Multiple sequence alignment - TraesCS2A01G531800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G531800 chr2A 100.000 2267 0 0 1 2267 748557310 748559576 0.000000e+00 4187.0
1 TraesCS2A01G531800 chr2A 83.124 1037 107 40 711 1721 748534723 748535717 0.000000e+00 883.0
2 TraesCS2A01G531800 chr2A 79.778 900 115 41 607 1475 748688127 748688990 1.940000e-165 592.0
3 TraesCS2A01G531800 chr2A 83.307 641 67 13 933 1538 748542262 748542897 2.540000e-154 555.0
4 TraesCS2A01G531800 chr2A 84.429 578 56 16 708 1285 748697864 748698407 2.560000e-149 538.0
5 TraesCS2A01G531800 chr2A 85.515 359 34 13 1588 1934 748542897 748543249 2.140000e-95 359.0
6 TraesCS2A01G531800 chr2A 87.171 304 38 1 1001 1304 748685250 748685552 6.000000e-91 344.0
7 TraesCS2A01G531800 chr2A 83.708 356 31 19 1350 1704 748529615 748529944 6.080000e-81 311.0
8 TraesCS2A01G531800 chr2A 86.441 59 3 5 1323 1378 748698482 748698538 2.430000e-05 60.2
9 TraesCS2A01G531800 chr2D 85.644 1226 109 40 602 1793 618060314 618061506 0.000000e+00 1227.0
10 TraesCS2A01G531800 chr2D 88.158 608 41 14 1 601 87838135 87838718 0.000000e+00 695.0
11 TraesCS2A01G531800 chr2D 83.821 513 56 13 799 1286 618003887 618004397 1.590000e-126 462.0
12 TraesCS2A01G531800 chr2D 86.066 122 9 6 1564 1680 618128309 618128427 8.500000e-25 124.0
13 TraesCS2A01G531800 chr2B 84.467 985 106 30 763 1721 754004415 754005378 0.000000e+00 928.0
14 TraesCS2A01G531800 chr2B 81.285 887 93 27 764 1599 754010733 754011597 0.000000e+00 651.0
15 TraesCS2A01G531800 chr2B 82.188 786 78 26 775 1519 753988300 753989064 8.900000e-174 619.0
16 TraesCS2A01G531800 chr2B 81.129 620 80 23 703 1304 754015682 754016282 1.590000e-126 462.0
17 TraesCS2A01G531800 chr2B 84.718 373 29 10 1350 1721 754014152 754014497 4.630000e-92 348.0
18 TraesCS2A01G531800 chr2B 84.064 251 27 7 1688 1931 754005375 754005619 1.750000e-56 230.0
19 TraesCS2A01G531800 chr2B 94.118 119 4 2 1702 1817 753989212 753989330 6.430000e-41 178.0
20 TraesCS2A01G531800 chr1D 90.820 610 37 8 1 601 75664010 75664609 0.000000e+00 798.0
21 TraesCS2A01G531800 chr7D 88.399 612 42 9 1 601 475144006 475143413 0.000000e+00 710.0
22 TraesCS2A01G531800 chr3B 87.317 615 51 8 1 605 55401491 55402088 0.000000e+00 678.0
23 TraesCS2A01G531800 chr4A 86.526 616 55 10 1 605 134065051 134065649 0.000000e+00 652.0
24 TraesCS2A01G531800 chr4A 89.974 379 30 7 1 374 742843546 742843171 1.220000e-132 483.0
25 TraesCS2A01G531800 chr4A 89.815 216 11 5 401 607 3054010 3053797 1.330000e-67 267.0
26 TraesCS2A01G531800 chr4A 93.750 48 3 0 532 579 522144079 522144126 3.120000e-09 73.1
27 TraesCS2A01G531800 chr6B 88.258 528 42 5 1 525 35815411 35814901 4.140000e-172 614.0
28 TraesCS2A01G531800 chr5D 82.910 591 83 18 1 581 484936029 484935447 1.200000e-142 516.0
29 TraesCS2A01G531800 chr7A 83.774 530 68 17 14 532 731446129 731446651 9.410000e-134 486.0
30 TraesCS2A01G531800 chr4B 84.120 466 62 10 5 463 83306058 83305598 7.380000e-125 457.0
31 TraesCS2A01G531800 chr5B 84.144 473 57 15 5 463 458054362 458053894 2.070000e-120 442.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G531800 chr2A 748557310 748559576 2266 False 4187.0 4187 100.000000 1 2267 1 chr2A.!!$F3 2266
1 TraesCS2A01G531800 chr2A 748534723 748535717 994 False 883.0 883 83.124000 711 1721 1 chr2A.!!$F2 1010
2 TraesCS2A01G531800 chr2A 748685250 748688990 3740 False 468.0 592 83.474500 607 1475 2 chr2A.!!$F5 868
3 TraesCS2A01G531800 chr2A 748542262 748543249 987 False 457.0 555 84.411000 933 1934 2 chr2A.!!$F4 1001
4 TraesCS2A01G531800 chr2A 748697864 748698538 674 False 299.1 538 85.435000 708 1378 2 chr2A.!!$F6 670
5 TraesCS2A01G531800 chr2D 618060314 618061506 1192 False 1227.0 1227 85.644000 602 1793 1 chr2D.!!$F3 1191
6 TraesCS2A01G531800 chr2D 87838135 87838718 583 False 695.0 695 88.158000 1 601 1 chr2D.!!$F1 600
7 TraesCS2A01G531800 chr2D 618003887 618004397 510 False 462.0 462 83.821000 799 1286 1 chr2D.!!$F2 487
8 TraesCS2A01G531800 chr2B 754004415 754005619 1204 False 579.0 928 84.265500 763 1931 2 chr2B.!!$F2 1168
