Multiple sequence alignment - TraesCS2A01G531300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G531300 chr2A 100.000 2347 0 0 1 2347 748527076 748529422 0.000000e+00 4335.0
1 TraesCS2A01G531300 chr2A 79.640 889 125 32 3 864 748536654 748537513 2.600000e-164 588.0
2 TraesCS2A01G531300 chr2A 81.421 732 91 28 1329 2034 748549317 748550029 7.330000e-155 556.0
3 TraesCS2A01G531300 chr2A 82.786 639 79 19 248 864 748545466 748546095 2.050000e-150 542.0
4 TraesCS2A01G531300 chr2A 80.662 755 83 41 1453 2159 748541205 748541944 5.740000e-146 527.0
5 TraesCS2A01G531300 chr2A 79.301 744 78 35 1327 2031 748533738 748534444 3.560000e-123 451.0
6 TraesCS2A01G531300 chr2A 91.950 323 24 1 945 1265 748537800 748538122 3.560000e-123 451.0
7 TraesCS2A01G531300 chr2A 89.189 259 28 0 1012 1270 748542339 748542597 8.090000e-85 324.0
8 TraesCS2A01G531300 chr2A 91.566 83 7 0 2157 2239 748534676 748534758 5.300000e-22 115.0
9 TraesCS2A01G531300 chr2A 95.588 68 3 0 4 71 748544837 748544904 2.470000e-20 110.0
10 TraesCS2A01G531300 chr2A 79.720 143 12 8 2033 2159 748534471 748534612 1.160000e-13 87.9
11 TraesCS2A01G531300 chr2D 87.430 716 63 22 1 694 617993970 617994680 0.000000e+00 798.0
12 TraesCS2A01G531300 chr2D 92.405 474 29 5 1330 1800 617996079 617996548 0.000000e+00 669.0
13 TraesCS2A01G531300 chr2D 95.157 351 16 1 1810 2159 618003327 618003677 9.480000e-154 553.0
14 TraesCS2A01G531300 chr2D 85.321 436 45 6 1327 1750 617995432 617995860 1.290000e-117 433.0
15 TraesCS2A01G531300 chr2D 90.278 288 24 3 982 1265 617957680 617957967 7.920000e-100 374.0
16 TraesCS2A01G531300 chr2D 88.316 291 32 1 982 1270 617973031 617973321 4.800000e-92 348.0
17 TraesCS2A01G531300 chr2D 86.716 271 30 1 1000 1270 618060726 618060990 1.760000e-76 296.0
18 TraesCS2A01G531300 chr2D 81.534 352 45 10 1467 1800 617959322 617959671 2.970000e-69 272.0
19 TraesCS2A01G531300 chr2D 94.118 51 2 1 1434 1483 617983115 617983165 2.500000e-10 76.8
20 TraesCS2A01G531300 chr2B 84.615 663 74 19 1395 2034 753987316 753987973 3.290000e-178 634.0
21 TraesCS2A01G531300 chr2B 88.595 491 50 6 1 488 753985592 753986079 2.010000e-165 592.0
22 TraesCS2A01G531300 chr2B 81.383 752 77 23 1327 2029 754001548 754002285 2.640000e-154 555.0
23 TraesCS2A01G531300 chr2B 87.474 479 45 9 140 606 754000343 754000818 2.650000e-149 538.0
24 TraesCS2A01G531300 chr2B 90.000 320 30 1 953 1270 754001246 754001565 1.680000e-111 412.0
25 TraesCS2A01G531300 chr2B 89.308 318 34 0 953 1270 753986848 753987165 1.310000e-107 399.0
26 TraesCS2A01G531300 chr2B 88.070 285 33 1 982 1265 753952457 753952741 1.040000e-88 337.0
27 TraesCS2A01G531300 chr2B 88.686 274 28 3 992 1265 753974082 753974352 4.830000e-87 331.0
28 TraesCS2A01G531300 chr2B 85.782 211 7 5 2157 2345 753988212 753988421 3.950000e-48 202.0
29 TraesCS2A01G531300 chr2B 90.000 100 7 3 2027 2126 754010475 754010571 2.450000e-25 126.0
30 TraesCS2A01G531300 chr2B 92.857 84 6 0 1327 1410 753952729 753952812 3.170000e-24 122.0
31 TraesCS2A01G531300 chr2B 86.301 73 7 2 483 554 753986290 753986360 2.500000e-10 76.8
32 TraesCS2A01G531300 chr2B 100.000 36 0 0 1 36 753999965 754000000 1.510000e-07 67.6
33 TraesCS2A01G531300 chr7A 94.118 68 2 2 1266 1331 611498561 611498494 4.130000e-18 102.0
34 TraesCS2A01G531300 chr7A 95.238 63 2 1 1266 1327 19014755 19014817 5.340000e-17 99.0
35 TraesCS2A01G531300 chr4A 95.312 64 1 2 1266 1327 208937833 208937896 1.480000e-17 100.0
36 TraesCS2A01G531300 chr3A 95.312 64 1 2 1266 1327 658612327 658612264 1.480000e-17 100.0
37 TraesCS2A01G531300 chr3A 95.238 63 2 1 1266 1327 658617376 658617314 5.340000e-17 99.0
38 TraesCS2A01G531300 chr6B 95.238 63 2 1 1269 1331 66704514 66704453 5.340000e-17 99.0
