.581213 TTCCAGATTTTGTAAGAGCTTTCAA 57.419 32.000 0.00 0.00 0.00 2.69
179 180 7.581213 TCCAGATTTTGTAAGAGCTTTCAAA 57.419 32.000 9.88 9.88 37.82 2.69
180 181 7.651808 TCCAGATTTTGTAAGAGCTTTCAAAG 58.348 34.615 12.55 0.00 39.66 2.77
181 182 7.502226 TCCAGATTTTGTAAGAGCTTTCAAAGA 59.498 33.333 0.00 6.28 39.66 2.52
182 183 7.592903 CCAGATTTTGTAAGAGCTTTCAAAGAC 59.407 37.037 0.00 11.09 39.66 3.01
183 184 7.322222 CAGATTTTGTAAGAGCTTTCAAAGACG 59.678 37.037 0.00 0.00 39.66 4.18
184 185 6.431198 TTTTGTAAGAGCTTTCAAAGACGT 57.569 33.333 0.00 0.00 39.66 4.34
185 186 5.652744 TTGTAAGAGCTTTCAAAGACGTC 57.347 39.130 7.70 7.70 29.09 4.34
186 187 4.689071 TGTAAGAGCTTTCAAAGACGTCA 58.311 39.130 19.50 0.00 0.00 4.35
187 188 5.113383 TGTAAGAGCTTTCAAAGACGTCAA 58.887 37.500 19.50 0.00 0.00 3.18
188 189 4.537936 AAGAGCTTTCAAAGACGTCAAC 57.462 40.909 19.50 0.00 0.00 3.18
189 190 2.872858 AGAGCTTTCAAAGACGTCAACC 59.127 45.455 19.50 0.00 0.00 3.77
190 191 1.597663 AGCTTTCAAAGACGTCAACCG 59.402 47.619 19.50 3.08 44.03 4.44
191 192 1.333791 GCTTTCAAAGACGTCAACCGG 60.334 52.381 19.50 0.00 42.24 5.28
192 193 1.263217 CTTTCAAAGACGTCAACCGGG 59.737 52.381 19.50 0.00 42.24 5.73
193 194 0.464870 TTCAAAGACGTCAACCGGGA 59.535 50.000 19.50 3.40 42.24 5.14
194 195 0.682852 TCAAAGACGTCAACCGGGAT 59.317 50.000 19.50 0.00 42.24 3.85
195 196 1.076332 CAAAGACGTCAACCGGGATC 58.924 55.000 19.50 0.00 42.24 3.36
196 197 0.974383 AAAGACGTCAACCGGGATCT 59.026 50.000 19.50 0.00 42.24 2.75
197 198 0.246635 AAGACGTCAACCGGGATCTG 59.753 55.000 19.50 0.00 42.24 2.90
198 199 0.611062 AGACGTCAACCGGGATCTGA 60.611 55.000 19.50 0.00 42.24 3.27
199 200 0.460311 GACGTCAACCGGGATCTGAT 59.540 55.000 11.55 0.00 42.24 2.90
200 201 0.902531 ACGTCAACCGGGATCTGATT 59.097 50.000 6.32 0.00 42.24 2.57
201 202 1.290203 CGTCAACCGGGATCTGATTG 58.710 55.000 6.32 0.00 0.00 2.67
202 203 1.017387 GTCAACCGGGATCTGATTGC 58.983 55.000 6.32 0.00 0.00 3.56
203 204 0.461870 TCAACCGGGATCTGATTGCG 60.462 55.000 6.32 0.00 0.00 4.85
204 205 0.744414 CAACCGGGATCTGATTGCGT 60.744 55.000 6.32 0.00 0.00 5.24
205 206 0.744414 AACCGGGATCTGATTGCGTG 60.744 55.000 6.32 0.00 0.00 5.34
206 207 2.537560 CCGGGATCTGATTGCGTGC 61.538 63.158 0.00 0.00 0.00 5.34
207 208 1.815003 CGGGATCTGATTGCGTGCA 60.815 57.895 0.00 0.00 0.00 4.57
208 209 1.723870 GGGATCTGATTGCGTGCAC 59.276 57.895 6.82 6.82 0.00 4.57
209 210 1.718757 GGGATCTGATTGCGTGCACC 61.719 60.000 12.15 4.74 0.00 5.01
210 211 1.349627 GATCTGATTGCGTGCACCG 59.650 57.895 12.15 7.80 40.40 4.94
211 212 2.040213 GATCTGATTGCGTGCACCGG 62.040 60.000 12.15 0.00 36.94 5.28
212 213 2.803155 ATCTGATTGCGTGCACCGGT 62.803 55.000 12.15 0.00 36.94 5.28
213 214 1.739929 CTGATTGCGTGCACCGGTA 60.740 57.895 6.87 0.00 36.94 4.02
214 215 1.966493 CTGATTGCGTGCACCGGTAC 61.966 60.000 6.87 0.52 36.94 3.34
215 216 2.030401 GATTGCGTGCACCGGTACA 61.030 57.895 6.87 4.49 36.94 2.90
216 217 2.235536 GATTGCGTGCACCGGTACAC 62.236 60.000 25.44 25.44 36.94 2.90
217 218 2.997952 ATTGCGTGCACCGGTACACA 62.998 55.000 31.94 17.08 36.57 3.72
218 219 2.968156 GCGTGCACCGGTACACAA 60.968 61.111 31.94 4.40 36.57 3.33
219 220 2.950172 GCGTGCACCGGTACACAAG 61.950 63.158 31.94 20.21 36.57 3.16
220 221 1.300311 CGTGCACCGGTACACAAGA 60.300 57.895 31.94 0.00 36.57 3.02
221 222 0.876777 CGTGCACCGGTACACAAGAA 60.877 55.000 31.94 0.98 36.57 2.52
222 223 0.865769 GTGCACCGGTACACAAGAAG 59.134 55.000 29.26 5.75 36.77 2.85
223 224 0.882927 TGCACCGGTACACAAGAAGC 60.883 55.000 6.87 3.32 0.00 3.86
224 225 1.574702 GCACCGGTACACAAGAAGCC 61.575 60.000 6.87 0.00 0.00 4.35
225 226 0.953960 CACCGGTACACAAGAAGCCC 60.954 60.000 6.87 0.00 0.00 5.19
226 227 1.373435 CCGGTACACAAGAAGCCCA 59.627 57.895 0.00 0.00 0.00 5.36
227 228 0.035439 CCGGTACACAAGAAGCCCAT 60.035 55.000 0.00 0.00 0.00 4.00
228 229 1.086696 CGGTACACAAGAAGCCCATG 58.913 55.000 0.00 0.00 0.00 3.66
229 230 0.811281 GGTACACAAGAAGCCCATGC 59.189 55.000 0.00 0.00 37.95 4.06
230 231 1.533625 GTACACAAGAAGCCCATGCA 58.466 50.000 0.00 0.00 41.13 3.96
231 232 1.200020 GTACACAAGAAGCCCATGCAC 59.800 52.381 0.00 0.00 41.13 4.57
232 233 0.467844 ACACAAGAAGCCCATGCACA 60.468 50.000 0.00 0.00 41.13 4.57
233 234 0.038892 CACAAGAAGCCCATGCACAC 60.039 55.000 0.00 0.00 41.13 3.82
234 235 0.178981 ACAAGAAGCCCATGCACACT 60.179 50.000 0.00 0.00 41.13 3.55
235 236 0.242825 CAAGAAGCCCATGCACACTG 59.757 55.000 0.00 0.00 41.13 3.66
236 237 0.111061 AAGAAGCCCATGCACACTGA 59.889 50.000 0.00 0.00 41.13 3.41
237 238 0.111061 AGAAGCCCATGCACACTGAA 59.889 50.000 0.00 0.00 41.13 3.02
238 239 0.524862 GAAGCCCATGCACACTGAAG 59.475 55.000 0.00 0.00 41.13 3.02
239 240 1.530013 AAGCCCATGCACACTGAAGC 61.530 55.000 0.00 0.00 41.13 3.86
240 241 2.270257 GCCCATGCACACTGAAGCA 61.270 57.895 0.00 3.95 45.92 3.91
245 246 3.238232 TGCACACTGAAGCATCTCC 57.762 52.632 0.00 0.00 35.51 3.71
246 247 0.397564 TGCACACTGAAGCATCTCCA 59.602 50.000 0.00 0.00 35.51 3.86
247 248 1.003928 TGCACACTGAAGCATCTCCAT 59.996 47.619 0.00 0.00 35.51 3.41
248 249 2.236893 TGCACACTGAAGCATCTCCATA 59.763 45.455 0.00 0.00 35.51 2.74
249 250 3.273434 GCACACTGAAGCATCTCCATAA 58.727 45.455 0.00 0.00 0.00 1.90
250 251 3.064545 GCACACTGAAGCATCTCCATAAC 59.935 47.826 0.00 0.00 0.00 1.89
251 252 4.511527 CACACTGAAGCATCTCCATAACT 58.488 43.478 0.00 0.00 0.00 2.24
252 253 5.664457 CACACTGAAGCATCTCCATAACTA 58.336 41.667 0.00 0.00 0.00 2.24
253 254 5.752472 CACACTGAAGCATCTCCATAACTAG 59.248 44.000 0.00 0.00 0.00 2.57
254 255 5.658634 ACACTGAAGCATCTCCATAACTAGA 59.341 40.000 0.00 0.00 0.00 2.43
255 256 6.155221 ACACTGAAGCATCTCCATAACTAGAA 59.845 38.462 0.00 0.00 0.00 2.10
256 257 7.147585 ACACTGAAGCATCTCCATAACTAGAAT 60.148 37.037 0.00 0.00 0.00 2.40
257 258 7.714377 CACTGAAGCATCTCCATAACTAGAATT 59.286 37.037 0.00 0.00 0.00 2.17
258 259 7.930865 ACTGAAGCATCTCCATAACTAGAATTC 59.069 37.037 0.00 0.00 0.00 2.17
259 260 8.027524 TGAAGCATCTCCATAACTAGAATTCT 57.972 34.615 13.56 13.56 0.00 2.40
260 261 8.147058 TGAAGCATCTCCATAACTAGAATTCTC 58.853 37.037 12.24 0.00 0.00 2.87
261 262 7.003402 AGCATCTCCATAACTAGAATTCTCC 57.997 40.000 12.24 0.00 0.00 3.71