9 TraesCS2A01G531800 chr2B 754010733 754016282 5549 False 487.0 651 82.377333 703 1721 3 chr2B.!!$F3 1018
10 TraesCS2A01G531800 chr2B 753988300 753989330 1030 False 398.5 619 88.153000 775 1817 2 chr2B.!!$F1 1042
11 TraesCS2A01G531800 chr1D 75664010 75664609 599 False 798.0 798 90.820000 1 601 1 chr1D.!!$F1 600
12 TraesCS2A01G531800 chr7D 475143413 475144006 593 True 710.0 710 88.399000 1 601 1 chr7D.!!$R1 600
13 TraesCS2A01G531800 chr3B 55401491 55402088 597 False 678.0 678 87.317000 1 605 1 chr3B.!!$F1 604
14 TraesCS2A01G531800 chr4A 134065051 134065649 598 False 652.0 652 86.526000 1 605 1 chr4A.!!$F1 604
15 TraesCS2A01G531800 chr6B 35814901 35815411 510 True 614.0 614 88.258000 1 525 1 chr6B.!!$R1 524
16 TraesCS2A01G531800 chr5D 484935447 484936029 582 True 516.0 516 82.910000 1 581 1 chr5D.!!$R1 580
17 TraesCS2A01G531800 chr7A 731446129 731446651 522 False 486.0 486 83.774000 14 532 1 chr7A.!!$F1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
969 3340 0.114168 AGTCTCCACTCTCCAGCAGT 59.886 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2155 8088 0.243907 TAATCGCTGAGCTATCCGGC 59.756 55.0 1.78 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 91 2.681344 CCGGTAGTAGCAAAATCCAACC 59.319 50.000 0.00 0.00 0.00 3.77
108 111 4.020543 ACCACTGTTGCAACTTTCCTTTA 58.979 39.130 28.61 6.48 0.00 1.85
132 137 2.030007 GTGCAGTGCCATTGAAGCTTTA 60.030 45.455 13.72 0.00 0.00 1.85
189 195 2.226962 AGCTTTCCTAGGTGACGGTA 57.773 50.000 9.08 0.00 32.15 4.02
201 210 3.007614 AGGTGACGGTAGCAACACTTTAT 59.992 43.478 14.78 1.70 34.28 1.40
346 357 4.680708 CGCTTGTGAAGGCTTTATCTAGGA 60.681 45.833 0.00 0.00 0.00 2.94
510 542 3.422796 GGGATAGAGACGCATAGGAAGA 58.577 50.000 0.00 0.00 0.00 2.87
519 554 1.451936 CATAGGAAGAAGGCGGGGG 59.548 63.158 0.00 0.00 0.00 5.40
638 2913 9.371136 GAAAATGAAGTATCTCATATATGCGGA 57.629 33.333 7.92 8.87 34.90 5.54
639 2914 9.896645 AAAATGAAGTATCTCATATATGCGGAT 57.103 29.630 18.26 18.26 34.90 4.18
745 3047 4.015578 CGCAAGCAAGCAAGCAAA 57.984 50.000 8.92 0.00 36.85 3.68
746 3048 1.850640 CGCAAGCAAGCAAGCAAAG 59.149 52.632 8.92 0.00 36.85 2.77
747 3049 1.554042 CGCAAGCAAGCAAGCAAAGG 61.554 55.000 8.92 0.00 36.85 3.11
748 3050 0.531311 GCAAGCAAGCAAGCAAAGGT 60.531 50.000 3.19 0.00 36.85 3.50
749 3051 1.214367 CAAGCAAGCAAGCAAAGGTG 58.786 50.000 3.19 0.00 36.85 4.00
760 3062 1.152777 CAAAGGTGCAGTGGGTCCA 60.153 57.895 0.00 0.00 0.00 4.02
797 3109 2.123897 AAAACCAGCACCGGCAGT 60.124 55.556 0.00 0.00 44.61 4.40
814 3126 1.014352 AGTCGCTTGTTTTGCTTCGT 58.986 45.000 0.00 0.00 0.00 3.85
818 3130 1.663494 GCTTGTTTTGCTTCGTCTCG 58.337 50.000 0.00 0.00 0.00 4.04
838 3152 0.527565 CCCGTATATAACCCCGTCCG 59.472 60.000 0.00 0.00 0.00 4.79
870 3192 5.063204 TCTTCCTACCATCAACACAAACAG 58.937 41.667 0.00 0.00 0.00 3.16
896 3219 4.433615 TCAACTCACTGAGACAGTTCAAC 58.566 43.478 13.25 0.00 42.59 3.18
969 3340 0.114168 AGTCTCCACTCTCCAGCAGT 59.886 55.000 0.00 0.00 0.00 4.40
987 3364 1.336125 AGTGCAGCAAGAACAAGAAGC 59.664 47.619 0.00 0.00 0.00 3.86
988 3365 0.308684 TGCAGCAAGAACAAGAAGCG 59.691 50.000 0.00 0.00 0.00 4.68
989 3366 1.000736 GCAGCAAGAACAAGAAGCGC 61.001 55.000 0.00 0.00 0.00 5.92
997 3377 2.079925 GAACAAGAAGCGCAGGAGAAT 58.920 47.619 11.47 0.00 0.00 2.40
999 3379 1.002430 ACAAGAAGCGCAGGAGAATCA 59.998 47.619 11.47 0.00 36.25 2.57
1068 3448 2.586792 GTGGAGGCGCTCAAGGAT 59.413 61.111 7.64 0.00 31.08 3.24
1140 3532 4.636435 AAGGCCAACGTCCGTGGG 62.636 66.667 5.01 8.93 42.09 4.61
1286 3685 7.645132 ATTAGGAGTACTAGTAGCTTAGGGA 57.355 40.000 1.87 0.00 32.16 4.20
1304 3703 1.334960 GGATGTTGTGTTCGTTGCAGG 60.335 52.381 0.00 0.00 0.00 4.85
1332 3763 0.255604 ATGCACAACCCCATGATCGA 59.744 50.000 0.00 0.00 0.00 3.59
1348 3782 7.416817 CCATGATCGATTTGTAAATACAGCAA 58.583 34.615 0.00 0.00 37.52 3.91
1393 3880 5.279708 CGGCTATGAATTTATCTCACCCTCT 60.280 44.000 0.00 0.00 0.00 3.69
1406 3893 0.478072 ACCCTCTTTGTCCATGTGCA 59.522 50.000 0.00 0.00 0.00 4.57
1417 3904 3.054508 TGTCCATGTGCATCCATGACTAA 60.055 43.478 16.64 0.14 43.99 2.24
1430 3919 6.662865 TCCATGACTAATTTTTGAAAGGCA 57.337 33.333 0.00 0.00 0.00 4.75