39 TraesCS2A01G531300 chr6A 95.238 63 2 1 1269 1330 597784345 597784283 5.340000e-17 99.0
40 TraesCS2A01G531300 chr5A 95.161 62 2 1 1266 1326 657240768 657240707 1.920000e-16 97.1
41 TraesCS2A01G531300 chr5A 95.161 62 2 1 1266 1326 706593416 706593477 1.920000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G531300 chr2A 748527076 748529422 2346 False 4335.000000 4335 100.000000 1 2347 1 chr2A.!!$F1 2346
1 TraesCS2A01G531300 chr2A 748533738 748550029 16291 False 375.190000 588 85.182300 3 2239 10 chr2A.!!$F2 2236
2 TraesCS2A01G531300 chr2D 617993970 617996548 2578 False 633.333333 798 88.385333 1 1800 3 chr2D.!!$F6 1799
3 TraesCS2A01G531300 chr2D 617957680 617959671 1991 False 323.000000 374 85.906000 982 1800 2 chr2D.!!$F5 818
4 TraesCS2A01G531300 chr2B 753999965 754002285 2320 False 393.150000 555 89.714250 1 2029 4 chr2B.!!$F5 2028
5 TraesCS2A01G531300 chr2B 753985592 753988421 2829 False 380.760000 634 86.920200 1 2345 5 chr2B.!!$F4 2344

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 4218 1.136085 GTGCTCGCAAGTCGCAATAAA 60.136 47.619 0.0 0.0 43.71 1.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 18481 0.312416 CGTCGGATGGAGGAGTCATC 59.688 60.0 0.0 0.0 40.02 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 2952 4.330944 TGTCTTACCATCAAGTTGACGT 57.669 40.909 7.96 9.94 0.00 4.34
111 3027 9.482627 GATTCTCCAACTATCGTCAAATCTTAT 57.517 33.333 0.00 0.00 0.00 1.73
122 3038 5.763204 TCGTCAAATCTTATATTTGGCTCCC 59.237 40.000 11.85 0.00 40.37 4.30
133 3057 3.817709 TTTGGCTCCCAACTCAAAAAG 57.182 42.857 0.00 0.00 43.82 2.27
180 3335 5.923204 ACATTTAGATTTGGTGTTTTGCCA 58.077 33.333 0.00 0.00 0.00 4.92
181 3337 6.532826 ACATTTAGATTTGGTGTTTTGCCAT 58.467 32.000 0.00 0.00 35.71 4.40
203 3359 7.322664 CCATATTGAAAGTGGTTTTGCATACT 58.677 34.615 0.00 0.00 0.00 2.12
391 3555 5.172951 TCAAAATGAACGAAATTGCGAACAG 59.827 36.000 14.14 1.03 34.83 3.16
540 3925 8.836268 TCCAATTTCAAAATTCAGGAAATCTG 57.164 30.769 10.50 10.46 39.58 2.90
618 4013 9.474920 CTCTTCCAATTTTATTTGCACACTTAA 57.525 29.630 0.00 0.00 0.00 1.85
619 4014 9.255304 TCTTCCAATTTTATTTGCACACTTAAC 57.745 29.630 0.00 0.00 0.00 2.01
659 4057 4.156008 CCACCTCTATGGCAACTACAAAAC 59.844 45.833 0.00 0.00 40.22 2.43
662 4060 5.221843 ACCTCTATGGCAACTACAAAACTGA 60.222 40.000 0.00 0.00 40.22 3.41
696 4125 5.408604 AGCAGTAACTTGGACAATTCTAACG 59.591 40.000 0.00 0.00 0.00 3.18
701 4130 9.328845 AGTAACTTGGACAATTCTAACGTTTTA 57.671 29.630 5.91 0.00 0.00 1.52
702 4131 9.590088 GTAACTTGGACAATTCTAACGTTTTAG 57.410 33.333 5.91 0.00 36.73 1.85
703 4132 6.665465 ACTTGGACAATTCTAACGTTTTAGC 58.335 36.000 5.91 0.00 35.53 3.09
704 4133 6.261381 ACTTGGACAATTCTAACGTTTTAGCA 59.739 34.615 5.91 0.00 35.53 3.49
705 4134 6.811253 TGGACAATTCTAACGTTTTAGCAT 57.189 33.333 5.91 0.00 35.53 3.79
706 4135 7.908827 TGGACAATTCTAACGTTTTAGCATA 57.091 32.000 5.91 0.00 35.53 3.14
707 4136 7.970384 TGGACAATTCTAACGTTTTAGCATAG 58.030 34.615 5.91 0.00 35.53 2.23
709 4138 8.662141 GGACAATTCTAACGTTTTAGCATAGAA 58.338 33.333 5.91 8.02 37.11 2.10
710 4139 9.474249 GACAATTCTAACGTTTTAGCATAGAAC 57.526 33.333 5.91 0.00 35.94 3.01
711 4140 9.216117 ACAATTCTAACGTTTTAGCATAGAACT 57.784 29.630 5.91 0.00 35.94 3.01
712 4141 9.478019 CAATTCTAACGTTTTAGCATAGAACTG 57.522 33.333 5.91 3.94 35.94 3.16
713 4142 8.773404 ATTCTAACGTTTTAGCATAGAACTGT 57.227 30.769 5.91 0.00 35.94 3.55
714 4143 7.807687 TCTAACGTTTTAGCATAGAACTGTC 57.192 36.000 5.91 0.00 33.87 3.51
715 4144 5.511088 AACGTTTTAGCATAGAACTGTCG 57.489 39.130 0.00 0.00 33.87 4.35
736 4175 6.170506 GTCGGTATTTCCATGGATGCTATTA 58.829 40.000 17.06 0.00 35.57 0.98
740 4179 7.492669 CGGTATTTCCATGGATGCTATTACTAG 59.507 40.741 17.06 6.57 35.57 2.57
741 4180 8.322091 GGTATTTCCATGGATGCTATTACTAGT 58.678 37.037 17.06 0.00 35.97 2.57