262 263 5.866633 GCATCTCCATAACTAGAATTCTCCG 59.133 44.000 12.24 7.17 0.00 4.63
263 264 6.517529 GCATCTCCATAACTAGAATTCTCCGT 60.518 42.308 12.24 7.84 0.00 4.69
264 265 6.636562 TCTCCATAACTAGAATTCTCCGTC 57.363 41.667 12.24 0.00 0.00 4.79
265 266 5.535406 TCTCCATAACTAGAATTCTCCGTCC 59.465 44.000 12.24 0.00 0.00 4.79
266 267 4.587684 TCCATAACTAGAATTCTCCGTCCC 59.412 45.833 12.24 0.00 0.00 4.46
267 268 4.547532 CATAACTAGAATTCTCCGTCCCG 58.452 47.826 12.24 0.00 0.00 5.14
268 269 2.140839 ACTAGAATTCTCCGTCCCGT 57.859 50.000 12.24 0.00 0.00 5.28
269 270 2.454538 ACTAGAATTCTCCGTCCCGTT 58.545 47.619 12.24 0.00 0.00 4.44
270 271 3.624777 ACTAGAATTCTCCGTCCCGTTA 58.375 45.455 12.24 0.00 0.00 3.18
271 272 4.213513 ACTAGAATTCTCCGTCCCGTTAT 58.786 43.478 12.24 0.00 0.00 1.89
272 273 5.380043 ACTAGAATTCTCCGTCCCGTTATA 58.620 41.667 12.24 0.00 0.00 0.98
273 274 5.829924 ACTAGAATTCTCCGTCCCGTTATAA 59.170 40.000 12.24 0.00 0.00 0.98
274 275 4.941657 AGAATTCTCCGTCCCGTTATAAC 58.058 43.478 0.88 5.47 0.00 1.89
275 276 4.403432 AGAATTCTCCGTCCCGTTATAACA 59.597 41.667 15.67 0.00 0.00 2.41
276 277 4.950205 ATTCTCCGTCCCGTTATAACAT 57.050 40.909 15.67 0.00 0.00 2.71
277 278 6.266103 AGAATTCTCCGTCCCGTTATAACATA 59.734 38.462 15.67 0.00 0.00 2.29
278 279 4.836125 TCTCCGTCCCGTTATAACATAC 57.164 45.455 15.67 8.70 0.00 2.39
279 280 3.250762 TCTCCGTCCCGTTATAACATACG 59.749 47.826 19.55 19.55 37.50 3.06
280 281 2.948979 TCCGTCCCGTTATAACATACGT 59.051 45.455 22.34 0.00 36.09 3.57
281 282 3.044986 CCGTCCCGTTATAACATACGTG 58.955 50.000 22.34 14.86 36.09 4.49
282 283 3.489059 CCGTCCCGTTATAACATACGTGT 60.489 47.826 22.34 0.00 41.28 4.49
284 285 4.204978 CGTCCCGTTATAACATACGTGTTC 59.795 45.833 15.67 0.00 45.14 3.18
285 286 5.343249 GTCCCGTTATAACATACGTGTTCT 58.657 41.667 15.67 0.00 45.14 3.01
286 287 5.807011 GTCCCGTTATAACATACGTGTTCTT 59.193 40.000 15.67 0.00 45.14 2.52
287 288 6.020360 GTCCCGTTATAACATACGTGTTCTTC 60.020 42.308 15.67 0.00 45.14 2.87
288 289 5.806502 CCCGTTATAACATACGTGTTCTTCA 59.193 40.000 15.67 0.00 45.14 3.02
289 290 6.310956 CCCGTTATAACATACGTGTTCTTCAA 59.689 38.462 15.67 0.00 45.14 2.69
290 291 7.010738 CCCGTTATAACATACGTGTTCTTCAAT 59.989 37.037 15.67 0.00 45.14 2.57
291 292 8.054236 CCGTTATAACATACGTGTTCTTCAATC 58.946 37.037 15.67 0.00 45.14 2.67
292 293 8.804743 CGTTATAACATACGTGTTCTTCAATCT 58.195 33.333 15.67 0.00 45.14 2.40
297 298 8.873215 AACATACGTGTTCTTCAATCTATAGG 57.127 34.615 0.00 0.00 45.14 2.57
298 299 7.434492 ACATACGTGTTCTTCAATCTATAGGG 58.566 38.462 0.00 0.00 34.01 3.53
299 300 5.934402 ACGTGTTCTTCAATCTATAGGGT 57.066 39.130 0.00 0.00 0.00 4.34
300 301 6.295719 ACGTGTTCTTCAATCTATAGGGTT 57.704 37.500 0.00 0.00 0.00 4.11
301 302 6.338937 ACGTGTTCTTCAATCTATAGGGTTC 58.661 40.000 0.00 0.00 0.00 3.62
302 303 6.070995 ACGTGTTCTTCAATCTATAGGGTTCA 60.071 38.462 0.00 0.00 0.00 3.18
303 304 6.986817 CGTGTTCTTCAATCTATAGGGTTCAT 59.013 38.462 0.00 0.00 0.00 2.57
304 305 7.495934 CGTGTTCTTCAATCTATAGGGTTCATT 59.504 37.037 0.00 0.00 0.00 2.57
305 306 9.178758 GTGTTCTTCAATCTATAGGGTTCATTT 57.821 33.333 0.00 0.00 0.00 2.32
306 307 9.753674 TGTTCTTCAATCTATAGGGTTCATTTT 57.246 29.630 0.00 0.00 0.00 1.82
319 320 7.703058 AGGGTTCATTTTAATACTTCCAGTG 57.297 36.000 0.00 0.00 0.00 3.66
320 321 6.152831 AGGGTTCATTTTAATACTTCCAGTGC 59.847 38.462 0.00 0.00 0.00 4.40
321 322 6.152831 GGGTTCATTTTAATACTTCCAGTGCT 59.847 38.462 0.00 0.00 0.00 4.40
322 323 7.338449 GGGTTCATTTTAATACTTCCAGTGCTA 59.662 37.037 0.00 0.00 0.00 3.49
323 324 8.182227 GGTTCATTTTAATACTTCCAGTGCTAC 58.818 37.037 0.00 0.00 0.00 3.58
324 325 8.947115 GTTCATTTTAATACTTCCAGTGCTACT 58.053 33.333 0.00 0.00 0.00 2.57
326 327 9.817809 TCATTTTAATACTTCCAGTGCTACTAG 57.182 33.333 0.00 0.00 0.00 2.57
327 328 8.552034 CATTTTAATACTTCCAGTGCTACTAGC 58.448 37.037 0.61 0.61 42.82 3.42
807 808 7.830739 ACAATCTCACTAATTGAATGTTTCCC 58.169 34.615 3.06 0.00 37.51 3.97
808 809 7.671398 ACAATCTCACTAATTGAATGTTTCCCT 59.329 33.333 3.06 0.00 37.51 4.20
809 810 9.177608 CAATCTCACTAATTGAATGTTTCCCTA 57.822 33.333 0.00 0.00 36.43 3.53
810 811 8.970859 ATCTCACTAATTGAATGTTTCCCTAG 57.029 34.615 0.00 0.00 32.21 3.02
811 812 8.146053 TCTCACTAATTGAATGTTTCCCTAGA 57.854 34.615 0.00 0.00 32.21 2.43
812 813 8.602424 TCTCACTAATTGAATGTTTCCCTAGAA 58.398 33.333 0.00 0.00 32.21 2.10
813 814 9.231297 CTCACTAATTGAATGTTTCCCTAGAAA 57.769 33.333 0.00 0.00 35.06 2.52
826 827 5.769484 TCCCTAGAAACTAATCTACAGCG 57.231 43.478 0.00 0.00 0.00 5.18
827 828 4.037684 TCCCTAGAAACTAATCTACAGCGC 59.962 45.833 0.00 0.00 0.00 5.92
828 829 4.038162 CCCTAGAAACTAATCTACAGCGCT 59.962 45.833 2.64 2.64 0.00 5.92
829 830 5.452077 CCCTAGAAACTAATCTACAGCGCTT 60.452 44.000 7.50 1.63 0.00 4.68
830 831 6.238953 CCCTAGAAACTAATCTACAGCGCTTA 60.239 42.308 7.50 2.93 0.00 3.09
831 832 6.637658 CCTAGAAACTAATCTACAGCGCTTAC 59.362 42.308 7.50 0.00 0.00 2.34
832 833 5.962433 AGAAACTAATCTACAGCGCTTACA 58.038 37.500 7.50 0.00 0.00 2.41
833 834 6.574350 AGAAACTAATCTACAGCGCTTACAT 58.426 36.000 7.50 0.00 0.00 2.29
834 835 6.697892 AGAAACTAATCTACAGCGCTTACATC 59.302 38.462 7.50 0.00 0.00 3.06
835 836 5.776173 ACTAATCTACAGCGCTTACATCT 57.224 39.130 7.50 0.00 0.00 2.90
836 837 6.150396 ACTAATCTACAGCGCTTACATCTT 57.850 37.500 7.50 0.00 0.00 2.40
837 838 5.980116 ACTAATCTACAGCGCTTACATCTTG 59.020 40.000 7.50 0.00 0.00 3.02
838 839 2.540515 TCTACAGCGCTTACATCTTGC 58.459 47.619 7.50 0.00 0.00 4.01
839 840 2.166459 TCTACAGCGCTTACATCTTGCT 59.834 45.455 7.50 0.00 36.05 3.91
840 841 3.891786 CAGCGCTTACATCTTGCTG 57.108 52.632 7.50 0.00 45.88 4.41
841 842 0.247974 CAGCGCTTACATCTTGCTGC 60.248 55.000 7.50 0.00 45.41 5.25
842 843 0.392193 AGCGCTTACATCTTGCTGCT 60.392 50.000 2.64 0.00 33.99 4.24
843 844 0.247974 GCGCTTACATCTTGCTGCTG 60.248 55.000 0.00 0.00 0.00 4.41
844 845 1.362768 CGCTTACATCTTGCTGCTGA 58.637 50.000 0.00 0.00 0.00 4.26
845 846 1.938577 CGCTTACATCTTGCTGCTGAT 59.061 47.619 0.00 2.04 0.00 2.90
846 847 3.126073 CGCTTACATCTTGCTGCTGATA 58.874 45.455 0.00 0.00 0.00 2.15
847 848 3.557185 CGCTTACATCTTGCTGCTGATAA 59.443 43.478 0.00 0.00 0.00 1.75
