AutoCloner

Multiple sequence alignment - TraesCS2A01G531600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G531600	chr2A	100.000	3329	0	0	1	3329	748545451	748548779	0.000000e+00	6148
1	TraesCS2A01G531600	chr2A	91.031	2230	181	9	1103	3327	651135886	651133671	0.000000e+00	2992
2	TraesCS2A01G531600	chr2A	85.110	1088	113	28	16	1095	748536906	748537952	0.000000e+00	1066
3	TraesCS2A01G531600	chr2A	82.786	639	79	19	16	645	748527323	748527939	2.920000e-150	542
4	TraesCS2A01G531600	chr5D	92.793	2234	149	9	1098	3327	525592663	525594888	0.000000e+00	3223
5	TraesCS2A01G531600	chr5D	92.301	2234	152	9	1103	3327	174805342	174803120	0.000000e+00	3155
6	TraesCS2A01G531600	chr2D	92.297	2233	152	11	1101	3327	586776510	586774292	0.000000e+00	3153
7	TraesCS2A01G531600	chr2D	88.745	462	39	12	16	467	617994221	617994679	1.350000e-153	553
8	TraesCS2A01G531600	chr2D	82.759	580	56	19	520	1095	617994747	617995286	8.360000e-131	477
9	TraesCS2A01G531600	chr2D	75.972	566	100	29	551	1095	617972596	617973146	3.290000e-65	259
10	TraesCS2A01G531600	chr6D	91.987	2234	165	9	1098	3327	452834602	452836825	0.000000e+00	3121
11	TraesCS2A01G531600	chr7B	91.973	2230	159	9	1100	3327	87820556	87822767	0.000000e+00	3109
12	TraesCS2A01G531600	chr1D	93.055	2131	137	7	1201	3327	495236174	495238297	0.000000e+00	3105
13	TraesCS2A01G531600	chr1D	91.047	2234	177	16	1101	3327	453131481	453133698	0.000000e+00	2996
14	TraesCS2A01G531600	chr1B	91.145	2236	177	15	1103	3327	636473639	636471414	0.000000e+00	3013
15	TraesCS2A01G531600	chr2B	87.228	368	38	8	16	379	754000456	754000818	8.600000e-111	411
16	TraesCS2A01G531600	chr2B	80.034	591	59	30	529	1105	754000855	754001400	1.870000e-102	383
17	TraesCS2A01G531600	chr2B	89.583	240	24	1	16	255	753985841	753986079	1.500000e-78	303
18	TraesCS2A01G531600	chr2B	86.466	133	16	1	963	1095	753986860	753986990	9.630000e-31	145

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G531600	chr2A	748545451	748548779	3328	False	6148	6148	100.0000	1	3329	1	chr2A.!!$F3	3328
1	TraesCS2A01G531600	chr2A	651133671	651135886	2215	True	2992	2992	91.0310	1103	3327	1	chr2A.!!$R1	2224
2	TraesCS2A01G531600	chr2A	748536906	748537952	1046	False	1066	1066	85.1100	16	1095	1	chr2A.!!$F2	1079
3	TraesCS2A01G531600	chr2A	748527323	748527939	616	False	542	542	82.7860	16	645	1	chr2A.!!$F1	629
4	TraesCS2A01G531600	chr5D	525592663	525594888	2225	False	3223	3223	92.7930	1098	3327	1	chr5D.!!$F1	2229