742 4181 9.372369 GTATTTCCATGGATGCTATTACTAGTC 57.628 37.037 17.06 0.00 0.00 2.59
743 4182 7.618019 TTTCCATGGATGCTATTACTAGTCT 57.382 36.000 17.06 0.00 0.00 3.24
751 4190 7.230913 TGGATGCTATTACTAGTCTAGACAACC 59.769 40.741 24.44 15.93 0.00 3.77
761 4200 4.307432 AGTCTAGACAACCAATGTTCGTG 58.693 43.478 24.44 0.00 44.12 4.35
779 4218 1.136085 GTGCTCGCAAGTCGCAATAAA 60.136 47.619 0.00 0.00 43.71 1.40
786 4225 5.398169 TCGCAAGTCGCAATAAAATTTGAT 58.602 33.333 0.00 0.00 42.60 2.57
794 4233 7.062605 AGTCGCAATAAAATTTGATTCTGCTTG 59.937 33.333 9.53 0.00 0.00 4.01
798 4237 7.461107 CAATAAAATTTGATTCTGCTTGCTGG 58.539 34.615 0.00 0.00 0.00 4.85
801 4240 3.861276 TTTGATTCTGCTTGCTGGATG 57.139 42.857 0.00 0.00 0.00 3.51
804 4243 2.490509 TGATTCTGCTTGCTGGATGTTG 59.509 45.455 0.00 0.00 0.00 3.33
805 4244 1.250328 TTCTGCTTGCTGGATGTTGG 58.750 50.000 0.00 0.00 0.00 3.77
821 4260 5.764686 GGATGTTGGCACACATTATCTATCA 59.235 40.000 13.80 0.00 39.29 2.15
828 4295 6.484308 TGGCACACATTATCTATCAGTCATTG 59.516 38.462 0.00 0.00 0.00 2.82
841 4310 5.604758 TCAGTCATTGATCTTACCTCTGG 57.395 43.478 0.00 0.00 0.00 3.86
853 4322 2.348998 CTCTGGCGGCTTGTTCCT 59.651 61.111 11.43 0.00 0.00 3.36
864 4333 2.420687 GGCTTGTTCCTATCCCAGACTG 60.421 54.545 0.00 0.00 0.00 3.51
867 4336 4.680975 GCTTGTTCCTATCCCAGACTGTAC 60.681 50.000 0.93 0.00 0.00 2.90
869 4338 3.245839 TGTTCCTATCCCAGACTGTACCA 60.246 47.826 0.93 0.00 0.00 3.25
870 4339 3.769189 TCCTATCCCAGACTGTACCAA 57.231 47.619 0.93 0.00 0.00 3.67
871 4340 3.371965 TCCTATCCCAGACTGTACCAAC 58.628 50.000 0.93 0.00 0.00 3.77
873 4342 3.118738 CCTATCCCAGACTGTACCAACAC 60.119 52.174 0.93 0.00 0.00 3.32
874 4343 2.097110 TCCCAGACTGTACCAACACT 57.903 50.000 0.93 0.00 0.00 3.55
875 4344 1.968493 TCCCAGACTGTACCAACACTC 59.032 52.381 0.93 0.00 0.00 3.51
876 4345 1.971357 CCCAGACTGTACCAACACTCT 59.029 52.381 0.93 0.00 31.30 3.24
877 4346 3.162666 CCCAGACTGTACCAACACTCTA 58.837 50.000 0.93 0.00 30.42 2.43
878 4347 3.056749 CCCAGACTGTACCAACACTCTAC 60.057 52.174 0.93 0.00 30.42 2.59
880 4349 4.547532 CAGACTGTACCAACACTCTACAC 58.452 47.826 0.00 0.00 30.42 2.90
881 4350 4.278669 CAGACTGTACCAACACTCTACACT 59.721 45.833 0.00 0.00 30.42 3.55
883 4352 4.471548 ACTGTACCAACACTCTACACTCT 58.528 43.478 0.00 0.00 0.00 3.24
886 4355 5.379187 TGTACCAACACTCTACACTCTACA 58.621 41.667 0.00 0.00 0.00 2.74
887 4356 4.850347 ACCAACACTCTACACTCTACAC 57.150 45.455 0.00 0.00 0.00 2.90
888 4357 4.471548 ACCAACACTCTACACTCTACACT 58.528 43.478 0.00 0.00 0.00 3.55
889 4358 4.519730 ACCAACACTCTACACTCTACACTC 59.480 45.833 0.00 0.00 0.00 3.51
891 4360 5.938710 CCAACACTCTACACTCTACACTCTA 59.061 44.000 0.00 0.00 0.00 2.43
895 4364 6.167685 CACTCTACACTCTACACTCTACACT 58.832 44.000 0.00 0.00 0.00 3.55
896 4365 6.651643 CACTCTACACTCTACACTCTACACTT 59.348 42.308 0.00 0.00 0.00 3.16
898 4367 6.531923 TCTACACTCTACACTCTACACTTGT 58.468 40.000 0.00 0.00 0.00 3.16
899 4368 6.996879 TCTACACTCTACACTCTACACTTGTT 59.003 38.462 0.00 0.00 0.00 2.83
900 4369 6.074544 ACACTCTACACTCTACACTTGTTC 57.925 41.667 0.00 0.00 0.00 3.18
902 4371 6.321690 ACACTCTACACTCTACACTTGTTCTT 59.678 38.462 0.00 0.00 0.00 2.52
904 4373 8.516234 CACTCTACACTCTACACTTGTTCTTAT 58.484 37.037 0.00 0.00 0.00 1.73
954 4656 6.757947 ACAACTAGCTACTCTACTACTCTTCG 59.242 42.308 0.00 0.00 0.00 3.79
969 4671 3.193691 ACTCTTCGGTCATCACCTACTTG 59.806 47.826 0.00 0.00 41.17 3.16
1010 4714 1.070445 GAGAGATCATGGCGGGTGG 59.930 63.158 0.00 0.00 0.00 4.61
1071 4775 2.347490 GAGGCGCTCAAGGACCAA 59.653 61.111 7.64 0.00 0.00 3.67
1110 4814 3.181458 GGAACTACGCCCTCAAATCCATA 60.181 47.826 0.00 0.00 0.00 2.74
1272 5032 0.817654 GCTGTTGGGGTCTAAATGGC 59.182 55.000 0.00 0.00 0.00 4.40
1278 5038 1.142060 TGGGGTCTAAATGGCCGTATG 59.858 52.381 0.00 0.00 42.62 2.39