848 849 4.034394 CGCTTACATCTTGCTGCTGATAAA 59.966 41.667 0.00 3.01 0.00 1.40
849 850 5.447683 CGCTTACATCTTGCTGCTGATAAAA 60.448 40.000 0.00 2.71 0.00 1.52
850 851 5.741040 GCTTACATCTTGCTGCTGATAAAAC 59.259 40.000 0.00 0.00 0.00 2.43
851 852 6.404074 GCTTACATCTTGCTGCTGATAAAACT 60.404 38.462 0.00 0.00 0.00 2.66
852 853 7.201644 GCTTACATCTTGCTGCTGATAAAACTA 60.202 37.037 0.00 0.00 0.00 2.24
853 854 6.428385 ACATCTTGCTGCTGATAAAACTAC 57.572 37.500 0.00 0.00 0.00 2.73
854 855 5.063944 ACATCTTGCTGCTGATAAAACTACG 59.936 40.000 0.00 0.00 0.00 3.51
855 856 3.370978 TCTTGCTGCTGATAAAACTACGC 59.629 43.478 0.00 0.00 0.00 4.42
856 857 2.972625 TGCTGCTGATAAAACTACGCT 58.027 42.857 0.00 0.00 0.00 5.07
857 858 4.118093 TGCTGCTGATAAAACTACGCTA 57.882 40.909 0.00 0.00 0.00 4.26
858 859 4.693283 TGCTGCTGATAAAACTACGCTAT 58.307 39.130 0.00 0.00 0.00 2.97
859 860 4.507756 TGCTGCTGATAAAACTACGCTATG 59.492 41.667 0.00 0.00 0.00 2.23
860 861 4.084328 GCTGCTGATAAAACTACGCTATGG 60.084 45.833 0.00 0.00 0.00 2.74
861 862 5.270893 TGCTGATAAAACTACGCTATGGA 57.729 39.130 0.00 0.00 0.00 3.41
862 863 5.666462 TGCTGATAAAACTACGCTATGGAA 58.334 37.500 0.00 0.00 0.00 3.53
863 864 5.753438 TGCTGATAAAACTACGCTATGGAAG 59.247 40.000 0.00 0.00 0.00 3.46
864 865 5.983720 GCTGATAAAACTACGCTATGGAAGA 59.016 40.000 0.00 0.00 0.00 2.87
865 866 6.647067 GCTGATAAAACTACGCTATGGAAGAT 59.353 38.462 0.00 0.00 0.00 2.40
866 867 7.148722 GCTGATAAAACTACGCTATGGAAGATC 60.149 40.741 0.00 0.00 0.00 2.75
867 868 7.722363 TGATAAAACTACGCTATGGAAGATCA 58.278 34.615 0.00 0.00 0.00 2.92
868 869 8.367911 TGATAAAACTACGCTATGGAAGATCAT 58.632 33.333 0.00 0.00 0.00 2.45
869 870 8.764524 ATAAAACTACGCTATGGAAGATCATC 57.235 34.615 0.00 0.00 0.00 2.92
870 871 4.427096 ACTACGCTATGGAAGATCATCG 57.573 45.455 0.00 0.00 0.00 3.84
871 872 2.732412 ACGCTATGGAAGATCATCGG 57.268 50.000 0.00 0.00 0.00 4.18
872 873 2.239400 ACGCTATGGAAGATCATCGGA 58.761 47.619 0.00 0.00 0.00 4.55
873 874 2.029828 ACGCTATGGAAGATCATCGGAC 60.030 50.000 0.00 0.00 0.00 4.79
874 875 2.029918 CGCTATGGAAGATCATCGGACA 60.030 50.000 0.00 0.00 0.00 4.02
875 876 3.552890 CGCTATGGAAGATCATCGGACAA 60.553 47.826 0.00 0.00 0.00 3.18
876 877 4.573900 GCTATGGAAGATCATCGGACAAT 58.426 43.478 0.00 0.00 0.00 2.71
877 878 5.622233 CGCTATGGAAGATCATCGGACAATA 60.622 44.000 0.00 0.00 0.00 1.90
878 879 6.166279 GCTATGGAAGATCATCGGACAATAA 58.834 40.000 0.00 0.00 0.00 1.40
879 880 6.820656 GCTATGGAAGATCATCGGACAATAAT 59.179 38.462 0.00 0.00 0.00 1.28
880 881 7.335422 GCTATGGAAGATCATCGGACAATAATT 59.665 37.037 0.00 0.00 0.00 1.40
881 882 7.678947 ATGGAAGATCATCGGACAATAATTC 57.321 36.000 0.00 0.00 0.00 2.17
882 883 6.591001 TGGAAGATCATCGGACAATAATTCA 58.409 36.000 0.00 0.00 0.00 2.57
883 884 6.707608 TGGAAGATCATCGGACAATAATTCAG 59.292 38.462 0.00 0.00 0.00 3.02
884 885 6.348050 GGAAGATCATCGGACAATAATTCAGC 60.348 42.308 0.00 0.00 0.00 4.26
885 886 5.614308 AGATCATCGGACAATAATTCAGCA 58.386 37.500 0.00 0.00 0.00 4.41
886 887 6.057533 AGATCATCGGACAATAATTCAGCAA 58.942 36.000 0.00 0.00 0.00 3.91
887 888 6.543465 AGATCATCGGACAATAATTCAGCAAA 59.457 34.615 0.00 0.00 0.00 3.68
888 889 6.507958 TCATCGGACAATAATTCAGCAAAA 57.492 33.333 0.00 0.00 0.00 2.44
889 890 7.099266 TCATCGGACAATAATTCAGCAAAAT 57.901 32.000 0.00 0.00 0.00 1.82
890 891 7.546358 TCATCGGACAATAATTCAGCAAAATT 58.454 30.769 2.44 2.44 33.54 1.82
891 892 8.034215 TCATCGGACAATAATTCAGCAAAATTT 58.966 29.630 2.19 0.00 31.50 1.82
892 893 7.579589 TCGGACAATAATTCAGCAAAATTTG 57.420 32.000 0.57 0.57 31.50 2.32
893 894 7.374272 TCGGACAATAATTCAGCAAAATTTGA 58.626 30.769 10.26 0.00 31.50 2.69
894 895 7.541783 TCGGACAATAATTCAGCAAAATTTGAG 59.458 33.333 10.26 1.17 31.50 3.02
895 896 7.541783 CGGACAATAATTCAGCAAAATTTGAGA 59.458 33.333 10.26 3.66 31.50 3.27
896 897 9.206870 GGACAATAATTCAGCAAAATTTGAGAA 57.793 29.630 10.26 12.26 33.11 2.87
921 922 7.921786 AAAAATATGGAAGATCGTCAGACAA 57.078 32.000 10.88 0.00 0.00 3.18
946 947 9.941325 AATAATTCAGCAAAATTTGGTCATGTA 57.059 25.926 7.52 0.00 39.79 2.29
949 950 4.277174 TCAGCAAAATTTGGTCATGTACGT 59.723 37.500 7.52 0.00 39.79 3.57
967 968 3.323243 ACGTGTTATGCAGGTTGTACTC 58.677 45.455 0.00 0.00 42.82 2.59
985 986 3.660865 ACTCGAATTGACCGCTTAGTTT 58.339 40.909 0.00 0.00 0.00 2.66
995 996 0.321653 CGCTTAGTTTCCCTGCAGGT 60.322 55.000 30.63 14.84 36.75 4.00
1037 1038 2.762745 TGACTTCCGCCAAGTTCTTAC 58.237 47.619 0.06 0.00 46.10 2.34
1041 1042 3.181458 ACTTCCGCCAAGTTCTTACTTCA 60.181 43.478 0.00 0.00 43.38 3.02
1077 1078 2.266279 CCCCCTAACAGTCTCCAAGAA 58.734 52.381 0.00 0.00 0.00 2.52
1153 1154 2.026449 CCCAACTTGGAAGATCTCAGCT 60.026 50.000 9.61 0.00 40.96 4.24
1158 1159 3.837146 ACTTGGAAGATCTCAGCTTCTCA 59.163 43.478 0.00 0.00 41.11 3.27
1215 1216 6.287589 AGTTATGGTACTGGATATAGCAGC 57.712 41.667 0.00 0.00 33.80 5.25
1269 1270 2.005451 CTGATTGACCCTGAAGCTTCG 58.995 52.381 21.11 15.09 0.00 3.79
1274 1275 2.735151 TGACCCTGAAGCTTCGATCTA 58.265 47.619 21.11 2.62 0.00 1.98
1275 1276 3.300388 TGACCCTGAAGCTTCGATCTAT 58.700 45.455 21.11 4.84 0.00 1.98
1302 1303 6.430962 AAGGAGATTGCTGAGCTTATGATA 57.569 37.500 5.83 0.00 0.00 2.15
1424 1425 0.395586 AGCCACAACAACCAAGCAGA 60.396 50.000 0.00 0.00 0.00 4.26
1600 1601 1.108727 TTTTGCCAGAGCCACCACAG 61.109 55.000 0.00 0.00 38.69 3.66
1683 1684 5.707298 CCAGCAATATCATAAAGTACCCCTG 59.293 44.000 0.00 0.00 0.00 4.45
1738 1739 6.374333 GCTTCAACCAAGTATAAATGTCCTCA 59.626 38.462 0.00 0.00 34.13 3.86
1780 1781 1.630369 TGATTAGTGAGCAGGCCAGTT 59.370 47.619 5.01 0.00 0.00 3.16
1788 1789 2.946947 GCAGGCCAGTTTGCTTCTA 58.053 52.632 5.01 0.00 37.35 2.10
2002 2003 2.286502 AGGGGAAGGGGAAGGAGC 60.287 66.667 0.00 0.00 0.00 4.70
2264 2268 1.137675 CCTTCGAGCATCATGGACTGA 59.862 52.381 0.00 0.00 38.53 3.41
2296 2300 1.686587 AGTTGAGTGATCACGGTGTGA 59.313 47.619 19.85 1.65 46.90 3.58
2297 2301 2.061773 GTTGAGTGATCACGGTGTGAG 58.938 52.381 19.85 0.00 46.04 3.51
2327 2331 2.939103 CTGTGAATTTCGGTCCAGGATC 59.061 50.000 0.00 0.00 0.00 3.36
2335 2339 1.028905 CGGTCCAGGATCTGTCTCTC 58.971 60.000 0.00 0.00 0.00 3.20