5	TraesCS2A01G531600	chr5D	174803120	174805342	2222	True	3155	3155	92.3010	1103	3327	1	chr5D.!!$R1	2224
6	TraesCS2A01G531600	chr2D	586774292	586776510	2218	True	3153	3153	92.2970	1101	3327	1	chr2D.!!$R1	2226
7	TraesCS2A01G531600	chr2D	617994221	617995286	1065	False	515	553	85.7520	16	1095	2	chr2D.!!$F2	1079
8	TraesCS2A01G531600	chr2D	617972596	617973146	550	False	259	259	75.9720	551	1095	1	chr2D.!!$F1	544
9	TraesCS2A01G531600	chr6D	452834602	452836825	2223	False	3121	3121	91.9870	1098	3327	1	chr6D.!!$F1	2229
10	TraesCS2A01G531600	chr7B	87820556	87822767	2211	False	3109	3109	91.9730	1100	3327	1	chr7B.!!$F1	2227
11	TraesCS2A01G531600	chr1D	495236174	495238297	2123	False	3105	3105	93.0550	1201	3327	1	chr1D.!!$F2	2126
12	TraesCS2A01G531600	chr1D	453131481	453133698	2217	False	2996	2996	91.0470	1101	3327	1	chr1D.!!$F1	2226
13	TraesCS2A01G531600	chr1B	636471414	636473639	2225	True	3013	3013	91.1450	1103	3327	1	chr1B.!!$R1	2224
14	TraesCS2A01G531600	chr2B	754000456	754001400	944	False	397	411	83.6310	16	1105	2	chr2B.!!$F2	1089
15	TraesCS2A01G531600	chr2B	753985841	753986990	1149	False	224	303	88.0245	16	1095	2	chr2B.!!$F1	1079

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
887	1223	0.038166	TCAACCAGCCTTCATCCCAC	59.962	55.0	0.0	0.0	0.0	4.61	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2666	3048	0.109723	ACACAAAAGAGGGCGGCTTA	59.89	50.0	9.56	0.0	0.0	3.09	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	4.104383	ACCTCATGGTCACAAAAGATGT	57.896	40.909	0.00	0.00	44.78	3.06
164	167	6.932901	TGAATGAATTTGCGAACAATCTTC	57.067	33.333	0.00	0.00	35.21	2.87
396	627	8.921670	CCAATTTTATTTGCACACTTAGTTACC	58.078	33.333	0.00	0.00	0.00	2.85
428	662	4.568072	AACCACATCTATGGCAACTACA	57.432	40.909	0.00	0.00	44.33	2.74
589	874	8.817100	TGAATCTGCTTACTGAATATTTACACG	58.183	33.333	0.00	0.00	0.00	4.49
628	942	3.318275	TCATATCTTATATCCGCCGGCTC	59.682	47.826	26.68	0.00	0.00	4.70
650	964	1.198713	GCCAATCCCAGACTCTCTCA	58.801	55.000	0.00	0.00	0.00	3.27
693	1013	0.392729	ACGGGGAACAAAACGACACA	60.393	50.000	0.00	0.00	0.00	3.72
795	1115	1.890041	TCCGCGACCACTGTTTTGG	60.890	57.895	8.23	0.00	43.04	3.28
842	1171	1.111116	TATAACCTCGTCCCAGCCCG	61.111	60.000	0.00	0.00	0.00	6.13
861	1197	0.103937	GGCTCTCCCTCTCATCAACG	59.896	60.000	0.00	0.00	0.00	4.10
884	1220	0.743097	GCATCAACCAGCCTTCATCC	59.257	55.000	0.00	0.00	0.00	3.51
887	1223	0.038166	TCAACCAGCCTTCATCCCAC	59.962	55.000	0.00	0.00	0.00	4.61
899	1235	4.082571	CCTTCATCCCACTTCATTCACAAC	60.083	45.833	0.00	0.00	0.00	3.32