1475 3967 6.226787 AGAGGAACAATGTTCAGAGTTACAG 58.773 40.000 25.14 0.00 0.00 2.74
1489 3981 1.071699 GTTACAGTGGGGAGAGCAACA 59.928 52.381 0.00 0.00 0.00 3.33
1490 3982 0.976641 TACAGTGGGGAGAGCAACAG 59.023 55.000 0.00 0.00 0.00 3.16
1498 3990 2.165998 GGGAGAGCAACAGAGCAAAAT 58.834 47.619 0.00 0.00 36.85 1.82
1507 3999 4.618927 GCAACAGAGCAAAATGAGGCATAA 60.619 41.667 0.00 0.00 0.00 1.90
1519 4011 5.573337 ATGAGGCATAAAGAAAACAGAGC 57.427 39.130 0.00 0.00 0.00 4.09
1540 4036 0.602638 CAGCTGCCTGTACCGAACAA 60.603 55.000 0.00 0.00 37.74 2.83
1563 6834 4.658901 ACCAAACTCTGAAGAAAGGGTAGA 59.341 41.667 0.00 0.00 28.06 2.59
1565 6836 5.703130 CCAAACTCTGAAGAAAGGGTAGAAG 59.297 44.000 0.00 0.00 28.06 2.85
1573 6844 5.839063 TGAAGAAAGGGTAGAAGAGAACAGA 59.161 40.000 0.00 0.00 0.00 3.41
1630 6907 6.349944 CCTCCAAGATTTCACATCTTCTTTGG 60.350 42.308 0.00 0.00 36.32 3.28
1715 6996 1.520342 GATGGAGTCGACCTGCTGC 60.520 63.158 13.01 0.00 31.70 5.25
1728 7078 1.366679 CTGCTGCATGTGACGAGATT 58.633 50.000 1.31 0.00 0.00 2.40
1817 7168 2.429971 GAGCCTGATCAGAGTGATGACA 59.570 50.000 24.62 0.00 37.20 3.58
1870 7221 5.560966 AAACATGTTGTCGTTTTCTCTGT 57.439 34.783 12.82 0.00 31.38 3.41
1896 7249 3.057596 CAGTGAGACAGACACTCCTCTTC 60.058 52.174 0.00 0.00 45.15 2.87
1907 7260 0.979665 CTCCTCTTCCCAGTTGCAGA 59.020 55.000 0.00 0.00 0.00 4.26
1934 7287 3.689897 GTGTAGAATATGCGCACGATC 57.310 47.619 14.90 11.41 0.00 3.69
1935 7288 3.049912 GTGTAGAATATGCGCACGATCA 58.950 45.455 14.90 3.12 0.00 2.92
1936 7289 3.675225 GTGTAGAATATGCGCACGATCAT 59.325 43.478 14.90 0.00 0.00 2.45
1938 7291 2.071540 AGAATATGCGCACGATCATGG 58.928 47.619 14.90 0.00 0.00 3.66
1939 7292 1.800586 GAATATGCGCACGATCATGGT 59.199 47.619 14.90 0.00 0.00 3.55
1940 7293 1.150827 ATATGCGCACGATCATGGTG 58.849 50.000 14.90 0.00 38.42 4.17
1941 7294 0.179086 TATGCGCACGATCATGGTGT 60.179 50.000 14.90 0.00 37.70 4.16
1942 7295 1.431488 ATGCGCACGATCATGGTGTC 61.431 55.000 14.90 0.00 37.70 3.67
1943 7296 2.100031 GCGCACGATCATGGTGTCA 61.100 57.895 0.30 0.00 37.70 3.58
1944 7297 1.431488 GCGCACGATCATGGTGTCAT 61.431 55.000 0.30 0.00 37.70 3.06
1956 7309 0.543277 GGTGTCATGGAGAGGATGCA 59.457 55.000 0.00 0.00 0.00 3.96
1958 7311 2.492012 GTGTCATGGAGAGGATGCATC 58.508 52.381 18.81 18.81 37.99 3.91
1968 7321 3.890527 GGATGCATCCTGACCAGTT 57.109 52.632 34.20 0.00 43.73 3.16
1971 7324 2.171448 GGATGCATCCTGACCAGTTACT 59.829 50.000 34.20 0.00 43.73 2.24
1972 7325 3.388024 GGATGCATCCTGACCAGTTACTA 59.612 47.826 34.20 0.00 43.73 1.82
1973 7326 4.141711 GGATGCATCCTGACCAGTTACTAA 60.142 45.833 34.20 0.00 43.73 2.24
1985 7632 8.385898 TGACCAGTTACTAATTTGACGATTTT 57.614 30.769 0.00 0.00 0.00 1.82
1986 7633 8.500773 TGACCAGTTACTAATTTGACGATTTTC 58.499 33.333 0.00 0.00 0.00 2.29
1987 7634 8.617290 ACCAGTTACTAATTTGACGATTTTCT 57.383 30.769 0.00 0.00 0.00 2.52
1988 7635 8.504005 ACCAGTTACTAATTTGACGATTTTCTG 58.496 33.333 0.00 0.00 0.00 3.02
1989 7636 8.717821 CCAGTTACTAATTTGACGATTTTCTGA 58.282 33.333 0.00 0.00 0.00 3.27
1999 7646 7.872163 TTGACGATTTTCTGAATGATTTTGG 57.128 32.000 0.00 0.00 0.00 3.28
2001 7648 6.208402 TGACGATTTTCTGAATGATTTTGGGA 59.792 34.615 0.00 0.00 0.00 4.37
2004 7651 7.039784 ACGATTTTCTGAATGATTTTGGGAAGA 60.040 33.333 0.00 0.00 0.00 2.87
2005 7652 7.487189 CGATTTTCTGAATGATTTTGGGAAGAG 59.513 37.037 0.00 0.00 0.00 2.85
2006 7653 6.594788 TTTCTGAATGATTTTGGGAAGAGG 57.405 37.500 0.00 0.00 0.00 3.69
2007 7654 5.519183 TCTGAATGATTTTGGGAAGAGGA 57.481 39.130 0.00 0.00 0.00 3.71
2008 7655 6.083487 TCTGAATGATTTTGGGAAGAGGAT 57.917 37.500 0.00 0.00 0.00 3.24
2011 7658 4.886755 ATGATTTTGGGAAGAGGATGGA 57.113 40.909 0.00 0.00 0.00 3.41
2012 7659 4.886755 TGATTTTGGGAAGAGGATGGAT 57.113 40.909 0.00 0.00 0.00 3.41
2013 7660 5.992564 TGATTTTGGGAAGAGGATGGATA 57.007 39.130 0.00 0.00 0.00 2.59
2014 7661 5.694995 TGATTTTGGGAAGAGGATGGATAC 58.305 41.667 0.00 0.00 0.00 2.24
2038 7685 7.649057 ACAAGTTGAAGAAAATACCTTACTGC 58.351 34.615 10.54 0.00 0.00 4.40
2040 7687 8.999431 CAAGTTGAAGAAAATACCTTACTGCTA 58.001 33.333 0.00 0.00 0.00 3.49
2041 7688 8.549338 AGTTGAAGAAAATACCTTACTGCTAC 57.451 34.615 0.00 0.00 0.00 3.58