2483 2487 3.226346 TCTTAACGCTTATCGCACACT 57.774 42.857 0.00 0.00 43.23 3.55
2498 2502 4.020928 TCGCACACTTTTAGGAAGGTATGA 60.021 41.667 0.00 0.00 0.00 2.15
2504 2508 5.352569 CACTTTTAGGAAGGTATGACTGCTG 59.647 44.000 0.00 0.00 0.00 4.41
2511 2515 1.195115 GGTATGACTGCTGTCTGGGA 58.805 55.000 22.31 4.78 43.29 4.37
2746 3109 9.628500 ATTGATCAATGATTCAGATTTCAGAGA 57.372 29.630 20.11 0.00 0.00 3.10
2748 3111 9.110502 TGATCAATGATTCAGATTTCAGAGAAG 57.889 33.333 0.00 0.00 0.00 2.85
2782 3145 1.555075 CTGCCTATACTGGTGTGGTGT 59.445 52.381 0.00 0.00 0.00 4.16
2794 3159 3.008485 TGGTGTGGTGTCTACATATTGCA 59.992 43.478 0.00 0.00 0.00 4.08
2796 3161 3.374058 GTGTGGTGTCTACATATTGCACC 59.626 47.826 5.19 5.19 46.97 5.01
2799 3164 2.864343 GGTGTCTACATATTGCACCGAC 59.136 50.000 0.00 0.00 39.90 4.79
2800 3165 3.517602 GTGTCTACATATTGCACCGACA 58.482 45.455 0.00 0.00 0.00 4.35
2834 3199 7.497579 AGGATCAAAATTTTGTTGTACAAACCC 59.502 33.333 25.98 14.38 46.53 4.11
2877 3242 2.423577 AGCCGAACTTGCGAATAAAGT 58.576 42.857 0.00 0.00 39.55 2.66
2986 3351 7.825331 TCCTGAGTTCAGATAGGTTACATAG 57.175 40.000 10.64 0.00 46.59 2.23
2994 3359 7.403837 TCAGATAGGTTACATAGTACTCCCT 57.596 40.000 0.00 0.00 0.00 4.20
2997 3362 3.830121 AGGTTACATAGTACTCCCTCCG 58.170 50.000 0.00 0.00 0.00 4.63
2998 3363 3.203934 AGGTTACATAGTACTCCCTCCGT 59.796 47.826 0.00 0.00 0.00 4.69
3001 3366 2.295885 ACATAGTACTCCCTCCGTTCG 58.704 52.381 0.00 0.00 0.00 3.95
3002 3367 1.607628 CATAGTACTCCCTCCGTTCGG 59.392 57.143 0.00 4.74 0.00 4.30
3005 3370 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
3006 3371 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
3007 3372 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3008 3373 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3009 3374 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3010 3375 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3011 3376 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3012 3377 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3013 3378 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3014 3379 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
3015 3380 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
3016 3381 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
3019 3384 4.529446 GTTCGGAATTACTTGTCGCAAAA 58.471 39.130 0.00 0.00 0.00 2.44
3020 3385 4.815040 TCGGAATTACTTGTCGCAAAAA 57.185 36.364 0.00 0.00 0.00 1.94
3022 3387 5.150683 TCGGAATTACTTGTCGCAAAAATG 58.849 37.500 0.00 0.00 0.00 2.32
3024 3389 5.465935 GGAATTACTTGTCGCAAAAATGGA 58.534 37.500 0.00 0.00 0.00 3.41
3025 3390 6.099341 GGAATTACTTGTCGCAAAAATGGAT 58.901 36.000 0.00 0.00 0.00 3.41
3026 3391 6.034898 GGAATTACTTGTCGCAAAAATGGATG 59.965 38.462 0.00 0.00 0.00 3.51
3029 3394 5.643379 ACTTGTCGCAAAAATGGATGTAT 57.357 34.783 0.00 0.00 0.00 2.29
3032 3397 6.597672 ACTTGTCGCAAAAATGGATGTATCTA 59.402 34.615 0.00 0.00 0.00 1.98
3033 3398 6.603237 TGTCGCAAAAATGGATGTATCTAG 57.397 37.500 0.00 0.00 0.00 2.43
3034 3399 6.345298 TGTCGCAAAAATGGATGTATCTAGA 58.655 36.000 0.00 0.00 0.00 2.43
3035 3400 6.257849 TGTCGCAAAAATGGATGTATCTAGAC 59.742 38.462 0.00 0.00 0.00 2.59
3036 3401 5.462068 TCGCAAAAATGGATGTATCTAGACG 59.538 40.000 0.00 0.00 0.00 4.18
3037 3402 5.234329 CGCAAAAATGGATGTATCTAGACGT 59.766 40.000 0.00 0.00 0.00 4.34
3038 3403 6.419710 CGCAAAAATGGATGTATCTAGACGTA 59.580 38.462 0.00 0.00 0.00 3.57
3039 3404 7.116376 CGCAAAAATGGATGTATCTAGACGTAT 59.884 37.037 0.00 0.00 0.00 3.06
3040 3405 8.774586 GCAAAAATGGATGTATCTAGACGTATT 58.225 33.333 0.00 0.00 0.00 1.89
3068 3433 8.324191 AGTTCTAGATACATCCATTTCCAAGA 57.676 34.615 0.00 0.00 0.00 3.02
3069 3434 8.207545 AGTTCTAGATACATCCATTTCCAAGAC 58.792 37.037 0.00 0.00 0.00 3.01
3070 3435 7.675161 TCTAGATACATCCATTTCCAAGACA 57.325 36.000 0.00 0.00 0.00 3.41
3071 3436 8.089625 TCTAGATACATCCATTTCCAAGACAA 57.910 34.615 0.00 0.00 0.00 3.18
3072 3437 8.206867 TCTAGATACATCCATTTCCAAGACAAG 58.793 37.037 0.00 0.00 0.00 3.16
3073 3438 6.725364 AGATACATCCATTTCCAAGACAAGT 58.275 36.000 0.00 0.00 0.00 3.16
3074 3439 7.861629 AGATACATCCATTTCCAAGACAAGTA 58.138 34.615 0.00 0.00 0.00 2.24
3075 3440 8.328758 AGATACATCCATTTCCAAGACAAGTAA 58.671 33.333 0.00 0.00 0.00 2.24
3076 3441 9.125026 GATACATCCATTTCCAAGACAAGTAAT 57.875 33.333 0.00 0.00 0.00 1.89
3077 3442 7.781324 ACATCCATTTCCAAGACAAGTAATT 57.219 32.000 0.00 0.00 0.00 1.40
3078 3443 7.830739 ACATCCATTTCCAAGACAAGTAATTC 58.169 34.615 0.00 0.00 0.00 2.17
3079 3444 6.834168 TCCATTTCCAAGACAAGTAATTCC 57.166 37.500 0.00 0.00 0.00 3.01
3085 3450 3.581755 CAAGACAAGTAATTCCGGACGA 58.418 45.455 1.83 0.00 0.00 4.20
3140 3505 5.991606 CCTTCACTGTTCTGTTATCAACTCA 59.008 40.000 0.00 0.00 0.00 3.41
3178 3543 3.519579 CCACTTTGTTGCACATTTGACA 58.480 40.909 0.00 0.00 0.00 3.58
3344 3715 6.094048 CCAAACATCACAGTTTATCCTACAGG 59.906 42.308 0.00 0.00 39.55 4.00
3485 3856 5.245531 AGATTCATACCGAAAACAGAAGCA 58.754 37.500 0.00 0.00 37.12 3.91
3495 3866 5.446473 CCGAAAACAGAAGCACTAGCAATAG 60.446 44.000 0.00 0.00 45.49 1.73
3558 3932 4.516698 ACAGTCACATTGAAACACCATCTC 59.483 41.667 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.260230 TTGCTTTCCCCACCTCACAA 59.740 50.000 0.00 0.00 0.00 3.33
1 2 0.260230 TTTGCTTTCCCCACCTCACA 59.740 50.000 0.00 0.00 0.00 3.58
2 3 1.546029 GATTTGCTTTCCCCACCTCAC 59.454 52.381 0.00 0.00 0.00 3.51
3 4 1.428912 AGATTTGCTTTCCCCACCTCA 59.571 47.619 0.00 0.00 0.00 3.86
4 5 1.821136 CAGATTTGCTTTCCCCACCTC 59.179 52.381 0.00 0.00 0.00 3.85
5 6 1.428912 TCAGATTTGCTTTCCCCACCT 59.571 47.619 0.00 0.00 0.00 4.00
6 7 1.821136 CTCAGATTTGCTTTCCCCACC 59.179 52.381 0.00 0.00 0.00 4.61
7 8 2.795329 TCTCAGATTTGCTTTCCCCAC 58.205 47.619 0.00 0.00 0.00 4.61
8 9 3.074390 TCTTCTCAGATTTGCTTTCCCCA 59.926 43.478 0.00 0.00 0.00 4.96
9 10 3.690460 TCTTCTCAGATTTGCTTTCCCC 58.310 45.455 0.00 0.00 0.00 4.81
10 11 5.712152 TTTCTTCTCAGATTTGCTTTCCC 57.288 39.130 0.00 0.00 0.00 3.97
11 12 9.133627 GTAATTTTCTTCTCAGATTTGCTTTCC 57.866 33.333 0.00 0.00 0.00 3.13
12 13 9.905171 AGTAATTTTCTTCTCAGATTTGCTTTC 57.095 29.630 0.00 0.00 0.00 2.62