921	1264	3.325870	CAGAAATTCCGCACTCTACACA	58.674	45.455	0.00	0.00	0.00	3.72
929	1272	0.776451	GCACTCTACACACGACAACG	59.224	55.000	0.00	0.00	45.75	4.10
941	1284	1.736681	ACGACAACGAGCTACTCTACC	59.263	52.381	0.00	0.00	42.66	3.18
942	1285	2.008329	CGACAACGAGCTACTCTACCT	58.992	52.381	0.00	0.00	42.66	3.08
950	1293	3.558418	CGAGCTACTCTACCTCTCTTCAC	59.442	52.174	0.00	0.00	0.00	3.18
951	1294	3.881089	GAGCTACTCTACCTCTCTTCACC	59.119	52.174	0.00	0.00	0.00	4.02
957	1300	3.636300	CTCTACCTCTCTTCACCCATCAG	59.364	52.174	0.00	0.00	0.00	2.90
959	1302	1.202330	CCTCTCTTCACCCATCAGCT	58.798	55.000	0.00	0.00	0.00	4.24
960	1303	2.292521	ACCTCTCTTCACCCATCAGCTA	60.293	50.000	0.00	0.00	0.00	3.32
961	1304	2.364970	CCTCTCTTCACCCATCAGCTAG	59.635	54.545	0.00	0.00	0.00	3.42
971	1314	4.160439	CACCCATCAGCTAGTACTTCAGAA	59.840	45.833	0.00	0.00	0.00	3.02
991	1349	0.813610	TTTCAGACCACCAGCACACG	60.814	55.000	0.00	0.00	0.00	4.49
1005	1363	0.531532	CACACGGAGAGATCATGGCC	60.532	60.000	0.00	0.00	0.00	5.36
1095	1453	1.834263	GGACTCTGCCACTGGAACTAT	59.166	52.381	0.00	0.00	0.00	2.12
1168	1526	3.718480	GATCGGCGCGGACAAAAGC	62.718	63.158	20.65	0.00	0.00	3.51
1174	1532	3.343421	GCGGACAAAAGCGACGGT	61.343	61.111	0.00	0.00	0.00	4.83
1179	1537	0.658897	GACAAAAGCGACGGTCCAAA	59.341	50.000	0.00	0.00	0.00	3.28
1238	1596	2.750237	GCGACCCATTTCCGGCTT	60.750	61.111	0.00	0.00	0.00	4.35
1304	1672	1.227664	CGCCTACTCCTCTCCCTGA	59.772	63.158	0.00	0.00	0.00	3.86
1306	1674	1.112916	GCCTACTCCTCTCCCTGAGC	61.113	65.000	0.00	0.00	41.35	4.26
1307	1675	0.469144	CCTACTCCTCTCCCTGAGCC	60.469	65.000	0.00	0.00	41.35	4.70
1308	1676	0.555769	CTACTCCTCTCCCTGAGCCT	59.444	60.000	0.00	0.00	41.35	4.58
1309	1677	0.260230	TACTCCTCTCCCTGAGCCTG	59.740	60.000	0.00	0.00	41.35	4.85
1310	1678	2.364842	TCCTCTCCCTGAGCCTGC	60.365	66.667	0.00	0.00	41.35	4.85
1311	1679	3.478274	CCTCTCCCTGAGCCTGCC	61.478	72.222	0.00	0.00	41.35	4.85
1347	1718	1.376249	AACCACCACCATTTCCCCCT	61.376	55.000	0.00	0.00	0.00	4.79
1351	1722	2.516277	CCACCACCATTTCCCCCTATTA	59.484	50.000	0.00	0.00	0.00	0.98
1357	1728	2.314852	CCATTTCCCCCTATTATCCCCC	59.685	54.545	0.00	0.00	0.00	5.40
1622	2001	3.547513	GAGGGATAAGGCCGCCGT	61.548	66.667	3.05	2.81	0.00	5.68
1709	2088	0.955178	GAGGCGCTCTACATGCTAGA	59.045	55.000	7.64	0.00	0.00	2.43
1746	2125	4.379243	AGCCTCGTCCAAGCCGTG	62.379	66.667	0.00	0.00	0.00	4.94
1984	2363	1.956629	ATCCGGCGACACGAGGAAAT	61.957	55.000	9.30	0.00	38.27	2.17
2081	2460	4.072131	GAGGACTACATGCAAAACCTCAA	58.928	43.478	16.30	0.00	41.12	3.02