2042 7689 7.331193 AGTTGAAGAAAATACCTTACTGCTACG 59.669 37.037 0.00 0.00 0.00 3.51
2043 7690 5.579511 TGAAGAAAATACCTTACTGCTACGC 59.420 40.000 0.00 0.00 0.00 4.42
2044 7691 5.340439 AGAAAATACCTTACTGCTACGCT 57.660 39.130 0.00 0.00 0.00 5.07
2046 7693 7.052142 AGAAAATACCTTACTGCTACGCTAT 57.948 36.000 0.00 0.00 0.00 2.97
2048 7695 7.652507 AGAAAATACCTTACTGCTACGCTATTC 59.347 37.037 0.00 0.00 0.00 1.75
2049 7696 6.651975 AATACCTTACTGCTACGCTATTCT 57.348 37.500 0.00 0.00 0.00 2.40
2053 7700 5.826737 ACCTTACTGCTACGCTATTCTAAGA 59.173 40.000 0.00 0.00 0.00 2.10
2057 7704 8.843885 TTACTGCTACGCTATTCTAAGAGATA 57.156 34.615 0.00 0.00 0.00 1.98
2058 7705 7.136289 ACTGCTACGCTATTCTAAGAGATAC 57.864 40.000 0.00 0.00 0.00 2.24
2059 7706 6.938030 ACTGCTACGCTATTCTAAGAGATACT 59.062 38.462 0.00 0.00 0.00 2.12
2060 7707 7.446013 ACTGCTACGCTATTCTAAGAGATACTT 59.554 37.037 0.00 0.00 42.04 2.24
2061 7708 7.808672 TGCTACGCTATTCTAAGAGATACTTC 58.191 38.462 0.00 0.00 39.72 3.01
2062 7709 7.662258 TGCTACGCTATTCTAAGAGATACTTCT 59.338 37.037 0.00 0.00 39.72 2.85
2063 7710 9.153721 GCTACGCTATTCTAAGAGATACTTCTA 57.846 37.037 0.00 0.00 39.72 2.10
2098 8031 9.866798 AGGAAATTTTTCTTCTTATTCATGCTC 57.133 29.630 3.28 0.00 37.35 4.26
2099 8032 9.866798 GGAAATTTTTCTTCTTATTCATGCTCT 57.133 29.630 3.28 0.00 37.35 4.09
2130 8063 8.786937 TTTGCGCATATTCTTCTTATTCATTC 57.213 30.769 12.75 0.00 0.00 2.67
2133 8066 8.712363 TGCGCATATTCTTCTTATTCATTCTAC 58.288 33.333 5.66 0.00 0.00 2.59
2143 8076 9.311916 CTTCTTATTCATTCTACACAGAGAAGG 57.688 37.037 0.00 0.00 38.80 3.46
2144 8077 7.786030 TCTTATTCATTCTACACAGAGAAGGG 58.214 38.462 0.00 0.00 38.80 3.95
2145 8078 3.895232 TCATTCTACACAGAGAAGGGC 57.105 47.619 0.00 0.00 38.80 5.19
2146 8079 3.173151 TCATTCTACACAGAGAAGGGCA 58.827 45.455 0.00 0.00 38.80 5.36
2147 8080 3.776969 TCATTCTACACAGAGAAGGGCAT 59.223 43.478 0.00 0.00 38.80 4.40
2148 8081 4.962362 TCATTCTACACAGAGAAGGGCATA 59.038 41.667 0.00 0.00 38.80 3.14
2149 8082 5.604231 TCATTCTACACAGAGAAGGGCATAT 59.396 40.000 0.00 0.00 38.80 1.78
2150 8083 6.782494 TCATTCTACACAGAGAAGGGCATATA 59.218 38.462 0.00 0.00 38.80 0.86
2152 8085 8.753133 CATTCTACACAGAGAAGGGCATATATA 58.247 37.037 0.00 0.00 38.80 0.86
2153 8086 8.901472 TTCTACACAGAGAAGGGCATATATAT 57.099 34.615 0.00 0.00 31.72 0.86
2154 8087 9.990868 TTCTACACAGAGAAGGGCATATATATA 57.009 33.333 0.00 0.00 31.72 0.86
2155 8088 9.634021 TCTACACAGAGAAGGGCATATATATAG 57.366 37.037 0.00 0.00 0.00 1.31
2166 8099 5.897050 GGCATATATATAGCCGGATAGCTC 58.103 45.833 5.05 0.00 43.67 4.09
2168 8101 6.405286 GGCATATATATAGCCGGATAGCTCAG 60.405 46.154 5.05 0.00 43.67 3.35
2169 8102 6.559810 CATATATATAGCCGGATAGCTCAGC 58.440 44.000 5.05 0.00 43.67 4.26
2170 8103 1.095600 TATAGCCGGATAGCTCAGCG 58.904 55.000 5.05 0.00 43.67 5.18
2171 8104 0.609406 ATAGCCGGATAGCTCAGCGA 60.609 55.000 5.05 0.00 43.67 4.93
2173 8106 1.005630 GCCGGATAGCTCAGCGATT 60.006 57.895 5.05 0.00 0.00 3.34
2175 8108 1.134965 GCCGGATAGCTCAGCGATTAT 60.135 52.381 5.05 0.00 0.00 1.28
2178 8111 3.628032 CCGGATAGCTCAGCGATTATAGA 59.372 47.826 0.00 0.00 0.00 1.98
2180 8113 5.270083 CGGATAGCTCAGCGATTATAGAAG 58.730 45.833 0.00 0.00 0.00 2.85
2181 8114 5.163703 CGGATAGCTCAGCGATTATAGAAGT 60.164 44.000 0.00 0.00 0.00 3.01
2183 8116 7.414208 CGGATAGCTCAGCGATTATAGAAGTAA 60.414 40.741 0.00 0.00 0.00 2.24
2184 8117 8.244802 GGATAGCTCAGCGATTATAGAAGTAAA 58.755 37.037 0.00 0.00 0.00 2.01
2185 8118 8.973835 ATAGCTCAGCGATTATAGAAGTAAAC 57.026 34.615 0.00 0.00 0.00 2.01
2186 8119 6.217294 AGCTCAGCGATTATAGAAGTAAACC 58.783 40.000 0.00 0.00 0.00 3.27
2187 8120 5.983720 GCTCAGCGATTATAGAAGTAAACCA 59.016 40.000 0.00 0.00 0.00 3.67
2188 8121 6.647067 GCTCAGCGATTATAGAAGTAAACCAT 59.353 38.462 0.00 0.00 0.00 3.55
2190 8123 9.862371 CTCAGCGATTATAGAAGTAAACCATAT 57.138 33.333 0.00 0.00 0.00 1.78
2219 8152 9.296400 GAGCTCAATACTAATAGCACTAATAGC 57.704 37.037 9.40 0.00 37.44 2.97
2221 8154 7.221067 GCTCAATACTAATAGCACTAATAGCCG 59.779 40.741 0.60 0.00 35.05 5.52
2222 8155 8.118976 TCAATACTAATAGCACTAATAGCCGT 57.881 34.615 0.60 0.00 0.00 5.68