1279 5039 1.235724 GGGTCTAAATGGCCGTATGC 58.764 55.000 0.00 0.00 42.62 3.14
1281 5041 2.504367 GGTCTAAATGGCCGTATGCAT 58.496 47.619 3.79 3.79 43.89 3.96
1282 5042 2.484264 GGTCTAAATGGCCGTATGCATC 59.516 50.000 0.19 0.00 43.89 3.91
1283 5043 3.403038 GTCTAAATGGCCGTATGCATCT 58.597 45.455 0.19 0.00 43.89 2.90
1284 5044 3.815401 GTCTAAATGGCCGTATGCATCTT 59.185 43.478 0.19 0.00 43.89 2.40
1286 5046 3.715628 AAATGGCCGTATGCATCTTTC 57.284 42.857 0.19 0.00 43.89 2.62
1287 5047 2.645838 ATGGCCGTATGCATCTTTCT 57.354 45.000 0.19 0.00 43.89 2.52
1291 5051 3.814842 TGGCCGTATGCATCTTTCTAATG 59.185 43.478 0.19 0.00 43.89 1.90
1298 5058 3.622627 GCATCTTTCTAATGCAGAGGC 57.377 47.619 3.35 0.00 46.93 4.70
1299 5059 2.292845 GCATCTTTCTAATGCAGAGGCC 59.707 50.000 0.00 0.00 46.93 5.19
1300 5060 2.315925 TCTTTCTAATGCAGAGGCCG 57.684 50.000 0.00 0.00 40.13 6.13
1301 5061 1.134401 TCTTTCTAATGCAGAGGCCGG 60.134 52.381 0.00 0.00 40.13 6.13
1302 5062 0.107214 TTTCTAATGCAGAGGCCGGG 60.107 55.000 2.18 0.00 40.13 5.73
1303 5063 1.983119 TTCTAATGCAGAGGCCGGGG 61.983 60.000 2.18 0.00 40.13 5.73
1304 5064 2.366301 TAATGCAGAGGCCGGGGA 60.366 61.111 2.18 0.00 40.13 4.81
1305 5065 1.983119 CTAATGCAGAGGCCGGGGAA 61.983 60.000 2.18 0.00 40.13 3.97
1307 5067 2.228841 AATGCAGAGGCCGGGGAATT 62.229 55.000 2.18 0.00 40.13 2.17
1308 5068 2.517166 GCAGAGGCCGGGGAATTC 60.517 66.667 2.18 0.00 0.00 2.17
1309 5069 2.193248 CAGAGGCCGGGGAATTCC 59.807 66.667 16.74 16.74 0.00 3.01
1340 5100 3.625314 AAAAAGCTGTTGGGGTCCA 57.375 47.368 0.00 0.00 0.00 4.02
1341 5101 1.872773 AAAAAGCTGTTGGGGTCCAA 58.127 45.000 0.00 0.00 41.69 3.53
1342 5102 1.872773 AAAAGCTGTTGGGGTCCAAA 58.127 45.000 0.45 0.00 45.73 3.28
1343 5103 2.101640 AAAGCTGTTGGGGTCCAAAT 57.898 45.000 0.45 0.00 45.73 2.32
1344 5104 2.101640 AAGCTGTTGGGGTCCAAATT 57.898 45.000 0.45 0.00 45.73 1.82
1345 5105 2.990740 AGCTGTTGGGGTCCAAATTA 57.009 45.000 0.45 0.00 45.73 1.40
1346 5106 2.807676 AGCTGTTGGGGTCCAAATTAG 58.192 47.619 0.45 2.55 45.73 1.73
1347 5107 1.204704 GCTGTTGGGGTCCAAATTAGC 59.795 52.381 12.59 12.59 45.73 3.09
1348 5108 2.524306 CTGTTGGGGTCCAAATTAGCA 58.476 47.619 0.45 0.00 45.73 3.49
1349 5109 2.493278 CTGTTGGGGTCCAAATTAGCAG 59.507 50.000 0.45 1.16 45.73 4.24
1350 5110 1.204704 GTTGGGGTCCAAATTAGCAGC 59.795 52.381 0.45 0.00 45.73 5.25
1351 5111 0.704076 TGGGGTCCAAATTAGCAGCT 59.296 50.000 0.00 0.00 0.00 4.24
1352 5112 1.106285 GGGGTCCAAATTAGCAGCTG 58.894 55.000 10.11 10.11 0.00 4.24
1353 5113 0.457443 GGGTCCAAATTAGCAGCTGC 59.543 55.000 31.53 31.53 42.49 5.25
1406 5213 1.180456 TGCAACAACCATGGCCTGAG 61.180 55.000 18.86 12.25 0.00 3.35
1415 5222 0.107508 CATGGCCTGAGACCACGATT 60.108 55.000 3.32 0.00 40.82 3.34
1422 5229 4.379499 GGCCTGAGACCACGATTTAAAAAG 60.379 45.833 0.00 0.00 0.00 2.27
1489 9494 6.767423 ACCACGATGATGATGATGACAAATTA 59.233 34.615 0.00 0.00 0.00 1.40
1596 17868 4.436986 GGTTTCAGTTTACAGCTATTCCGC 60.437 45.833 0.00 0.00 0.00 5.54
1602 17874 5.631512 CAGTTTACAGCTATTCCGCTATCTC 59.368 44.000 0.00 0.00 38.41 2.75
1622 17894 2.203582 AACCCGGCCTTTTGGTCC 60.204 61.111 0.00 0.00 42.39 4.46
1719 18016 0.877071 GTGTCATCTGCAGGTGTTGG 59.123 55.000 25.82 0.80 0.00 3.77
1800 18107 4.214980 ACATTCAGTTTTGCTCGTTGAG 57.785 40.909 0.00 0.00 0.00 3.02
1801 18108 3.627577 ACATTCAGTTTTGCTCGTTGAGT 59.372 39.130 0.00 0.00 31.39 3.41
1803 18110 3.944422 TCAGTTTTGCTCGTTGAGTTC 57.056 42.857 0.00 0.00 31.39 3.01
1804 18111 3.266636 TCAGTTTTGCTCGTTGAGTTCA 58.733 40.909 0.00 0.00 31.39 3.18
1806 18113 3.006940 AGTTTTGCTCGTTGAGTTCACA 58.993 40.909 0.00 0.00 31.39 3.58
1808 18115 4.096382 AGTTTTGCTCGTTGAGTTCACATT 59.904 37.500 0.00 0.00 31.39 2.71
1810 18117 5.743026 TTTGCTCGTTGAGTTCACATTAA 57.257 34.783 0.00 0.00 31.39 1.40
1811 18118 5.743026 TTGCTCGTTGAGTTCACATTAAA 57.257 34.783 0.00 0.00 31.39 1.52