2198	2577	3.348554	ATCAGGCGGCCTTCATGCA	62.349	57.895	21.26	0.00	0.00	3.96
2251	2631	2.281692	TCGACCACGAGTTCCCGA	60.282	61.111	0.00	0.00	43.81	5.14
2326	2706	2.600769	AGGACGAGGTCGCCAACT	60.601	61.111	13.06	0.00	44.43	3.16
2330	2710	0.243095	GACGAGGTCGCCAACTAAGT	59.757	55.000	0.00	0.00	44.43	2.24
2404	2785	1.229428	CGAGGACAAGCTTCTTTGCA	58.771	50.000	0.00	0.00	34.99	4.08
2460	2841	1.514873	CGCCGAGCAAAAGCATTCC	60.515	57.895	0.00	0.00	0.00	3.01
2468	2849	4.129380	GAGCAAAAGCATTCCACCTTTTT	58.871	39.130	0.00	0.00	38.74	1.94
2511	2892	0.798776	ATGAGCGCAAGAAGTTTCCG	59.201	50.000	11.47	0.00	43.02	4.30
2551	2932	2.124695	GCGGGTGGGTCTCCATTC	60.125	66.667	0.00	0.00	46.09	2.67
2559	2940	1.602237	GGTCTCCATTCCCAAGCGA	59.398	57.895	0.00	0.00	0.00	4.93
2613	2994	2.032681	GCCACCCTTGAGAGCGTT	59.967	61.111	0.00	0.00	0.00	4.84
2666	3048	4.517285	CAAGACATGGTATGGTAGCAAGT	58.483	43.478	0.00	0.00	40.29	3.16
2691	3073	2.086869	CGCCCTCTTTTGTGTCATCAT	58.913	47.619	0.00	0.00	0.00	2.45
2860	3245	0.440371	GAAGAGAAGTTCAAGGCGCG	59.560	55.000	0.00	0.00	0.00	6.86
2950	3342	1.454539	CGTGGGGGAAGACCAACTT	59.545	57.895	0.00	0.00	42.91	2.66
3013	3405	2.742372	AAGCGTGGACGGCATGAC	60.742	61.111	0.00	0.00	40.23	3.06
3045	3437	1.000270	TCAAGAGAGGAGGAGCGCT	60.000	57.895	11.27	11.27	0.00	5.92
3262	3654	4.849813	TCATGAAGGTGGATCTCAACAT	57.150	40.909	0.00	0.00	34.94	2.71
3312	3704	2.101582	GAGAAGATGTAGGCCGACATGT	59.898	50.000	32.88	26.83	40.18	3.21
3327	3719	2.792674	GACATGTTCAAGTTCGACGACA	59.207	45.455	0.00	0.00	0.00	4.35
3328	3720	3.191669	ACATGTTCAAGTTCGACGACAA	58.808	40.909	0.00	0.00	0.00	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
99	100	6.314784	CGTACCTCTTCATTTCCATGTTTTC	58.685	40.000	0.00	0.00	0.00	2.29
343	572	9.081204	CAGAACATGAATATAATGGGGAAATGA	57.919	33.333	0.00	0.00	0.00	2.57
396	627	3.374220	AGATGTGGTTTTGCACATGTG	57.626	42.857	21.83	21.83	41.53	3.21
628	942	0.460987	GAGAGTCTGGGATTGGCACG	60.461	60.000	0.00	0.00	0.00	5.34
650	964	0.467804	GTGGTGGTTTTGGCCATTGT	59.532	50.000	6.09	0.00	41.08	2.71
708	1028	0.179150	CTACTCTGCTTCTTCGCGCT	60.179	55.000	5.56	0.00	0.00	5.92
712	1032	3.375610	TCTGCTACTACTCTGCTTCTTCG	59.624	47.826	0.00	0.00	0.00	3.79
748	1068	2.046285	CCCATGAAACCGGGTGCTC	61.046	63.158	6.32	1.08	37.70	4.26
762	1082	1.520600	GCGGACGTTGGTTTTCCCAT	61.521	55.000	0.00	0.00	44.74	4.00
813	1133	4.220163	GGGACGAGGTTATATACTGGAAGG	59.780	50.000	0.00	0.00	39.30	3.46
815	1135	4.806892	TGGGACGAGGTTATATACTGGAA	58.193	43.478	0.00	0.00	0.00	3.53