2223 8156 8.582437 TCAATACTAATAGCACTAATAGCCGTT 58.418 33.333 0.60 0.00 0.00 4.44
2224 8157 8.648097 CAATACTAATAGCACTAATAGCCGTTG 58.352 37.037 0.60 1.08 0.00 4.10
2226 8159 4.682778 AATAGCACTAATAGCCGTTGGA 57.317 40.909 0.00 0.00 0.00 3.53
2227 8160 4.891992 ATAGCACTAATAGCCGTTGGAT 57.108 40.909 0.00 0.00 0.00 3.41
2229 8162 2.700897 AGCACTAATAGCCGTTGGATCT 59.299 45.455 0.00 0.00 0.00 2.75
2230 8163 3.060602 GCACTAATAGCCGTTGGATCTC 58.939 50.000 0.00 0.00 0.00 2.75
2231 8164 3.243907 GCACTAATAGCCGTTGGATCTCT 60.244 47.826 0.00 0.00 0.00 3.10
2232 8165 4.551388 CACTAATAGCCGTTGGATCTCTC 58.449 47.826 0.00 0.00 0.00 3.20
2243 8176 2.842457 TGGATCTCTCCATCAAATGCG 58.158 47.619 0.00 0.00 46.95 4.73
2244 8177 1.534595 GGATCTCTCCATCAAATGCGC 59.465 52.381 0.00 0.00 41.64 6.09
2245 8178 2.216046 GATCTCTCCATCAAATGCGCA 58.784 47.619 14.96 14.96 0.00 6.09
2247 8180 0.379669 CTCTCCATCAAATGCGCACC 59.620 55.000 14.90 0.00 0.00 5.01
2248 8181 0.322366 TCTCCATCAAATGCGCACCA 60.322 50.000 14.90 0.00 0.00 4.17
2249 8182 0.742505 CTCCATCAAATGCGCACCAT 59.257 50.000 14.90 0.00 35.06 3.55
2250 8183 1.135527 CTCCATCAAATGCGCACCATT 59.864 47.619 14.90 5.53 45.90 3.16
2251 8184 1.135053 TCCATCAAATGCGCACCATTG 60.135 47.619 14.90 18.63 43.22 2.82
2252 8185 1.282817 CATCAAATGCGCACCATTGG 58.717 50.000 23.87 10.56 43.22 3.16
2253 8186 1.135053 CATCAAATGCGCACCATTGGA 60.135 47.619 23.87 14.93 45.53 3.53
2254 8187 1.184431 TCAAATGCGCACCATTGGAT 58.816 45.000 23.87 1.67 43.22 3.41
2258 8191 2.057137 ATGCGCACCATTGGATAACT 57.943 45.000 14.90 0.00 0.00 2.24
2259 8192 1.093972 TGCGCACCATTGGATAACTG 58.906 50.000 5.66 0.00 0.00 3.16
2260 8193 1.339535 TGCGCACCATTGGATAACTGA 60.340 47.619 5.66 0.00 0.00 3.41
2264 8197 3.378112 CGCACCATTGGATAACTGAATGT 59.622 43.478 10.37 0.00 0.00 2.71
2265 8198 4.675510 GCACCATTGGATAACTGAATGTG 58.324 43.478 10.37 0.00 0.00 3.21
2266 8199 4.158394 GCACCATTGGATAACTGAATGTGT 59.842 41.667 10.37 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 91 6.019640 CACAATAAAGGAAAGTTGCAACAGTG 60.020 38.462 30.11 17.96 0.00 3.66
108 111 1.337447 GCTTCAATGGCACTGCACAAT 60.337 47.619 2.82 0.00 0.00 2.71
132 137 6.655078 AAAAAGCTTCAACCATAGACACAT 57.345 33.333 0.00 0.00 0.00 3.21
189 195 1.616159 AACCCGCATAAAGTGTTGCT 58.384 45.000 0.00 0.00 36.71 3.91
201 210 0.546122 ATGCTTGGATCTAACCCGCA 59.454 50.000 6.67 6.67 38.78 5.69
310 321 1.220206 CAAGCGCACATCTCCTCCT 59.780 57.895 11.47 0.00 0.00 3.69
346 357 1.152610 GCCATGGCCATGTCCATCT 60.153 57.895 37.30 5.07 44.63 2.90
632 2907 0.394352 GGACCAGACCAAATCCGCAT 60.394 55.000 0.00 0.00 0.00 4.73
638 2913 0.631212 GGGATGGGACCAGACCAAAT 59.369 55.000 15.65 0.00 42.17 2.32
639 2914 0.774096 TGGGATGGGACCAGACCAAA 60.774 55.000 12.67 2.47 42.17 3.28
688 2963 2.197605 CCCGGCCGGTCTTGTTTTT 61.198 57.895 40.52 0.00 0.00 1.94
742 3044 0.754957 TTGGACCCACTGCACCTTTG 60.755 55.000 0.00 0.00 0.00 2.77
743 3045 0.032615 TTTGGACCCACTGCACCTTT 60.033 50.000 0.00 0.00 0.00 3.11
744 3046 0.032615 TTTTGGACCCACTGCACCTT 60.033 50.000 0.00 0.00 0.00 3.50
745 3047 0.468029 CTTTTGGACCCACTGCACCT 60.468 55.000 0.00 0.00 0.00 4.00
746 3048 2.041153 CTTTTGGACCCACTGCACC 58.959 57.895 0.00 0.00 0.00 5.01
747 3049 1.363807 GCTTTTGGACCCACTGCAC 59.636 57.895 0.00 0.00 0.00 4.57
748 3050 1.076412 TGCTTTTGGACCCACTGCA 60.076 52.632 5.94 5.94 0.00 4.41
749 3051 1.363807 GTGCTTTTGGACCCACTGC 59.636 57.895 0.00 0.00 34.49 4.40
760 3062 1.112916 CCAGGAAACCGGGTGCTTTT 61.113 55.000 6.32 0.00 34.16 2.27
797 3109 1.260561 GAGACGAAGCAAAACAAGCGA 59.739 47.619 0.00 0.00 37.01 4.93
814 3126 1.549203 GGGGTTATATACGGGCGAGA 58.451 55.000 0.00 0.00 0.00 4.04
818 3130 0.247460 GGACGGGGTTATATACGGGC 59.753 60.000 0.00 0.00 0.00 6.13
838 3152 2.233305 TGGTAGGAAGAGTGGGAGTC 57.767 55.000 0.00 0.00 0.00 3.36
870 3192 2.289320 ACTGTCTCAGTGAGTTGATGCC 60.289 50.000 19.53 1.97 43.63 4.40
896 3219 7.420800 AGTTGAACAGAGCTAGTTTGATTTTG 58.579 34.615 5.59 0.00 0.00 2.44
969 3340 0.308684 CGCTTCTTGTTCTTGCTGCA 59.691 50.000 0.00 0.00 0.00 4.41
987 3364 0.661552 CAGCCATTGATTCTCCTGCG 59.338 55.000 0.00 0.00 0.00 5.18