1814 18121 7.060600 TGCTCGTTGAGTTCACATTAAATAG 57.939 36.000 0.00 0.00 31.39 1.73
1816 18123 7.815549 TGCTCGTTGAGTTCACATTAAATAGTA 59.184 33.333 0.00 0.00 31.39 1.82
1861 18182 6.259608 CCTTACTATCTGCTGGTTTTCTGATG 59.740 42.308 0.00 0.00 0.00 3.07
1872 18195 5.605534 TGGTTTTCTGATGAGAGCTATAGC 58.394 41.667 17.33 17.33 42.49 2.97
1889 18212 0.892814 AGCAAGAGCCAAGAGCCAAC 60.893 55.000 0.00 0.00 45.47 3.77
1902 18226 3.763671 CCAACAAGGCAGGTCACC 58.236 61.111 0.00 0.00 0.00 4.02
1918 18242 5.066764 CAGGTCACCCGTTTTTCTTTCTAAA 59.933 40.000 0.00 0.00 35.12 1.85
1942 18266 1.474077 CCTAGGGTCATGCAAGCAAAC 59.526 52.381 0.00 0.58 0.00 2.93
1943 18267 2.440409 CTAGGGTCATGCAAGCAAACT 58.560 47.619 0.00 0.00 0.00 2.66
2011 18336 5.931724 CACAAGTTTTTCTTTTGAACCAGGT 59.068 36.000 0.00 0.00 36.32 4.00
2023 18348 1.982958 GAACCAGGTTAACCCCTCTCA 59.017 52.381 21.30 0.00 36.42 3.27
2040 18404 6.240002 CCCCTCTCAATTAATAGCAGTACCAT 60.240 42.308 0.00 0.00 0.00 3.55
2054 18418 4.518970 GCAGTACCATGAGTTTCTTGGAAA 59.481 41.667 15.44 3.44 42.46 3.13
2057 18421 7.094377 GCAGTACCATGAGTTTCTTGGAAATAA 60.094 37.037 15.44 0.00 42.46 1.40
2106 18470 4.796038 AATCAAGATGTTTTGCCTGAGG 57.204 40.909 0.00 0.00 0.00 3.86
2116 18480 3.807538 GCCTGAGGCGCACACATG 61.808 66.667 8.16 4.25 39.62 3.21
2117 18481 3.129502 CCTGAGGCGCACACATGG 61.130 66.667 10.83 3.01 0.00 3.66
2118 18482 2.046988 CTGAGGCGCACACATGGA 60.047 61.111 10.83 0.00 0.00 3.41
2121 18485 1.450134 GAGGCGCACACATGGATGA 60.450 57.895 10.83 0.00 0.00 2.92
2124 18488 1.709147 GGCGCACACATGGATGACTC 61.709 60.000 10.83 0.00 0.00 3.36
2143 18507 0.736325 CCTCCATCCGACGTTGACAC 60.736 60.000 3.74 0.00 0.00 3.67
2155 18519 2.866010 TTGACACGAAGCGCACACG 61.866 57.895 11.47 14.66 44.07 4.49
2187 18646 2.801679 GTCGTAACGGACAAAACCATGA 59.198 45.455 0.00 0.00 36.91 3.07
2244 18703 1.683943 AGCAAGCAAAAGTGAGCTCA 58.316 45.000 13.74 13.74 40.90 4.26
2248 18729 1.208614 GCAAAAGTGAGCTCAGCCG 59.791 57.895 18.89 5.43 0.00 5.52
2265 18746 2.954611 GTCTGTTTTGCTCCGGCC 59.045 61.111 0.00 0.00 37.74 6.13
2270 18751 4.360405 TTTTGCTCCGGCCCTCCC 62.360 66.667 0.00 0.00 37.74 4.30
2282 18763 0.108472 GCCCTCCCGTATATAACCGC 60.108 60.000 0.00 0.00 0.00 5.68
2286 18767 1.808945 CTCCCGTATATAACCGCGTCT 59.191 52.381 4.92 0.00 0.00 4.18
2295 18776 1.180456 TAACCGCGTCTCACTCCCAA 61.180 55.000 4.92 0.00 0.00 4.12
2314 18795 4.081406 CCAATCTTCTTCCCATCAACACA 58.919 43.478 0.00 0.00 0.00 3.72
2327 18808 4.809958 CCATCAACACAAAACAAGCATCAA 59.190 37.500 0.00 0.00 0.00 2.57
2345 18826 5.049198 GCATCAATTCAGTGAGACAGTTCAA 60.049 40.000 0.00 0.00 0.00 2.69
2346 18827 6.600350 CATCAATTCAGTGAGACAGTTCAAG 58.400 40.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 3015 5.530915 TGGGAGCCAAATATAAGATTTGACG 59.469 40.000 10.30 0.00 40.42 4.35
111 3027 4.898861 ACTTTTTGAGTTGGGAGCCAAATA 59.101 37.500 0.00 0.00 45.73 1.40
122 3038 8.924691 TTGATTGACAAAGAACTTTTTGAGTTG 58.075 29.630 5.58 0.00 40.91 3.16
133 3057 9.515020 TGTTTTGATACTTGATTGACAAAGAAC 57.485 29.630 0.00 0.00 38.08 3.01
161 3316 7.901029 TCAATATGGCAAAACACCAAATCTAA 58.099 30.769 0.00 0.00 41.49 2.10
172 3327 6.859420 AAACCACTTTCAATATGGCAAAAC 57.141 33.333 0.00 0.00 36.96 2.43
180 3335 7.818930 CCAAGTATGCAAAACCACTTTCAATAT 59.181 33.333 0.00 0.00 0.00 1.28
181 3337 7.151308 CCAAGTATGCAAAACCACTTTCAATA 58.849 34.615 0.00 0.00 0.00 1.90
203 3359 4.097741 GCATTGTGGTGATTATGCTACCAA 59.902 41.667 0.00 0.00 45.30 3.67
381 3545 6.862209 TGAAATATAAAAGGCTGTTCGCAAT 58.138 32.000 0.00 0.00 41.67 3.56
478 3642 9.699410 AAATATTCAGGAACCATGTAATCTGAA 57.301 29.630 15.90 15.90 42.77 3.02
618 4013 2.289547 GTGGTTTTGCACATGTCGTAGT 59.710 45.455 0.00 0.00 0.00 2.73
619 4014 2.350388 GGTGGTTTTGCACATGTCGTAG 60.350 50.000 0.00 0.00 0.00 3.51