15 16 9.507329 TGTAGTAATTTTCTTCTCAGATTTGCT 57.493 29.630 0.00 0.00 0.00 3.91
20 21 9.307121 CGTCATGTAGTAATTTTCTTCTCAGAT 57.693 33.333 0.00 0.00 0.00 2.90
21 22 7.275779 GCGTCATGTAGTAATTTTCTTCTCAGA 59.724 37.037 0.00 0.00 0.00 3.27
22 23 7.063426 TGCGTCATGTAGTAATTTTCTTCTCAG 59.937 37.037 0.00 0.00 0.00 3.35
23 24 6.871492 TGCGTCATGTAGTAATTTTCTTCTCA 59.129 34.615 0.00 0.00 0.00 3.27
24 25 7.290857 TGCGTCATGTAGTAATTTTCTTCTC 57.709 36.000 0.00 0.00 0.00 2.87
25 26 6.183360 GCTGCGTCATGTAGTAATTTTCTTCT 60.183 38.462 0.00 0.00 32.10 2.85
26 27 5.960105 GCTGCGTCATGTAGTAATTTTCTTC 59.040 40.000 0.00 0.00 32.10 2.87
27 28 5.411361 TGCTGCGTCATGTAGTAATTTTCTT 59.589 36.000 0.00 0.00 32.10 2.52
28 29 4.935205 TGCTGCGTCATGTAGTAATTTTCT 59.065 37.500 0.00 0.00 32.10 2.52
29 30 5.216566 TGCTGCGTCATGTAGTAATTTTC 57.783 39.130 0.00 0.00 32.10 2.29
30 31 5.353956 TCATGCTGCGTCATGTAGTAATTTT 59.646 36.000 14.93 0.00 43.18 1.82
31 32 4.875536 TCATGCTGCGTCATGTAGTAATTT 59.124 37.500 14.93 0.00 43.18 1.82
32 33 4.441792 TCATGCTGCGTCATGTAGTAATT 58.558 39.130 14.93 0.00 43.18 1.40
33 34 4.058721 TCATGCTGCGTCATGTAGTAAT 57.941 40.909 14.93 0.00 43.18 1.89
34 35 3.518634 TCATGCTGCGTCATGTAGTAA 57.481 42.857 14.93 0.00 43.18 2.24
35 36 3.518634 TTCATGCTGCGTCATGTAGTA 57.481 42.857 14.93 0.00 43.18 1.82
36 37 2.385013 TTCATGCTGCGTCATGTAGT 57.615 45.000 14.93 0.00 43.18 2.73
37 38 2.674852 AGTTTCATGCTGCGTCATGTAG 59.325 45.455 14.93 0.00 43.18 2.74
38 39 2.698803 AGTTTCATGCTGCGTCATGTA 58.301 42.857 14.93 5.78 43.18 2.29
39 40 1.527034 AGTTTCATGCTGCGTCATGT 58.473 45.000 14.93 0.00 43.18 3.21
40 41 3.310501 TCATAGTTTCATGCTGCGTCATG 59.689 43.478 10.67 10.67 43.84 3.07
41 42 3.534554 TCATAGTTTCATGCTGCGTCAT 58.465 40.909 0.00 0.00 0.00 3.06
42 43 2.971307 TCATAGTTTCATGCTGCGTCA 58.029 42.857 0.00 0.00 0.00 4.35
43 44 3.310774 ACATCATAGTTTCATGCTGCGTC 59.689 43.478 0.00 0.00 0.00 5.19
44 45 3.273434 ACATCATAGTTTCATGCTGCGT 58.727 40.909 0.00 0.00 0.00 5.24
45 46 3.310501 TGACATCATAGTTTCATGCTGCG 59.689 43.478 0.00 0.00 0.00 5.18
46 47 4.595116 GTGACATCATAGTTTCATGCTGC 58.405 43.478 0.00 0.00 0.00 5.25
47 48 4.567959 TCGTGACATCATAGTTTCATGCTG 59.432 41.667 0.00 0.00 0.00 4.41
48 49 4.758688 TCGTGACATCATAGTTTCATGCT 58.241 39.130 0.00 0.00 0.00 3.79
49 50 5.234972 TCATCGTGACATCATAGTTTCATGC 59.765 40.000 0.00 0.00 0.00 4.06
50 51 6.833342 TCATCGTGACATCATAGTTTCATG 57.167 37.500 0.00 0.00 0.00 3.07
51 52 7.712205 TGAATCATCGTGACATCATAGTTTCAT 59.288 33.333 0.00 0.00 0.00 2.57
52 53 7.041107 TGAATCATCGTGACATCATAGTTTCA 58.959 34.615 0.00 0.00 0.00 2.69
53 54 7.468922 TGAATCATCGTGACATCATAGTTTC 57.531 36.000 0.00 0.00 0.00 2.78
54 55 7.848223 TTGAATCATCGTGACATCATAGTTT 57.152 32.000 0.00 0.00 29.39 2.66
55 56 7.848223 TTTGAATCATCGTGACATCATAGTT 57.152 32.000 0.00 0.00 29.39 2.24
56 57 9.716531 ATATTTGAATCATCGTGACATCATAGT 57.283 29.630 0.00 0.00 29.39 2.12
151 152 8.474025 TGAAAGCTCTTACAAAATCTGGAAAAA 58.526 29.630 0.00 0.00 0.00 1.94
152 153 8.006298 TGAAAGCTCTTACAAAATCTGGAAAA 57.994 30.769 0.00 0.00 0.00 2.29
153 154 7.581213 TGAAAGCTCTTACAAAATCTGGAAA 57.419 32.000 0.00 0.00 0.00 3.13
154 155 7.581213 TTGAAAGCTCTTACAAAATCTGGAA 57.419 32.000 0.00 0.00 0.00 3.53
155 156 7.502226 TCTTTGAAAGCTCTTACAAAATCTGGA 59.498 33.333 0.00 0.00 33.05 3.86
156 157 7.592903 GTCTTTGAAAGCTCTTACAAAATCTGG 59.407 37.037 0.00 0.00 33.05 3.86
157 158 7.322222 CGTCTTTGAAAGCTCTTACAAAATCTG 59.678 37.037 0.00 0.00 33.05 2.90
158 159 7.012421 ACGTCTTTGAAAGCTCTTACAAAATCT 59.988 33.333 0.00 0.00 33.05 2.40
159 160 7.132863 ACGTCTTTGAAAGCTCTTACAAAATC 58.867 34.615 0.00 0.00 33.05 2.17
160 161 7.027778 ACGTCTTTGAAAGCTCTTACAAAAT 57.972 32.000 0.00 0.00 33.05 1.82
161 162 6.092944 TGACGTCTTTGAAAGCTCTTACAAAA 59.907 34.615 17.92 0.00 33.05 2.44
162 163 5.583061 TGACGTCTTTGAAAGCTCTTACAAA 59.417 36.000 17.92 0.00 0.00 2.83
163 164 5.113383 TGACGTCTTTGAAAGCTCTTACAA 58.887 37.500 17.92 0.00 0.00 2.41
164 165 4.689071 TGACGTCTTTGAAAGCTCTTACA 58.311 39.130 17.92 0.00 0.00 2.41
165 166 5.433005 GTTGACGTCTTTGAAAGCTCTTAC 58.567 41.667 17.92 0.00 0.00 2.34
166 167 4.510340 GGTTGACGTCTTTGAAAGCTCTTA 59.490 41.667 17.92 0.00 0.00 2.10
167 168 3.312697 GGTTGACGTCTTTGAAAGCTCTT 59.687 43.478 17.92 0.00 0.00 2.85
168 169 2.872858 GGTTGACGTCTTTGAAAGCTCT 59.127 45.455 17.92 0.00 0.00 4.09
169 170 2.348591 CGGTTGACGTCTTTGAAAGCTC 60.349 50.000 17.92 0.00 37.93 4.09
170 171 1.597663 CGGTTGACGTCTTTGAAAGCT 59.402 47.619 17.92 0.00 37.93 3.74
171 172 1.333791 CCGGTTGACGTCTTTGAAAGC 60.334 52.381 17.92 10.58 42.24 3.51
172 173 1.263217 CCCGGTTGACGTCTTTGAAAG 59.737 52.381 17.92 0.00 42.24 2.62
173 174 1.134461 TCCCGGTTGACGTCTTTGAAA 60.134 47.619 17.92 0.00 42.24 2.69
174 175 0.464870 TCCCGGTTGACGTCTTTGAA 59.535 50.000 17.92 0.00 42.24 2.69
175 176 0.682852 ATCCCGGTTGACGTCTTTGA 59.317 50.000 17.92 5.30 42.24 2.69
176 177 1.076332 GATCCCGGTTGACGTCTTTG 58.924 55.000 17.92 4.00 42.24 2.77
177 178 0.974383 AGATCCCGGTTGACGTCTTT 59.026 50.000 17.92 0.00 42.24 2.52
178 179 0.246635 CAGATCCCGGTTGACGTCTT 59.753 55.000 17.92 0.00 42.24 3.01
179 180 0.611062 TCAGATCCCGGTTGACGTCT 60.611 55.000 17.92 0.00 42.24 4.18
180 181 0.460311 ATCAGATCCCGGTTGACGTC 59.540 55.000 9.11 9.11 42.24 4.34
181 182 0.902531 AATCAGATCCCGGTTGACGT 59.097 50.000 0.00 0.00 42.24 4.34
182 183 1.290203 CAATCAGATCCCGGTTGACG 58.710 55.000 0.00 0.00 43.80 4.35
183 184 1.017387 GCAATCAGATCCCGGTTGAC 58.983 55.000 9.38 0.00 0.00 3.18
184 185 0.461870 CGCAATCAGATCCCGGTTGA 60.462 55.000 9.38 0.00 0.00 3.18
185 186 0.744414 ACGCAATCAGATCCCGGTTG 60.744 55.000 0.00 0.00 0.00 3.77
186 187 0.744414 CACGCAATCAGATCCCGGTT 60.744 55.000 0.00 0.00 0.00 4.44
187 188 1.153369 CACGCAATCAGATCCCGGT 60.153 57.895 0.00 0.00 0.00 5.28
188 189 2.537560 GCACGCAATCAGATCCCGG 61.538 63.158 0.00 0.00 0.00 5.73
189 190 1.815003 TGCACGCAATCAGATCCCG 60.815 57.895 0.00 2.11 0.00 5.14
190 191 1.718757 GGTGCACGCAATCAGATCCC 61.719 60.000 11.45 0.00 0.00 3.85
191 192 1.723870 GGTGCACGCAATCAGATCC 59.276 57.895 11.45 0.00 0.00 3.36