988 3365 1.030457 CCAGCCATTGATTCTCCTGC 58.970 55.000 0.00 0.00 0.00 4.85
989 3366 2.295885 GACCAGCCATTGATTCTCCTG 58.704 52.381 0.00 0.00 0.00 3.86
997 3377 4.776322 CGCCGGACCAGCCATTGA 62.776 66.667 5.05 0.00 35.94 2.57
999 3379 3.976701 CTTCGCCGGACCAGCCATT 62.977 63.158 5.05 0.00 35.94 3.16
1286 3685 1.388547 ACCTGCAACGAACACAACAT 58.611 45.000 0.00 0.00 0.00 2.71
1332 3763 9.961265 CATCATCATCTTGCTGTATTTACAAAT 57.039 29.630 0.00 0.00 35.50 2.32
1348 3782 6.264744 AGCCGAAATTTTCATCATCATCATCT 59.735 34.615 9.66 0.00 0.00 2.90
1384 3871 2.430465 CACATGGACAAAGAGGGTGAG 58.570 52.381 0.00 0.00 0.00 3.51
1393 3880 2.492881 GTCATGGATGCACATGGACAAA 59.507 45.455 15.15 0.00 46.33 2.83
1406 3893 7.243604 TGCCTTTCAAAAATTAGTCATGGAT 57.756 32.000 0.00 0.00 0.00 3.41
1435 3924 5.218139 GTTCCTCTTTTGACAAGCATCAAG 58.782 41.667 0.00 0.00 39.68 3.02
1450 3939 6.591935 TGTAACTCTGAACATTGTTCCTCTT 58.408 36.000 23.22 13.01 0.00 2.85
1475 3967 1.376553 GCTCTGTTGCTCTCCCCAC 60.377 63.158 0.00 0.00 0.00 4.61
1489 3981 6.594788 TTTCTTTATGCCTCATTTTGCTCT 57.405 33.333 0.00 0.00 0.00 4.09
1490 3982 6.646240 TGTTTTCTTTATGCCTCATTTTGCTC 59.354 34.615 0.00 0.00 0.00 4.26
1498 3990 4.655963 AGCTCTGTTTTCTTTATGCCTCA 58.344 39.130 0.00 0.00 0.00 3.86
1507 3999 1.878734 GCAGCTGAGCTCTGTTTTCTT 59.121 47.619 20.43 0.00 36.40 2.52
1519 4011 0.737715 GTTCGGTACAGGCAGCTGAG 60.738 60.000 20.43 8.88 0.00 3.35
1540 4036 3.953542 ACCCTTTCTTCAGAGTTTGGT 57.046 42.857 0.00 0.00 0.00 3.67
1563 6834 4.424842 AGATCCAACTCCTCTGTTCTCTT 58.575 43.478 0.00 0.00 0.00 2.85
1565 6836 3.766591 TGAGATCCAACTCCTCTGTTCTC 59.233 47.826 0.00 0.00 36.22 2.87
1573 6844 1.786937 ATCGCTGAGATCCAACTCCT 58.213 50.000 0.00 0.00 33.45 3.69
1630 6907 2.484264 CCTGGAGGTGTTCGAATTTGAC 59.516 50.000 0.00 0.00 0.00 3.18
1715 6996 0.371301 CGCCACAATCTCGTCACATG 59.629 55.000 0.00 0.00 0.00 3.21
1728 7078 1.960417 TTCAGAACATGTTCGCCACA 58.040 45.000 28.18 12.45 43.97 4.17
1849 7200 5.123186 TGAACAGAGAAAACGACAACATGTT 59.877 36.000 4.92 4.92 0.00 2.71
1850 7201 4.634004 TGAACAGAGAAAACGACAACATGT 59.366 37.500 0.00 0.00 0.00 3.21
1854 7205 4.092968 ACTGTGAACAGAGAAAACGACAAC 59.907 41.667 17.11 0.00 46.59 3.32
1855 7206 4.092821 CACTGTGAACAGAGAAAACGACAA 59.907 41.667 17.11 0.00 46.59 3.18
1856 7207 3.616821 CACTGTGAACAGAGAAAACGACA 59.383 43.478 17.11 0.00 46.59 4.35
1857 7208 3.863424 TCACTGTGAACAGAGAAAACGAC 59.137 43.478 17.11 0.00 46.59 4.34
1859 7210 4.026475 GTCTCACTGTGAACAGAGAAAACG 60.026 45.833 17.11 3.51 46.59 3.60
1860 7211 4.870426 TGTCTCACTGTGAACAGAGAAAAC 59.130 41.667 17.11 14.12 46.59 2.43
1870 7221 2.362397 GGAGTGTCTGTCTCACTGTGAA 59.638 50.000 12.16 0.59 44.68 3.18
1907 7260 1.213094 GCATATTCTACACGGCGCGT 61.213 55.000 6.90 6.21 42.36 6.01
1935 7288 1.142465 GCATCCTCTCCATGACACCAT 59.858 52.381 0.00 0.00 0.00 3.55
1936 7289 0.543277 GCATCCTCTCCATGACACCA 59.457 55.000 0.00 0.00 0.00 4.17
1938 7291 2.492012 GATGCATCCTCTCCATGACAC 58.508 52.381 16.23 0.00 0.00 3.67
1939 7292 1.419012 GGATGCATCCTCTCCATGACA 59.581 52.381 34.20 0.00 43.73 3.58
1940 7293 2.181954 GGATGCATCCTCTCCATGAC 57.818 55.000 34.20 7.44 43.73 3.06
1951 7304 3.550437 AGTAACTGGTCAGGATGCATC 57.450 47.619 18.81 18.81 34.76 3.91
1952 7305 5.636903 ATTAGTAACTGGTCAGGATGCAT 57.363 39.130 0.00 0.00 34.76 3.96
1956 7309 6.070995 TCGTCAAATTAGTAACTGGTCAGGAT 60.071 38.462 2.87 0.00 0.00 3.24
1958 7311 5.475719 TCGTCAAATTAGTAACTGGTCAGG 58.524 41.667 2.87 0.00 0.00 3.86
1960 7313 7.972832 AAATCGTCAAATTAGTAACTGGTCA 57.027 32.000 0.00 0.00 0.00 4.02
1961 7314 8.718734 AGAAAATCGTCAAATTAGTAACTGGTC 58.281 33.333 0.00 0.00 0.00 4.02
1962 7315 8.504005 CAGAAAATCGTCAAATTAGTAACTGGT 58.496 33.333 0.00 0.00 0.00 4.00
1963 7316 8.717821 TCAGAAAATCGTCAAATTAGTAACTGG 58.282 33.333 0.00 0.00 0.00 4.00
1973 7326 8.928733 CCAAAATCATTCAGAAAATCGTCAAAT 58.071 29.630 0.00 0.00 0.00 2.32
1985 7632 5.519183 TCCTCTTCCCAAAATCATTCAGA 57.481 39.130 0.00 0.00 0.00 3.27
1986 7633 5.068723 CCATCCTCTTCCCAAAATCATTCAG 59.931 44.000 0.00 0.00 0.00 3.02
1987 7634 4.957954 CCATCCTCTTCCCAAAATCATTCA 59.042 41.667 0.00 0.00 0.00 2.57