659 4057 7.550551 TCCAAGTTACTGCTTCATAGAAATCAG 59.449 37.037 0.00 0.00 0.00 2.90
662 4060 7.168219 TGTCCAAGTTACTGCTTCATAGAAAT 58.832 34.615 0.00 0.00 0.00 2.17
683 4081 8.193250 TCTATGCTAAAACGTTAGAATTGTCC 57.807 34.615 0.00 0.00 39.36 4.02
696 4125 7.535489 AATACCGACAGTTCTATGCTAAAAC 57.465 36.000 0.00 0.00 0.00 2.43
701 4130 4.161565 TGGAAATACCGACAGTTCTATGCT 59.838 41.667 0.00 0.00 42.61 3.79
702 4131 4.439057 TGGAAATACCGACAGTTCTATGC 58.561 43.478 0.00 0.00 42.61 3.14
703 4132 5.466728 CCATGGAAATACCGACAGTTCTATG 59.533 44.000 5.56 12.45 39.63 2.23
704 4133 5.365605 TCCATGGAAATACCGACAGTTCTAT 59.634 40.000 13.46 0.00 42.61 1.98
705 4134 4.712829 TCCATGGAAATACCGACAGTTCTA 59.287 41.667 13.46 0.00 42.61 2.10
706 4135 3.517901 TCCATGGAAATACCGACAGTTCT 59.482 43.478 13.46 0.00 42.61 3.01
707 4136 3.869065 TCCATGGAAATACCGACAGTTC 58.131 45.455 13.46 0.00 42.61 3.01
709 4138 3.808728 CATCCATGGAAATACCGACAGT 58.191 45.455 20.67 0.00 42.61 3.55
710 4139 2.549754 GCATCCATGGAAATACCGACAG 59.450 50.000 20.67 0.19 42.61 3.51
711 4140 2.172505 AGCATCCATGGAAATACCGACA 59.827 45.455 20.67 0.00 42.61 4.35
712 4141 2.851195 AGCATCCATGGAAATACCGAC 58.149 47.619 20.67 2.23 42.61 4.79
713 4142 4.908601 ATAGCATCCATGGAAATACCGA 57.091 40.909 20.67 0.89 42.61 4.69
714 4143 6.173339 AGTAATAGCATCCATGGAAATACCG 58.827 40.000 20.67 4.50 42.61 4.02
715 4144 8.322091 ACTAGTAATAGCATCCATGGAAATACC 58.678 37.037 20.67 5.49 39.54 2.73
736 4175 5.243283 ACGAACATTGGTTGTCTAGACTAGT 59.757 40.000 23.01 7.30 37.68 2.57
740 4179 3.120649 GCACGAACATTGGTTGTCTAGAC 60.121 47.826 16.32 16.32 37.68 2.59
741 4180 3.064207 GCACGAACATTGGTTGTCTAGA 58.936 45.455 0.00 0.00 37.68 2.43
742 4181 3.067106 AGCACGAACATTGGTTGTCTAG 58.933 45.455 0.00 0.00 37.68 2.43
743 4182 3.064207 GAGCACGAACATTGGTTGTCTA 58.936 45.455 0.00 0.00 37.68 2.59
751 4190 0.235665 ACTTGCGAGCACGAACATTG 59.764 50.000 8.01 0.00 42.66 2.82
779 4218 4.222145 ACATCCAGCAAGCAGAATCAAATT 59.778 37.500 0.00 0.00 0.00 1.82
786 4225 1.250328 CCAACATCCAGCAAGCAGAA 58.750 50.000 0.00 0.00 0.00 3.02
794 4233 0.604578 AATGTGTGCCAACATCCAGC 59.395 50.000 2.17 0.00 39.89 4.85
798 4237 6.484643 ACTGATAGATAATGTGTGCCAACATC 59.515 38.462 2.17 0.00 39.89 3.06
801 4240 5.817296 TGACTGATAGATAATGTGTGCCAAC 59.183 40.000 0.00 0.00 0.00 3.77
804 4243 6.707608 TCAATGACTGATAGATAATGTGTGCC 59.292 38.462 0.00 0.00 0.00 5.01
805 4244 7.719778 TCAATGACTGATAGATAATGTGTGC 57.280 36.000 0.00 0.00 0.00 4.57
821 4260 3.181471 CGCCAGAGGTAAGATCAATGACT 60.181 47.826 0.00 0.00 0.00 3.41
828 4295 0.466124 AAGCCGCCAGAGGTAAGATC 59.534 55.000 0.00 0.00 0.00 2.75
835 4304 1.899437 TAGGAACAAGCCGCCAGAGG 61.899 60.000 0.00 0.00 0.00 3.69
841 4310 0.815615 CTGGGATAGGAACAAGCCGC 60.816 60.000 0.00 0.00 0.00 6.53
853 4322 3.767673 GAGTGTTGGTACAGTCTGGGATA 59.232 47.826 4.53 0.00 46.64 2.59
864 4333 5.472820 AGTGTAGAGTGTAGAGTGTTGGTAC 59.527 44.000 0.00 0.00 0.00 3.34
867 4336 4.762765 AGAGTGTAGAGTGTAGAGTGTTGG 59.237 45.833 0.00 0.00 0.00 3.77
869 4338 6.427547 GTGTAGAGTGTAGAGTGTAGAGTGTT 59.572 42.308 0.00 0.00 0.00 3.32
870 4339 5.933463 GTGTAGAGTGTAGAGTGTAGAGTGT 59.067 44.000 0.00 0.00 0.00 3.55
871 4340 6.167685 AGTGTAGAGTGTAGAGTGTAGAGTG 58.832 44.000 0.00 0.00 0.00 3.51
873 4342 6.651643 ACAAGTGTAGAGTGTAGAGTGTAGAG 59.348 42.308 0.00 0.00 0.00 2.43
874 4343 6.531923 ACAAGTGTAGAGTGTAGAGTGTAGA 58.468 40.000 0.00 0.00 0.00 2.59
875 4344 6.804770 ACAAGTGTAGAGTGTAGAGTGTAG 57.195 41.667 0.00 0.00 0.00 2.74
876 4345 6.996879 AGAACAAGTGTAGAGTGTAGAGTGTA 59.003 38.462 0.00 0.00 0.00 2.90
877 4346 5.828859 AGAACAAGTGTAGAGTGTAGAGTGT 59.171 40.000 0.00 0.00 0.00 3.55
878 4347 6.320494 AGAACAAGTGTAGAGTGTAGAGTG 57.680 41.667 0.00 0.00 0.00 3.51