192 193 1.349627 CGGTGCACGCAATCAGATC 59.650 57.895 11.45 0.00 34.82 2.75
193 194 2.108514 CCGGTGCACGCAATCAGAT 61.109 57.895 11.45 0.00 42.52 2.90
194 195 2.161078 TACCGGTGCACGCAATCAGA 62.161 55.000 19.93 0.00 42.52 3.27
195 196 1.739929 TACCGGTGCACGCAATCAG 60.740 57.895 19.93 0.00 42.52 2.90
196 197 2.030401 GTACCGGTGCACGCAATCA 61.030 57.895 19.93 0.00 42.52 2.57
197 198 2.030401 TGTACCGGTGCACGCAATC 61.030 57.895 22.40 2.00 42.52 2.67
198 199 2.031314 TGTACCGGTGCACGCAAT 59.969 55.556 22.40 0.00 42.52 3.56
199 200 2.968156 GTGTACCGGTGCACGCAA 60.968 61.111 34.89 7.84 42.52 4.85
200 201 3.735037 TTGTGTACCGGTGCACGCA 62.735 57.895 38.83 29.13 46.93 5.24
201 202 2.950172 CTTGTGTACCGGTGCACGC 61.950 63.158 38.83 27.15 46.93 5.34
202 203 0.876777 TTCTTGTGTACCGGTGCACG 60.877 55.000 38.83 29.35 46.93 5.34
203 204 0.865769 CTTCTTGTGTACCGGTGCAC 59.134 55.000 39.12 39.12 44.73 4.57
204 205 0.882927 GCTTCTTGTGTACCGGTGCA 60.883 55.000 22.40 22.40 0.00 4.57
205 206 1.574702 GGCTTCTTGTGTACCGGTGC 61.575 60.000 19.93 18.21 0.00 5.01
206 207 0.953960 GGGCTTCTTGTGTACCGGTG 60.954 60.000 19.93 0.00 0.00 4.94
207 208 1.373812 GGGCTTCTTGTGTACCGGT 59.626 57.895 13.98 13.98 0.00 5.28
208 209 0.035439 ATGGGCTTCTTGTGTACCGG 60.035 55.000 0.00 0.00 0.00 5.28
209 210 1.086696 CATGGGCTTCTTGTGTACCG 58.913 55.000 0.00 0.00 0.00 4.02
210 211 0.811281 GCATGGGCTTCTTGTGTACC 59.189 55.000 0.00 0.00 36.96 3.34
211 212 1.200020 GTGCATGGGCTTCTTGTGTAC 59.800 52.381 0.00 0.00 41.91 2.90
212 213 1.202867 TGTGCATGGGCTTCTTGTGTA 60.203 47.619 0.00 0.00 41.91 2.90
213 214 0.467844 TGTGCATGGGCTTCTTGTGT 60.468 50.000 0.00 0.00 41.91 3.72
214 215 0.038892 GTGTGCATGGGCTTCTTGTG 60.039 55.000 0.00 0.00 41.91 3.33
215 216 0.178981 AGTGTGCATGGGCTTCTTGT 60.179 50.000 0.00 0.00 41.91 3.16
216 217 0.242825 CAGTGTGCATGGGCTTCTTG 59.757 55.000 0.00 0.00 41.91 3.02
217 218 0.111061 TCAGTGTGCATGGGCTTCTT 59.889 50.000 0.00 0.00 41.91 2.52
218 219 0.111061 TTCAGTGTGCATGGGCTTCT 59.889 50.000 0.00 0.00 41.91 2.85
219 220 0.524862 CTTCAGTGTGCATGGGCTTC 59.475 55.000 0.00 0.00 41.91 3.86
220 221 1.530013 GCTTCAGTGTGCATGGGCTT 61.530 55.000 0.00 0.00 41.91 4.35
221 222 1.975407 GCTTCAGTGTGCATGGGCT 60.975 57.895 0.00 0.00 41.91 5.19
222 223 1.601419 ATGCTTCAGTGTGCATGGGC 61.601 55.000 19.74 0.00 46.58 5.36
223 224 2.575108 ATGCTTCAGTGTGCATGGG 58.425 52.632 19.74 0.00 46.58 4.00
227 228 0.397564 TGGAGATGCTTCAGTGTGCA 59.602 50.000 13.86 13.86 43.67 4.57
228 229 1.747709 ATGGAGATGCTTCAGTGTGC 58.252 50.000 2.07 4.40 0.00 4.57
229 230 4.511527 AGTTATGGAGATGCTTCAGTGTG 58.488 43.478 2.07 0.00 0.00 3.82
230 231 4.833478 AGTTATGGAGATGCTTCAGTGT 57.167 40.909 2.07 0.00 0.00 3.55
231 232 6.154203 TCTAGTTATGGAGATGCTTCAGTG 57.846 41.667 2.07 0.00 0.00 3.66
232 233 6.798427 TTCTAGTTATGGAGATGCTTCAGT 57.202 37.500 2.07 0.00 0.00 3.41
233 234 8.149647 AGAATTCTAGTTATGGAGATGCTTCAG 58.850 37.037 6.06 0.00 0.00 3.02
234 235 8.027524 AGAATTCTAGTTATGGAGATGCTTCA 57.972 34.615 6.06 0.00 0.00 3.02
235 236 7.602265 GGAGAATTCTAGTTATGGAGATGCTTC 59.398 40.741 8.25 0.00 0.00 3.86
236 237 7.449247 GGAGAATTCTAGTTATGGAGATGCTT 58.551 38.462 8.25 0.00 0.00 3.91
237 238 6.295011 CGGAGAATTCTAGTTATGGAGATGCT 60.295 42.308 8.25 0.00 0.00 3.79
238 239 5.866633 CGGAGAATTCTAGTTATGGAGATGC 59.133 44.000 8.25 0.00 0.00 3.91
239 240 6.987386 ACGGAGAATTCTAGTTATGGAGATG 58.013 40.000 8.25 0.00 0.00 2.90
240 241 6.209788 GGACGGAGAATTCTAGTTATGGAGAT 59.790 42.308 8.25 0.00 0.00 2.75
241 242 5.535406 GGACGGAGAATTCTAGTTATGGAGA 59.465 44.000 8.25 0.00 0.00 3.71
242 243 5.279056 GGGACGGAGAATTCTAGTTATGGAG 60.279 48.000 8.25 0.00 0.00 3.86
243 244 4.587684 GGGACGGAGAATTCTAGTTATGGA 59.412 45.833 8.25 0.00 0.00 3.41
244 245 4.884247 GGGACGGAGAATTCTAGTTATGG 58.116 47.826 8.25 0.00 0.00 2.74
273 274 7.069578 ACCCTATAGATTGAAGAACACGTATGT 59.930 37.037 0.00 0.00 42.46 2.29
274 275 7.434492 ACCCTATAGATTGAAGAACACGTATG 58.566 38.462 0.00 0.00 0.00 2.39
275 276 7.598759 ACCCTATAGATTGAAGAACACGTAT 57.401 36.000 0.00 0.00 0.00 3.06
276 277 7.123098 TGAACCCTATAGATTGAAGAACACGTA 59.877 37.037 0.00 0.00 0.00 3.57
277 278 5.934402 ACCCTATAGATTGAAGAACACGT 57.066 39.130 0.00 0.00 0.00 4.49
278 279 6.338146 TGAACCCTATAGATTGAAGAACACG 58.662 40.000 0.00 0.00 0.00 4.49
279 280 8.738645 AATGAACCCTATAGATTGAAGAACAC 57.261 34.615 0.00 0.00 0.00 3.32
280 281 9.753674 AAAATGAACCCTATAGATTGAAGAACA 57.246 29.630 0.00 0.00 0.00 3.18
782 783 7.671398 AGGGAAACATTCAATTAGTGAGATTGT 59.329 33.333 0.00 0.00 37.61 2.71
783 784 8.059798 AGGGAAACATTCAATTAGTGAGATTG 57.940 34.615 0.00 0.00 37.61 2.67
784 785 9.401058 CTAGGGAAACATTCAATTAGTGAGATT 57.599 33.333 0.00 0.00 37.61 2.40
785 786 8.772250 TCTAGGGAAACATTCAATTAGTGAGAT 58.228 33.333 0.00 0.00 37.61 2.75
786 787 8.146053 TCTAGGGAAACATTCAATTAGTGAGA 57.854 34.615 0.00 0.00 37.61 3.27
787 788 8.792830 TTCTAGGGAAACATTCAATTAGTGAG 57.207 34.615 0.00 0.00 37.61 3.51
802 803 6.570692 CGCTGTAGATTAGTTTCTAGGGAAA 58.429 40.000 0.00 0.00 38.90 3.13
803 804 5.451520 GCGCTGTAGATTAGTTTCTAGGGAA 60.452 44.000 0.00 0.00 0.00 3.97
804 805 4.037684 GCGCTGTAGATTAGTTTCTAGGGA 59.962 45.833 0.00 0.00 0.00 4.20
805 806 4.038162 AGCGCTGTAGATTAGTTTCTAGGG 59.962 45.833 10.39 0.00 0.00 3.53
806 807 5.189659 AGCGCTGTAGATTAGTTTCTAGG 57.810 43.478 10.39 0.00 0.00 3.02
807 808 7.194278 TGTAAGCGCTGTAGATTAGTTTCTAG 58.806 38.462 12.58 0.00 0.00 2.43
808 809 7.092137 TGTAAGCGCTGTAGATTAGTTTCTA 57.908 36.000 12.58 0.00 0.00 2.10
809 810 5.962433 TGTAAGCGCTGTAGATTAGTTTCT 58.038 37.500 12.58 0.00 0.00 2.52
810 811 6.697892 AGATGTAAGCGCTGTAGATTAGTTTC 59.302 38.462 12.58 0.00 0.00 2.78
811 812 6.574350 AGATGTAAGCGCTGTAGATTAGTTT 58.426 36.000 12.58 0.00 0.00 2.66
812 813 6.150396 AGATGTAAGCGCTGTAGATTAGTT 57.850 37.500 12.58 0.00 0.00 2.24
813 814 5.776173 AGATGTAAGCGCTGTAGATTAGT 57.224 39.130 12.58 0.00 0.00 2.24
814 815 5.107683 GCAAGATGTAAGCGCTGTAGATTAG 60.108 44.000 12.58 0.00 0.00 1.73
815 816 4.745125 GCAAGATGTAAGCGCTGTAGATTA 59.255 41.667 12.58 0.00 0.00 1.75
816 817 3.557595 GCAAGATGTAAGCGCTGTAGATT 59.442 43.478 12.58 0.00 0.00 2.40