1988 7635 5.203528 TCCATCCTCTTCCCAAAATCATTC 58.796 41.667 0.00 0.00 0.00 2.67
1989 7636 5.211078 TCCATCCTCTTCCCAAAATCATT 57.789 39.130 0.00 0.00 0.00 2.57
1990 7637 4.886755 TCCATCCTCTTCCCAAAATCAT 57.113 40.909 0.00 0.00 0.00 2.45
1991 7638 4.886755 ATCCATCCTCTTCCCAAAATCA 57.113 40.909 0.00 0.00 0.00 2.57
1992 7639 5.694995 TGTATCCATCCTCTTCCCAAAATC 58.305 41.667 0.00 0.00 0.00 2.17
1993 7640 5.732331 TGTATCCATCCTCTTCCCAAAAT 57.268 39.130 0.00 0.00 0.00 1.82
1995 7642 4.540099 ACTTGTATCCATCCTCTTCCCAAA 59.460 41.667 0.00 0.00 0.00 3.28
1996 7643 4.111577 ACTTGTATCCATCCTCTTCCCAA 58.888 43.478 0.00 0.00 0.00 4.12
1997 7644 3.736094 ACTTGTATCCATCCTCTTCCCA 58.264 45.455 0.00 0.00 0.00 4.37
1999 7646 5.359194 TCAACTTGTATCCATCCTCTTCC 57.641 43.478 0.00 0.00 0.00 3.46
2001 7648 6.627087 TCTTCAACTTGTATCCATCCTCTT 57.373 37.500 0.00 0.00 0.00 2.85
2004 7651 9.178758 GTATTTTCTTCAACTTGTATCCATCCT 57.821 33.333 0.00 0.00 0.00 3.24
2005 7652 8.406297 GGTATTTTCTTCAACTTGTATCCATCC 58.594 37.037 0.00 0.00 0.00 3.51
2006 7653 9.178758 AGGTATTTTCTTCAACTTGTATCCATC 57.821 33.333 0.00 0.00 0.00 3.51
2007 7654 9.533831 AAGGTATTTTCTTCAACTTGTATCCAT 57.466 29.630 0.00 0.00 0.00 3.41
2008 7655 8.934023 AAGGTATTTTCTTCAACTTGTATCCA 57.066 30.769 0.00 0.00 0.00 3.41
2012 7659 8.780249 GCAGTAAGGTATTTTCTTCAACTTGTA 58.220 33.333 0.00 0.00 0.00 2.41
2013 7660 7.502561 AGCAGTAAGGTATTTTCTTCAACTTGT 59.497 33.333 0.00 0.00 0.00 3.16
2014 7661 7.875971 AGCAGTAAGGTATTTTCTTCAACTTG 58.124 34.615 0.00 0.00 0.00 3.16
2015 7662 9.000486 GTAGCAGTAAGGTATTTTCTTCAACTT 58.000 33.333 0.00 0.00 31.99 2.66
2016 7663 7.331193 CGTAGCAGTAAGGTATTTTCTTCAACT 59.669 37.037 0.00 0.00 31.99 3.16
2017 7664 7.453838 CGTAGCAGTAAGGTATTTTCTTCAAC 58.546 38.462 0.00 0.00 31.99 3.18
2018 7665 7.591006 CGTAGCAGTAAGGTATTTTCTTCAA 57.409 36.000 0.00 0.00 31.99 2.69
2034 7681 7.446013 AAGTATCTCTTAGAATAGCGTAGCAGT 59.554 37.037 0.00 0.00 46.39 4.40
2035 7682 7.812648 AAGTATCTCTTAGAATAGCGTAGCAG 58.187 38.462 0.00 0.00 46.39 4.24
2072 7719 9.866798 GAGCATGAATAAGAAGAAAAATTTCCT 57.133 29.630 0.00 0.00 37.92 3.36
2103 8036 9.585099 AATGAATAAGAAGAATATGCGCAAAAA 57.415 25.926 17.11 2.95 0.00 1.94
2104 8037 9.236691 GAATGAATAAGAAGAATATGCGCAAAA 57.763 29.630 17.11 6.15 0.00 2.44
2105 8038 8.623903 AGAATGAATAAGAAGAATATGCGCAAA 58.376 29.630 17.11 0.00 0.00 3.68
2106 8039 8.158169 AGAATGAATAAGAAGAATATGCGCAA 57.842 30.769 17.11 4.13 0.00 4.85
2107 8040 7.734924 AGAATGAATAAGAAGAATATGCGCA 57.265 32.000 14.96 14.96 0.00 6.09
2108 8041 8.712363 TGTAGAATGAATAAGAAGAATATGCGC 58.288 33.333 0.00 0.00 0.00 6.09
2117 8050 9.311916 CCTTCTCTGTGTAGAATGAATAAGAAG 57.688 37.037 0.00 0.00 35.04 2.85
2118 8051 8.260818 CCCTTCTCTGTGTAGAATGAATAAGAA 58.739 37.037 0.00 0.00 35.04 2.52
2122 8055 5.425217 TGCCCTTCTCTGTGTAGAATGAATA 59.575 40.000 0.00 0.00 35.04 1.75
2125 8058 3.173151 TGCCCTTCTCTGTGTAGAATGA 58.827 45.455 0.00 0.00 35.04 2.57
2126 8059 3.616956 TGCCCTTCTCTGTGTAGAATG 57.383 47.619 0.00 0.00 35.04 2.67
2130 8063 8.356657 GCTATATATATGCCCTTCTCTGTGTAG 58.643 40.741 5.44 0.00 0.00 2.74
2133 8066 6.520272 GGCTATATATATGCCCTTCTCTGTG 58.480 44.000 18.27 0.00 40.71 3.66
2135 8068 5.279206 CCGGCTATATATATGCCCTTCTCTG 60.279 48.000 20.97 11.15 43.42 3.35
2142 8075 4.712337 AGCTATCCGGCTATATATATGCCC 59.288 45.833 20.97 13.45 43.42 5.36
2143 8076 5.419155 TGAGCTATCCGGCTATATATATGCC 59.581 44.000 18.74 18.74 43.20 4.40
2144 8077 6.516739 TGAGCTATCCGGCTATATATATGC 57.483 41.667 5.44 6.98 43.20 3.14
2145 8078 6.559810 GCTGAGCTATCCGGCTATATATATG 58.440 44.000 5.44 0.00 43.20 1.78
2146 8079 5.355630 CGCTGAGCTATCCGGCTATATATAT 59.644 44.000 1.78 0.00 43.20 0.86
2147 8080 4.695928 CGCTGAGCTATCCGGCTATATATA 59.304 45.833 1.78 0.00 43.20 0.86
2148 8081 3.504134 CGCTGAGCTATCCGGCTATATAT 59.496 47.826 1.78 0.00 43.20 0.86
2149 8082 2.879026 CGCTGAGCTATCCGGCTATATA 59.121 50.000 1.78 0.00 43.20 0.86
2150 8083 1.678627 CGCTGAGCTATCCGGCTATAT 59.321 52.381 1.78 0.00 43.20 0.86
2152 8085 0.609406 TCGCTGAGCTATCCGGCTAT 60.609 55.000 1.78 0.00 43.20 2.97
2153 8086 0.609406 ATCGCTGAGCTATCCGGCTA 60.609 55.000 1.78 0.00 43.20 3.93