818	1147	3.056749	GGCTGGGACGAGGTTATATACTG	60.057	52.174	0.00	0.00	0.00	2.74
819	1148	3.163467	GGCTGGGACGAGGTTATATACT	58.837	50.000	0.00	0.00	0.00	2.12
842	1171	0.103937	CGTTGATGAGAGGGAGAGCC	59.896	60.000	0.00	0.00	0.00	4.70
861	1197	0.108945	GAAGGCTGGTTGATGCTTGC	60.109	55.000	0.00	0.00	0.00	4.01
884	1220	4.916983	TTTCTGGTTGTGAATGAAGTGG	57.083	40.909	0.00	0.00	0.00	4.00
887	1223	5.156355	CGGAATTTCTGGTTGTGAATGAAG	58.844	41.667	0.00	0.00	0.00	3.02
899	1235	2.673368	GTGTAGAGTGCGGAATTTCTGG	59.327	50.000	7.33	0.00	0.00	3.86
921	1264	1.736681	GGTAGAGTAGCTCGTTGTCGT	59.263	52.381	0.00	0.00	35.36	4.34
941	1284	3.030291	ACTAGCTGATGGGTGAAGAGAG	58.970	50.000	0.00	0.00	0.00	3.20
942	1285	3.107402	ACTAGCTGATGGGTGAAGAGA	57.893	47.619	0.00	0.00	0.00	3.10
950	1293	5.543507	ATTCTGAAGTACTAGCTGATGGG	57.456	43.478	0.00	0.00	0.00	4.00
951	1294	7.044181	TGAAATTCTGAAGTACTAGCTGATGG	58.956	38.462	0.00	0.00	0.00	3.51
957	1300	6.311690	GTGGTCTGAAATTCTGAAGTACTAGC	59.688	42.308	4.14	0.00	0.00	3.42
959	1302	6.269077	TGGTGGTCTGAAATTCTGAAGTACTA	59.731	38.462	4.14	0.71	0.00	1.82
960	1303	5.071788	TGGTGGTCTGAAATTCTGAAGTACT	59.928	40.000	4.14	0.00	0.00	2.73
961	1304	5.305585	TGGTGGTCTGAAATTCTGAAGTAC	58.694	41.667	4.14	4.57	0.00	2.73
971	1314	1.609208	GTGTGCTGGTGGTCTGAAAT	58.391	50.000	0.00	0.00	0.00	2.17
991	1349	1.070445	CACCGGCCATGATCTCTCC	59.930	63.158	0.00	0.00	0.00	3.71
1085	1443	3.515502	TGCTCTTAGTGCATAGTTCCAGT	59.484	43.478	4.76	0.00	35.31	4.00
1095	1453	3.503363	CCATTGAAGTTGCTCTTAGTGCA	59.497	43.478	4.76	4.76	36.40	4.57
1151	1509	3.799755	GCTTTTGTCCGCGCCGAT	61.800	61.111	0.00	0.00	0.00	4.18
1174	1532	3.776347	TTTGGGTCGGCGCTTTGGA	62.776	57.895	7.64	0.00	0.00	3.53
1199	1557	1.863491	CGGACGAAAAATGGACGCA	59.137	52.632	0.00	0.00	0.00	5.24
1238	1596	2.490115	ACGCAAATCCGGCTCAAAATTA	59.510	40.909	0.00	0.00	0.00	1.40
1329	1697	0.478789	TAGGGGGAAATGGTGGTGGT	60.479	55.000	0.00	0.00	0.00	4.16
1347	1718	3.117813	CGGGAGTGTTTTGGGGGATAATA	60.118	47.826	0.00	0.00	0.00	0.98
1351	1722	1.382629	CGGGAGTGTTTTGGGGGAT	59.617	57.895	0.00	0.00	0.00	3.85
1357	1728	4.038080	GCGGGCGGGAGTGTTTTG	62.038	66.667	0.00	0.00	0.00	2.44
1472	1850	3.984732	GCCTTTGCTGGAGGGGGT	61.985	66.667	3.38	0.00	34.75	4.95
1481	1859	1.744014	CACAAGGCTTGCCTTTGCT	59.256	52.632	26.45	7.09	38.71	3.91
1483	1861	4.348857	GCACAAGGCTTGCCTTTG	57.651	55.556	26.45	21.78	40.25	2.77
1517	1895	2.049433	CTTCGTCTTGGTCGCGGT	60.049	61.111	6.13	0.00	0.00	5.68