817 818 3.126831 GCAAGATGTAAGCGCTGTAGAT 58.873 45.455 12.58 9.74 0.00 1.98
818 819 2.166459 AGCAAGATGTAAGCGCTGTAGA 59.834 45.455 12.58 4.73 0.00 2.59
819 820 2.283617 CAGCAAGATGTAAGCGCTGTAG 59.716 50.000 12.58 0.00 43.94 2.74
820 821 2.270923 CAGCAAGATGTAAGCGCTGTA 58.729 47.619 12.58 2.55 43.94 2.74
821 822 1.081892 CAGCAAGATGTAAGCGCTGT 58.918 50.000 12.58 3.70 43.94 4.40
822 823 3.891786 CAGCAAGATGTAAGCGCTG 57.108 52.632 12.58 0.00 43.55 5.18
823 824 0.392193 AGCAGCAAGATGTAAGCGCT 60.392 50.000 2.64 2.64 34.87 5.92
824 825 0.247974 CAGCAGCAAGATGTAAGCGC 60.248 55.000 0.00 0.00 0.00 5.92
825 826 1.362768 TCAGCAGCAAGATGTAAGCG 58.637 50.000 0.00 0.00 34.56 4.68
826 827 5.490139 TTTATCAGCAGCAAGATGTAAGC 57.510 39.130 9.89 0.00 34.56 3.09
827 828 7.081526 AGTTTTATCAGCAGCAAGATGTAAG 57.918 36.000 9.89 0.00 34.56 2.34
828 829 7.201522 CGTAGTTTTATCAGCAGCAAGATGTAA 60.202 37.037 9.89 3.12 34.56 2.41
829 830 6.255670 CGTAGTTTTATCAGCAGCAAGATGTA 59.744 38.462 9.89 0.00 34.56 2.29
830 831 5.063944 CGTAGTTTTATCAGCAGCAAGATGT 59.936 40.000 9.89 0.00 34.56 3.06
831 832 5.496387 CGTAGTTTTATCAGCAGCAAGATG 58.504 41.667 9.89 0.00 34.12 2.90
832 833 4.034510 GCGTAGTTTTATCAGCAGCAAGAT 59.965 41.667 0.00 0.00 0.00 2.40
833 834 3.370978 GCGTAGTTTTATCAGCAGCAAGA 59.629 43.478 0.00 0.00 0.00 3.02
834 835 3.372206 AGCGTAGTTTTATCAGCAGCAAG 59.628 43.478 0.00 0.00 0.00 4.01
835 836 3.334691 AGCGTAGTTTTATCAGCAGCAA 58.665 40.909 0.00 0.00 0.00 3.91
836 837 2.972625 AGCGTAGTTTTATCAGCAGCA 58.027 42.857 0.00 0.00 0.00 4.41
837 838 4.084328 CCATAGCGTAGTTTTATCAGCAGC 60.084 45.833 0.00 0.00 0.00 5.25
838 839 5.289595 TCCATAGCGTAGTTTTATCAGCAG 58.710 41.667 0.00 0.00 0.00 4.24
839 840 5.270893 TCCATAGCGTAGTTTTATCAGCA 57.729 39.130 0.00 0.00 0.00 4.41
840 841 5.983720 TCTTCCATAGCGTAGTTTTATCAGC 59.016 40.000 0.00 0.00 0.00 4.26
841 842 7.867909 TGATCTTCCATAGCGTAGTTTTATCAG 59.132 37.037 0.00 0.00 0.00 2.90
842 843 7.722363 TGATCTTCCATAGCGTAGTTTTATCA 58.278 34.615 0.00 0.00 0.00 2.15
843 844 8.764524 ATGATCTTCCATAGCGTAGTTTTATC 57.235 34.615 0.00 0.00 0.00 1.75
844 845 7.542477 CGATGATCTTCCATAGCGTAGTTTTAT 59.458 37.037 3.19 0.00 0.00 1.40
845 846 6.861572 CGATGATCTTCCATAGCGTAGTTTTA 59.138 38.462 3.19 0.00 0.00 1.52
846 847 5.692204 CGATGATCTTCCATAGCGTAGTTTT 59.308 40.000 3.19 0.00 0.00 2.43
847 848 5.223382 CGATGATCTTCCATAGCGTAGTTT 58.777 41.667 3.19 0.00 0.00 2.66
848 849 4.321304 CCGATGATCTTCCATAGCGTAGTT 60.321 45.833 3.19 0.00 0.00 2.24
849 850 3.191581 CCGATGATCTTCCATAGCGTAGT 59.808 47.826 3.19 0.00 0.00 2.73
850 851 3.440522 TCCGATGATCTTCCATAGCGTAG 59.559 47.826 3.19 0.00 0.00 3.51
851 852 3.190744 GTCCGATGATCTTCCATAGCGTA 59.809 47.826 3.19 0.00 0.00 4.42
852 853 2.029828 GTCCGATGATCTTCCATAGCGT 60.030 50.000 3.19 0.00 0.00 5.07
853 854 2.029918 TGTCCGATGATCTTCCATAGCG 60.030 50.000 3.19 0.00 0.00 4.26
854 855 3.667497 TGTCCGATGATCTTCCATAGC 57.333 47.619 3.19 0.00 0.00 2.97
855 856 8.783833 AATTATTGTCCGATGATCTTCCATAG 57.216 34.615 3.19 0.00 0.00 2.23
856 857 8.374743 TGAATTATTGTCCGATGATCTTCCATA 58.625 33.333 3.19 0.00 0.00 2.74
857 858 7.226441 TGAATTATTGTCCGATGATCTTCCAT 58.774 34.615 3.19 0.00 0.00 3.41
858 859 6.591001 TGAATTATTGTCCGATGATCTTCCA 58.409 36.000 3.19 0.00 0.00 3.53
859 860 6.348050 GCTGAATTATTGTCCGATGATCTTCC 60.348 42.308 3.19 0.00 0.00 3.46
860 861 6.203530 TGCTGAATTATTGTCCGATGATCTTC 59.796 38.462 0.00 0.00 0.00 2.87
861 862 6.057533 TGCTGAATTATTGTCCGATGATCTT 58.942 36.000 0.00 0.00 0.00 2.40
862 863 5.614308 TGCTGAATTATTGTCCGATGATCT 58.386 37.500 0.00 0.00 0.00 2.75
863 864 5.929697 TGCTGAATTATTGTCCGATGATC 57.070 39.130 0.00 0.00 0.00 2.92
864 865 6.698008 TTTGCTGAATTATTGTCCGATGAT 57.302 33.333 0.00 0.00 0.00 2.45
865 866 6.507958 TTTTGCTGAATTATTGTCCGATGA 57.492 33.333 0.00 0.00 0.00 2.92
866 867 7.760131 AATTTTGCTGAATTATTGTCCGATG 57.240 32.000 0.00 0.00 0.00 3.84
867 868 8.034215 TCAAATTTTGCTGAATTATTGTCCGAT 58.966 29.630 4.19 0.00 0.00 4.18
868 869 7.374272 TCAAATTTTGCTGAATTATTGTCCGA 58.626 30.769 4.19 0.00 0.00 4.55
869 870 7.541783 TCTCAAATTTTGCTGAATTATTGTCCG 59.458 33.333 4.19 0.00 0.00 4.79
870 871 8.761575 TCTCAAATTTTGCTGAATTATTGTCC 57.238 30.769 4.19 0.00 0.00 4.02
897 898 7.921786 TTGTCTGACGATCTTCCATATTTTT 57.078 32.000 2.98 0.00 0.00 1.94
898 899 9.613428 TTATTGTCTGACGATCTTCCATATTTT 57.387 29.630 13.69 0.00 0.00 1.82
899 900 9.784531 ATTATTGTCTGACGATCTTCCATATTT 57.215 29.630 13.69 0.00 0.00 1.40
900 901 9.784531 AATTATTGTCTGACGATCTTCCATATT 57.215 29.630 13.69 2.64 0.00 1.28
901 902 9.429359 GAATTATTGTCTGACGATCTTCCATAT 57.571 33.333 13.69 0.00 0.00 1.78
902 903 8.421002 TGAATTATTGTCTGACGATCTTCCATA 58.579 33.333 13.69 2.12 0.00 2.74
913 914 8.437742 CCAAATTTTGCTGAATTATTGTCTGAC 58.562 33.333 3.50 0.00 0.00 3.51
920 921 8.851541 ACATGACCAAATTTTGCTGAATTATT 57.148 26.923 0.00 0.00 0.00 1.40
921 922 9.369904 GTACATGACCAAATTTTGCTGAATTAT 57.630 29.630 0.00 0.00 0.00 1.28
946 947 3.323243 GAGTACAACCTGCATAACACGT 58.677 45.455 0.00 0.00 0.00 4.49
949 950 3.945981 TCGAGTACAACCTGCATAACA 57.054 42.857 0.00 0.00 0.00 2.41
967 968 2.095372 GGGAAACTAAGCGGTCAATTCG 59.905 50.000 0.00 0.00 0.00 3.34
995 996 1.271871 CCTCAAGGTGTACCATGGCAA 60.272 52.381 13.04 0.00 35.56 4.52
1017 1018 2.367567 AGTAAGAACTTGGCGGAAGTCA 59.632 45.455 0.58 0.00 44.68 3.41
1037 1038 5.010282 GGGGGTATAAATATGTGCCTGAAG 58.990 45.833 0.00 0.00 0.00 3.02
1064 1065 2.369860 TGCAGTGATTCTTGGAGACTGT 59.630 45.455 0.00 0.00 37.07 3.55
1153 1154 5.634118 AGGACTTGTGGAAAATGATGAGAA 58.366 37.500 0.00 0.00 0.00 2.87
1215 1216 1.742880 CTCCATGCACACAGGACCG 60.743 63.158 0.00 0.00 0.00 4.79
1269 1270 6.813152 GCTCAGCAATCTCCTTTAGATAGATC 59.187 42.308 0.00 0.00 44.56 2.75
1275 1276 4.833478 AAGCTCAGCAATCTCCTTTAGA 57.167 40.909 0.00 0.00 39.02 2.10
1302 1303 2.993264 GGTGCATGGCCAGCAAGT 60.993 61.111 25.17 0.44 44.64 3.16
1434 1435 2.106131 ATGCTGCATGCGCCATTG 59.894 55.556 24.60 0.60 46.63 2.82
1600 1601 2.084546 GAGCAATTGTCCAGTACACCC 58.915 52.381 7.40 0.00 38.00 4.61