880 4349 9.562583 GAATAAGAACAAGTGTAGAGTGTAGAG 57.437 37.037 0.00 0.00 0.00 2.43
881 4350 8.521176 GGAATAAGAACAAGTGTAGAGTGTAGA 58.479 37.037 0.00 0.00 0.00 2.59
883 4352 7.040201 ACGGAATAAGAACAAGTGTAGAGTGTA 60.040 37.037 0.00 0.00 0.00 2.90
886 4355 6.342338 ACGGAATAAGAACAAGTGTAGAGT 57.658 37.500 0.00 0.00 0.00 3.24
887 4356 7.536855 AGTACGGAATAAGAACAAGTGTAGAG 58.463 38.462 0.00 0.00 0.00 2.43
888 4357 7.392673 AGAGTACGGAATAAGAACAAGTGTAGA 59.607 37.037 0.00 0.00 0.00 2.59
889 4358 7.536855 AGAGTACGGAATAAGAACAAGTGTAG 58.463 38.462 0.00 0.00 0.00 2.74
891 4360 6.342338 AGAGTACGGAATAAGAACAAGTGT 57.658 37.500 0.00 0.00 0.00 3.55
895 4364 7.392673 AGAGTGTAGAGTACGGAATAAGAACAA 59.607 37.037 0.00 0.00 0.00 2.83
896 4365 6.883217 AGAGTGTAGAGTACGGAATAAGAACA 59.117 38.462 0.00 0.00 0.00 3.18
898 4367 8.043113 TGTAGAGTGTAGAGTACGGAATAAGAA 58.957 37.037 0.00 0.00 0.00 2.52
899 4368 7.493971 GTGTAGAGTGTAGAGTACGGAATAAGA 59.506 40.741 0.00 0.00 0.00 2.10
900 4369 7.495279 AGTGTAGAGTGTAGAGTACGGAATAAG 59.505 40.741 0.00 0.00 0.00 1.73
902 4371 6.882656 AGTGTAGAGTGTAGAGTACGGAATA 58.117 40.000 0.00 0.00 0.00 1.75
904 4373 5.157940 AGTGTAGAGTGTAGAGTACGGAA 57.842 43.478 0.00 0.00 0.00 4.30
954 4656 4.810191 AACTCTCAAGTAGGTGATGACC 57.190 45.455 0.00 0.00 37.34 4.02
969 4671 2.872858 GTGTTGGTGGTCTGAAACTCTC 59.127 50.000 0.00 0.00 0.00 3.20
1010 4714 3.682292 ATCCAAGACGCCTTCGCCC 62.682 63.158 0.00 0.00 39.84 6.13
1166 4873 2.125350 CAGAGGTCGGAAGCTGCC 60.125 66.667 0.00 0.00 32.07 4.85
1279 5039 2.547211 CGGCCTCTGCATTAGAAAGATG 59.453 50.000 0.00 0.00 40.13 2.90
1281 5041 1.134401 CCGGCCTCTGCATTAGAAAGA 60.134 52.381 0.00 0.00 40.13 2.52
1282 5042 1.303309 CCGGCCTCTGCATTAGAAAG 58.697 55.000 0.00 0.00 40.13 2.62
1283 5043 0.107214 CCCGGCCTCTGCATTAGAAA 60.107 55.000 0.00 0.00 40.13 2.52
1284 5044 1.526887 CCCGGCCTCTGCATTAGAA 59.473 57.895 0.00 0.00 40.13 2.10
1286 5046 1.983119 TTCCCCGGCCTCTGCATTAG 61.983 60.000 0.00 0.00 40.13 1.73
1287 5047 1.352622 ATTCCCCGGCCTCTGCATTA 61.353 55.000 0.00 0.00 40.13 1.90
1291 5051 2.517166 GAATTCCCCGGCCTCTGC 60.517 66.667 0.00 0.00 0.00 4.26
1324 5084 2.101640 ATTTGGACCCCAACAGCTTT 57.898 45.000 0.00 0.00 43.82 3.51
1325 5085 2.101640 AATTTGGACCCCAACAGCTT 57.898 45.000 0.00 0.00 43.82 3.74
1326 5086 2.807676 CTAATTTGGACCCCAACAGCT 58.192 47.619 0.00 0.00 43.82 4.24
1327 5087 1.204704 GCTAATTTGGACCCCAACAGC 59.795 52.381 0.00 4.56 43.82 4.40
1328 5088 2.493278 CTGCTAATTTGGACCCCAACAG 59.507 50.000 0.00 0.00 43.82 3.16
1329 5089 2.524306 CTGCTAATTTGGACCCCAACA 58.476 47.619 0.00 0.00 43.82 3.33
1330 5090 1.204704 GCTGCTAATTTGGACCCCAAC 59.795 52.381 0.00 0.00 43.82 3.77
1331 5091 1.077005 AGCTGCTAATTTGGACCCCAA 59.923 47.619 0.00 0.00 42.29 4.12
1332 5092 0.704076 AGCTGCTAATTTGGACCCCA 59.296 50.000 0.00 0.00 0.00 4.96
1334 5094 0.457443 GCAGCTGCTAATTTGGACCC 59.543 55.000 31.33 0.00 38.21 4.46
1337 5097 2.517959 AGTTGCAGCTGCTAATTTGGA 58.482 42.857 36.61 13.65 42.66 3.53
1338 5098 3.308438 AAGTTGCAGCTGCTAATTTGG 57.692 42.857 36.61 0.00 42.66 3.28
1339 5099 4.855388 CACTAAGTTGCAGCTGCTAATTTG 59.145 41.667 33.37 31.52 42.66 2.32
1340 5100 4.616835 GCACTAAGTTGCAGCTGCTAATTT 60.617 41.667 33.37 27.90 42.49 1.82
1341 5101 3.119708 GCACTAAGTTGCAGCTGCTAATT 60.120 43.478 36.61 33.85 42.49 1.40
1342 5102 2.421424 GCACTAAGTTGCAGCTGCTAAT 59.579 45.455 36.61 27.34 42.49 1.73
1343 5103 1.806542 GCACTAAGTTGCAGCTGCTAA 59.193 47.619 36.61 25.66 42.49 3.09
1344 5104 1.002430 AGCACTAAGTTGCAGCTGCTA 59.998 47.619 36.61 28.48 45.62 3.49
1345 5105 0.250640 AGCACTAAGTTGCAGCTGCT 60.251 50.000 36.61 20.81 45.62 4.24
1346 5106 1.396301 CTAGCACTAAGTTGCAGCTGC 59.604 52.381 31.89 31.89 45.62 5.25
1347 5107 1.396301 GCTAGCACTAAGTTGCAGCTG 59.604 52.381 10.11 10.11 45.62 4.24