1529	1907	2.430921	CGTCAGCGCCTTCTTCGT	60.431	61.111	2.29	0.00	0.00	3.85
1642	2021	2.972505	CAACTCCTGTTGCGCGGT	60.973	61.111	8.83	0.00	45.57	5.68
1650	2029	1.227853	GGCGTTGGTCAACTCCTGT	60.228	57.895	13.73	0.00	41.61	4.00
1860	2239	3.068691	CACTCCCCGAAGAGGCGA	61.069	66.667	6.61	0.00	38.26	5.54
1948	2327	2.298158	GATGACGAGCCACCGACCAT	62.298	60.000	0.00	0.00	32.66	3.55
1973	2352	3.788766	GCGCGCATTTCCTCGTGT	61.789	61.111	29.10	0.00	38.34	4.49
2081	2460	4.681978	GCGCACCACCCTCGAAGT	62.682	66.667	0.30	0.00	0.00	3.01
2113	2492	1.135199	GCTTTGTGTCTCGTCGGGATA	60.135	52.381	0.00	0.00	0.00	2.59
2198	2577	2.429927	TCGATGCCGACCTGATCAT	58.570	52.632	0.00	0.00	40.30	2.45
2251	2631	0.254178	TCCTCTAGCCCGTAGTCGTT	59.746	55.000	0.00	0.00	35.01	3.85
2317	2697	3.471399	GGCGACTTAGTTGGCGAC	58.529	61.111	10.43	0.00	32.98	5.19
2326	2706	1.669999	GGCTTAGGACCGGCGACTTA	61.670	60.000	9.30	0.00	0.00	2.24
2383	2763	1.884235	CAAAGAAGCTTGTCCTCGGT	58.116	50.000	2.10	0.00	0.00	4.69
2404	2785	1.202758	TCCAATGTCTCGCCAACACTT	60.203	47.619	0.00	0.00	0.00	3.16
2460	2841	1.400142	TGCACACGAGTCAAAAAGGTG	59.600	47.619	0.00	0.00	34.87	4.00
2511	2892	2.668279	CGTGCTCACAAATTGGTAAGGC	60.668	50.000	0.00	0.00	0.00	4.35
2551	2932	1.987807	ATCACCCTCCATCGCTTGGG	61.988	60.000	4.63	0.00	46.45	4.12
2559	2940	2.240667	CTCTTGTTGGATCACCCTCCAT	59.759	50.000	0.00	0.00	44.66	3.41
2658	3040	0.810426	GAGGGCGGCTTACTTGCTAC	60.810	60.000	9.56	0.00	0.00	3.58
2666	3048	0.109723	ACACAAAAGAGGGCGGCTTA	59.890	50.000	9.56	0.00	0.00	3.09
2691	3073	7.626240	GCAAATGAAGACGTAAAAGGATGATCA	60.626	37.037	0.00	0.00	0.00	2.92
2753	3138	4.081476	GCCTCCAAAGTTTGAAATGCCTAT	60.081	41.667	17.33	0.00	0.00	2.57
2766	3151	2.683211	ACCTTGAATGCCTCCAAAGT	57.317	45.000	0.00	0.00	0.00	2.66
2860	3245	1.944778	GCCTTGAGTGCGGCATATC	59.055	57.895	5.72	8.58	45.59	1.63
2898	3283	1.342374	GCCCTTCCCAACATCCTTCAT	60.342	52.381	0.00	0.00	0.00	2.57
2901	3286	1.000896	CGCCCTTCCCAACATCCTT	60.001	57.895	0.00	0.00	0.00	3.36
2950	3342	1.273606	CTCGCTTGTCCTCCTTCTTGA	59.726	52.381	0.00	0.00	0.00	3.02
3013	3405	5.358442	TCCTCTCTTGAGTCCTTCTTATTCG	59.642	44.000	0.00	0.00	38.61	3.34
3045	3437	2.668212	CTCCGCCTTGAAACGCCA	60.668	61.111	0.00	0.00	0.00	5.69
3077	3469	3.591789	CCTCCTCCTTTGGATCTCCATA	58.408	50.000	0.00	0.00	46.97	2.74
3188	3580	3.399330	CACTTCTTTCGCCTTGGTCTTA	58.601	45.455	0.00	0.00	0.00	2.10
3262	3654	1.289066	CTCTTCCTTGGCGACACGA	59.711	57.895	0.00	0.00	42.67	4.35

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.