1683 1684 3.465742 TCCTCATGCATCTGTAGAAGC 57.534 47.619 0.00 2.38 39.04 3.86
1788 1789 2.578021 TGCTTCTTCCCCAAGCTTATCT 59.422 45.455 0.00 0.00 45.59 1.98
2002 2003 5.537188 ACTCTTAGTTCTCTTTGTGCTCTG 58.463 41.667 0.00 0.00 0.00 3.35
2149 2150 2.404923 GGAGACCCTGAGCCTTTAAC 57.595 55.000 0.00 0.00 0.00 2.01
2296 2300 7.827236 TGGACCGAAATTCACAGAATATTTACT 59.173 33.333 0.00 0.00 0.00 2.24
2297 2301 7.981142 TGGACCGAAATTCACAGAATATTTAC 58.019 34.615 0.00 0.00 0.00 2.01
2335 2339 6.627243 TCTTCATGCTTTTTCTCATCCATTG 58.373 36.000 0.00 0.00 0.00 2.82
2483 2487 5.488341 GACAGCAGTCATACCTTCCTAAAA 58.512 41.667 4.10 0.00 44.34 1.52
2530 2534 5.916661 ATGTCGTCAGGAGTGTACTTTAT 57.083 39.130 0.00 0.00 0.00 1.40
2746 3109 1.270147 GGCAGTTGTCCGTGTCTACTT 60.270 52.381 0.00 0.00 0.00 2.24
2748 3111 0.317479 AGGCAGTTGTCCGTGTCTAC 59.683 55.000 0.00 0.00 0.00 2.59
2782 3145 3.878160 TGTGTCGGTGCAATATGTAGA 57.122 42.857 0.00 0.00 0.00 2.59
2794 3159 2.110578 TGATCCTCATGATGTGTCGGT 58.889 47.619 0.00 0.00 32.41 4.69
2796 3161 5.746307 ATTTTGATCCTCATGATGTGTCG 57.254 39.130 0.00 0.00 32.41 4.35
2799 3164 8.440059 CAACAAAATTTTGATCCTCATGATGTG 58.560 33.333 32.20 5.95 40.55 3.21
2800 3165 8.152246 ACAACAAAATTTTGATCCTCATGATGT 58.848 29.630 32.20 17.51 40.55 3.06
2828 3193 5.229423 CCAATATCAACACAACAGGGTTTG 58.771 41.667 0.00 0.00 0.00 2.93
2834 3199 4.517952 TTGGCCAATATCAACACAACAG 57.482 40.909 16.05 0.00 0.00 3.16
2865 3230 7.497595 AGATATGTGGAGTACTTTATTCGCAA 58.502 34.615 0.00 0.00 0.00 4.85
2877 3242 5.636123 GAGAAGGGAGAGATATGTGGAGTA 58.364 45.833 0.00 0.00 0.00 2.59
2986 3351 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
2994 3359 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
2997 3362 3.799137 TTGCGACAAGTAATTCCGAAC 57.201 42.857 0.00 0.00 0.00 3.95
2998 3363 4.815040 TTTTGCGACAAGTAATTCCGAA 57.185 36.364 0.00 0.00 0.00 4.30
3001 3366 5.465935 TCCATTTTTGCGACAAGTAATTCC 58.534 37.500 0.00 0.00 0.00 3.01
3002 3367 6.586082 ACATCCATTTTTGCGACAAGTAATTC 59.414 34.615 0.00 0.00 0.00 2.17
3005 3370 5.446143 ACATCCATTTTTGCGACAAGTAA 57.554 34.783 0.00 0.00 0.00 2.24
3006 3371 6.597672 AGATACATCCATTTTTGCGACAAGTA 59.402 34.615 0.00 0.00 0.00 2.24
3007 3372 5.415701 AGATACATCCATTTTTGCGACAAGT 59.584 36.000 0.00 0.00 0.00 3.16
3008 3373 5.883661 AGATACATCCATTTTTGCGACAAG 58.116 37.500 0.00 0.00 0.00 3.16
3009 3374 5.895636 AGATACATCCATTTTTGCGACAA 57.104 34.783 0.00 0.00 0.00 3.18
3010 3375 6.257849 GTCTAGATACATCCATTTTTGCGACA 59.742 38.462 0.00 0.00 0.00 4.35
3011 3376 6.562270 CGTCTAGATACATCCATTTTTGCGAC 60.562 42.308 0.00 0.00 0.00 5.19
3012 3377 5.462068 CGTCTAGATACATCCATTTTTGCGA 59.538 40.000 0.00 0.00 0.00 5.10
3013 3378 5.234329 ACGTCTAGATACATCCATTTTTGCG 59.766 40.000 0.00 0.00 0.00 4.85
3014 3379 6.604735 ACGTCTAGATACATCCATTTTTGC 57.395 37.500 0.00 0.00 0.00 3.68
3042 3407 9.434275 TCTTGGAAATGGATGTATCTAGAACTA 57.566 33.333 0.00 0.00 0.00 2.24
3043 3408 8.207545 GTCTTGGAAATGGATGTATCTAGAACT 58.792 37.037 0.00 0.00 0.00 3.01
3044 3409 7.987458 TGTCTTGGAAATGGATGTATCTAGAAC 59.013 37.037 0.00 0.00 0.00 3.01
3045 3410 8.089625 TGTCTTGGAAATGGATGTATCTAGAA 57.910 34.615 0.00 0.00 0.00 2.10
3046 3411 7.675161 TGTCTTGGAAATGGATGTATCTAGA 57.325 36.000 0.00 0.00 0.00 2.43
3047 3412 7.989741 ACTTGTCTTGGAAATGGATGTATCTAG 59.010 37.037 0.00 0.00 0.00 2.43
3048 3413 7.861629 ACTTGTCTTGGAAATGGATGTATCTA 58.138 34.615 0.00 0.00 0.00 1.98
3049 3414 6.725364 ACTTGTCTTGGAAATGGATGTATCT 58.275 36.000 0.00 0.00 0.00 1.98
3050 3415 8.506168 TTACTTGTCTTGGAAATGGATGTATC 57.494 34.615 0.00 0.00 0.00 2.24
3052 3417 8.877864 AATTACTTGTCTTGGAAATGGATGTA 57.122 30.769 0.00 0.00 0.00 2.29
3053 3418 7.093771 GGAATTACTTGTCTTGGAAATGGATGT 60.094 37.037 0.00 0.00 0.00 3.06
3054 3419 7.260603 GGAATTACTTGTCTTGGAAATGGATG 58.739 38.462 0.00 0.00 0.00 3.51
3055 3420 6.095440 CGGAATTACTTGTCTTGGAAATGGAT 59.905 38.462 0.00 0.00 0.00 3.41
3056 3421 5.414454 CGGAATTACTTGTCTTGGAAATGGA 59.586 40.000 0.00 0.00 0.00 3.41
3058 3423 5.414454 TCCGGAATTACTTGTCTTGGAAATG 59.586 40.000 0.00 0.00 0.00 2.32
3059 3424 5.414765 GTCCGGAATTACTTGTCTTGGAAAT 59.585 40.000 5.23 0.00 0.00 2.17
3060 3425 4.758165 GTCCGGAATTACTTGTCTTGGAAA 59.242 41.667 5.23 0.00 0.00 3.13
3061 3426 4.320870 GTCCGGAATTACTTGTCTTGGAA 58.679 43.478 5.23 0.00 0.00 3.53
3062 3427 3.615592 CGTCCGGAATTACTTGTCTTGGA 60.616 47.826 5.23 0.00 0.00 3.53
3063 3428 2.671396 CGTCCGGAATTACTTGTCTTGG 59.329 50.000 5.23 0.00 0.00 3.61
3064 3429 3.581755 TCGTCCGGAATTACTTGTCTTG 58.418 45.455 5.23 0.00 0.00 3.02
3066 3431 3.368116 CCTTCGTCCGGAATTACTTGTCT 60.368 47.826 5.23 0.00 33.26 3.41
3067 3432 2.928116 CCTTCGTCCGGAATTACTTGTC 59.072 50.000 5.23 0.00 33.26 3.18
3068 3433 2.354403 CCCTTCGTCCGGAATTACTTGT 60.354 50.000 5.23 0.00 33.26 3.16
3069 3434 2.093869 TCCCTTCGTCCGGAATTACTTG 60.094 50.000 5.23 0.00 33.26 3.16
3070 3435 2.167900 CTCCCTTCGTCCGGAATTACTT 59.832 50.000 5.23 0.00 33.26 2.24
3071 3436 1.755380 CTCCCTTCGTCCGGAATTACT 59.245 52.381 5.23 0.00 33.26 2.24
3072 3437 1.479730 ACTCCCTTCGTCCGGAATTAC 59.520 52.381 5.23 0.00 33.26 1.89
3073 3438 1.856629 ACTCCCTTCGTCCGGAATTA 58.143 50.000 5.23 0.00 33.26 1.40
3074 3439 1.479730 GTACTCCCTTCGTCCGGAATT 59.520 52.381 5.23 0.00 33.26 2.17
3075 3440 1.109609 GTACTCCCTTCGTCCGGAAT 58.890 55.000 5.23 0.00 33.26 3.01
3076 3441 0.251297 TGTACTCCCTTCGTCCGGAA 60.251 55.000 5.23 0.00 0.00 4.30
3077 3442 0.033796 ATGTACTCCCTTCGTCCGGA 60.034 55.000 0.00 0.00 0.00 5.14
3078 3443 0.102481 CATGTACTCCCTTCGTCCGG 59.898 60.000 0.00 0.00 0.00 5.14
3079 3444 1.100510 TCATGTACTCCCTTCGTCCG 58.899 55.000 0.00 0.00 0.00 4.79
3085 3450 7.201938 CCAAATAATGCAATCATGTACTCCCTT 60.202 37.037 0.00 0.00 32.23 3.95
3299 3670 1.296392 CGAGCAGACCATGTTGGGA 59.704 57.895 0.00 0.00 43.37 4.37
3485 3856 6.265422 AGTGCTTTTCAAAACCTATTGCTAGT 59.735 34.615 0.00 0.00 0.00 2.57
3495 3866 4.649088 ACCTGTAGTGCTTTTCAAAACC 57.351 40.909 0.00 0.00 0.00 3.27
3558 3932 3.244526 TGCCTGTGCATATATACCACCAG 60.245 47.826 11.01 8.90 44.23 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.