1348 5108 1.277557 AGCTAGCACTAAGTTGCAGCT 59.722 47.619 18.83 13.00 44.76 4.24
1349 5109 1.731720 AGCTAGCACTAAGTTGCAGC 58.268 50.000 18.83 9.90 45.62 5.25
1350 5110 3.452474 CCTAGCTAGCACTAAGTTGCAG 58.548 50.000 18.83 0.00 45.62 4.41
1351 5111 2.418746 GCCTAGCTAGCACTAAGTTGCA 60.419 50.000 18.83 0.00 45.62 4.08
1352 5112 2.205911 GCCTAGCTAGCACTAAGTTGC 58.794 52.381 18.83 6.19 43.34 4.17
1353 5113 2.159226 ACGCCTAGCTAGCACTAAGTTG 60.159 50.000 18.83 5.72 0.00 3.16
1406 5213 6.962686 AGTACCAACTTTTTAAATCGTGGTC 58.037 36.000 13.56 8.32 29.00 4.02
1415 5222 5.627135 AGCCAGCTAGTACCAACTTTTTAA 58.373 37.500 0.00 0.00 37.15 1.52
1422 5229 1.407025 GGGAAGCCAGCTAGTACCAAC 60.407 57.143 0.00 0.00 0.00 3.77
1536 9541 7.038048 TCAATGCATATTCCTCATCGAGATAC 58.962 38.462 0.00 0.00 0.00 2.24
1596 17868 1.123928 AAGGCCGGGTTCAGAGATAG 58.876 55.000 2.18 0.00 0.00 2.08
1602 17874 1.524008 GACCAAAAGGCCGGGTTCAG 61.524 60.000 2.18 0.30 34.39 3.02
1622 17894 6.564686 CGCTCTTGTATGTTGTAATGCCATAG 60.565 42.308 0.00 0.00 0.00 2.23
1678 17975 1.209383 CATGTGTGCTGCAGACTGC 59.791 57.895 27.00 20.86 45.29 4.40
1719 18016 4.156008 GGGAATTTACCATGTGTGTCACTC 59.844 45.833 4.27 0.91 35.11 3.51
1842 18163 5.668471 CTCTCATCAGAAAACCAGCAGATA 58.332 41.667 0.00 0.00 0.00 1.98
1849 18170 5.129320 TGCTATAGCTCTCATCAGAAAACCA 59.871 40.000 24.61 0.00 42.66 3.67
1861 18182 3.320541 TCTTGGCTCTTGCTATAGCTCTC 59.679 47.826 24.61 9.70 42.66 3.20
1872 18195 1.268899 CTTGTTGGCTCTTGGCTCTTG 59.731 52.381 0.00 0.00 41.46 3.02
1902 18226 8.027189 CCCTAGGAAATTTAGAAAGAAAAACGG 58.973 37.037 11.48 0.00 0.00 4.44
1918 18242 2.025037 TGCTTGCATGACCCTAGGAAAT 60.025 45.455 11.48 0.00 0.00 2.17
1942 18266 9.196552 GATTCCTCTTGTTGAAAAACCAATTAG 57.803 33.333 0.00 0.00 0.00 1.73
1943 18267 8.147704 GGATTCCTCTTGTTGAAAAACCAATTA 58.852 33.333 0.00 0.00 0.00 1.40
1950 18274 4.343814 GTGGGGATTCCTCTTGTTGAAAAA 59.656 41.667 3.76 0.00 36.20 1.94
2011 18336 7.208064 ACTGCTATTAATTGAGAGGGGTTAA 57.792 36.000 0.77 0.00 0.00 2.01
2023 18348 9.686683 AAGAAACTCATGGTACTGCTATTAATT 57.313 29.630 0.00 0.00 0.00 1.40
2099 18463 3.807538 CATGTGTGCGCCTCAGGC 61.808 66.667 5.22 5.22 46.75 4.85
2102 18466 1.746239 CATCCATGTGTGCGCCTCA 60.746 57.895 4.18 3.87 0.00 3.86
2104 18468 1.746615 GTCATCCATGTGTGCGCCT 60.747 57.895 4.18 0.00 0.00 5.52
2105 18469 1.709147 GAGTCATCCATGTGTGCGCC 61.709 60.000 4.18 0.00 0.00 6.53
2106 18470 1.709147 GGAGTCATCCATGTGTGCGC 61.709 60.000 0.00 0.00 45.87 6.09
2107 18471 2.387309 GGAGTCATCCATGTGTGCG 58.613 57.895 0.00 0.00 45.87 5.34
2117 18481 0.312416 CGTCGGATGGAGGAGTCATC 59.688 60.000 0.00 0.00 40.02 2.92
2118 18482 0.395862 ACGTCGGATGGAGGAGTCAT 60.396 55.000 1.77 0.00 34.64 3.06
2121 18485 0.611062 TCAACGTCGGATGGAGGAGT 60.611 55.000 1.77 0.00 34.64 3.85
2124 18488 0.736325 GTGTCAACGTCGGATGGAGG 60.736 60.000 1.77 0.00 36.61 4.30
2144 18508 4.389576 CAAGGCCGTGTGCGCTTC 62.390 66.667 10.93 2.14 42.61 3.86
2149 18513 3.357079 CCAGACAAGGCCGTGTGC 61.357 66.667 29.65 18.94 40.16 4.57
2155 18519 1.012486 CGTTACGACCAGACAAGGCC 61.012 60.000 0.00 0.00 0.00 5.19
2244 18703 1.961277 CGGAGCAAAACAGACGGCT 60.961 57.895 0.00 0.00 39.75 5.52
2248 18729 2.626780 GGGCCGGAGCAAAACAGAC 61.627 63.158 5.05 0.00 42.56 3.51
2265 18746 0.883833 ACGCGGTTATATACGGGAGG 59.116 55.000 12.47 0.00 44.45 4.30
2270 18751 3.477122 GAGTGAGACGCGGTTATATACG 58.523 50.000 12.47 0.00 0.00 3.06
2282 18763 3.516615 GAAGAAGATTGGGAGTGAGACG 58.483 50.000 0.00 0.00 0.00 4.18
2286 18767 2.631384 TGGGAAGAAGATTGGGAGTGA 58.369 47.619 0.00 0.00 0.00 3.41
2295 18776 5.598005 TGTTTTGTGTTGATGGGAAGAAGAT 59.402 36.000 0.00 0.00 0.00 2.40
2314 18795 6.183360 TGTCTCACTGAATTGATGCTTGTTTT 60.183 34.615 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.