2154 8087 1.467678 AATCGCTGAGCTATCCGGCT 61.468 55.000 1.78 0.00 46.11 5.52
2155 8088 0.243907 TAATCGCTGAGCTATCCGGC 59.756 55.000 1.78 0.00 0.00 6.13
2157 8090 4.884458 TCTATAATCGCTGAGCTATCCG 57.116 45.455 1.78 0.00 0.00 4.18
2158 8091 6.202516 ACTTCTATAATCGCTGAGCTATCC 57.797 41.667 1.78 0.00 0.00 2.59
2159 8092 9.068008 GTTTACTTCTATAATCGCTGAGCTATC 57.932 37.037 1.78 0.00 0.00 2.08
2160 8093 8.030106 GGTTTACTTCTATAATCGCTGAGCTAT 58.970 37.037 1.78 0.00 0.00 2.97
2161 8094 7.013942 TGGTTTACTTCTATAATCGCTGAGCTA 59.986 37.037 1.78 0.00 0.00 3.32
2163 8096 5.983720 TGGTTTACTTCTATAATCGCTGAGC 59.016 40.000 0.00 0.00 0.00 4.26
2164 8097 9.862371 ATATGGTTTACTTCTATAATCGCTGAG 57.138 33.333 0.00 0.00 0.00 3.35
2193 8126 9.296400 GCTATTAGTGCTATTAGTATTGAGCTC 57.704 37.037 6.82 6.82 35.89 4.09
2194 8127 8.254508 GGCTATTAGTGCTATTAGTATTGAGCT 58.745 37.037 0.00 0.00 35.89 4.09
2195 8128 7.221067 CGGCTATTAGTGCTATTAGTATTGAGC 59.779 40.741 8.84 0.00 35.43 4.26
2197 8130 8.118976 ACGGCTATTAGTGCTATTAGTATTGA 57.881 34.615 8.84 0.00 0.00 2.57
2198 8131 8.648097 CAACGGCTATTAGTGCTATTAGTATTG 58.352 37.037 8.84 7.63 0.00 1.90
2200 8133 7.177921 TCCAACGGCTATTAGTGCTATTAGTAT 59.822 37.037 8.84 0.00 0.00 2.12
2201 8134 6.491062 TCCAACGGCTATTAGTGCTATTAGTA 59.509 38.462 8.84 0.00 0.00 1.82
2202 8135 5.303589 TCCAACGGCTATTAGTGCTATTAGT 59.696 40.000 8.84 0.00 0.00 2.24
2203 8136 5.779922 TCCAACGGCTATTAGTGCTATTAG 58.220 41.667 0.00 4.61 0.00 1.73
2204 8137 5.794726 TCCAACGGCTATTAGTGCTATTA 57.205 39.130 0.00 0.00 0.00 0.98
2205 8138 4.682778 TCCAACGGCTATTAGTGCTATT 57.317 40.909 0.00 0.00 0.00 1.73
2206 8139 4.528596 AGATCCAACGGCTATTAGTGCTAT 59.471 41.667 0.00 0.00 0.00 2.97
2207 8140 3.895656 AGATCCAACGGCTATTAGTGCTA 59.104 43.478 0.00 0.00 0.00 3.49
2209 8142 3.060602 GAGATCCAACGGCTATTAGTGC 58.939 50.000 0.00 0.00 0.00 4.40
2210 8143 4.551388 GAGAGATCCAACGGCTATTAGTG 58.449 47.826 0.00 0.00 0.00 2.74
2211 8144 3.574826 GGAGAGATCCAACGGCTATTAGT 59.425 47.826 0.00 0.00 0.00 2.24
2212 8145 3.574396 TGGAGAGATCCAACGGCTATTAG 59.426 47.826 0.00 0.00 36.74 1.73
2214 8147 2.398588 TGGAGAGATCCAACGGCTATT 58.601 47.619 0.00 0.00 36.74 1.73
2215 8148 2.088104 TGGAGAGATCCAACGGCTAT 57.912 50.000 0.00 0.00 36.74 2.97
2217 8150 0.755686 GATGGAGAGATCCAACGGCT 59.244 55.000 0.29 0.00 43.83 5.52
2218 8151 0.465705 TGATGGAGAGATCCAACGGC 59.534 55.000 0.29 0.00 43.83 5.68
2219 8152 2.988010 TTGATGGAGAGATCCAACGG 57.012 50.000 0.29 0.00 43.83 4.44
2221 8154 3.003068 CGCATTTGATGGAGAGATCCAAC 59.997 47.826 0.29 0.00 43.83 3.77
2222 8155 3.208594 CGCATTTGATGGAGAGATCCAA 58.791 45.455 0.29 0.00 43.83 3.53
2223 8156 2.842457 CGCATTTGATGGAGAGATCCA 58.158 47.619 0.00 0.00 44.85 3.41
2224 8157 1.534595 GCGCATTTGATGGAGAGATCC 59.465 52.381 0.30 0.00 0.00 3.36
2226 8159 1.945394 GTGCGCATTTGATGGAGAGAT 59.055 47.619 15.91 0.00 0.00 2.75
2227 8160 1.372582 GTGCGCATTTGATGGAGAGA 58.627 50.000 15.91 0.00 0.00 3.10
2229 8162 0.322366 TGGTGCGCATTTGATGGAGA 60.322 50.000 15.91 0.00 0.00 3.71
2230 8163 0.742505 ATGGTGCGCATTTGATGGAG 59.257 50.000 15.91 0.00 0.00 3.86
2231 8164 1.135053 CAATGGTGCGCATTTGATGGA 60.135 47.619 15.91 0.00 0.00 3.41
2232 8165 1.282817 CAATGGTGCGCATTTGATGG 58.717 50.000 15.91 0.00 0.00 3.51
2234 8167 1.184431 TCCAATGGTGCGCATTTGAT 58.816 45.000 23.80 9.19 0.00 2.57
2235 8168 1.184431 ATCCAATGGTGCGCATTTGA 58.816 45.000 23.80 13.33 0.00 2.69
2236 8169 2.859538 GTTATCCAATGGTGCGCATTTG 59.140 45.455 15.91 17.52 0.00 2.32
2237 8170 2.760092 AGTTATCCAATGGTGCGCATTT 59.240 40.909 15.91 5.25 0.00 2.32
2238 8171 2.099592 CAGTTATCCAATGGTGCGCATT 59.900 45.455 15.91 0.00 0.00 3.56
2239 8172 1.677576 CAGTTATCCAATGGTGCGCAT 59.322 47.619 15.91 0.00 0.00 4.73
2240 8173 1.093972 CAGTTATCCAATGGTGCGCA 58.906 50.000 5.66 5.66 0.00 6.09
2241 8174 1.378531 TCAGTTATCCAATGGTGCGC 58.621 50.000 0.00 0.00 0.00 6.09
2243 8176 4.158394 ACACATTCAGTTATCCAATGGTGC 59.842 41.667 0.00 0.00 32.68 5.01
2244 8177 5.902613 ACACATTCAGTTATCCAATGGTG 57.097 39.130 0.00 0.00 32.68 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.